TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCM12g02.yg.2.1
(480 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE215834.2|BE215834 HV_CEb0008J21f Hordeum vulgare seedl... 232 1e-060
gb|AY177665.1| Hordeum vulgare subsp. vulgare putative call... 229 9e-060
gb|BJ469639.1|BJ469639 BJ469639 K. Sato unpublished cDNA li... 224 2e-058
gb|BJ473076.1|BJ473076 BJ473076 K. Sato unpublished cDNA li... 224 2e-058
gb|BU971000.1|BU971000 HB16F02r BC Hordeum vulgare subsp. v... 221 3e-057
gb|BM374437.2|BM374437 EBpi03_SQ003_J24_R pistil, 4 DPA, no... 210 4e-054
gb|CA031522.1|CA031522 HX10D22r HX Hordeum vulgare subsp. v... 184 3e-046
gb|BF616755.1|BF616755 HVSMEc0012I18f Hordeum vulgare seedl... 182 1e-045
gb|BE559011.2|BE559011 HV_CEb0022E12f Hordeum vulgare seedl... 156 1e-039
gb|AV836635.1|AV836635 AV836635 K. Sato unpublished cDNA li... 161 2e-039
gb|BU982241.1|BU982241 HA25P01r HA Hordeum vulgare subsp. v... 140 4e-033
gb|BG369637.1|BG369637 HVSMEi0025E14f Hordeum vulgare 20 DA... 133 8e-031
gb|AV932586.1|AV932586 AV932586 K. Sato unpublished cDNA li... 112 1e-024
gb|AV934137.1|AV934137 AV934137 K. Sato unpublished cDNA li... 107 4e-023
>gb|BE215834.2|BE215834 HV_CEb0008J21f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0008J21f, mRNA sequence
Length = 504
Score = 232 bits (500), Expect = 1e-060
Identities = 88/158 (55%), Positives = 114/158 (72%)
Frame = -3 / +1
Query: 475 ARXGTVXNQQFIIQLGFFTALPMIIENSLEQGFLPAIWDFFTMQMNFSSVFYTFSMGTKS 296
AR N QF+ Q+G FTA+PMI+ LE+G L A F TMQ SVF+TFS+GT++
Sbjct: 16 ARVSIALNTQFLFQIGVFTAIPMILGFILEEGVLTAFVSFITMQFQLCSVFFTFSLGTRT 195
Query: 295 HYYGRTILHGGAKYRATGRGFVVQHKSFAENYRLYARGHFIKAIELGIILTVYAAHSVIA 116
HY+GRTILHGGAKYRATGRGFVV+H FAENYRLY+R HF+K +E+ ++L ++ A+
Sbjct: 196 HYFGRTILHGGAKYRATGRGFVVRHIKFAENYRLYSRSHFVKGLEVALLLVIFLAYGFNN 375
Query: 115 KNTLVYIXXXISSWFLVVSWIMAPFAFNPSGFDWLKTV 2
+ YI ISSWF+ +SW+ AP+ FNPSGF+W K V
Sbjct: 376 SGAIGYILLSISSWFMALSWLFAPYVFNPSGFEWQKVV 489
Score = 109 bits (232), Expect = 1e-023
Identities = 65/143 (45%), Positives = 75/143 (52%)
Frame = +3 / -2
Query: 3 TVFNQSKPDGLKANGAIIHDTTRNQLDIXXXM*TSVFLAITLCAAYTVNIIPSSIAFMKW 182
T F S PDGL GA + NQL + +* L + A N +S F KW
Sbjct: 488 TTFCHSNPDGLNTYGAKSQERAINQLLMESKI*PIAPLLLKP*ARKITNRSATSSPFTKW 309
