TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCG22g05.yg.2.1
(681 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF260175.2|BF260175 HVSMEf0021E22f Hordeum vulgare seedl... 189 6e-085
gb|BJ464341.1|BJ464341 BJ464341 K. Sato unpublished cDNA li... 92 4e-045
gb|BJ468873.1|BJ468873 BJ468873 K. Sato unpublished cDNA li... 90 8e-045
gb|BF261155.2|BF261155 HVSMEf0023O11f Hordeum vulgare seedl... 85 1e-040
gb|AW982539.2|AW982539 HVSMEg0003I16f Hordeum vulgare pre-a... 85 7e-037
gb|CB883350.1|CB883350 HQ01P13w HQ Hordeum vulgare subsp. v... 87 1e-036
gb|BE231106.2|BE231106 HVSMEg0016L07f Hordeum vulgare pre-a... 102 3e-036
gb|BU978248.1|BU978248 HA12N04r HA Hordeum vulgare subsp. v... 83 3e-035
gb|BG369831.1|BG369831 HVSMEi0026D06f Hordeum vulgare 20 DA... 90 1e-034
gb|AV914493.1|AV914493 AV914493 K. Sato unpublished cDNA li... 85 2e-034
gb|BM372335.2|BM372335 EBro03_SQ004_K20_R root, 3 week, wat... 85 7e-034
gb|BI960328.1|BI960328 HVSMEn0024D23f Hordeum vulgare rachi... 134 2e-033
gb|BM376497.2|BM376497 EBem05_SQ002_G09_R embryo, 14 DPA, n... 76 2e-033
gb|BI948363.1|BI948363 HVSMEl0009E03f Hordeum vulgare spike... 79 3e-033
gb|AL504416.1|AL504416 AL504416 Hordeum vulgare Barke roots... 141 4e-033
gb|BE558296.2|BE558296 HV_CEb0017B21f Hordeum vulgare seedl... 133 2e-031
gb|CA018896.1|CA018896 HV09P14r HV Hordeum vulgare subsp. v... 79 5e-031
gb|BQ765210.1|BQ765210 EBro03_SQ006_D18_R root, 3 week, wat... 130 7e-031
gb|BE196273.3|BE196273 HVSMEh0091N12f Hordeum vulgare 5-45 ... 71 2e-030
emb|AJ630116.2| Hordeum vulgare subsp. vulgare mRNA for Lys... 91 2e-030
gb|BU998515.1|BU998515 HI11E21r HI Hordeum vulgare subsp. v... 75 3e-030
gb|BE060551.2|BE060551 HVSMEg0012J19f Hordeum vulgare pre-a... 77 3e-030
gb|BQ765808.1|BQ765808 EBro03_SQ008_A09_R root, 3 week, wat... 78 4e-030
gb|BQ763863.1|BQ763863 EBro03_SQ005_I18_R root, 3 week, wat... 80 5e-030
gb|BG415111.1|BG415111 HVSMEk0005D06f Hordeum vulgare testa... 82 6e-030
gb|BE214948.1|BE214948 HV_CEb0005F01f Hordeum vulgare seedl... 126 8e-030
gb|BU970982.1|BU970982 HB16E06r BC Hordeum vulgare subsp. v... 130 9e-030
gb|CD663430.1|CD663430 UCRHV18_05bh04_b1 Drought-stressed D... 130 1e-029
gb|BF624846.2|BF624846 HVSMEa0017O11f Hordeum vulgare seedl... 77 2e-029
gb|BJ463669.1|BJ463669 BJ463669 K. Sato unpublished cDNA li... 128 3e-029
dbj|AB109213.1| Hordeum vulgare BRI1 gene for putative bras... 77 5e-029
gb|AL504994.1|AL504994 AL504994 Hordeum vulgare Barke roots... 72 5e-029
gb|BG414636.2|BG414636 HVSMEk0003C21f Hordeum vulgare testa... 71 6e-029
gb|CA029588.1|CA029588 HZ65K08r HZ Hordeum vulgare subsp. v... 71 9e-029
gb|BE558923.1|BE558923 HV_CEb0020M17f Hordeum vulgare seedl... 115 1e-028
gb|CB878333.1|CB878333 HP08C14T HP Hordeum vulgare subsp. v... 121 1e-028
gb|AF085167.1|AF085167 Hordeum vulgare receptor-like kinase... 76 1e-028
gb|BF263242.2|BF263242 HV_CEa0006D16f Hordeum vulgare seedl... 70 3e-028
gb|BU998735.1|BU998735 HI12A05r HI Hordeum vulgare subsp. v... 83 3e-028
gb|BQ462615.1|BQ462615 HI01H17T HI Hordeum vulgare subsp. v... 81 3e-028
gb|CA025815.1|CA025815 HZ53D16r HZ Hordeum vulgare subsp. v... 125 4e-028
gb|AF085166.1|AF085166 Hordeum vulgare receptor-like kinase... 76 4e-028
gb|BJ465430.1|BJ465430 BJ465430 K. Sato unpublished cDNA li... 87 5e-028
dbj|AB109215.1| Hordeum vulgare BRI1 gene for putative bras... 77 5e-028
gb|AV836502.1|AV836502 AV836502 K. Sato unpublished cDNA li... 80 7e-028
gb|BI959898.1|BI959898 HVSMEn0022E20f Hordeum vulgare rachi... 124 7e-028
gb|AV913572.1|AV913572 AV913572 K. Sato unpublished cDNA li... 81 1e-027
gb|AY943294.1| Hordeum vulgare subsp. vulgare clone BAC 673... 76 2e-027
gb|BM816134.1|BM816134 HC05B11_T3.ab1 HC Hordeum vulgare su... 74 3e-027
gb|BQ760957.1|BQ760957 EBro03_SQ003_P10_R root, 3 week, wat... 68 3e-027
gb|CA011685.1|CA011685 HT03E08r HT Hordeum vulgare subsp. v... 76 3e-027
gb|BJ463668.1|BJ463668 BJ463668 K. Sato unpublished cDNA li... 122 4e-027
gb|BE060160.1|BE060160 HVSMEg0011B12f Hordeum vulgare pre-a... 72 4e-027
gb|CA020283.1|CA020283 HV14N17r HV Hordeum vulgare subsp. v... 81 4e-027
gb|CA025597.1|CA025597 HZ52J19r HZ Hordeum vulgare subsp. v... 116 4e-027
gb|CK123771.1|CK123771 BES1824105f02 BES1824 Hordeum vulgar... 84 7e-027
gb|BG367673.1|BG367673 HVSMEi0013D04f Hordeum vulgare 20 DA... 121 7e-027
gb|BQ465859.1|BQ465859 HU04O06r HU Hordeum vulgare subsp. v... 79 8e-027
gb|BQ465158.1|BQ465158 HU02N02r HU Hordeum vulgare subsp. v... 80 8e-027
gb|BF260965.2|BF260965 HVSMEf0023G13f Hordeum vulgare seedl... 80 1e-026
gb|BF629671.2|BF629671 HVSMEb0013B13f Hordeum vulgare seedl... 82 1e-026
gb|CA031139.1|CA031139 HX09C02r HX Hordeum vulgare subsp. v... 72 2e-026
gb|BF618611.2|BF618611 HVSMEc0006K17f Hordeum vulgare seedl... 63 3e-026
gb|CA011695.1|CA011695 HT03E18r HT Hordeum vulgare subsp. v... 72 4e-026
gb|BF260669.2|BF260669 HVSMEf0022K01f Hordeum vulgare seedl... 114 4e-026
gb|BQ762476.1|BQ762476 EBro01_SQ005_P23 _R root, 3 week, hy... 104 1e-025
gb|CA024475.1|CA024475 HZ49G15r HZ Hordeum vulgare subsp. v... 84 1e-025
emb|AJ784275.3| Hordeum vulgare subsp. vulgare mRNA for put... 73 2e-025
gb|AV910535.1|AV910535 AV910535 K. Sato unpublished cDNA li... 116 2e-025
gb|CA031182.1|CA031182 HX09D22r HX Hordeum vulgare subsp. v... 70 3e-025
gb|BJ462905.1|BJ462905 BJ462905 K. Sato unpublished cDNA li... 68 4e-025
gb|BF261904.2|BF261904 HV_CEa0002I16f Hordeum vulgare seedl... 61 5e-025
gb|AV916201.1|AV916201 AV916201 K. Sato unpublished cDNA li... 77 5e-025
gb|BF260967.2|BF260967 HVSMEf0023G15f Hordeum vulgare seedl... 78 7e-025
gb|BG414953.2|BG414953 HVSMEk0004G13f Hordeum vulgare testa... 65 7e-025
gb|BG366077.2|BG366077 HVSMEi0005C13f Hordeum vulgare 20 DA... 75 7e-025
gb|BM816713.1|BM816713 HC114E03_SK.ab1 HC Hordeum vulgare s... 56 1e-024
gb|AV924450.1|AV924450 AV924450 K. Sato unpublished cDNA li... 76 2e-024
gb|CA023741.1|CA023741 HZ47E09r HZ Hordeum vulgare subsp. v... 78 2e-024
gb|CA032262.1|CA032262 HX12I03r HX Hordeum vulgare subsp. v... 75 3e-024
gb|BE231086.2|BE231086 HVSMEg0016H13f Hordeum vulgare pre-a... 66 6e-024
gb|AV925996.1|AV925996 AV925996 K. Sato unpublished cDNA li... 83 8e-024
gb|CB877449.1|CB877449 HP04P08T HP Hordeum vulgare subsp. v... 110 1e-023
gb|BF617106.3|BF617106 HVSMEc0014J24f Hordeum vulgare seedl... 69 1e-023
gb|BQ465888.1|BQ465888 HU04P13r HU Hordeum vulgare subsp. v... 76 1e-023
gb|BG300180.2|BG300180 HVSMEb0010M14f Hordeum vulgare seedl... 75 1e-023
gb|BE216031.3|BE216031 HV_CEb0009C21f Hordeum vulgare seedl... 73 1e-023
gb|AJ427599.1|AJ427599 AJ427599 Hordeum vulgare subsp. vulg... 77 2e-023
gb|BI954170.1|BI954170 HVSMEm0016H15f Hordeum vulgare green... 76 2e-023
gb|BJ462433.1|BJ462433 BJ462433 K. Sato unpublished cDNA li... 85 3e-023
gb|DW474948.1|DW474948 25-u184 Subtracted libraries from ep... 73 3e-023
gb|BF264460.2|BF264460 HV_CEa0009H19f Hordeum vulgare seedl... 108 5e-023
gb|BI954047.1|BI954047 HVSMEm0015P18f Hordeum vulgare green... 75 5e-023
gb|BJ471768.1|BJ471768 BJ471768 K. Sato unpublished cDNA li... 73 7e-023
gb|AV914570.1|AV914570 AV914570 K. Sato unpublished cDNA li... 107 9e-023
gb|CA030901.1|CA030901 HX08H10r HX Hordeum vulgare subsp. v... 90 9e-023
gb|BU972150.1|BU972150 HB20M05r BC Hordeum vulgare subsp. v... 79 9e-023
gb|BU985927.1|BU985927 HF09B02r HF Hordeum vulgare subsp. v... 76 9e-023
gb|BG367586.2|BG367586 HVSMEi0012M21f Hordeum vulgare 20 DA... 103 1e-022
gb|CB879642.1|CB879642 HP03C03w HP Hordeum vulgare subsp. v... 84 1e-022
