TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.444
(1020 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AF028841.1|AF028841 Medicago sativa proline-rich cell wa... 84 3e-025
>gb|AF028841.1|AF028841 Medicago sativa proline-rich cell wall protein gene, complete cds
Length = 3617
Score = 83.5 bits (176), Expect(2) = 3e-025
Identities = 29/58 (50%), Positives = 43/58 (74%)
Frame = +3 / +2
Query: 489 GDANVKCCPLVKGIAGLSAAACLCTAIKAKVLDISVYVPIALEVLVNCGCEVPPGYKC 662
G A CCPL++G+ L AA CLCT I+ K+L+I++ +P+AL+VL++CG P G+KC
Sbjct: 2513 GSAKQTCCPLLQGLVDLDAAICLCTTIRLKLLNINLVIPLALQVLIDCGKTPPEGFKC 2686
Score = 46.4 bits (95), Expect(2) = 3e-025
Identities = 17/22 (77%), Positives = 19/22 (86%)
Frame = +3 / +2
Query: 426 CPIDALKLGACVDILGNEVHIG 491
C IDALKLGACVD+LG +HIG
Sbjct: 2441 CSIDALKLGACVDVLGGLIHIG 2506
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 6,375,929
Number of Sequences: 7669
Number of extensions: 75637
Number of successful extensions: 925
Number of sequences better than 1.0e-020: 1
length of database: 1,248,568
effective HSP length: 43
effective length of database: 918,801
effective search space used: 271965096
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)