Query: 183 PLAYSL*FSAKLLCCTTKPRPVARYFAPP*RIVRP**WLLVPMENV*NTDEKFICIVKKS 362
*FSA L+C TTKP PVA YFAPP IVRP * +LVP ENV NT+ + C+V K
Sbjct: 308 LRE*RR*FSANLICRTTKPLPVALYFAPPCSIVRPK**VLVPRENVKNTEHSWNCMVMKL 129
Query: 363 QIAGRKPCSREFSIIIGNAVKKP 431
A R P SR IIG AV P
Sbjct: 128 TKAVRTPSSRMKPRIIGIAVNTP 60
>gb|AY177665.1| Hordeum vulgare subsp. vulgare putative callose synthase mRNA,
complete cds
Length = 6180
Score = 229 bits (494), Expect = 9e-060
Identities = 86/151 (56%), Positives = 112/151 (74%)
Frame = -3 / +3
Query: 454 NQQFIIQLGFFTALPMIIENSLEQGFLPAIWDFFTMQMNFSSVFYTFSMGTKSHYYGRTI 275
N QF+ Q+G FTA+PMI+ LE+G L A F TMQ SVF+TFS+GT++HY+GRTI
Sbjct: 4701 NTQFLFQIGVFTAIPMILGFILEEGVLTAFVSFITMQFQLCSVFFTFSLGTRTHYFGRTI 4880
Query: 274 LHGGAKYRATGRGFVVQHKSFAENYRLYARGHFIKAIELGIILTVYAAHSVIAKNTLVYI 95
LHGGAKYRATGRGFVV+H FAENYRLY+R HF+K +E+ ++L ++ A+ + YI
Sbjct: 4881 LHGGAKYRATGRGFVVRHIKFAENYRLYSRSHFVKGLEVALLLVIFLAYGFNNSGAIGYI 5060
Query: 94 XXXISSWFLVVSWIMAPFAFNPSGFDWLKTV 2
ISSWF+ +SW+ AP+ FNPSGF+W K V
Sbjct: 5061 LLSISSWFMALSWLFAPYVFNPSGFEWQKVV 5153
Score = 109 bits (232), Expect = 1e-023
Identities = 65/143 (45%), Positives = 75/143 (52%)
Frame = +3 / -3
Query: 3 TVFNQSKPDGLKANGAIIHDTTRNQLDIXXXM*TSVFLAITLCAAYTVNIIPSSIAFMKW 182
T F S PDGL GA + NQL + +* L + A N +S F KW
Sbjct: 5152 TTFCHSNPDGLNTYGAKSQERAINQLLMESKI*PIAPLLLKP*ARKITNRSATSSPFTKW 4973
Query: 183 PLAYSL*FSAKLLCCTTKPRPVARYFAPP*RIVRP**WLLVPMENV*NTDEKFICIVKKS 362
*FSA L+C TTKP PVA YFAPP IVRP * +LVP ENV NT+ + C+V K
Sbjct: 4972 LRE*RR*FSANLICRTTKPLPVALYFAPPCSIVRPK**VLVPRENVKNTEHSWNCMVMKL 4793
Query: 363 QIAGRKPCSREFSIIIGNAVKKP 431
A R P SR IIG AV P
Sbjct: 4792 TKAVRTPSSRMKPRIIGIAVNTP 4724
>gb|BJ469639.1|BJ469639 BJ469639 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal27j14 5', mRNA sequence
Length = 604
Score = 224 bits (484), Expect = 2e-058
Identities = 87/149 (58%), Positives = 110/149 (73%)
Frame = -3 / +1
Query: 448 QFIIQLGFFTALPMIIENSLEQGFLPAIWDFFTMQMNFSSVFYTFSMGTKSHYYGRTILH 269
Q +QLGF ALPM++E LE+GF A+ DF MQ+ +SVF+TFS+GTK+HYYG+T+LH
Sbjct: 13 QSFVQLGFLMALPMMMEIGLERGFRTALSDFVLMQLQLASVFFTFSLGTKTHYYGKTLLH 192
Query: 268 GGAKYRATGRGFVVQHKSFAENYRLYARGHFIKAIELGIILTVYAAHSVIAKNTLVYIXX 89
GGA+YRATGRGFVV H FAENYRLY+R HF+K IEL I+L V+ + + YI
Sbjct: 193 GGAEYRATGRGFVVFHAKFAENYRLYSRSHFVKGIELMILLIVFEIFGQSYRGAIAYIFI 372
