TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.12
(694 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO514287.1|CO514287 s13dSG76F1000079_157236 Glandular tr... 196 2e-051
gb|CO513351.1|CO513351 s13dSG38A0300017_129866 Glandular tr... 194 1e-050
gb|CO516018.1|CO516018 s13dSG64A0200005_445364 Glandular tr... 158 6e-040
gb|CO516125.1|CO516125 s13dSG65F0900079_445578 Glandular tr... 138 5e-034
gb|CO516115.1|CO516115 s13dSG65E0500039_445558 Glandular tr... 121 9e-029
>gb|CO514287.1|CO514287 s13dSG76F1000079_157236 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 521
Score = 196 bits (423), Expect = 2e-051
Identities = 85/92 (92%), Positives = 90/92 (97%)
Frame = -3 / +2
Query: 458 VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGEAAKLARYNKKPTITSRE 279
VETYKIYIFKVLKQVHPDIG+SSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSRE
Sbjct: 209 VETYKIYIFKVLKQVHPDIGVSSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSRE 388
Query: 278 IQTSVRLVLPGELAKHAVSEGTKAVTKFTSS* 183
IQT+VRLVLPGELAKHAVSEGTKAVTKFTSS*
Sbjct: 389 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS* 484
Score = 110 bits (234), Expect = 2e-025
Identities = 55/89 (61%), Positives = 62/89 (69%)
Frame = +1 / -3
Query: 193 VNLVTALVPSETACLASSPGRTRRTEV*ISREVMVGFXXXXXXXXXXXXXXXKMSLMKEF 372
VNLVTALVPSETACLA+SPGRT T V*IS EV+VGF K+SLMK F
Sbjct: 474 VNLVTALVPSETACLANSPGRTNLTAV*ISLEVIVGFLLYLAKRDDS*ASFSKISLMKLF 295
Query: 373 MMDMALEEMPMSGWTCFSTLKM*IL*VST 459
++ +AL E P+SG TCF TLKM IL VST
Sbjct: 294 IIPIALLETPISG*TCFRTLKMYILYVST 208
>gb|CO513351.1|CO513351 s13dSG38A0300017_129866 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 566
Score = 194 bits (418), Expect = 1e-050
Identities = 85/93 (91%), Positives = 90/93 (96%)
Frame = -3 / +1
Query: 458 VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGEAAKLARYNKKPTITSRE 279
VETYKIYIFK LKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSRE
Sbjct: 247 VETYKIYIFKGLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSRE 426
Query: 278 IQTSVRLVLPGELAKHAVSEGTKAVTKFTSS*I 180
IQT+VRLVLPGELAKHAVSEGTKAVTKFTSS*+
Sbjct: 427 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS*M 525
Score = 126 bits (269), Expect = 4e-030
Identities = 62/89 (69%), Positives = 66/89 (74%)
Frame = +1 / -1
Query: 193 VNLVTALVPSETACLASSPGRTRRTEV*ISREVMVGFXXXXXXXXXXXXXXXKMSLMKEF 372
VNLVTALVPSETACLASSPGRTRRT V*ISREVMVGF K+SLMK F
Sbjct: 512 VNLVTALVPSETACLASSPGRTRRTAV*ISREVMVGFLLYLASLEDS*ASFSKISLMKLF 333
Query: 373 MMDMALEEMPMSGWTCFSTLKM*IL*VST 459
M+ +AL E+PMSG TC LKM*IL*VST
Sbjct: 332 MIPIALLEIPMSG*TCLRPLKM*IL*VST 246
Score = 113 bits (241), Expect = 3e-026
Identities = 49/89 (55%), Positives = 61/89 (68%)
Frame = +3 / -3
Query: 177 SNLR*CELSDGLGALRDSVLGELAGKDKANRGLNLPRGDGGLLVVARKLGSLAGELLEDV 356
S+ R E + LG+LRDS+LGE K+K N LNLPRGDG LVV RK G +LL+D+
Sbjct: 528 SHSRASEFGNSLGSLRDSMLGEFTRKNKTNSSLNLPRGDGRFLVVPRKSGGFLSKLLKDI 349
Query: 357 VDEGVHDGHGLGRDADVGVDLLQHLEDVD 443
+DE VHD H L D DV ++LL+ LEDVD
Sbjct: 348 IDEAVHDPHSLA*DTDVRMNLLETLEDVD 262
>gb|CO516018.1|CO516018 s13dSG64A0200005_445364 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 500
Score = 158 bits (340), Expect = 6e-040
Identities = 68/74 (91%), Positives = 72/74 (97%)
Frame = -3 / +2
Query: 458 VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGEAAKLARYNKKPTITSRE 279
VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSRE
Sbjct: 263 VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSRE 442
Query: 278 IQTSVRLVLPGELA 237
IQT+VRLVLPGELA
Sbjct: 443 IQTAVRLVLPGELA 484
>gb|CO516125.1|CO516125 s13dSG65F0900079_445578 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 363
Score = 138 bits (297), Expect = 5e-034
Identities = 61/66 (92%), Positives = 65/66 (98%)
Frame = -3 / +2
Query: 377 IMNSFINDIFEKLAGEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTK 198
IMNSFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTK
Sbjct: 8 IMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 187
Query: 197 FTSS*I 180
FTSS*I
Sbjct: 188 FTSS*I 205
>gb|CO516115.1|CO516115 s13dSG65E0500039_445558 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 403
Score = 121 bits (259), Expect = 9e-029
Identities = 51/56 (91%), Positives = 54/56 (96%)
Frame = -3 / +2
Query: 458 VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGEAAKLARYNKKPTI 291
VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTI
Sbjct: 236 VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTI 403
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 4,516,066
Number of Sequences: 7669
Number of extensions: 49320
Number of successful extensions: 778
Number of sequences better than 1.0e-020: 5
length of database: 1,248,568
effective HSP length: 42
effective length of database: 926,470
effective search space used: 174176360
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)