gb|CA003563.1|CA003563 HS14N23r HS Hordeum vulgare subsp. v... 74 2e-022
gb|BG415671.2|BG415671 HVSMEk0007G10f Hordeum vulgare testa... 71 3e-022
gb|BJ547296.1|BJ547296 BJ547296 K. Sato unpublished cDNA li... 65 3e-022
gb|BJ547039.1|BJ547039 BJ547039 K. Sato unpublished cDNA li... 65 3e-022
gb|AV932635.1|AV932635 AV932635 K. Sato unpublished cDNA li... 65 3e-022
gb|BQ764108.1|BQ764108 EBro03_SQ006_E12_R root, 3 week, wat... 61 4e-022
gb|BQ765045.1|BQ765045 EBca01_SQ005_K17_R carpel, pre-anthe... 67 4e-022
gb|BI958203.1|BI958203 HVSMEn0013N15f Hordeum vulgare rachi... 68 6e-022
gb|BU988481.1|BU988481 HF17M10r HF Hordeum vulgare subsp. v... 78 6e-022
gb|AV926340.1|AV926340 AV926340 K. Sato unpublished cDNA li... 73 8e-022
gb|BE215415.2|BE215415 HV_CEb0006L19f Hordeum vulgare seedl... 68 8e-022
gb|AF085164.1|AF085164 Hordeum vulgare receptor-like kinase... 69 1e-021
gb|BI949494.1|BI949494 HVSMEl0014E01f Hordeum vulgare spike... 69 1e-021
gb|AV923555.1|AV923555 AV923555 K. Sato unpublished cDNA li... 63 1e-021
gb|CA008493.1|CA008493 HU11C07r HU Hordeum vulgare subsp. v... 51 2e-021
gb|AV836461.1|AV836461 AV836461 K. Sato unpublished cDNA li... 65 2e-021
gb|BM372170.2|BM372170 EBro03_SQ004_D12_R root, 3 week, wat... 67 2e-021
gb|BI953871.1|BI953871 HVSMEm0015C01f Hordeum vulgare green... 99 4e-021
gb|BJ450092.1|BJ450092 BJ450092 K. Sato unpublished cDNA li... 98 5e-021
gb|BI778695.2|BI778695 EBro01_SQ001_C01_R root, 3 week, hyd... 95 5e-021
gb|CB877039.1|CB877039 HP03F15T HP Hordeum vulgare subsp. v... 46 7e-021
gb|BF256991.2|BF256991 HVSMEf0011J01f Hordeum vulgare seedl... 77 7e-021
>gb|BF260175.2|BF260175 HVSMEf0021E22f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0021E22f, mRNA sequence
Length = 792
Score = 189 bits (408), Expect(2) = 6e-085
Identities = 78/85 (91%), Positives = 83/85 (97%)
Frame = -3 / +2
Query: 271 GADNEKITSWLKRLEIAEDSAKGIEYLHTGCSPTIIHRDLKSSNILLDKNMRAKVADFGL 92
G ++ KITSW+KRLEIAED+AKGIEYLHTGCSPTIIHRD+KSSNILLDKNMRAKVADFGL
Sbjct: 185 GPNDVKITSWVKRLEIAEDAAKGIEYLHTGCSPTIIHRDVKSSNILLDKNMRAKVADFGL 364
Query: 91 SKPAVDGSHVSSIVRGTVGYLDPEY 17
SKPAVDGSHVSSIVRGTVGYLDPEY
Sbjct: 365 SKPAVDGSHVSSIVRGTVGYLDPEY 439
Score = 145 bits (312), Expect(2) = 6e-085
Identities = 59/65 (90%), Positives = 62/65 (95%)
Frame = -3 / +2
Query: 451 VKLLTNDSYQGIREFLNEVTLLSRIHHRHLVTFLGYSQQDGKNILVYEFMHNGTLKEHLR 272
VKLLTNDSYQGIR+FLNEV LLSRIHHR+LVTFLGYSQQDGKNILVYEFMHNGTLKEHLR
Sbjct: 2 VKLLTNDSYQGIRQFLNEVALLSRIHHRNLVTFLGYSQQDGKNILVYEFMHNGTLKEHLR 181
Query: 271 GADNE 257
G N+
Sbjct: 182 GGPND 196
Score = 133 bits (286), Expect(2) = 3e-054
Identities = 58/87 (66%), Positives = 64/87 (73%)
Frame = +3 / -1
Query: 18 YSGSRYPTVPRTILDT*DPSTAGFESPKSATFAXXXXXXXXXXXXXXXWMIVGEHPVWRY 197
YSGSRYPTVPRT+LDT*DPSTAGF+ PKSATFA ++VGEHPVWRY
Sbjct: 438 YSGSRYPTVPRTMLDT*DPSTAGFDRPKSATFALMFLSSKMLLLLTSL*IMVGEHPVWRY 259
Query: 198 SIPFAESSAISRRFSQLVIFSLSAPRR 278
SIPFA SSAISRR +QLVIF+ P R
Sbjct: 258 SIPFAASSAISRRLTQLVIFTSLGPPR 178
Score = 130 bits (279), Expect = 7e-030
Identities = 58/81 (71%), Positives = 63/81 (77%)
Frame = +3 / -1
Query: 210 AESSAISRRFSQLVIFSLSAPRRCSFSVPLCMNSYTSMFLPSC*L*PRNVTRCL*CILES 389
A S+ R ++ SL PRRCSFSVPLCMNSYTSMF PSC*L*PR VT+ L*CILES
Sbjct: 243 ASSAISRRLTQLVIFTSLGPPRRCSFSVPLCMNSYTSMFFPSC*L*PRKVTKFL*CILES 64
Query: 390 NVTSFKNSLIP*YESFVRSLT 452
N TSFKN +P*YESFVRSLT
Sbjct: 63 NATSFKNCRMP*YESFVRSLT 1
Score = 126 bits (269), Expect(2) = 4e-050
Identities = 54/86 (62%), Positives = 63/86 (73%)
Frame = +2 / -3
Query: 17 VLWVQVSNCPSNYT*HMRPIHCRFRKPKVCHFCSHVLV*ENVTALQVSMDDCWGASRVEI 196
VLW+++ N +NY *+MRPI RF KVCHFC HVLV NVT L VS++ WGASRVE+
Sbjct: 439 VLWIKIPNRSTNYA*YMRPIDRRF**AKVCHFCPHVLVK*NVTTLNVSVNYGWGASRVEV 260
Query: 197 LYTFRRIFCNLKTLQPASYLFIISST 274
LYTFR IFC LK L PASY II S+
Sbjct: 259 LYTFRSIFCYLKALNPASYFHIIRSS 182
Score = 109 bits (233), Expect(2) = 5e-048
Identities = 47/80 (58%), Positives = 56/80 (70%)
Frame = -2 / +1
Query: 257 KDN*LAEAS*DCRRFCERYRVSPHGMLPNNHP*RPEEQ*HSPRQEHESKSGRLWAFETCS 78
++N*L A *D RR CERYRV PHGMLPN++ R E *H QEHE KSGRLW +TC
Sbjct: 199 ENN*LG*AP*DSRRCCERYRVPPHGMLPNHNSQRR*E**HFT*QEHEGKSGRLWPIKTCG 378
Query: 77 GWVSCVKYSSRDSWIPGPRV 18
WVSC+K+SS + W+ RV
Sbjct: 379 RWVSCIKHSSWNGWVS*SRV 438
Score = 101 bits (215), Expect(2) = 5e-048
Identities = 45/68 (66%), Positives = 55/68 (80%)
Frame = -2 / +1
Query: 452 SQTSHE*LVSGNQRILE*GDIAFQNTS*TPGYIPWLQSARWQKHTSV*VHA*WDTKRAPS 273
SQ SH+*L+SG+ ILE*G +AF+NTS* G +PWLQSAR ++HT V*VHA W+TKRAPS
Sbjct: 1 SQASHK*LISGHPTILE*GGVAFENTS*ELGNLPWLQSARREEHTCV*VHAQWNTKRAPS 180
Query: 272 WS***KDN 249
W ** +N
Sbjct: 181 WRT**CEN 204
Score = 100 bits (212), Expect(2) = 1e-044
Identities = 53/85 (62%), Positives = 61/85 (71%)
Frame = -1 / +3
Query: 270 ELIMKR*LAG*SVLRLQKILRKV*SISTRDAPQQSSIET*RAVTFS*TRT*EQKWQTLGF 91
+L+M +*LAG S LR QK+LRKV*S STRDAPQ ET R VTF TRT* QKWQTL +
Sbjct: 186 DLMM*K*LAGLSALR*QKMLRKV*STSTRDAPQP*FTETLRVVTFYLTRT*GQKWQTLAY 365
Query: 90 RNLQWMGLMCQV*FEGQLDTWTQST 16
+NL+ MGLM Q *F +L QST
Sbjct: 366 QNLRSMGLMYQA*FVERLGILIQST 440
Score = 100 bits (212), Expect(2) = 1e-044
Identities = 45/64 (70%), Positives = 50/64 (78%)
Frame = -1 / +3
Query: 450 SNFSRMTRIRESENS*MR*HCFPEYIIDTWLHSLVTVSKMAKTY*CMSSCIMGH*KSTFV 271
S+FS+MT IR S+NS*MR CF EYII TW SLVTVSK +TY CMSSC M H*KSTFV
Sbjct: 3 SSFSQMTHIRASDNS*MRWRCFREYIIGTW*PSLVTVSKTGRTYLCMSSCTMEH*KSTFV 182
Query: 270 ELIM 259
E +M
Sbjct: 183 EDLM 194
Score = 98.2 bits (208), Expect(2) = 3e-054
Identities = 47/64 (73%), Positives = 50/64 (78%)
Frame = +2 / -3
Query: 260 IISSTKVLF*CPIMHELIH*YVFAILLTVTKECNQVSMMYSGKQCHLIQEFSDSLIRVIR 439
I SSTKVLF*C I+HELIH YV +LLTVTKE QV MMYS KQ HLIQE SD+LI VI
Sbjct: 193 IRSSTKVLF*CSIVHELIHKYVLPVLLTVTKEGYQVPMMYSRKQRHLIQELSDALI*VIC 14
Query: 440 EKFD 451
EK D
Sbjct: 13 EKLD 2
Score = 92.3 bits (195), Expect(2) = 4e-050
Identities = 43/64 (67%), Positives = 44/64 (68%)
Frame = +1 / -2
Query: 259 HYQLHEGALLVSHYA*THTLVCFCHLADCNQGM*PGVYDVFWKAMSPHSRIL*FPDTSHS 438
H LHEGALLV H A*THT VC LADCNQG P YDVF KA PHSRI+ PD SH
Sbjct: 194 H*VLHEGALLVFHCA*THTQVCSSRLADCNQGRLPSSYDVFSKATPPHSRIVGCPDMSHL 15
Query: 439 *EV* 450
*E *
Sbjct: 14 *EA* 3
>gb|BJ464341.1|BJ464341 BJ464341 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags33o06 5', mRNA sequence
Length = 650
Score = 91.8 bits (194), Expect(3) = 4e-045
Identities = 37/75 (49%), Positives = 50/75 (66%)
Frame = -3 / +3
Query: 475 LADGREIAVKLLTNDSYQGIREFLNEVTLLSRIHHRHLVTFLGYSQQDGKNILVYEFMHN 296
L D ++AVK S QG+ EF E+ LLSR+ HRHLV+ +GY + + ILVYE+M N
Sbjct: 24 LRDDTKVAVKRGNPKSQQGLNEFRTEIELLSRLRHRHLVSLIGYCDERNEMILVYEYMEN 203
Query: 295 GTLKEHLRGADNEKI 251
GT+K HL G+DN +
Sbjct: 204 GTVKSHLYGSDNPSL 248
Score = 88.1 bits (186), Expect(3) = 4e-045
Identities = 35/54 (64%), Positives = 45/54 (83%)
Frame = -3 / +3
Query: 247 SWLKRLEIAEDSAKGIEYLHTGCSPTIIHRDLKSSNILLDKNMRAKVADFGLSK 86
+W +RLEI +A+G+ YLHTG + IIHRD+KS+NILLD+N+ AKVADFGLSK
Sbjct: 249 NWKQRLEICIGAARGLHYLHTGSAKAIIHRDVKSANILLDENLLAKVADFGLSK 410
Score = 40.5 bits (82), Expect(3) = 4e-045
Identities = 14/23 (60%), Positives = 19/23 (82%)
Frame = -3 / +3
Query: 85 PAVDGSHVSSIVRGTVGYLDPEY 17
P +D +HVS+ V+G+ GYLDPEY
Sbjct: 417 PELDQTHVSTAVKGSFGYLDPEY 485
>gb|BJ468873.1|BJ468873 BJ468873 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd27k16 5', mRNA sequence
Length = 528
Score = 90.0 bits (190), Expect(3) = 8e-045
Identities = 36/71 (50%), Positives = 48/71 (67%)
Frame = -3 / +3
Query: 475 LADGREIAVKLLTNDSYQGIREFLNEVTLLSRIHHRHLVTFLGYSQQDGKNILVYEFMHN 296
L D ++AVK S+QG+REF E+ LLS + HRHLV+ +GY + + ILVYE+M