Query: 88 XISSWFLVVSWIMAPFAFNPSGFDWLKTV 2
S WF+VV+W+ APF FNPSGF+W K V
Sbjct: 373 TFSMWFMVVTWLFAPFLFNPSGFEWQKIV 459
Score = 105 bits (224), Expect(2) = 8e-026
Identities = 55/103 (53%), Positives = 63/103 (61%)
Frame = +3 / -3
Query: 141 TVNIIPSSIAFMKWPLAYSL*FSAKLLCCTTKPRPVARYFAPP*RIVRP**WLLVPMENV 320
T++ I +S+ KW YS *FSA L TT PRPVA Y APP V P** +LVP ENV
Sbjct: 320 TISKIINSMPLTKWLREYSR*FSANLAWNTTNPRPVALYSAPPCSSVFP***VLVPRENV 141
Query: 321 *NTDEKFICIVKKSQIAGRKPCSREFSIIIGNAVKKPSCMMNC 449
TD CI KS A P SR SIIIG+A+KKPSC +C
Sbjct: 140 KKTDAN*SCISTKSLNAVLNPLSRPISIIIGSAIKKPSCTNDC 12
Score = 30.4 bits (60), Expect(2) = 8e-026
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3 / -3
Query: 3 TVFNQSKPDGLKANGAIIHDTTRNQLD 83
T+F S P+GL NGA TT N ++
Sbjct: 458 TIFCHSNPEGLNRNGAKSQVTTMNHME 378
>gb|BJ473076.1|BJ473076 BJ473076 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal40n15 5', mRNA sequence
Length = 614
Score = 224 bits (484), Expect = 2e-058
Identities = 87/149 (58%), Positives = 110/149 (73%)
Frame = -3 / +3
Query: 448 QFIIQLGFFTALPMIIENSLEQGFLPAIWDFFTMQMNFSSVFYTFSMGTKSHYYGRTILH 269
Q +QLGF ALPM++E LE+GF A+ DF MQ+ +SVF+TFS+GTK+HYYG+T+LH
Sbjct: 24 QSFVQLGFLMALPMMMEIGLERGFRTALSDFVLMQLQLASVFFTFSLGTKTHYYGKTLLH 203
Query: 268 GGAKYRATGRGFVVQHKSFAENYRLYARGHFIKAIELGIILTVYAAHSVIAKNTLVYIXX 89
GGA+YRATGRGFVV H FAENYRLY+R HF+K IEL I+L V+ + + YI
Sbjct: 204 GGAEYRATGRGFVVFHAKFAENYRLYSRSHFVKGIELMILLIVFEIFGQSYRGAIAYIFI 383
Query: 88 XISSWFLVVSWIMAPFAFNPSGFDWLKTV 2
S WF+VV+W+ APF FNPSGF+W K V
Sbjct: 384 TFSMWFMVVTWLFAPFLFNPSGFEWQKIV 470
Score = 105 bits (224), Expect(2) = 8e-026
Identities = 55/103 (53%), Positives = 63/103 (61%)
Frame = +3 / -2
Query: 141 TVNIIPSSIAFMKWPLAYSL*FSAKLLCCTTKPRPVARYFAPP*RIVRP**WLLVPMENV 320
T++ I +S+ KW YS *FSA L TT PRPVA Y APP V P** +LVP ENV
Sbjct: 331 TISKIINSMPLTKWLREYSR*FSANLAWNTTNPRPVALYSAPPCSSVFP***VLVPRENV 152
Query: 321 *NTDEKFICIVKKSQIAGRKPCSREFSIIIGNAVKKPSCMMNC 449
TD CI KS A P SR SIIIG+A+KKPSC +C
Sbjct: 151 KKTDAN*SCISTKSLNAVLNPLSRPISIIIGSAIKKPSCTNDC 23
Score = 30.4 bits (60), Expect(2) = 8e-026
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3 / -2
Query: 3 TVFNQSKPDGLKANGAIIHDTTRNQLD 83
T+F S P+GL NGA TT N ++
Sbjct: 469 TIFCHSNPEGLNRNGAKSQVTTMNHME 389
>gb|BU971000.1|BU971000 HB16F02r BC Hordeum vulgare subsp. vulgare cDNA clone HB16F02
