TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QCN1e04.yg.2.1
         (361 letters)

Database: Hordeum_nucl_with_EST.fasta 
           312,970 sequences; 175,134,539 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BM443840.2|BM443840  EBem09_SQ001_L03_R embryo, 1 Day ger...   109   6e-024
gb|BQ756733.1|BQ756733  EBem09_SQ003_J15_R embryo, 1 Day ger...   109   6e-024

>gb|BM443840.2|BM443840 EBem09_SQ001_L03_R embryo, 1 Day germination, no treatment, cv
           Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
           EBem09_SQ001_L03 5', mRNA sequence
          Length = 541

 Score =  109 bits (233), Expect = 6e-024
 Identities = 41/79 (51%), Positives = 56/79 (70%)
 Frame = +1 / +3

                                                                       
Query: 73  MISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQILS 252
           MI+    YHV+   VPLYVAM++AY S++WW++FTP+QCSGIN+FVA F++PLLSF  +S
Sbjct: 177 MITGTDFYHVMTAMVPLYVAMMLAYGSVKWWRIFTPDQCSGINRFVALFAVPLLSFHFIS 356

                              
Query: 253 TNXXXXXNLKXXXXXXXQK 309
           +N     NL+       QK
Sbjct: 357 SNNPYTMNLRFIAADTLQK 413



>gb|BQ756733.1|BQ756733 EBem09_SQ003_J15_R embryo, 1 Day germination, no treatment, cv
           Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
           EBem09_SQ003_J15 5', mRNA sequence
          Length = 454

 Score =  109 bits (233), Expect = 6e-024
 Identities = 42/79 (53%), Positives = 57/79 (72%)
 Frame = +1 / +3

                                                                       
Query: 73  MISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQILS 252
           MI+    YHV+   VPLYVAM++AY S++WW++FTP+QCSGIN+FVA F++PLLSF  +S
Sbjct: 177 MITGTDFYHVMTAMVPLYVAMMLAYGSVKWWRIFTPDQCSGINRFVALFAVPLLSFHFIS 356

                              
Query: 253 TNXXXXXNLKXXXXXXXQK 309
           +N     NL+       QK
Sbjct: 357 SNNPYTMNLRXIAADTLQK 413



  Database: Hordeum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:16 PM
  Number of letters in database: 175,134,539
  Number of sequences in database:  312,970
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 142,163,160
Number of Sequences: 312970
Number of extensions: 1611742
Number of successful extensions: 89931
Number of sequences better than 1.0e-020: 3
length of database: 58,378,179
effective HSP length: 49
effective length of database: 43,042,649
effective search space used: 3012985430
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)