Sbjct: 21 LQDSTKVAVKRGNQKSHQGLREFRTEIELLSGLRHRHLVSLIGYCDEQNEMILVYEYMEK 200
Query: 295 GTLKEHLRGAD 263
GTLK HL G+D
Sbjct: 201 GTLKSHLYGSD 233
Score = 89.0 bits (188), Expect(3) = 8e-045
Identities = 35/54 (64%), Positives = 46/54 (85%)
Frame = -3 / +3
Query: 247 SWLKRLEIAEDSAKGIEYLHTGCSPTIIHRDLKSSNILLDKNMRAKVADFGLSK 86
SW KR+EI +A+G+ YLHTG + +IIHRD+KS+NILLD+N+ AKV+DFGLSK
Sbjct: 246 SWKKRVEICIGAARGLHYLHTGFAKSIIHRDVKSANILLDENLMAKVSDFGLSK 407
Score = 40.5 bits (82), Expect(3) = 8e-045
Identities = 14/23 (60%), Positives = 19/23 (82%)
Frame = -3 / +3
Query: 85 PAVDGSHVSSIVRGTVGYLDPEY 17
P +D +HVS+ V+G+ GYLDPEY
Sbjct: 414 PELDQTHVSTAVKGSFGYLDPEY 482
>gb|BF261155.2|BF261155 HVSMEf0023O11f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0023O11f, mRNA sequence
Length = 748
Score = 84.9 bits (179), Expect(3) = 1e-040
Identities = 35/61 (57%), Positives = 44/61 (72%)
Frame = -3 / +3
Query: 247 SWLKRLEIAEDSAKGIEYLHTGCSPTIIHRDLKSSNILLDKNMRAKVADFGLSKPAVDGS 68
SW +RLEI +A+G+ YLHTG TIIHRD+K++NILLD+ AKV+DFGLSK
Sbjct: 405 SWRQRLEICIGAARGLHYLHTGAKHTIIHRDVKTTNILLDEKWVAKVSDFGLSKTGPSMD 584
Query: 67 H 65
H
Sbjct: 585 H 587
Score = 77.1 bits (162), Expect(3) = 1e-040
Identities = 30/71 (42%), Positives = 48/71 (67%)
Frame = -3 / +3
Query: 460 EIAVKLLTNDSYQGIREFLNEVTLLSRIHHRHLVTFLGYSQQDGKNILVYEFMHNGTLKE 281
++A+K S QGI EF E+ +LS++ HRHLV+ +GY ++ + ILVY++M +GTL+E
Sbjct: 195 KVAIKRGNPLSEQGIHEFQTEIEMLSKLRHRHLVSLIGYCEEKNEMILVYDYMAHGTLRE 374
Query: 280 HLRGADNEKIT 248
HL N ++
Sbjct: 375 HLYKTQNAPLS 407
Score = 43.2 bits (88), Expect(3) = 1e-040
Identities = 14/23 (60%), Positives = 21/23 (91%)
Frame = -3 / +3
Query: 85 PAVDGSHVSSIVRGTVGYLDPEY 17
P++D +HVS++V+G+ GYLDPEY
Sbjct: 573 PSMDHTHVSTVVKGSFGYLDPEY 641
>gb|AW982539.2|AW982539 HVSMEg0003I16f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0003I16f, mRNA sequence
Length = 933
Score = 84.9 bits (179), Expect(3) = 7e-037
Identities = 36/59 (61%), Positives = 41/59 (69%)
Frame = -3 / +3
Query: 244 WLKRLEIAEDSAKGIEYLHTGCSPTIIHRDLKSSNILLDKNMRAKVADFGLSKPAVDGS 68
W RL IA SAKG+ YLH C P IIHRD+K+SNILLD AKVADFGL+K D +
Sbjct: 198 WPSRLRIALGSAKGLAYLHEDCHPKIIHRDIKASNILLDYRCEAKVADFGLAKLTSDNN 374
Score = 75.8 bits (159), Expect(3) = 7e-037
Identities = 30/58 (51%), Positives = 41/58 (70%)
Frame = -3 / +3
Query: 442 LTNDSYQGIREFLNEVTLLSRIHHRHLVTFLGYSQQDGKNILVYEFMHNGTLKEHLRG 269
L + S QG REF EV ++SR+HH+HLVT +GY + K +LVYEF+ N TL+ H+ G
Sbjct: 3 LRDGSGQGEREFQAEVDIISRVHHKHLVTLVGYCISEDKRLLVYEFVPNNTLEFHIHG 176
Score = 31.8 bits (63), Expect(3) = 7e-037
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -3 / +3
Query: 76 DGSHVSSIVRGTVGYLDPEY 17
+ +HVS+ V GT GYL PEY
Sbjct: 369 NNTHVSTRVMGTFGYLAPEY 428
>gb|CB883350.1|CB883350 HQ01P13w HQ Hordeum vulgare subsp. vulgare cDNA clone HQ01P13
3-PRIME, mRNA sequence
Length = 617
Score = 87.2 bits (184), Expect(2) = 1e-036
Identities = 34/60 (56%), Positives = 45/60 (75%)
Frame = -3 / +1
Query: 253 ITSWLKRLEIAEDSAKGIEYLHTGCSPTIIHRDLKSSNILLDKNMRAKVADFGLSKPAVD 74
+ W R++I+ SA+GI YLH C P IIHRD+KSSNIL+D N A+VADFGL++ A+D
Sbjct: 406 VLDWPARVKISAGSARGIAYLHEDCHPRIIHRDIKSSNILVDNNFEAQVADFGLARLAMD 585
Score = 86.3 bits (182), Expect(2) = 1e-036
Identities = 35/69 (50%), Positives = 48/69 (69%)
Frame = -3 / +1
Query: 475 LADGREIAVKLLTNDSYQGIREFLNEVTLLSRIHHRHLVTFLGYSQQDGKNILVYEFMHN 296
L +GRE+A+K L + S QG REF EV ++SR+HHRHLV+ +GY + +LVY+F+ N
Sbjct: 187 LPEGREVAIKKLKDGSGQGEREFQAEVEIISRVHHRHLVSLVGYCISGDQRLLVYDFVPN 366
Query: 295 GTLKEHLRG 269
TL HL G
Sbjct: 367 DTLHYHLHG 393
>gb|BE231106.2|BE231106 HVSMEg0016L07f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0016L07f, mRNA sequence
Length = 908
Score = 102 bits (218), Expect(3) = 3e-036
Identities = 42/63 (66%), Positives = 51/63 (80%)
Frame = -3 / +3
Query: 265 DNEKITSWLKRLEIAEDSAKGIEYLHTGCSPTIIHRDLKSSNILLDKNMRAKVADFGLSK 86
DN++ SW +RL+IA D + GIEYLH G P +IHRDLKS+NILLD++MRAKVADFGLSK
Sbjct: 141 DNKRSLSWQERLQIAHDVSHGIEYLHEGAVPPVIHRDLKSANILLDESMRAKVADFGLSK 320
Query: 85 PAV 77
V
Sbjct: 321 EEV 329
Score = 60.6 bits (126), Expect(3) = 3e-036
Identities = 24/51 (47%), Positives = 35/51 (68%)
Frame = -3 / +3
Query: 400 EVTLLSRIHHRHLVTFLGYSQQDGKNILVYEFMHNGTLKEHLRGADNEKIT 248
EV LLSR+HHR+LV +GY + G++IL+YE+M NG L L G + ++
Sbjct: 9 EVILLSRLHHRNLVNLVGYCVEKGQHILMYEYMSNGNLATLLYGDNKRSLS 161
Score = 26.7 bits (52), Expect(3) = 3e-036
Identities = 7/13 (53%), Positives = 12/13 (92%)
Frame = -3 / +3
Query: 52 VRGTVGYLDPEYL 14
++GT GY+DP+Y+
Sbjct: 351 LKGTYGYMDPDYM 389
>gb|BU978248.1|BU978248 HA12N04r HA Hordeum vulgare subsp. vulgare cDNA clone HA12N04
5-PRIME, mRNA sequence
Length = 601
Score = 82.6 bits (174), Expect(3) = 3e-035
Identities = 32/54 (59%), Positives = 41/54 (75%)
Frame = -3 / +3
Query: 247 SWLKRLEIAEDSAKGIEYLHTGCSPTIIHRDLKSSNILLDKNMRAKVADFGLSK 86
SW R++I +AKGI YLH G P ++HRD+KSSNILLDK +KV+DFGL+K
Sbjct: 333 SWDARMDIVLGTAKGITYLHEGLEPKVVHRDIKSSNILLDKRWNSKVSDFGLAK 494
Score = 75.8 bits (159), Expect(3) = 3e-035
Identities = 32/68 (47%), Positives = 44/68 (64%)
Frame = -3 / +3
Query: 472 ADGREIAVKLLTNDSYQGIREFLNEVTLLSRIHHRHLVTFLGYSQQDGKNILVYEFMHNG 293
ADGR++AVK L N+ Q REF EV + R+ H++LV LGY + ILVYE++ NG
Sbjct: 105 ADGRQVAVKNLLNNRGQAEREFTVEVEAIGRVRHKNLVRLLGYCVEGAHRILVYEYVDNG 284
Query: 292 TLKEHLRG 269
L++ L G
Sbjct: 285 NLEQWLHG 308
Score = 28.6 bits (56), Expect(3) = 3e-035
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -3 / +3
Query: 76 DGSHVSSIVRGTVGYLDPEY 17
D ++V++ V GT GY+ PEY
Sbjct: 507 DSNYVTTRVMGTFGYVAPEY 566
>gb|BG369831.1|BG369831 HVSMEi0026D06f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0026D06f, mRNA sequence
Length = 502
Score = 89.5 bits (189), Expect(2) = 1e-034
Identities = 36/69 (52%), Positives = 49/69 (71%)
Frame = -3 / +3
Query: 475 LADGREIAVKLLTNDSYQGIREFLNEVTLLSRIHHRHLVTFLGYSQQDGKNILVYEFMHN 296
L DG ++AVK L + S QG REF EV ++SR+HH+HLVT +GY + K +LVYEF+ N
Sbjct: 123 LPDGTQVAVKQLRDGSGQGEREFQAEVDIISRVHHKHLVTLVGYCISEDKRLLVYEFVPN 302
Query: 295 GTLKEHLRG 269
TL+ H+ G
Sbjct: 303 NTLEFHIHG 329
Score = 77.1 bits (162), Expect(2) = 1e-034
Identities = 32/50 (64%), Positives = 35/50 (70%)
Frame = -3 / +3
Query: 244 WLKRLEIAEDSAKGIEYLHTGCSPTIIHRDLKSSNILLDKNMRAKVADFG 95
W RL IA SA G+ YLH C P IIHRD+K+SNILLD AKVADFG
Sbjct: 351 WPSRLRIALGSANGLAYLHEDCHPKIIHRDIKASNILLDYRCEAKVADFG 500
>gb|AV914493.1|AV914493 AV914493 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags6j14 5', mRNA sequence
Length = 437
Score = 84.9 bits (179), Expect(3) = 2e-034
Identities = 35/61 (57%), Positives = 44/61 (72%)
Frame = -3 / +1
Query: 247 SWLKRLEIAEDSAKGIEYLHTGCSPTIIHRDLKSSNILLDKNMRAKVADFGLSKPAVDGS 68
SW +RLEI +A+G+ YLHTG TIIHRD+K++NILLD+ AKV+DFGLSK
Sbjct: 145 SWRQRLEICIGAARGLHYLHTGAKHTIIHRDVKTTNILLDEKWVAKVSDFGLSKTGPSMD 324
Query: 67 H 65
H
Sbjct: 325 H 327
Score = 56.1 bits (116), Expect(3) = 2e-034
Identities = 19/37 (51%), Positives = 30/37 (81%)
Frame = -3 / +3
Query: 385 SRIHHRHLVTFLGYSQQDGKNILVYEFMHNGTLKEHL 275
S++ HRHLV+ +GY ++ + ILVY++M +GTL+EHL
Sbjct: 9 SKLRHRHLVSLIGYCEEKNEMILVYDYMAHGTLREHL 119
Score = 43.2 bits (88), Expect(3) = 2e-034
Identities = 14/23 (60%), Positives = 21/23 (91%)
Frame = -3 / +1
Query: 85 PAVDGSHVSSIVRGTVGYLDPEY 17
P++D +HVS++V+G+ GYLDPEY
Sbjct: 313 PSMDHTHVSTVVKGSFGYLDPEY 381
>gb|BM372335.2|BM372335 EBro03_SQ004_K20_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ004_K20 5', mRNA sequence
Length = 602
Score = 84.9 bits (179), Expect(3) = 7e-034
Identities = 31/54 (57%), Positives = 45/54 (83%)
Frame = -3 / +1
Query: 247 SWLKRLEIAEDSAKGIEYLHTGCSPTIIHRDLKSSNILLDKNMRAKVADFGLSK 86
