TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.211
(777 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO514287.1|CO514287 s13dSG76F1000079_157236 Glandular tr... 178 8e-046
gb|CO513351.1|CO513351 s13dSG38A0300017_129866 Glandular tr... 175 5e-045
gb|CO516018.1|CO516018 s13dSG64A0200005_445364 Glandular tr... 140 2e-034
gb|CO516125.1|CO516125 s13dSG65F0900079_445578 Glandular tr... 118 7e-028
gb|CO516115.1|CO516115 s13dSG65E0500039_445558 Glandular tr... 103 3e-023
>gb|CO514287.1|CO514287 s13dSG76F1000079_157236 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 521
Score = 178 bits (383), Expect = 8e-046
Identities = 79/92 (85%), Positives = 81/92 (88%)
Frame = -2 / +2
Query: 512 VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFXXXXXXXXXXARYNKKPTITSRE 333
VETYKIYIFKVLKQVHPDIG+SSKAM IMNSFINDIF ARYNKKPTITSRE
Sbjct: 209 VETYKIYIFKVLKQVHPDIGVSSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSRE 388
Query: 332 IQTSVRLVLPGELAKHAVSEGTKAVTKFTSS* 237
IQT+VRLVLPGELAKHAVSEGTKAVTKFTSS*
Sbjct: 389 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS* 484
Score = 76.2 bits (160), Expect(2) = 8e-023
Identities = 34/42 (80%), Positives = 37/42 (88%)
Frame = +1 / -3
Query: 241 ELVNLVTALVPSETACLASSPGRTRRTEVWISRDVMVGFLLY 366
ELVNLVTALVPSETACLA+SPGRT T V IS +V+VGFLLY
Sbjct: 480 ELVNLVTALVPSETACLANSPGRTNLTAV*ISLEVIVGFLLY 355
Score = 45.1 bits (92), Expect(2) = 8e-023
Identities = 20/30 (66%), Positives = 24/30 (80%)
Frame = +1 / -3
Query: 424 FMMDMALDEMPMSGCTCFSTLKM*ILYVST 513
F++ +AL E P+SG TCF TLKM ILYVST
Sbjct: 297 FIIPIALLETPISG*TCFRTLKMYILYVST 208
>gb|CO513351.1|CO513351 s13dSG38A0300017_129866 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 566
Score = 175 bits (377), Expect = 5e-045
Identities = 79/92 (85%), Positives = 80/92 (86%)
Frame = -2 / +1
Query: 512 VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFXXXXXXXXXXARYNKKPTITSRE 333
VETYKIYIFK LKQVHPDIGISSKAM IMNSFINDIF ARYNKKPTITSRE
Sbjct: 247 VETYKIYIFKGLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSRE 426
Query: 332 IQTSVRLVLPGELAKHAVSEGTKAVTKFTSS* 237
IQT+VRLVLPGELAKHAVSEGTKAVTKFTSS*
Sbjct: 427 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS* 522
Score = 88.1 bits (186), Expect(2) = 3e-025
Identities = 39/42 (92%), Positives = 40/42 (95%)
Frame = +1 / -1
Query: 241 ELVNLVTALVPSETACLASSPGRTRRTEVWISRDVMVGFLLY 366
ELVNLVTALVPSETACLASSPGRTRRT V ISR+VMVGFLLY
Sbjct: 518 ELVNLVTALVPSETACLASSPGRTRRTAV*ISREVMVGFLLY 393
Score = 41.4 bits (84), Expect(2) = 3e-025
Identities = 20/30 (66%), Positives = 23/30 (76%)
Frame = +1 / -1
Query: 424 FMMDMALDEMPMSGCTCFSTLKM*ILYVST 513
FM+ +AL E+PMSG TC LKM*IL VST
Sbjct: 335 FMIPIALLEIPMSG*TCLRPLKM*IL*VST 246
>gb|CO516018.1|CO516018 s13dSG64A0200005_445364 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 500
Score = 140 bits (300), Expect = 2e-034
Identities = 62/74 (83%), Positives = 63/74 (85%)
Frame = -2 / +2
Query: 512 VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFXXXXXXXXXXARYNKKPTITSRE 333
VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIF ARYNKKPTITSRE
Sbjct: 263 VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSRE 442
Query: 332 IQTSVRLVLPGELA 291
IQT+VRLVLPGELA
Sbjct: 443 IQTAVRLVLPGELA 484
>gb|CO516125.1|CO516125 s13dSG65F0900079_445578 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 363
Score = 118 bits (253), Expect = 7e-028
Identities = 54/65 (83%), Positives = 55/65 (84%)
Frame = -2 / +2
Query: 431 IMNSFINDIFXXXXXXXXXXARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTK 252
IMNSFINDIF ARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTK
Sbjct: 8 IMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 187
Query: 251 FTSS* 237
FTSS*
Sbjct: 188 FTSS* 202
>gb|CO516115.1|CO516115 s13dSG65E0500039_445558 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 403
Score = 103 bits (219), Expect = 3e-023
Identities = 45/56 (80%), Positives = 45/56 (80%)
Frame = -2 / +2
Query: 512 VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFXXXXXXXXXXARYNKKPTI 345
VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIF ARYNKKPTI
Sbjct: 236 VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTI 403
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 3,833,781
Number of Sequences: 7669
Number of extensions: 31750
Number of successful extensions: 513
Number of sequences better than 1.0e-020: 5
length of database: 1,248,568
effective HSP length: 42
effective length of database: 926,470
effective search space used: 200117520
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)