TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.405
(1589 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO514896.1|CO514896 s13dSG56F1000091_328452 Glandular tr... 139 1e-035
>gb|CO514896.1|CO514896 s13dSG56F1000091_328452 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 534
Score = 139 bits (299), Expect(2) = 1e-035
Identities = 63/78 (80%), Positives = 66/78 (84%)
Frame = -3 / +3
Query: 654 GITIGAGLASYPIDTVRRRMMMTSGEAVKYNSSLDAFKQIVAKEGTKSLFKGAGANILRX 475
GITIGAGLASYPI TVRRRMMMTSGEAVKYNSSL AF+ IVAKEGTKSLFKGAGANILR
Sbjct: 3 GITIGAGLASYPIGTVRRRMMMTSGEAVKYNSSLHAFQTIVAKEGTKSLFKGAGANILRA 182
Query: 474 XXXXXXXXGYDKLQVVVF 421
GYDKLQ+V+F
Sbjct: 183 VAGAGVLAGYDKLQLVLF 236
Score = 25.4 bits (49), Expect(2) = 1e-035
Identities = 6/19 (31%), Positives = 14/19 (73%)
Frame = -2 / +2
Query: 406 VWWWLRMYNDDDDEQQT*C 350
+W+W R+ +DD++ ++ C
Sbjct: 245 IWFWRRLNDDDNNYPESFC 301
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 12,809,856
Number of Sequences: 7669
Number of extensions: 189473
Number of successful extensions: 1310
Number of sequences better than 1.0e-020: 1
length of database: 1,248,568
effective HSP length: 44
effective length of database: 911,132
effective search space used: 441899020
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)