+W +RL IA D+A+G+EYLH C+P+I+HRD+K+ NILLDKN+ ++DFGLS+
Sbjct: 175 TWEQRLYIALDAAQGLEYLHESCTPSIVHRDVKTPNILLDKNLVGVISDFGLSR 336
Score = 61.1 bits (127), Expect(3) = 7e-034
Identities = 25/55 (45%), Positives = 36/55 (65%)
Frame = -3 / +1
Query: 412 EFLNEVTLLSRIHHRHLVTFLGYSQQDGKNILVYEFMHNGTLKEHLRGADNEKIT 248
+FL EV LS++HH++LVT GY Q LVY+FM G L++ L+G D+ +T
Sbjct: 13 DFLPEVQTLSKVHHKNLVTLQGYCQNKKCLALVYDFMPRGNLQQLLKGGDDYSLT 177
Score = 36.3 bits (73), Expect(3) = 7e-034
Identities = 11/18 (61%), Positives = 16/18 (88%)
Frame = -3 / +1
Query: 70 SHVSSIVRGTVGYLDPEY 17
+H+S++ GT+GYLDPEY
Sbjct: 355 THISTVAAGTLGYLDPEY 408
>gb|BI960328.1|BI960328 HVSMEn0024D23f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0024D23f, mRNA sequence
Length = 652
Score = 134 bits (288), Expect(2) = 2e-033
Identities = 58/130 (44%), Positives = 82/130 (63%)
Frame = -3 / +3
Query: 475 LADGREIAVKLLTNDSYQGIREFLNEVTLLSRIHHRHLVTFLGYSQQDGKNILVYEFMHN 296
L GR IAVK L + G REF E+ + I HR+LV+ G+S N+L Y++M N
Sbjct: 168 LKSGRAIAVKRLYSQYNHGAREFETELETVGSIRHRNLVSLHGFSLSPNGNLLFYDYMEN 347
Query: 295 GTLKEHLRGADNEKITSWLKRLEIAEDSAKGIEYLHTGCSPTIIHRDLKSSNILLDKNMR 116
G+L + L G + W RL IA +A+G+ YLH C+P I+HRD+KSSNILLD++
Sbjct: 348 GSLWDLLHGPSKKVKLDWDTRLRIAVGAAQGLAYLHHDCNPRIVHRDVKSSNILLDEHFE 527
Query: 115 AKVADFGLSK 86
A ++DFG++K
Sbjct: 528 AHLSDFGIAK 557
Score = 28.1 bits (55), Expect(2) = 2e-033
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -3 / +3
Query: 70 SHVSSIVRGTVGYLDPEYLP 11
+H S+ V +GY+DP Y P
Sbjct: 576 THASTYVLXAIGYIDPGYSP 635
>gb|BM376497.2|BM376497 EBem05_SQ002_G09_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ002_G09 5', mRNA sequence
Length = 522
Score = 76.2 bits (160), Expect(3) = 2e-033
Identities = 32/69 (46%), Positives = 45/69 (65%)
Frame = -3 / +3
Query: 469 DGREIAVKLLTNDSYQGIREFLNEVTLLSRIHHRHLVTFLGYSQQDGKNILVYEFMHNGT 290
DG E+AVKLLT REF+ EV +LSR+HHR+LV +G + LV+E + NG+
Sbjct: 27 DGVEVAVKLLTGKHQNRDREFIAEVEMLSRLHHRNLVKMIGICVERRTRCLVFELVPNGS 206
Query: 289 LKEHLRGAD 263
++ HL G+D
Sbjct: 207 VESHLHGSD 233
Score = 75.3 bits (158), Expect(3) = 2e-033
Identities = 29/55 (52%), Positives = 42/55 (76%)
Frame = -3 / +3
Query: 235 RLEIAEDSAKGIEYLHTGCSPTIIHRDLKSSNILLDKNMRAKVADFGLSKPAVDG 71
R++IA +A+G+ YLH +P +IHRD K+SN+LL+ + AKVADFGL+K A +G
Sbjct: 264 RMKIALGAARGLAYLHEDANPHVIHRDFKASNVLLENDFTAKVADFGLAKEASEG 428
Score = 29.0 bits (57), Expect(3) = 2e-033
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -3 / +3
Query: 67 HVSSIVRGTVGYLDPEY 17
H+S+ V GT GY+ PEY
Sbjct: 435 HISTQVMGTFGYVAPEY 485
>gb|BI948363.1|BI948363 HVSMEl0009E03f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0009E03f, mRNA sequence
Length = 936
Score = 79.0 bits (166), Expect(3) = 3e-033
Identities = 34/74 (45%), Positives = 47/74 (63%)
Frame = -3 / +1
Query: 475 LADGREIAVKLLTNDSYQGIREFLNEVTLLSRIHHRHLVTFLGYSQQDGKNILVYEFMHN 296
L +G+ +AVK L + QG REFL EV +LS +HH +LV +GY + +LVYEFM
Sbjct: 295 LENGQAVAVKQLDRNGLQGNREFLVEVLMLSLLHHTNLVNLIGYCADGDQRLLVYEFMPL 474
Query: 295 GTLKEHLRGADNEK 254
G+L++HL EK
Sbjct: 475 GSLEDHLHDVPPEK 516
Score = 68.4 bits (143), Expect(3) = 3e-033
Identities = 27/53 (50%), Positives = 38/53 (71%)
Frame = -3 / +1
Query: 244 WLKRLEIAEDSAKGIEYLHTGCSPTIIHRDLKSSNILLDKNMRAKVADFGLSK 86
W R++IA +AKG+E+LH SP +I+RD KSSNILL + K++D GL+K
Sbjct: 529 WNTRMKIAAGAAKGLEHLHDKASPXVIYRDFKSSNILLGERFHPKLSDCGLAK 687
Score = 32.7 bits (65), Expect(3) = 3e-033
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = -3 / +1
Query: 85 PAVDGSHVSSIVRGTVGYLDPEY 17
P D +HVS+ V GT GY PEY
Sbjct: 694 PVGDKTHVSTRVMGTYGYCAPEY 762
>gb|AL504416.1|AL504416 AL504416 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW05D15V 5', mRNA sequence
Length = 699
Score = 141 bits (303), Expect = 4e-033
Identities = 59/129 (45%), Positives = 87/129 (67%)
Frame = -3 / +1
Query: 400 EVTLLSRIHHRHLVTFLGYSQQDGKNILVYEFMHNGTLKEHLRGADNEKITSWLKRLEIA 221
E+ LL RI H ++V+ +G+ + +VYE M NG+L+ L G + SW R++IA
Sbjct: 13 ELDLLQRIQHSNIVSLVGFCIHEENRFIVYELMVNGSLETQLHGPSHGSALSWHIRMKIA 192
Query: 220 EDSAKGIEYLHTGCSPTIIHRDLKSSNILLDKNMRAKVADFGLSKPAVDGSHVSSIVRGT 41
D+A+G+EYLH C+P IIHRDLKSSNILL+ + AK++DFGL+ + + S + + GT
Sbjct: 193 LDTARGLEYLHEHCNPPIIHRDLKSSNILLNSDFNAKISDFGLAVTSGNRSKGNLKLSGT 372
Query: 40 VGYLDPEYL 14
+GY+ PEYL
Sbjct: 373 LGYVAPEYL 399
>gb|BE558296.2|BE558296 HV_CEb0017B21f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0017B21f, mRNA sequence
Length = 800
Score = 133 bits (285), Expect(2) = 2e-031
Identities = 62/142 (43%), Positives = 86/142 (60%)
Frame = -3 / +3
Query: 460 EIAVKLLTNDSYQGIREFLNEVTLLSRIHHRHLVTFLGYSQQDGKNILVYEFMHNGTLKE 281
EIAVK L +DS QG EF NEV L++++ HR+LV +G Q + +LVYE++ N +L
Sbjct: 18 EIAVKRLDSDSDQGFIEFKNEVELIAKLQHRNLVRLMGCCSQGEEKVLVYEYLPNKSLDF 197
Query: 280 HLRGADNEKITSWLKRLEIAEDSAKGIEYLHTGCSPTIIHRDLKSSNILLDKNMRAKVAD 101
+ D + + W KRL I A+G+ YLH +IHRDLK SNILLD M AK++D
Sbjct: 198 FIFDEDRKVLLDWEKRLVIIVGIAEGLLYLHKHSRLRVIHRDLKPSNILLDSTMNAKISD 377
Query: 100 FGLSKPAVDGSHVSSIVRGTVG 35
FGL+K ++ + R VG
Sbjct: 378 FGLAKIFSSNNNEGNKTRKVVG 443
Score = 22.6 bits (43), Expect(2) = 2e-031
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -3 / +3
Query: 52 VRGTVGYLDPEY 17
V GT GY+ PEY
Sbjct: 435 VVGTYGYMAPEY 470
>gb|CA018896.1|CA018896 HV09P14r HV Hordeum vulgare subsp. vulgare cDNA clone HV09P14
5-PRIME, mRNA sequence
Length = 597
Score = 79.0 bits (166), Expect(3) = 5e-031
Identities = 32/62 (51%), Positives = 41/62 (66%)
Frame = -3 / +2
Query: 271 GADNEKITSWLKRLEIAEDSAKGIEYLHTGCSPTIIHRDLKSSNILLDKNMRAKVADFGL 92
G +K W RL IA +A+G+ YLH CSP IIHRD+KS NILLDK+ + DFG+
Sbjct: 332 GPSKKKKLDWETRLRIALGAAQGLAYLHHDCSPRIIHRDVKSKNILLDKDYEPHLTDFGI 511
Query: 91 SK 86
+K
Sbjct: 512 AK 517
Score = 57.9 bits (120), Expect(3) = 5e-031
Identities = 27/74 (36%), Positives = 42/74 (56%)
Frame = -3 / +2
Query: 475 LADGREIAVKLLTNDSYQGIREFLNEVTLLSRIHHRHLVTFLGYSQQDGKNILVYEFMHN 296
L + R +A+K L Q ++EF E+ + I HR+LV+ GYS N+L YE+M N
Sbjct: 125 LKNCRPVAIKKLYAQYPQSLKEFQTELETVGSIKHRNLVSLQGYSLSPVGNLLFYEYMEN 304
Query: 295 GTLKEHLRGADNEK 254
G+L + L ++K
Sbjct: 305 GSLWDVLHEGPSKK 346
Score = 35.9 bits (72), Expect(3) = 5e-031
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = -3 / +2
Query: 79 VDGSHVSSIVRGTVGYLDPEY 17
V +H S+ V GT+GY+DPEY
Sbjct: 527 VSKTHTSTYVMGTIGYIDPEY 589
>gb|BQ765210.1|BQ765210 EBro03_SQ006_D18_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ006_D18 5', mRNA sequence
Length = 628
Score = 130 bits (278), Expect(2) = 7e-031
Identities = 59/130 (45%), Positives = 84/130 (64%)
Frame = -3 / +1
Query: 475 LADGREIAVKLLTNDSYQGIREFLNEVTLLSRIHHRHLVTFLGYSQQDGKNILVYEFMHN 296
L DG+EIAVK L+ S QG+ E NEV L++++ H++LV LG Q+ + +LVYEF+ N
Sbjct: 7 LHDGQEIAVKRLSKTSQQGLVEMRNEVVLVAKLQHKNLVRLLGCCIQEEEMLLVYEFLPN 186
Query: 295 GTLKEHLRGADNEKITSWLKRLEIAEDSAKGIEYLHTGCSPTIIHRDLKSSNILLDKNMR 116
+L + L + +W R I + +G+ YLH TIIHRDLK+SNILLD +M
Sbjct: 187 RSLDKILFDPARRQELTWGHRFRIIQGIGRGLLYLHEDSRLTIIHRDLKASNILLDPDMN 366
Query: 115 AKVADFGLSK 86
K++DFGL+K
Sbjct: 367 PKISDFGLAK 396
Score = 24.0 bits (46), Expect(2) = 7e-031
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -3 / +1
Query: 61 SSIVRGTVGYLDPEY 17
+S + GT GY+ PEY
Sbjct: 427 TSHIAGTYGYMAPEY 471
>gb|BE196273.3|BE196273 HVSMEh0091N12f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0091N12f, mRNA sequence
Length = 951
Score = 71.2 bits (149), Expect(3) = 2e-030
Identities = 25/56 (44%), Positives = 38/56 (67%)
Frame = -3 / +2
Query: 253 ITSWLKRLEIAEDSAKGIEYLHTGCSPTIIHRDLKSSNILLDKNMRAKVADFGLSK 86
+ +W R+++ +AK + YLH P ++HRD+KSSNIL+D KV+DFGL+K
