TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 131537.2.623
         (863 letters)

Database: MedicagoSativa_nucl_with_EST.fasta 
           7669 sequences; 3,745,706 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CO512850.1|CO512850  s13dSG20E0100003_121626 Glandular tr...   152   7e-038
gb|AF191305.1|AF191305  Medicago sativa glycine-rich RNA bin...   145   6e-036
gb|CO514732.1|CO514732  s13dSG55E0300023_328124 Glandular tr...   100   5e-022

>gb|CO512850.1|CO512850 s13dSG20E0100003_121626 Glandular trichomes Medicago sativa cDNA,
           mRNA sequence
          Length = 398

 Score =  152 bits (326), Expect = 7e-038
 Identities = 61/83 (73%), Positives = 72/83 (86%)
 Frame = +1 / +2

                                                                       
Query: 160 SDVEYRCFVGGLAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEDAMR 339
           +DVEYRCFVGGLAWATD+ +L  AFS YGE+++SKII DRET RSRGFGFVTF+ E +M 
Sbjct: 83  ADVEYRCFVGGLAWATDNDALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMN 262

                                  
Query: 340 SAIEGMNGKELDGRNITVNEAQS 408
            AIE MNG++LDGRNITVN+AQS
Sbjct: 263 DAIEAMNGQDLDGRNITVNQAQS 331



>gb|AF191305.1|AF191305 Medicago sativa glycine-rich RNA binding protein (GRP1) mRNA,
           partial cds
          Length = 318

 Score =  145 bits (312), Expect = 6e-036
 Identities = 59/83 (71%), Positives = 70/83 (84%)
 Frame = +1 / +1

                                                                       
Query: 160 SDVEYRCFVGGLAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEDAMR 339
           +DVE RCFVGGLAWATD+ +L  AFS YGE+++SKII DRET RSRGFGFVTF+ E +M 
Sbjct: 7   ADVEDRCFVGGLAWATDNDALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMN 186

                                  
Query: 340 SAIEGMNGKELDGRNITVNEAQS 408
             IE MNG++LDGRNITVN+AQS
Sbjct: 187 DVIEAMNGQDLDGRNITVNQAQS 255



>gb|CO514732.1|CO514732 s13dSG55E0300023_328124 Glandular trichomes Medicago sativa cDNA,
           mRNA sequence
          Length = 468

 Score = 99.6 bits (211), Expect = 5e-022
 Identities = 39/76 (51%), Positives = 57/76 (75%)
 Frame = +1 / +2

                                                                       
Query: 175 RCFVGGLAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEDAMRSAIEG 354
           + FVGGL+W+ D+ SL +AFS++G+V E +I+ D+++ R+RGFGFV FS EDA +SA + 
Sbjct: 143 KLFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRARGFGFVIFSNEDAAKSAKDA 322

                           
Query: 355 MNGKELDGRNITVNEA 402
           M GK L GR + +N A
Sbjct: 323 MGGKALLGRPLRINFA 370



  Database: MedicagoSativa_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:23 PM
  Number of letters in database: 3,745,706
  Number of sequences in database:  7669
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 4,034,119
Number of Sequences: 7669
Number of extensions: 37267
Number of successful extensions: 478
Number of sequences better than 1.0e-020: 4
length of database: 1,248,568
effective HSP length: 42
effective length of database: 926,470
effective search space used: 226985150
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)