TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 131537.2.78
         (943 letters)

Database: MedicagoSativa_nucl_with_EST.fasta 
           7669 sequences; 3,745,706 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CO512850.1|CO512850  s13dSG20E0100003_121626 Glandular tr...   153   3e-038
gb|AF191305.1|AF191305  Medicago sativa glycine-rich RNA bin...   147   2e-036
gb|CO514732.1|CO514732  s13dSG55E0300023_328124 Glandular tr...    96   3e-021

>gb|CO512850.1|CO512850 s13dSG20E0100003_121626 Glandular trichomes Medicago sativa cDNA,
           mRNA sequence
          Length = 398

 Score =  153 bits (329), Expect = 3e-038
 Identities = 61/83 (73%), Positives = 74/83 (89%)
 Frame = -2 / +2

                                                                       
Query: 831 SDVEYRCFVGGLAWATDDHSLHNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMR 652
           +DVEYRCFVGGLAWATD+ +L  AFS YGE+++SKII DRET RSRGFGFVTF+ E++M 
Sbjct: 83  ADVEYRCFVGGLAWATDNDALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMN 262

                                  
Query: 651 NAIEGMNGKELDGRNITVNEAQS 583
           +AIE MNG++LDGRNITVN+AQS
Sbjct: 263 DAIEAMNGQDLDGRNITVNQAQS 331



>gb|AF191305.1|AF191305 Medicago sativa glycine-rich RNA binding protein (GRP1) mRNA,
           partial cds
          Length = 318

 Score =  147 bits (315), Expect = 2e-036
 Identities = 59/83 (71%), Positives = 72/83 (86%)
 Frame = -2 / +1

                                                                       
Query: 831 SDVEYRCFVGGLAWATDDHSLHNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMR 652
           +DVE RCFVGGLAWATD+ +L  AFS YGE+++SKII DRET RSRGFGFVTF+ E++M 
Sbjct: 7   ADVEDRCFVGGLAWATDNDALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMN 186

                                  
Query: 651 NAIEGMNGKELDGRNITVNEAQS 583
           + IE MNG++LDGRNITVN+AQS
Sbjct: 187 DVIEAMNGQDLDGRNITVNQAQS 255



>gb|CO514732.1|CO514732 s13dSG55E0300023_328124 Glandular trichomes Medicago sativa cDNA,
           mRNA sequence
          Length = 468

 Score = 95.9 bits (203), Expect(2) = 3e-021
 Identities = 37/76 (48%), Positives = 57/76 (75%)
 Frame = -2 / +2

                                                                       
Query: 816 RCFVGGLAWATDDHSLHNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRNAIEG 637
           + FVGGL+W+ D+ SL +AFS++G+V E +I+ D+++ R+RGFGFV FS E+A ++A + 
Sbjct: 143 KLFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRARGFGFVIFSNEDAAKSAKDA 322

                           
Query: 636 MNGKELDGRNITVNEA 589
           M GK L GR + +N A
Sbjct: 323 MGGKALLGRPLRINFA 370




 Score = 22.1 bits (42), Expect(2) = 3e-021
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = -3 / +1

                   
Query: 287 VCCCPSVF 264
           +CCC S+F
Sbjct: 391 ICCCSSIF 414



  Database: MedicagoSativa_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:23 PM
  Number of letters in database: 3,745,706
  Number of sequences in database:  7669
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 5,140,722
Number of Sequences: 7669
Number of extensions: 61326
Number of successful extensions: 779
Number of sequences better than 1.0e-020: 4
length of database: 1,248,568
effective HSP length: 43
effective length of database: 918,801
effective search space used: 248076270
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)