Sbjct: 302 VFTWDNRMKVVIGTAKALAYLHEAIEPKVVHRDIKSSNILIDDEFNGKVSDFGLAK 469
Score = 68.4 bits (143), Expect(3) = 2e-030
Identities = 28/70 (40%), Positives = 44/70 (62%)
Frame = -3 / +2
Query: 475 LADGREIAVKLLTNDSYQGIREFLNEVTLLSRIHHRHLVTFLGYSQQDGKNILVYEFMHN 296
L +G E+A+K + N+ Q +EF EV + + H++LV LGY + +LVYEF++N
Sbjct: 77 LVNGTEVAIKKIFNNMGQAEKEFRVEVEAIGHVRHKNLVRLLGYCVEGVNRMLVYEFVNN 256
Query: 295 GTLKEHLRGA 266
G L++ L GA
Sbjct: 257 GNLEQWLHGA 286
Score = 31.3 bits (62), Expect(3) = 2e-030
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -3 / +2
Query: 76 DGSHVSSIVRGTVGYLDPEY 17
D SH+++ V GT GY+ PEY
Sbjct: 482 DKSHITTRVMGTFGYVAPEY 541
>emb|AJ630116.2| Hordeum vulgare subsp. vulgare mRNA for LysM receptor-like kinase,
clone Chromi1
Length = 2119
Score = 91.3 bits (193), Expect(4) = 2e-030
Identities = 35/54 (64%), Positives = 46/54 (85%)
Frame = -3 / +3
Query: 247 SWLKRLEIAEDSAKGIEYLHTGCSPTIIHRDLKSSNILLDKNMRAKVADFGLSK 86
SW++R++IA DSA+G+EY+H P IHRD+KS+NIL+DKN RAKVADFGL+K
Sbjct: 1293 SWVERVQIALDSARGLEYIHEHTVPVYIHRDIKSANILIDKNTRAKVADFGLTK 1454
Score = 35.9 bits (72), Expect(4) = 2e-030
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -3 / +3
Query: 319 LVYEFMHNGTLKEHLRGADNEKIT 248
LVYEF+ NG L +HLRG E ++
Sbjct: 1224 LVYEFIENGNLSQHLRGTGYEPLS 1295
Score = 34.5 bits (69), Expect(4) = 2e-030
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = -3 / +3
Query: 424 QGIREFLNEVTLLSRIHHRHLVTFLGY 344
Q +EFL E+ +L+ +HH +LV +GY
Sbjct: 1122 QATQEFLAELKVLTHVHHLNLVRLIGY 1202
Score = 26.3 bits (51), Expect(4) = 2e-030
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3 / +3
Query: 79 VDGSHVSSIVRGTVGYLDPEYL 14
V G+ + V GT GY+ PEY+
Sbjct: 1464 VGGASXQTRVVGTFGYMPPEYV 1529
>gb|BU998515.1|BU998515 HI11E21r HI Hordeum vulgare subsp. vulgare cDNA clone HI11E21
5-PRIME, mRNA sequence
Length = 671
Score = 74.8 bits (157), Expect(4) = 3e-030
Identities = 32/64 (50%), Positives = 43/64 (67%)
Frame = -3 / +1
Query: 466 GREIAVKLLTNDSYQGIREFLNEVTLLSRIHHRHLVTFLGYSQQDGKNILVYEFMHNGTL 287
G IAVK L +SYQG RE+L EV L ++ H +LV +GY +D + +LVYEFM G+L
Sbjct: 181 GMVIAVKKLNQESYQGHREWLAEVNYLGQLSHPNLVKLVGYCVEDEQRLLVYEFMPRGSL 360
Query: 286 KEHL 275
+ HL
Sbjct: 361 ENHL 372
Score = 47.3 bits (97), Expect(4) = 3e-030
Identities = 19/33 (57%), Positives = 25/33 (75%)
Frame = -3 / +1
Query: 169 IIHRDLKSSNILLDKNMRAKVADFGLSKPAVDG 71
+I+RD K+SNILLD N AK++DFGL+K G
Sbjct: 478 VIYRDFKTSNILLDANYDAKLSDFGLAKDGPTG 576
Score = 35.9 bits (72), Expect(4) = 3e-030
Identities = 15/24 (62%), Positives = 16/24 (66%)
Frame = -3 / +1
Query: 85 PAVDGSHVSSIVRGTVGYLDPEYL 14
P D SHVS+ V GT GY PEYL
Sbjct: 568 PTGDKSHVSTRVMGTYGYAAPEYL 639
Score = 29.5 bits (58), Expect(4) = 3e-030
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = -3 / +1
Query: 247 SWLKRLEIAEDSAKGIEYLHT 185
SW R++IA +AKG+ +LH+
Sbjct: 403 SWNLRMKIAHGAAKGLAFLHS 465
>gb|BE060551.2|BE060551 HVSMEg0012J19f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0012J19f, mRNA sequence
Length = 687
Score = 77.1 bits (162), Expect(3) = 3e-030
Identities = 32/65 (49%), Positives = 41/65 (63%)
Frame = -3 / +3
Query: 271 GADNEKITSWLKRLEIAEDSAKGIEYLHTGCSPTIIHRDLKSSNILLDKNMRAKVADFGL 92
G +K W RL IA +A+G+ YLH CSP IIHRD+KS NILLDK+ + DFG+
Sbjct: 399 GPSKKKKLDWETRLRIALGAAQGLAYLHHDCSPRIIHRDVKSKNILLDKDYEPHLTDFGI 578
Query: 91 SKPAV 77
+ V
Sbjct: 579 VRVCV 593
Score = 57.9 bits (120), Expect(3) = 3e-030
Identities = 27/74 (36%), Positives = 42/74 (56%)
Frame = -3 / +3
Query: 475 LADGREIAVKLLTNDSYQGIREFLNEVTLLSRIHHRHLVTFLGYSQQDGKNILVYEFMHN 296
L + R +A+K L Q ++EF E+ + I HR+LV+ GYS N+L YE+M N
Sbjct: 192 LKNCRPVAIKKLYAQYPQSLKEFQTELETVGSIKHRNLVSLQGYSLSPVGNLLFYEYMEN 371
Query: 295 GTLKEHLRGADNEK 254
G+L + L ++K
Sbjct: 372 GSLWDVLHEGPSKK 413
Score = 35.0 bits (70), Expect(3) = 3e-030
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = -3 / +1
Query: 70 SHVSSIVRGTVGYLDPEY 17
+H S+ V GT+GY+DPEY
Sbjct: 601 THTSTYVMGTIGYIDPEY 654
>gb|BQ765808.1|BQ765808 EBro03_SQ008_A09_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ008_A09 5', mRNA sequence
Length = 588
Score = 77.6 bits (163), Expect(3) = 4e-030
Identities = 32/54 (59%), Positives = 42/54 (77%)
Frame = -3 / +2
Query: 250 TSWLKRLEIAEDSAKGIEYLHTGCSPTIIHRDLKSSNILLDKNMRAKVADFGLS 89
+SW R++I D+++GIEYLH+ P IIHRD+KSSNILLD A+V+DFGLS
Sbjct: 200 SSWKLRIKILLDASRGIEYLHSYAVPPIIHRDIKSSNILLDGGWVARVSDFGLS 361
Score = 61.6 bits (128), Expect(3) = 4e-030
Identities = 22/45 (48%), Positives = 32/45 (71%)
Frame = -3 / +2
Query: 409 FLNEVTLLSRIHHRHLVTFLGYSQQDGKNILVYEFMHNGTLKEHL 275
F +E+ LSR+HH+HLV +GY + + +LVYE+M NG L +HL
Sbjct: 11 FRSELAFLSRLHHKHLVGLVGYCDEKEERLLVYEYMKNGALYDHL 145
Score = 30.4 bits (60), Expect(3) = 4e-030
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -3 / +2
Query: 67 HVSSIVRGTVGYLDPEY 17
H+S GT+GY+DPEY
Sbjct: 407 HLSMKAAGTMGYMDPEY 457
>gb|BQ763863.1|BQ763863 EBro03_SQ005_I18_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ005_I18 5', mRNA sequence
Length = 614
Score = 80.3 bits (169), Expect(3) = 5e-030
Identities = 29/61 (47%), Positives = 45/61 (73%)
Frame = -3 / +1
Query: 247 SWLKRLEIAEDSAKGIEYLHTGCSPTIIHRDLKSSNILLDKNMRAKVADFGLSKPAVDGS 68
+W R +IA +A+G+ +LH C P IIHRD+KSSN+L+D+N+ A+V+DFG+++ G
Sbjct: 256 NWAARRKIAIGAARGLAFLHHNCIPHIIHRDMKSSNVLVDENLEARVSDFGMARMMXCGG 435
Query: 67 H 65
H
Sbjct: 436 H 438
Score = 65.7 bits (137), Expect(3) = 5e-030
Identities = 29/67 (43%), Positives = 44/67 (65%)
Frame = -3 / +1
Query: 475 LADGREIAVKLLTNDSYQGIREFLNEVTLLSRIHHRHLVTFLGYSQQDGKNILVYEFMHN 296
L DGR +A+K L + S QG REF E+ + +I HR+LV LGY + + +L+Y+FM
Sbjct: 25 LKDGRVVAIKKLIHVSGQGDREFTAEMETIGKIKHRNLVPLLGYCKIGEERLLMYDFMKY 204
Query: 295 GTLKEHL 275
G+L++ L
Sbjct: 205 GSLEDVL 225
Score = 23.1 bits (44), Expect(3) = 5e-030
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -3 / +2
Query: 58 SIVRGTVGYLDPEY 17
S + GT GY+ PEY
Sbjct: 452 STLAGTPGYVPPEY 493
>gb|BG415111.1|BG415111 HVSMEk0005D06f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0005D06f, mRNA sequence
Length = 641
Score = 81.7 bits (172), Expect(4) = 6e-030
Identities = 33/70 (47%), Positives = 45/70 (64%)
Frame = -3 / +2
Query: 460 EIAVKLLTNDSYQGIREFLNEVTLLSRIHHRHLVTFLGYSQQDGKNILVYEFMHNGTLKE 281
++AVK S QG+ EF E+ LLSR+ HRHLV+ +G + ILVYE+M NGT+K
Sbjct: 2 KVAVKRGNPKSQQGLNEFRTEIELLSRLRHRHLVSLIGSCDEGNDMILVYEYMENGTVKT 181
Query: 280 HLRGADNEKI 251
H G+DN +
Sbjct: 182 HFYGSDNPSL 211
Score = 45.1 bits (92), Expect(4) = 6e-030
Identities = 18/38 (47%), Positives = 24/38 (63%)
Frame = -3 / +2
Query: 247 SWLKRLEIAEDSAKGIEYLHTGCSPTIIHRDLKSSNIL 134
+W +RL+I G+ YLHTG + IIHRD+ S N L
Sbjct: 212 NWKQRLKICFAPPGGLHYLHTGSAEAIIHRDVNSDNHL 325
Score = 32.2 bits (64), Expect(4) = 6e-030
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = -3 / +3
Query: 145 SNILLDKNMRAKVADFGLSK 86
+ ILLDKN+ KVADFG K
Sbjct: 315 TTILLDKNLLPKVADFGAEK 374
Score = 27.2 bits (53), Expect(4) = 6e-030
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3 / +1
Query: 85 PAVDGSHVSSIVRGTVGYLDPEY 17
P ++ VS +GT+G LDPEY
Sbjct: 382 PELNQPLVSPAEKGTLGSLDPEY 450
>gb|BE214948.1|BE214948 HV_CEb0005F01f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0005F01f, mRNA sequence
Length = 938
Score = 126 bits (269), Expect(2) = 8e-030
Identities = 52/130 (40%), Positives = 81/130 (62%)
Frame = -3 / +3
Query: 475 LADGREIAVKLLTNDSYQGIREFLNEVTLLSRIHHRHLVTFLGYSQQDGKNILVYEFMHN 296
L G EIAVK ++ S QG+ E NE+ L++++ H++LV +G + + +L+YEF+ N
Sbjct: 57 LLSGDEIAVKRMSKTSTQGVEELKNELALVAKLKHKNLVRLVGVCLEQQERLLIYEFVPN 236
Query: 295 GTLKEHLRGADNEKITSWLKRLEIAEDSAKGIEYLHTGCSPTIIHRDLKSSNILLDKNMR 116
+L L + + W R +I A+GI+YLH ++HRDLK+SN+LLD NM