5-PRIME, mRNA sequence
Length = 380
Score = 221 bits (476), Expect = 3e-057
Identities = 88/94 (93%), Positives = 91/94 (96%)
Frame = -3 / +3
Query: 466 GTVXNQQFIIQLGFFTALPMIIENSLEQGFLPAIWDFFTMQMNFSSVFYTFSMGTKSHYY 287
G V NQQF+IQLGFFTALPMI+ENSLE GFLPA+WDFFTMQMNFSSVFYTFSMGTKSHYY
Sbjct: 99 GAVLNQQFVIQLGFFTALPMILENSLELGFLPAVWDFFTMQMNFSSVFYTFSMGTKSHYY 278
Query: 286 GRTILHGGAKYRATGRGFVVQHKSFAENYRLYAR 185
GRTILHGGAKYRATGRGFVVQHKSFAENYRLYAR
Sbjct: 279 GRTILHGGAKYRATGRGFVVQHKSFAENYRLYAR 380
Score = 191 bits (412), Expect = 2e-048
Identities = 82/94 (87%), Positives = 84/94 (89%)
Frame = +3 / -2
Query: 186 LAYSL*FSAKLLCCTTKPRPVARYFAPP*RIVRP**WLLVPMENV*NTDEKFICIVKKSQ 365
LAYSL*FSAKLLCCTTKPRPVARYFAPP*RIVRP**WL VP+ENV* TDEKFICIVKKSQ
Sbjct: 379 LAYSL*FSAKLLCCTTKPRPVARYFAPP*RIVRP**WLFVPIENV*KTDEKFICIVKKSQ 200
Query: 366 IAGRKPCSREFSIIIGNAVKKPSCMMNC*LXTVP 467
AG+KP SREFS IIG AVKKPSCM NC* T P
Sbjct: 199 TAGKKPSSREFSKIIGRAVKKPSCMTNC*FSTAP 98
Score = 172 bits (370), Expect = 1e-042
Identities = 66/92 (71%), Positives = 75/92 (81%)
Frame = -2 / +2
Query: 461 CS*SAVHHTAWLLHCIANDYRELS*TRFPTCYLGFLHNANEFFICVLHIFHGN*EPLLWP 282
C+ SAV HTA LLHC AND+RE S*T F TC LGF HNA+E FIC+LHIF+GN +PLLWP
Sbjct: 104 CAKSAVCHTARLLHCPANDFREFS*TGFFTCCLGFFHNADELFICLLHIFNGNKKPLLWP 283
Query: 281 DNPSWWCKIPCYWPWFCCAAQEFC*KLQAVC* 186
+N SWWCK+ YWPW CCAA EF *KLQA+C*
Sbjct: 284 NNSSWWCKVSGYWPWLCCAA*EFR*KLQAIC* 379
Score = 166 bits (358), Expect = 5e-041
Identities = 70/94 (74%), Positives = 81/94 (86%)
Frame = +2 / -1
Query: 185 PSIQPVIFSKTLVLHNKTTASSTVFCTTMKDCPAIVMALSSHGKCVEHR*KIHLHCEEIP 364
PSI PVIFS+TL+LHNK TASS + CTTMK+C AIVMA SH KCVE R*K+HLHCE+IP
Sbjct: 380 PSI*PVIFSETLMLHNKATASSPILCTTMKNCSAIVMAFCSH*KCVEDR*KVHLHCEKIP 201
Query: 365 DSR*ETLFKRVLYNHWQCSEEAKLYDELLIXNST 466
DSR*+T FKR+L NHWQ SEEA+LYD+LLI +ST
Sbjct: 200 DSR*KTQFKRIL*NHWQGSEEAELYDKLLI*HST 99
Score = 138 bits (295), Expect = 3e-032
Identities = 66/93 (70%), Positives = 73/93 (78%)
Frame = +1 / -3
Query: 187 *HTACNFQQNSCAAQQNHGQ*HGILHHHEGLSGHSNGS*FPWKMCRTQMKNSFAL*RNPR 366
*H ACNFQ+NS AAQQ+HGQ* LHHHE L GHSNG FP KMCR QMK+S AL*+NPR
Sbjct: 378 *HIACNFQRNSYAAQQSHGQ*PDTLHHHEELFGHSNGFLFPLKMCRRQMKSSSAL*KNPR 199
Query: 367 *QVGNLVQESSL*SLAMQ*RSQAV**TADXEQY 465
QV N VQE+SL SLA Q*RS+AV* TAD Q+
