TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCL35a05.yg.2.1
(567 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA015088.1|CA015088 HT13D15r HT Hordeum vulgare subsp. v... 140 6e-038
>gb|CA015088.1|CA015088 HT13D15r HT Hordeum vulgare subsp. vulgare cDNA clone HT13D15
5-PRIME, mRNA sequence
Length = 627
Score = 140 bits (301), Expect(2) = 6e-038
Identities = 57/126 (45%), Positives = 78/126 (61%)
Frame = -3 / +3
Query: 448 EXXXVLTGCIDGXLSVAKLAXXYHXXXXXXXXXVALSKFTTLLNTSYIDDPVIVFGEDTK 269
E VL C+DG L +AK++ +H V+L KFTTLLNTS +++PV FG+D K
Sbjct: 3 EHEEVLLTCVDGFLGIAKISAFHHLEDVLDDLVVSLCKFTTLLNTSLVEEPVTAFGDDLK 182
Query: 268 ARMATEAVFTIATAYGDHIRSGWRNIIDCILXXHKIGLLPGRLXXXXXXXXXXXXXSLPG 89
AR+ATE +F IA YG +IR+GWRN++DCIL HK+GLLP R+ ++ G
Sbjct: 183 ARLATETLFIIANKYGHYIRTGWRNVLDCILRLHKLGLLPARVASDAADDSEVSAETVQG 362
Query: 88 KHTSSA 71
K S+
Sbjct: 363 KPVPSS 380
Score = 36.3 bits (73), Expect(2) = 6e-038
Identities = 16/31 (51%), Positives = 20/31 (64%)
Frame = -3 / +3
Query: 94 PGKHTSSAPQVLPISTPRKTYGLMGRFSQLL 2
P + S + + TPRK+ GLMGRFSQLL
Sbjct: 366 PVPSSISTSHIPVMGTPRKSSGLMGRFSQLL 458
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 183,901,001
Number of Sequences: 312970
Number of extensions: 2026817
Number of successful extensions: 19780
Number of sequences better than 1.0e-020: 1
length of database: 58,378,179
effective HSP length: 51
effective length of database: 42,416,709
effective search space used: 5811089133
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)