Sbjct: 237 RSLDLILFDEEKRRQLDWETRFKIINGVARGIQYLHEDSQLKVVHRDLKASNVLLDMNMN 416
Query: 115 AKVADFGLSK 86
K++DFGL+K
Sbjct: 417 PKISDFGLAK 446
Score = 24.4 bits (47), Expect(2) = 8e-030
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -3 / +3
Query: 64 VSSIVRGTVGYLDPEYL 14
V++ V GT GY+ PEY+
Sbjct: 474 VTNRVIGTYGYMAPEYV 524
>gb|BU970982.1|BU970982 HB16E06r BC Hordeum vulgare subsp. vulgare cDNA clone HB16E06
5-PRIME, mRNA sequence
Length = 470
Score = 130 bits (279), Expect = 9e-030
Identities = 52/104 (50%), Positives = 72/104 (69%)
Frame = -3 / +1
Query: 400 EVTLLSRIHHRHLVTFLGYSQQDGKNILVYEFMHNGTLKEHLRGADNEKITSWLKRLEIA 221
E+ LL RI H ++V+ LG+ G + +VYE M G+L+ L G + SW R++IA
Sbjct: 19 ELDLLGRIRHPNIVSLLGFCVHGGNHYIVYELMEKGSLETQLHGPSHGSAMSWHVRMKIA 198
Query: 220 EDSAKGIEYLHTGCSPTIIHRDLKSSNILLDKNMRAKVADFGLS 89
D+A+G+EYLH C+P +IHRDLKSSNILLD + AK+ADFGL+
Sbjct: 199 LDTARGLEYLHEHCNPPVIHRDLKSSNILLDSDFNAKIADFGLA 330
>gb|CD663430.1|CD663430 UCRHV18_05bh04_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_05bh04, mRNA sequence
Length = 840
Score = 130 bits (278), Expect = 1e-029
Identities = 53/130 (40%), Positives = 85/130 (65%)
Frame = -3 / -2
Query: 475 LADGREIAVKLLTNDSYQGIREFLNEVTLLSRIHHRHLVTFLGYSQQDGKNILVYEFMHN 296
L G+E AVK L+ S QG EF NEV L++++ H++LV LG + + +L+YE++ N
Sbjct: 554 LEGGKEAAVKRLSKGSSQGTMEFKNEVVLIAKLQHKNLVRLLGCCIHEDEKLLIYEYLPN 375
Query: 295 GTLKEHLRGADNEKITSWLKRLEIAEDSAKGIEYLHTGCSPTIIHRDLKSSNILLDKNMR 116
+L ++ + + +WL R +I + A+G+ YLH TI+HRDLK+SNILLD +M
Sbjct: 374 KSLDTYIFDGARKHLLNWLARFKIIKGIARGLLYLHQDSRLTIVHRDLKASNILLDADMT 195
Query: 115 AKVADFGLSK 86
K++DFG+++
Sbjct: 194 PKISDFGMAR 165
>gb|BF624846.2|BF624846 HVSMEa0017O11f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0017O11f, mRNA sequence
Length = 761
Score = 76.7 bits (161), Expect(2) = 2e-029
Identities = 30/71 (42%), Positives = 48/71 (67%)
Frame = -3 / +1
Query: 460 EIAVKLLTNDSYQGIREFLNEVTLLSRIHHRHLVTFLGYSQQDGKNILVYEFMHNGTLKE 281
++A+K S QGI EF E+ +LS++ HRHLV+ +GY ++ + ILVY++M +GTL+E
Sbjct: 196 KVAIKRGNPLSEQGIHEFQTEIEMLSKLRHRHLVSLIGYCEEKNEMILVYDYMAHGTLRE 375
Query: 280 HLRGADNEKIT 248
HL N ++
Sbjct: 376 HLFKTQNAPLS 408
Score = 73.0 bits (153), Expect(2) = 2e-029
Identities = 31/62 (50%), Positives = 41/62 (66%)
Frame = -3 / +1
Query: 247 SWLKRLEIAEDSAKGIEYLHTGCSPTIIHRDLKSSNILLDKNMRAKVADFGLSKPAVDGS 68
SW +RLEI +A+ + YLHTG TIIHRD+K++NILLD+ AK + GLSK
Sbjct: 406 SWRQRLEICIGAARRLHYLHTGAKHTIIHRDVKTTNILLDEKWVAKA*NLGLSKTGSSLD 585
Query: 67 HV 62
H+
Sbjct: 586 HI 591
>gb|BJ463669.1|BJ463669 BJ463669 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags32p24 5', mRNA sequence
Length = 657
Score = 128 bits (275), Expect = 3e-029
Identities = 60/145 (41%), Positives = 83/145 (57%)
Frame = -3 / +3
Query: 469 DGREIAVKLLTNDSYQGIREFLNEVTLLSRIHHRHLVTFLGYSQQDGKNILVYEFMHNGT 290
+G EIAVK L + S QG EF NE+ L++++ H +LV LG Q+ + ILVYE++ N +
Sbjct: 48 EGLEIAVKRLASHSGQGFIEFQNELQLVAKLQHLNLVRLLGCCSQEEEKILVYEYLPNKS 227
Query: 289 LKEHLRGADNEKITSWLKRLEIAEDSAKGIEYLHTGCSPTIIHRDLKSSNILLDKNMRAK 110
L + D + W K + I E A G+ YLH +IHRDLK SNILLD M K
Sbjct: 228 LDYFIFDEDKRSLLDWSKLVAIIEGIAHGLLYLHKHSRLLVIHRDLKPSNILLDSEMNPK 407
Query: 109 VADFGLSKPAVDGSHVSSIVRGTVG 35
++DFGL+K +I R +G
Sbjct: 408 ISDFGLAKIFNSNDTEGNITRRVIG 482
>dbj|AB109213.1| Hordeum vulgare BRI1 gene for putative brassinosteroid-insensitive 1,
complete cds, cultivar:Haruna Nijo
Length = 3558
Score = 77.1 bits (162), Expect(3) = 5e-029
Identities = 27/54 (50%), Positives = 43/54 (79%)
Frame = -3 / +1
Query: 247 SWLKRLEIAEDSAKGIEYLHTGCSPTIIHRDLKSSNILLDKNMRAKVADFGLSK 86
+W R +IA +A+G+ +LH C P IIHRD+KSSN+L+D+N+ A+V+DFG+++
Sbjct: 2740 NWAARRKIAIGAARGLAFLHHNCIPHIIHRDMKSSNVLVDENLEARVSDFGMAR 2901
Score = 65.7 bits (137), Expect(3) = 5e-029
Identities = 29/67 (43%), Positives = 44/67 (65%)
Frame = -3 / +1
Query: 475 LADGREIAVKLLTNDSYQGIREFLNEVTLLSRIHHRHLVTFLGYSQQDGKNILVYEFMHN 296
L DGR +A+K L + S QG REF E+ + +I HR+LV LGY + + +L+Y+FM
Sbjct: 2509 LKDGRVVAIKKLIHVSGQGDREFTAEMETIGKIKHRNLVPLLGYCKIGEERLLMYDFMKY 2688
Query: 295 GTLKEHL 275
G+L++ L
Sbjct: 2689 GSLEDVL 2709
Score = 23.1 bits (44), Expect(3) = 5e-029
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -3 / +1
Query: 58 SIVRGTVGYLDPEY 17
S + GT GY+ PEY
Sbjct: 2935 STLAGTPGYVPPEY 2976
>gb|AL504994.1|AL504994 AL504994 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW07A22V 5', mRNA sequence
Length = 700
Score = 71.6 bits (150), Expect(3) = 5e-029
Identities = 27/54 (50%), Positives = 41/54 (75%)
Frame = -3 / +1
Query: 247 SWLKRLEIAEDSAKGIEYLHTGCSPTIIHRDLKSSNILLDKNMRAKVADFGLSK 86
+W R++IA A+G+ +LH P IIHRD+K+SNILLDK++ K++DFGL++
Sbjct: 211 NWRARVKIAVGVARGLAFLHEEIRPHIIHRDIKASNILLDKDLTPKISDFGLAR 372
Score = 61.6 bits (128), Expect(3) = 5e-029
Identities = 27/68 (39%), Positives = 40/68 (58%)
Frame = -3 / +1
Query: 454 AVKLLTNDSYQGIREFLNEVTLLSRIHHRHLVTFLGYSQQDGKNILVYEFMHNGTLKEHL 275
A K+L+ S QG+REFL E+T +S I H +LVT +G + ILVY ++ +L + L
Sbjct: 1 AXKVLSATSRQGVREFLTELTAISDIKHENLVTLVGCCAEGSHRILVYNYLEKNSLSQTL 180
Query: 274 RGADNEKI 251
G+ I
Sbjct: 181 LGSGYSSI 204
Score = 32.7 bits (65), Expect(3) = 5e-029
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = -3 / +1
Query: 76 DGSHVSSIVRGTVGYLDPEY 17
+ +HVS+ V GT+GYL PEY
Sbjct: 385 NATHVSTRVAGTLGYLAPEY 444
>gb|BG414636.2|BG414636 HVSMEk0003C21f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0003C21f, mRNA sequence
Length = 868
Score = 70.7 bits (148), Expect(3) = 6e-029
Identities = 25/56 (44%), Positives = 39/56 (69%)
Frame = -3 / +1
Query: 253 ITSWLKRLEIAEDSAKGIEYLHTGCSPTIIHRDLKSSNILLDKNMRAKVADFGLSK 86
+ +W R++I AK + YLH P ++HRD+KSSNIL+D++ K++DFGL+K
Sbjct: 226 VLTWEARMKIVLGIAKALAYLHEAIEPKVVHRDIKSSNILIDEDFNGKLSDFGLAK 393
Score = 65.2 bits (136), Expect(3) = 6e-029
Identities = 26/70 (37%), Positives = 44/70 (62%)
Frame = -3 / +1
Query: 475 LADGREIAVKLLTNDSYQGIREFLNEVTLLSRIHHRHLVTFLGYSQQDGKNILVYEFMHN 296
L +G ++A+K L N+ Q +EF EV + + H++LV LGY + +LVYE+++N
Sbjct: 1 LINGTDVAIKKLLNNMGQAEKEFXVEVEAIGHVRHKNLVRLLGYCVEGIHRMLVYEYVNN 180
Query: 295 GTLKEHLRGA 266
G L++ + GA
Sbjct: 181 GNLEQWIHGA 210
Score = 29.5 bits (58), Expect(3) = 6e-029
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -3 / +1
Query: 70 SHVSSIVRGTVGYLDPEY 17
SH+++ V GT GY+ PEY
Sbjct: 412 SHITTRVMGTFGYVAPEY 465
>gb|CA029588.1|CA029588 HZ65K08r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ65K08
5-PRIME, mRNA sequence
Length = 610
Score = 70.7 bits (148), Expect(3) = 9e-029
Identities = 25/56 (44%), Positives = 39/56 (69%)
Frame = -3 / +1
Query: 253 ITSWLKRLEIAEDSAKGIEYLHTGCSPTIIHRDLKSSNILLDKNMRAKVADFGLSK 86
+ +W R++I AK + YLH P ++HRD+KSSNIL+D++ K++DFGL+K
Sbjct: 283 VLTWEARMKIVLGIAKALAYLHEAIEPKVVHRDIKSSNILIDEDFNGKLSDFGLAK 450
Score = 64.8 bits (135), Expect(3) = 9e-029
Identities = 26/70 (37%), Positives = 44/70 (62%)
Frame = -3 / +1
Query: 475 LADGREIAVKLLTNDSYQGIREFLNEVTLLSRIHHRHLVTFLGYSQQDGKNILVYEFMHN 296
L +G ++A+K L N+ Q +EF EV + + H++LV LGY + +LVYE+++N
Sbjct: 58 LINGTDVAIKKLLNNMGQAEKEFRVEVEAIGHVRHKNLVRLLGYCVEGIHRMLVYEYVNN 237
Query: 295 GTLKEHLRGA 266
G L++ + GA
Sbjct: 238 GNLEQWIHGA 267
Score = 29.5 bits (58), Expect(3) = 9e-029
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -3 / +1
Query: 70 SHVSSIVRGTVGYLDPEY 17
SH+++ V GT GY+ PEY
Sbjct: 469 SHITTRVMGTFGYVAPEY 522
>gb|BE558923.1|BE558923 HV_CEb0020M17f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0020M17f, mRNA sequence
Length = 821
Score = 115 bits (245), Expect(2) = 1e-028
Identities = 51/126 (40%), Positives = 77/126 (61%)
Frame = -3 / +3