Sbjct: 198 QQVKNPVQENSLKSLAGQ*RSRAV*QTADLAQH 100
Score = 119 bits (254), Expect = 1e-026
Identities = 60/93 (64%), Positives = 63/93 (67%)
Frame = -1 / +1
Query: 465 VLFXIXXXXXXXXXXLHCQ*L*RTLLNKVSYLLSGISSQCK*IFHLCSTHFPWELRAITM 286
VL I L CQ* *R LLN V YLLSGI SQC+* FHL STHF WE +AITM
Sbjct: 100 VLC*ISSLSYSSASSLPCQ*F*RILLNWVFYLLSGIFSQCR*TFHLSSTHFQWEQKAITM 279
Query: 285 AGQSFMVVQNTVLLAVVLLCSTRVLLKITGCML 187
A Q FMVVQ+ LLAV LLCS RV LKITG ML
Sbjct: 280 AEQFFMVVQSIGLLAVALLCSIRVSLKITGYML 378
>gb|BM374437.2|BM374437 EBpi03_SQ003_J24_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ003_J24 5', mRNA sequence
Length = 573
Score = 210 bits (453), Expect = 4e-054
Identities = 82/141 (58%), Positives = 104/141 (73%)
Frame = -3 / +1
Query: 448 QFIIQLGFFTALPMIIENSLEQGFLPAIWDFFTMQMNFSSVFYTFSMGTKSHYYGRTILH 269
Q +QLGF ALPM++E LE+GF A+ DF MQ+ +SVF+TFS+GTK+HYYG+T+LH
Sbjct: 151 QSFVQLGFLMALPMMMEIGLERGFRTALSDFVLMQLQLASVFFTFSLGTKTHYYGKTLLH 330
Query: 268 GGAKYRATGRGFVVQHKSFAENYRLYARGHFIKAIELGIILTVYAAHSVIAKNTLVYIXX 89
GGA+YRATGRGFVV H FAENYRLY+R HF+K IEL I+L V+ + + YI
Sbjct: 331 GGAEYRATGRGFVVFHAKFAENYRLYSRSHFVKGIELMILLIVFEIFGQSYRGAIAYIFI 510
Query: 88 XISSWFLVVSWIMAPFAFNPS 26
S WF+VV+W+ APF FNPS
Sbjct: 511 TFSMWFMVVTWLFAPFLFNPS 573
Score = 105 bits (224), Expect = 2e-022
Identities = 55/103 (53%), Positives = 63/103 (61%)
Frame = +3 / -2
Query: 141 TVNIIPSSIAFMKWPLAYSL*FSAKLLCCTTKPRPVARYFAPP*RIVRP**WLLVPMENV 320
T++ I +S+ KW YS *FSA L TT PRPVA Y APP V P** +LVP ENV
Sbjct: 458 TISKIINSMPLTKWLREYSR*FSANLAWNTTNPRPVALYSAPPCSSVFP***VLVPRENV 279
Query: 321 *NTDEKFICIVKKSQIAGRKPCSREFSIIIGNAVKKPSCMMNC 449
TD CI KS A P SR SIIIG+A+KKPSC +C
Sbjct: 278 KKTDAN*SCISTKSLNAVLNPLSRPISIIIGSAIKKPSCTNDC 150
>gb|CA031522.1|CA031522 HX10D22r HX Hordeum vulgare subsp. vulgare cDNA clone HX10D22
5-PRIME, mRNA sequence
Length = 478
Score = 184 bits (396), Expect = 3e-046
Identities = 66/110 (60%), Positives = 87/110 (79%)
Frame = -3 / +3
Query: 331 SVFYTFSMGTKSHYYGRTILHGGAKYRATGRGFVVQHKSFAENYRLYARGHFIKAIELGI 152
SVF+TFS+GT++HY+GRTILHGGAKYRATGRGFVV+H FAENYRLY+R HF+K +E+ +
Sbjct: 3 SVFFTFSLGTRTHYFGRTILHGGAKYRATGRGFVVRHIKFAENYRLYSRSHFVKGLEVAL 182
Query: 151 ILTVYAAHSVIAKNTLVYIXXXISSWFLVVSWIMAPFAFNPSGFDWLKTV 2
+L ++ A+ + YI ISSWF+ +SW+ AP+ FNPSGF+W K V
Sbjct: 183 LLVIFLAYGFNNSGAIGYILLSISSWFMALSWLFAPYVFNPSGFEWQKVV 332