Query: 448 KLLTNDSYQGIREFLNEVTLLSRIHHRHLVTFLGYSQQDGKNILVYEFMHNGTLKEHLRG 269
K L++ S QG REF+NE+ ++S + H +LV G + + +LVYE+M N L L
Sbjct: 24 KQLSSKSKQGNREFVNEIGMISALQHPNLVRLYGCCTEGNQLLLVYEYMENNCLARALFV 203
Query: 268 ADNEKITSWLKRLEIAEDSAKGIEYLHTGCSPTIIHRDLKSSNILLDKNMRAKVADFGLS 89
+ W R +I A+G+ Y+H + I+HRD+K+SNILLDK++ AK++DFGL+
Sbjct: 204 EEYRLALDWPTRRKICLGIARGLAYMHEESAIRIVHRDIKASNILLDKDLDAKISDFGLA 383
Query: 88 KPAVDG 71
K DG
Sbjct: 384 KLNEDG 401
Score = 31.8 bits (63), Expect(2) = 1e-028
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = -3 / +3
Query: 70 SHVSSIVRGTVGYLDPEY 17
+H+S+ V GT+GY+ PEY
Sbjct: 405 THISTKVAGTIGYMAPEY 458
>gb|CB878333.1|CB878333 HP08C14T HP Hordeum vulgare subsp. vulgare cDNA clone HP08C14
5-PRIME, mRNA sequence
Length = 649
Score = 121 bits (258), Expect(2) = 1e-028
Identities = 49/122 (40%), Positives = 79/122 (64%)
Frame = -3 / +3
Query: 451 VKLLTNDSYQGIREFLNEVTLLSRIHHRHLVTFLGYSQQDGKNILVYEFMHNGTLKEHLR 272
VK L+ S QG++E NE+ L++++ H++LV +G + + +LVYEF+ N +L + L
Sbjct: 12 VKRLSKSSTQGVKELKNELALVAKLKHKNLVRLVGVCLEHEERLLVYEFVPNRSLDKILF 191
Query: 271 GADNEKITSWLKRLEIAEDSAKGIEYLHTGCSPTIIHRDLKSSNILLDKNMRAKVADFGL 92
+ + W KR +I A+G++YLH ++HRDLK+SNILLD NM K++DFGL
Sbjct: 192 DTEKREQLDWGKRYKIINGIARGLQYLHEDSQLKVVHRDLKASNILLDTNMNPKISDFGL 371
Query: 91 SK 86
++
Sbjct: 372 AR 377
Score = 25.8 bits (50), Expect(2) = 1e-028
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -3 / +3
Query: 64 VSSIVRGTVGYLDPEYL 14
V+S V GT GY+ PEY+
Sbjct: 405 VTSRVVGTYGYMAPEYV 455
>gb|AF085167.1|AF085167 Hordeum vulgare receptor-like kinase ARK1AS gene, partial cds
Length = 2849
Score = 75.8 bits (159), Expect(3) = 1e-028
Identities = 34/58 (58%), Positives = 38/58 (65%)
Frame = -3 / +2
Query: 259 EKITSWLKRLEIAEDSAKGIEYLHTGCSPTIIHRDLKSSNILLDKNMRAKVADFGLSK 86
EK SW K EIA A+GI YLH GC I+H D+K NILLD N KVADFGL+K
Sbjct: 2231 EKSFSWDKLNEIALGVARGINYLHQGCDMQILHFDIKPHNILLDSNFVPKVADFGLAK 2404
Score = 62.9 bits (131), Expect(3) = 1e-028
Identities = 25/71 (35%), Positives = 46/71 (64%)
Frame = -3 / +2
Query: 475 LADGREIAVKLLTNDSYQGIREFLNEVTLLSRIHHRHLVTFLGYSQQDGKNILVYEFMHN 296
L G +AVK+L +S +F++EV+ + RIHH ++V +G+ ++ + LVYE+M N
Sbjct: 2021 LPGGVHVAVKMLEGNSNCNGEDFISEVSTIGRIHHVNIVRLVGFCSEEMRMALVYEYMPN 2200
Query: 295 GTLKEHLRGAD 263
G+L +++ A+
Sbjct: 2201 GSLDKYIFSAE 2233
Score = 25.8 bits (50), Expect(3) = 1e-028
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -3 / +2
Query: 58 SIVRGTVGYLDPEYL 14
S +RGTVGY+ PE +
Sbjct: 2438 SAMRGTVGYIAPEMI 2482
>gb|BF263242.2|BF263242 HV_CEa0006D16f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0006D16f, mRNA sequence
Length = 910
Score = 69.8 bits (146), Expect(4) = 3e-028
Identities = 30/61 (49%), Positives = 39/61 (63%)
Frame = -3 / +2
Query: 457 IAVKLLTNDSYQGIREFLNEVTLLSRIHHRHLVTFLGYSQQDGKNILVYEFMHNGTLKEH 278
+AVK L +QG RE+L EV L + H+HL+ LGY QD + +LVYEFM G+L H
Sbjct: 230 VAVKQLNIAGHQGHREWLAEVIFLGQFRHQHLLKLLGYCCQDEERLLVYEFMPRGSLDNH 409
Query: 277 L 275
L
Sbjct: 410 L 412
Score = 47.3 bits (97), Expect(4) = 3e-028
Identities = 19/38 (50%), Positives = 27/38 (71%)
Frame = -3 / +2
Query: 184 GCSPTIIHRDLKSSNILLDKNMRAKVADFGLSKPAVDG 71
G +I+RDLK+ NILLD + AK++DFGL+K +G
Sbjct: 497 GGKQPVIYRDLKAXNILLDSDYTAKLSDFGLAKMGPEG 610
Score = 33.6 bits (67), Expect(4) = 3e-028
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -3 / +2
Query: 244 WLKRLEIAEDSAKGIEYLHTGCSPTI 167
W RL++A +AKG+ +LH G P I
Sbjct: 440 WCTRLKVAIGAAKGVAFLHGGKQPVI 517
Score = 29.9 bits (59), Expect(4) = 3e-028
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3 / +2
Query: 85 PAVDGSHVSSIVRGTVGYLDPEYL 14
P + +HVS+ V GT GY PEY+
Sbjct: 602 PEGEETHVSTRVMGTHGYAAPEYV 673
>gb|BU998735.1|BU998735 HI12A05r HI Hordeum vulgare subsp. vulgare cDNA clone HI12A05
5-PRIME, mRNA sequence
Length = 629
Score = 83.1 bits (175), Expect(2) = 3e-028
Identities = 34/69 (49%), Positives = 49/69 (71%)
Frame = -3 / +1
Query: 460 EIAVKLLTNDSYQGIREFLNEVTLLSRIHHRHLVTFLGYSQQDGKNILVYEFMHNGTLKE 281
EIAVK + + S QG+REF+ EV + R+ HR+LV LGY ++ G+ +LVY++M NG+L +
Sbjct: 163 EIAVKKVAHGSRQGMREFVAEVVTIGRLRHRNLVQLLGYCRRKGELLLVYDYMPNGSLDK 342
Query: 280 HLRGADNEK 254
HL G EK
Sbjct: 343 HLYGDQKEK 369
Score = 62.5 bits (130), Expect(2) = 3e-028
Identities = 22/53 (41%), Positives = 35/53 (66%)
Frame = -3 / +1
Query: 244 WLKRLEIAEDSAKGIEYLHTGCSPTIIHRDLKSSNILLDKNMRAKVADFGLSK 86
W +R I + A G+ YLH ++HRD+K+SN+LLD +M ++ DFGL++
Sbjct: 382 WGQRFRIIKGVASGLLYLHEDWEQVVVHRDIKASNVLLDADMNGRLGDFGLAR 540
>gb|BQ462615.1|BQ462615 HI01H17T HI Hordeum vulgare subsp. vulgare cDNA clone HI01H17
5-PRIME, mRNA sequence
Length = 571
Score = 80.8 bits (170), Expect(3) = 3e-028
Identities = 32/53 (60%), Positives = 41/53 (77%)
Frame = -3 / +1
Query: 244 WLKRLEIAEDSAKGIEYLHTGCSPTIIHRDLKSSNILLDKNMRAKVADFGLSK 86
W R +IA ++AKG+ YLH CSP I+HRD+KS+NILLD + A VADFGL+K
Sbjct: 214 WATRYKIAVEAAKGLCYLHHDCSPPILHRDVKSNNILLDTDFEAHVADFGLAK 372
Score = 56.1 bits (116), Expect(3) = 3e-028
Identities = 23/47 (48%), Positives = 30/47 (63%)
Frame = -3 / +1
Query: 409 FLNEVTLLSRIHHRHLVTFLGYSQQDGKNILVYEFMHNGTLKEHLRG 269
F E+ L RI HRH+V LG++ N+LVYE+M NG+L E L G
Sbjct: 52 FSAEIQTLGRIRHRHIVRLLGFAANRETNLLVYEYMPNGSLGEVLHG 192
Score = 26.3 bits (51), Expect(3) = 3e-028
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -3 / +1
Query: 73 GSHVSSIVRGTVGYLDPEY 17
GS S + G+ GY+ PEY
Sbjct: 394 GSECMSAIAGSYGYIAPEY 450
>gb|CA025815.1|CA025815 HZ53D16r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ53D16
5-PRIME, mRNA sequence
Length = 569
Score = 125 bits (267), Expect = 4e-028
Identities = 56/130 (43%), Positives = 79/130 (60%)
Frame = -3 / +3
Query: 475 LADGREIAVKLLTNDSYQGIREFLNEVTLLSRIHHRHLVTFLGYSQQDGKNILVYEFMHN 296
L G EIAVK L+ S QG EF NEV L++++ HR+LV LG+ + + +LVYE++ N
Sbjct: 21 LTGGSEIAVKRLSARSRQGAAEFRNEVELIAKLQHRNLVRLLGWCAERDEKLLVYEYLPN 200
Query: 295 GTLKEHLRGADNEKITSWLKRLEIAEDSAKGIEYLHTGCSPTIIHRDLKSSNILLDKNMR 116
+L L A W R I A+G+ YLH ++HRDLK+SN+LLD MR
Sbjct: 201 RSLDAFLFDASKSAQLDWKTRHGIILGIARGLLYLHEDSLLKVVHRDLKASNVLLDNKMR 380
Query: 115 AKVADFGLSK 86
K++DFG++K
Sbjct: 381 PKISDFGMAK 410
>gb|AF085166.1|AF085166 Hordeum vulgare receptor-like kinase gene, partial cds
Length = 2559
Score = 75.8 bits (159), Expect(3) = 4e-028
Identities = 34/58 (58%), Positives = 38/58 (65%)
Frame = -3 / +3
Query: 259 EKITSWLKRLEIAEDSAKGIEYLHTGCSPTIIHRDLKSSNILLDKNMRAKVADFGLSK 86
EK SW K EIA A+GI YLH GC I+H D+K NILLD N KVADFGL+K
Sbjct: 1905 EKSFSWDKLNEIALGIARGINYLHQGCDMQILHFDIKPHNILLDSNFVPKVADFGLAK 2078
Score = 61.1 bits (127), Expect(3) = 4e-028
Identities = 24/71 (33%), Positives = 46/71 (64%)
Frame = -3 / +3
Query: 475 LADGREIAVKLLTNDSYQGIREFLNEVTLLSRIHHRHLVTFLGYSQQDGKNILVYEFMHN 296
L G +AVK+L +S +F++EV+ + RIHH ++V +G+ ++ + LVYE+M +
Sbjct: 1695 LPGGVHVAVKMLEGNSNCNGEDFISEVSTIGRIHHVNVVRLVGFCSEEMRRALVYEYMPH 1874
Query: 295 GTLKEHLRGAD 263
G+L +++ A+
Sbjct: 1875 GSLDKYIFSAE 1907
Score = 25.8 bits (50), Expect(3) = 4e-028
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -3 / +3
Query: 58 SIVRGTVGYLDPEYL 14
S +RGTVGY+ PE +
Sbjct: 2112 SAMRGTVGYIAPEMI 2156
>gb|BJ465430.1|BJ465430 BJ465430 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags39m17 5', mRNA sequence
Length = 691
Score = 87.2 bits (184), Expect(2) = 5e-028
Identities = 34/71 (47%), Positives = 53/71 (74%)
Frame = -3 / +2
Query: 286 KEHLRGADNEKITSWLKRLEIAEDSAKGIEYLHTGCSPTIIHRDLKSSNILLDKNMRAKV 107
++ ++GA +W++R++IA D+AKG+EYLH P+I+HRD++SSNILL ++ +AK+
Sbjct: 395 RKGVQGAQPGPPLNWMQRMKIAVDAAKGLEYLHEKVQPSIVHRDVRSSNILLFEDFKAKI 574
Query: 106 ADFGLSKPAVD 74
ADF LS A D
Sbjct: 575 ADFNLSNQAPD 607
Score = 57.4 bits (119), Expect(2) = 5e-028
Identities = 26/69 (37%), Positives = 40/69 (57%)
Frame = -3 / +2
Query: 475 LADGREIAVKLLTNDSYQGIREFLNEVTLLSRIHHRHLVTFLGYSQQDGKNILVYEFMHN 296
L +G ++AVK L + + I EF +V+L+SR+ H + V LGY + I+ YEF
Sbjct: 188 LDNGTKMAVKKLDSTENEPISEFSTQVSLVSRLKHENFVDILGYCMERNLRIVAYEFATM 367
Query: 295 GTLKEHLRG 269
G+L + L G
Sbjct: 368 GSLHDVLHG 394
>dbj|AB109215.1| Hordeum vulgare BRI1 gene for putative brassinosteroid-insensitive 1,
complete cds, cultivar:Akashinriki
Length = 3558
Score = 77.1 bits (162), Expect(3) = 5e-028
Identities = 27/54 (50%), Positives = 43/54 (79%)
Frame = -3 / +1
Query: 247 SWLKRLEIAEDSAKGIEYLHTGCSPTIIHRDLKSSNILLDKNMRAKVADFGLSK 86
+W R +IA +A+G+ +LH C P IIHRD+KSSN+L+D+N+ A+V+DFG+++
Sbjct: 2740 NWAARRKIAIGAARGLAFLHHNCIPHIIHRDMKSSNVLVDENLEARVSDFGMAR 2901
Score = 62.0 bits (129), Expect(3) = 5e-028
Identities = 28/67 (41%), Positives = 43/67 (64%)
Frame = -3 / +1
Query: 475 LADGREIAVKLLTNDSYQGIREFLNEVTLLSRIHHRHLVTFLGYSQQDGKNILVYEFMHN 296
L DGR +A+K L + S QG REF E+ + +I R+LV LGY + + +L+Y+FM
Sbjct: 2509 LKDGRVVAIKKLIHVSGQGDREFTAEMETIGKIKRRNLVPLLGYCKIGEERLLMYDFMKY 2688
Query: 295 GTLKEHL 275
G+L++ L
Sbjct: 2689 GSLEDVL 2709
Score = 23.1 bits (44), Expect(3) = 5e-028
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -3 / +1
Query: 58 SIVRGTVGYLDPEY 17
S + GT GY+ PEY
Sbjct: 2935 STLAGTPGYVPPEY 2976
>gb|AV836502.1|AV836502 AV836502 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare seedling leaves second leaf stage Hordeum
vulgare subsp. vulgare cDNA clone basd22d20, mRNA
sequence
Length = 455
Score = 80.3 bits (169), Expect(2) = 7e-028
Identities = 33/75 (44%), Positives = 49/75 (65%)
Frame = -3 / +2
Query: 475 LADGREIAVKLLTNDSYQGIREFLNEVTLLSRIHHRHLVTFLGYSQQDGKNILVYEFMHN 296
LA G+ +AVK S QG EF E+ LLSR+HH+++V+ +G+ G+ +LVYE++ N
Sbjct: 92 LATGQLVAVKRSQEGSLQGSLEFRTEIELLSRVHHKNVVSLVGFCLDQGEQMLVYEYIPN 271
Query: 295 GTLKEHLRGADNEKI 251
GTLKE L G ++
Sbjct: 272 GTLKESLTGKSGVRL 316
Score = 63.8 bits (133), Expect(2) = 7e-028
Identities = 24/45 (53%), Positives = 32/45 (71%)
Frame = -3 / +2
Query: 244 WLKRLEIAEDSAKGIEYLHTGCSPTIIHRDLKSSNILLDKNMRAK 110
W +RL + +AKGI YLH P I+HRD+KSSN+LLD+ + AK
Sbjct: 320 WKRRLRVILGTAKGIAYLHELADPPIVHRDIKSSNVLLDERLNAK 454
>gb|BI959898.1|BI959898 HVSMEn0022E20f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0022E20f, mRNA sequence
Length = 663
Score = 124 bits (265), Expect = 7e-028
Identities = 54/130 (41%), Positives = 80/130 (61%)
Frame = -3 / +2
Query: 475 LADGREIAVKLLTNDSYQGIREFLNEVTLLSRIHHRHLVTFLGYSQQDGKNILVYEFMHN 296
L G E+AVK L +S QG EF NEV L++++ HR+LV L +Q + ILVYE+M N
Sbjct: 233 LPGGEEVAVKRLCKNSGQGHEEFKNEVILIAKLQHRNLVRLLACCKQGEEKILVYEYMPN 412
Query: 295 GTLKEHLRGADNEKITSWLKRLEIAEDSAKGIEYLHTGCSPTIIHRDLKSSNILLDKNMR 116
+L + + + W R +I E A+G+ YLH I+HRDLK+SNILLD +M
Sbjct: 413 KSLDAFIFNPEKRGLLXWRTRFDIIEGIARGLLYLHRDSRLRIVHRDLKASNILLDTDMN 592
Query: 115 AKVADFGLSK 86
+++DF +++
Sbjct: 593 PQISDFRMAR 622
>gb|AV913572.1|AV913572 AV913572 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags22i21 5', mRNA sequence
Length = 634
Score = 81.3 bits (171), Expect(3) = 1e-027
Identities = 32/53 (60%), Positives = 40/53 (75%)
Frame = -3 / +1
Query: 244 WLKRLEIAEDSAKGIEYLHTGCSPTIIHRDLKSSNILLDKNMRAKVADFGLSK 86
W R+ I +AKG+ YLH CSP IIHRD+KSSNILLD N ++V+DFGL+K
Sbjct: 250 WEARINIILGAAKGLAYLHHDCSPRIIHRDIKSSNILLDGNFESRVSDFGLAK 408
Score = 44.6 bits (91), Expect(3) = 1e-027
Identities = 19/65 (29%), Positives = 33/65 (50%)
Frame = -3 / +1
Query: 469 DGREIAVKLLTNDSYQGIREFLNEVTLLSRIHHRHLVTFLGYSQQDGKNILVYEFMHNGT 290
DG A+K + + + F E+ +L + HR+LV GY +L+Y+++ G+
Sbjct: 31 DGSVFALKRIVKTNEGRDKFFDRELEILGSVKHRNLVNLRGYCNSPSSKLLIYDYLPGGS 210
Query: 289 LKEHL 275
L E L
Sbjct: 211 LDEVL 225
Score = 35.0 bits (70), Expect(3) = 1e-027
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = -3 / +1
Query: 70 SHVSSIVRGTVGYLDPEYL 14
SH+++IV GT GYL PEY+
Sbjct: 427 SHITTIVAGTFGYLAPEYM 483
>gb|AY943294.1| Hordeum vulgare subsp. vulgare clone BAC 673I14, complete sequence
Length = 108608
Score = 75.8 bits (159), Expect(3) = 2e-027
Identities = 31/69 (44%), Positives = 44/69 (63%)
Frame = -3 / +3
Query: 475 LADGREIAVKLLTNDSYQGIREFLNEVTLLSRIHHRHLVTFLGYSQQDGKNILVYEFMHN 296
L + +A+K L + QG REFL EV +LS +HH HLV +GY + +LVYE+M
Sbjct: 81273 LLPSQVVAIKQLDRNGLQGNREFLVEVLMLSLLHHPHLVNLIGYCADGDQRLLVYEYMPL 81452
Query: 295 GTLKEHLRG 269
G+L++HL G
Sbjct: 81453 GSLEDHLHG 81479
Score = 68.9 bits (144), Expect(3) = 2e-027
Identities = 27/53 (50%), Positives = 39/53 (73%)
Frame = -3 / +3
Query: 244 WLKRLEIAEDSAKGIEYLHTGCSPTIIHRDLKSSNILLDKNMRAKVADFGLSK 86
W R++IA +AKG+E+LH +P +I+RDLK SNILL + K++DFGL+K
Sbjct: 81606 WNTRMKIAAGAAKGLEHLHDKTNPPVIYRDLKCSNILLGEGYHPKLSDFGLAK 81764
Score = 32.7 bits (65), Expect(3) = 2e-027
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = -3 / +3
Query: 85 PAVDGSHVSSIVRGTVGYLDPEY 17
P D +HVS+ V GT GY PEY
Sbjct: 81771 PVGDKTHVSTRVMGTYGYCAPEY 81839
>gb|BM816134.1|BM816134 HC05B11_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC05B11_T3.ab1 similar to Arabidopsis thaliana wak4
gene; wall-associated kinase 4. (AJ009695) [Oryza
sativa],Similar to wak1 gene (AJ009696) [Oryza
sativa],putative wall-associated kinase 2 [Oryza
sativa],serine/threonine protein kinase [Oryza sativa
subsp. japonica], mRNA sequence
Length = 810
Score = 74.4 bits (156), Expect(3) = 3e-027
Identities = 31/49 (63%), Positives = 38/49 (77%)
Frame = -3 / -1
Query: 235 RLEIAEDSAKGIEYLHTGCSPTIIHRDLKSSNILLDKNMRAKVADFGLS 89
RL IA DSA+ + YLH+G S I+H D+KSSNILLD N +AKV+DFG S
Sbjct: 294 RLGIAHDSAEALSYLHSGASTPILHGDVKSSNILLDDNHKAKVSDFGAS 148
Score = 51.9 bits (107), Expect(3) = 3e-027
Identities = 26/71 (36%), Positives = 42/71 (59%)
Frame = -3 / -1
Query: 460 EIAVKLLTNDSYQGIREFLNEVTLLSRIHHRHLVTFLGYSQQDGKNILVYEFMHNGTLKE 281
E+AVK Q +EF E+ +L++I+HR++V LG + +LVYEF+ NGTL +
Sbjct: 516 EVAVKRCMTIDEQHKKEFGKEMLILAQINHRNVVKLLGCCLEVEVPMLVYEFVPNGTLFD 337
Query: 280 HLRGADNEKIT 248
+ G +I+
Sbjct: 336 LIHGNHGWRIS 304
Score = 33.6 bits (67), Expect(3) = 3e-027
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = -3 / -1
Query: 76 DGSHVSSIVRGTVGYLDPEYL 14
D S ++V+GT GYLDPEY+
Sbjct: 132 DESQFVTLVQGTCGYLDPEYM 70
>gb|BQ760957.1|BQ760957 EBro03_SQ003_P10_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ003_P10 5', mRNA sequence
Length = 592
Score = 68.4 bits (143), Expect(3) = 3e-027
Identities = 26/53 (49%), Positives = 36/53 (67%)
Frame = -3 / +1
Query: 244 WLKRLEIAEDSAKGIEYLHTGCSPTIIHRDLKSSNILLDKNMRAKVADFGLSK 86
W R EI A+G+ YLH ++HRD+K+SNILLD N+ K++DFGL+K
Sbjct: 211 WPTRFEICLSVARGLSYLHEESIIPVVHRDIKASNILLDANLNPKISDFGLAK 369
Score = 60.2 bits (125), Expect(3) = 3e-027
Identities = 25/58 (43%), Positives = 36/58 (62%)
Frame = -3 / +1
Query: 442 LTNDSYQGIREFLNEVTLLSRIHHRHLVTFLGYSQQDGKNILVYEFMHNGTLKEHLRG 269
L+ S+QG REF E+ +SR+ HR+LV G + K +LVYE++ NG+L L G
Sbjct: 16 LSEASHQGKREFATEIETISRVQHRNLVKLYGCCLEGNKPLLVYEYLENGSLDHALFG 189
Score = 31.3 bits (62), Expect(3) = 3e-027
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = -3 / +1
Query: 70 SHVSSIVRGTVGYLDPEY 17
+HVS+ V GT GYL PEY
Sbjct: 388 THVSTKVAGTFGYLAPEY 441
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 233,120,040
Number of Sequences: 312970
Number of extensions: 3216818
Number of successful extensions: 29213
Number of sequences better than 1.0e-020: 170
length of database: 58,378,179
effective HSP length: 51
effective length of database: 42,416,709
effective search space used: 7422924075
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)