>gb|BF616755.1|BF616755 HVSMEc0012I18f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0012I18f, mRNA sequence
Length = 762
Score = 182 bits (391), Expect = 1e-045
Identities = 68/116 (58%), Positives = 87/116 (75%)
Frame = -3 / +3
Query: 349 MQMNFSSVFYTFSMGTKSHYYGRTILHGGAKYRATGRGFVVQHKSFAENYRLYARGHFIK 170
MQ+ +SV +TFS+GTK+H+YG+T+LHGGA+YRATGRGFVV H FAENYRLY+R HF+K
Sbjct: 6 MQLQLASVLFTFSLGTKTHWYGKTLLHGGAEYRATGRGFVVFHAKFAENYRLYSRSHFVK 185
Query: 169 AIELGIILTVYAAHSVIAKNTLVYIXXXISSWFLVVSWIMAPFAFNPSGFDWLKTV 2
IEL I+L V+ + + YI S WF+VV+W+ APF FNPSGF+W K V
Sbjct: 186 GIELMILLIVFEIFGQSYRGAIAYIFITFSMWFMVVTWLFAPFLFNPSGFEWQKIV 353
>gb|BE559011.2|BE559011 HV_CEb0022E12f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0022E12f, mRNA sequence
Length = 730
Score = 156 bits (335), Expect(2) = 1e-039
Identities = 59/96 (61%), Positives = 79/96 (82%)
Frame = -3 / +2
Query: 424 FTALPMIIENSLEQGFLPAIWDFFTMQMNFSSVFYTFSMGTKSHYYGRTILHGGAKYRAT 245
FTA+PMI+ E G + AI+ F TMQ+ F S+F+TFS+GT++HY+GRTILHGGAK+RAT
Sbjct: 17 FTAVPMIMGFISELGLMKAIFSFITMQLQFCSLFFTFSLGTRTHYFGRTILHGGAKHRAT 196
Query: 244 GRGFVVQHKSFAENYRLYARGHFIKAIELGIILTVY 137
GRGFVV+H FA+NYRLY+R HF+KA+E+ ++L Y
Sbjct: 197 GRGFVVRHIKFADNYRLYSRSHFVKALEVALLLIAY 304
Score = 26.3 bits (51), Expect(2) = 1e-039
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = -3 / +1
Query: 82 SSWFLVVSWIMAPFAF 35
++WF V+ W AP+ F
Sbjct: 361 NTWFKVIYWTFAPYIF 408
>gb|AV836635.1|AV836635 AV836635 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare seedling leaves second leaf stage Hordeum
vulgare subsp. vulgare cDNA clone basd19k01, mRNA
sequence
Length = 644
Score = 161 bits (347), Expect = 2e-039
Identities = 63/95 (66%), Positives = 76/95 (80%)
Frame = -3 / +2
Query: 454 NQQFIIQLGFFTALPMIIENSLEQGFLPAIWDFFTMQMNFSSVFYTFSMGTKSHYYGRTI 275
N QF+ Q+G FTA+PMI+ LE+G L A F TMQ SVF+TFS+GT++HY+GRTI
Sbjct: 359 NTQFLFQIGVFTAIPMILGFILEEGVLTAFVSFITMQFQLCSVFFTFSLGTRTHYFGRTI 538
Query: 274 LHGGAKYRATGRGFVVQHKSFAENYRLYARGHFIK 170
LHGGAKYRATGRGFVV+H FAENYRLY+R HF+K
Sbjct: 539 LHGGAKYRATGRGFVVRHIKFAENYRLYSRSHFVK 643
>gb|BU982241.1|BU982241 HA25P01r HA Hordeum vulgare subsp. vulgare cDNA clone HA25P01
5-PRIME, mRNA sequence
Length = 300
Score = 140 bits (301), Expect = 4e-033
Identities = 53/88 (60%), Positives = 67/88 (76%)
Frame = -3 / +3
Query: 448 QFIIQLGFFTALPMIIENSLEQGFLPAIWDFFTMQMNFSSVFYTFSMGTKSHYYGRTILH 269
Q + QLG LPM++E LE+GF A+ +F MQ+ +SVF+TF +GTK+HYYGRTILH
Sbjct: 33 QSVFQLGLLLVLPMVMEVGLEKGFRTAVGEFIIMQLQLASVFFTFQLGTKTHYYGRTILH 212
Query: 268 GGAKYRATGRGFVVQHKSFAENYRLYAR 185
GGAKYR TGRGFVV H FA+NY +Y+R
Sbjct: 213 GGAKYRPTGRGFVVYHAKFADNYHMYSR 296
>gb|BG369637.1|BG369637 HVSMEi0025E14f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0025E14f, mRNA sequence
Length = 725
Score = 133 bits (284), Expect = 8e-031
Identities = 51/91 (56%), Positives = 62/91 (68%)
Frame = -3 / +2
Query: 274 LHGGAKYRATGRGFVVQHKSFAENYRLYARGHFIKAIELGIILTVYAAHSVIAKNTLVYI 95
LHGGA+YRATGRGF+ H FAENYRLY+R HF+K IEL I+L V+ + + YI
Sbjct: 2 LHGGAEYRATGRGFLGFHAKFAENYRLYSRSHFVKGIELMILLIVFEIFRQSYRGAIAYI 181
Query: 94 XXXISSWFLVVSWIMAPFAFNPSGFDWLKTV 2
S WF+V +W+ APF FNPSGF W K V
Sbjct: 182 FITFSMWFMVATWLFAPFLFNPSGFQWQKIV 274
>gb|AV932586.1|AV932586 AV932586 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal1e06 5', mRNA sequence
Length = 582
Score = 112 bits (239), Expect = 1e-024
Identities = 43/69 (62%), Positives = 56/69 (81%)
Frame = -3 / +1
Query: 448 QFIIQLGFFTALPMIIENSLEQGFLPAIWDFFTMQMNFSSVFYTFSMGTKSHYYGRTILH 269
Q +QLGF ALPM++E LE+GF A+ DF MQ+ +SVF+TFS+GTK+HYYG+T+LH
Sbjct: 376 QSFVQLGFLMALPMMMEIGLERGFRTALSDFVLMQLQLASVFFTFSLGTKTHYYGKTLLH 555
Query: 268 GGAKYRATG 242
GGA+YRATG
Sbjct: 556 GGAEYRATG 582
>gb|AV934137.1|AV934137 AV934137 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal11c09 5', mRNA sequence
Length = 589
Score = 107 bits (228), Expect = 4e-023
Identities = 41/67 (61%), Positives = 54/67 (80%)
Frame = -3 / +1
Query: 448 QFIIQLGFFTALPMIIENSLEQGFLPAIWDFFTMQMNFSSVFYTFSMGTKSHYYGRTILH 269
Q +QLGF ALPM++E LE+GF A+ DF MQ+ +SVF+TFS+GTK+HYYG+T+LH
Sbjct: 388 QSFVQLGFLMALPMMMEIGLERGFRTALSDFVLMQLQLASVFFTFSLGTKTHYYGKTLLH 567
Query: 268 GGAKYRA 248
GGA+YRA
Sbjct: 568 GGAEYRA 588
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 212,966,663
Number of Sequences: 312970
Number of extensions: 3085575
Number of successful extensions: 66964
Number of sequences better than 1.0e-020: 17
length of database: 58,378,179
effective HSP length: 50
effective length of database: 42,729,679
effective search space used: 4657535011
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)