TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCF4h05.yg.2.1
(697 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY177665.1| Hordeum vulgare subsp. vulgare putative call... 424 e-118
gb|AV923029.1|AV923029 AV923029 K. Sato unpublished cDNA li... 322 1e-087
gb|BJ462458.1|BJ462458 BJ462458 K. Sato unpublished cDNA li... 260 6e-069
gb|BU969103.1|BU969103 HB10J09r BC Hordeum vulgare subsp. v... 199 1e-050
gb|AV836635.1|AV836635 AV836635 K. Sato unpublished cDNA li... 182 1e-045
gb|AV934137.1|AV934137 AV934137 K. Sato unpublished cDNA li... 166 2e-040
gb|BJ470174.1|BJ470174 BJ470174 K. Sato unpublished cDNA li... 166 2e-040
gb|AV932586.1|AV932586 AV932586 K. Sato unpublished cDNA li... 75 4e-026
>gb|AY177665.1| Hordeum vulgare subsp. vulgare putative callose synthase mRNA,
complete cds
Length = 6180
Score = 424 bits (921), Expect = e-118
Identities = 184/225 (81%), Positives = 187/225 (83%)
Frame = -2 / +3
Query: 693 HXXXXEXXXXXXXXNPKXXXXXXXXXXHXIIFTXXNAXXTIDMNQDXXXEXALKMRNLLE 514
H E NPK H +IFT NA TIDMNQD E ALKMRNLLE
Sbjct: 3900 HGKDKEIYSVKLPGNPKLGEGKPENQNHAVIFTRGNAVQTIDMNQDNYFEEALKMRNLLE 4079
Query: 513 EFSLKRGKHYPSILGVREHVFTGSVSSLASFMSNQETSFVTLGQRVLANPLKVRMHYGHP 334
EFS GK PSILGVREHVFTGSVSSLASFMSNQETSFVTLGQRVL+NPLKVRMHYGHP
Sbjct: 4080 EFSQNHGKFKPSILGVREHVFTGSVSSLASFMSNQETSFVTLGQRVLSNPLKVRMHYGHP 4259
Query: 333 DVFDRIFHITRGGISKASRSINISEDIYAGFNSTLRQGCITHHEYIQVGKGRDVGLNQIA 154
DVFDRIFHITRGGISKASR INISEDI+AGFNSTLRQG ITHHEYIQVGKGRDVGLNQIA
Sbjct: 4260 DVFDRIFHITRGGISKASRIINISEDIFAGFNSTLRQGNITHHEYIQVGKGRDVGLNQIA 4439
Query: 153 LFEGKVAGGNGEQVLSRDIYRLGQLFDFFRMLSFYVTTVGFYFCT 19
LFEGKVAGGNGEQVLSRDIYRLGQLFDFFRMLSFYVTTVGFYFCT
Sbjct: 4440 LFEGKVAGGNGEQVLSRDIYRLGQLFDFFRMLSFYVTTVGFYFCT 4574
Score = 303 bits (655), Expect = 9e-082
Identities = 131/224 (58%), Positives = 158/224 (70%)
Frame = +1 / -2
Query: 22 TEVESNSCHVEG*HPEKVKKLSESIYVSAKNLFTISTSNFSFK*CNLIKSNIPTFANLNI 201
TEV+ NS H+EG*HPEKVKKL +S+Y+SAKNLF +S+ NFSFK*C+LIK NI +F NL+I
Sbjct: 4571 TEVKPNSSHIEG*HPEKVKKLPKSVYISAKNLFAVSSRNFSFK*CDLIKPNISSFTNLDI 4392
Query: 202 FMMSYASLTQS*VESCIYILTDIDAARGLTNSTPCYMKNSIKNIWMTIVHSHFQRVSKNT 381
M+SY LTQS ++ C YILTDID LT++TP MK SIK++W+TI+HSHFQ + KNT
Sbjct: 4391 LMVSYVPLTQSRIKPCKYILTDIDDTGRLTDATPRNMKYSIKHVWVTIMHSHFQWIRKNT 4212
Query: 382 LS*CHKTCLLIRHK*GQGGNTSREDMLPNTKNRRVMLATLQRELLKQVSHFKCLLXXXIL 561
LS*CHKT LI HK* +GGNTS EDM NTKN R+ LA + RE LKQ+SHF+CLL +L
Sbjct: 4211 LS*CHKTSFLI*HK*SKGGNTSGEDMFSNTKN*RLELAMILREFLKQISHFECLLEIVVL 4032
Query: 562 IHINSXXCIXXSKYYXMXXXXXXXXXXLWIXXXXXXXXFLXXXM 693
IHIN I S+YY M LWI FL M
Sbjct: 4031 IHINGLYSISASEYYSMVLIFGFTLPKLWIARQFNRINFLVLSM 3900
Score = 259 bits (560), Expect = 1e-068
Identities = 120/195 (61%), Positives = 133/195 (68%)
Frame = -1 / +2
Query: 604 NIYSXXCXXXY*YESGXLXXXGT*NEKPA*GVLSEAWQALPFYSWC*GACLHGKCFLPGL 425
NI+S C +*YESG L GT N K A*G+LS++WQ F SWC* CLH KCFLP
Sbjct: 3989 NIHSRKCCTNH*YESGQLFRGGTQNAKSA*GILSKSWQVQAFNSWC*RTCLHRKCFLPCF 4168
Query: 424 IYV*SGDKFCDIRTACSC*PAESENALWSSRCF**NFSYNKGWN**GLSQHQYQ*GYICR 245
IYV SG+ FCDIRTACS * ESENALWS R **N SY +GW+ *G+ HQYQ*GYICR
Sbjct: 4169 IYVKSGN*FCDIRTACSF*STESENALWSPRRV**NISYYEGWHQ*GVPYHQYQ*GYICR 4348
Query: 244 IQLNSASRMHNSS*IYSGWQR*GCWT*SDCTI*RXXXXXXXXXXX*PRHI*TRTTF*LFQ 65
+ SASR HNS *+Y GW R CW *SD TI*R * R+I T TF*LFQ
Sbjct: 4349 V*FYSASREHNSP*VYPGW*RKRCWA*SDRTI*RKSCGRKRRTSS*QRYIQTWATF*LFQ 4528
Query: 64 DVILLRDNCWILLLY 20
DVILL D CW+LLLY
Sbjct: 4529 DVILLCDYCWVLLLY 4573
Score = 237 bits (513), Expect = 4e-062
Identities = 127/220 (57%), Positives = 137/220 (62%)
Frame = -3 / +1
Query: 680 RKXXXXXXXXIQXXXXXXXXXXXMX*YLLXXMXXXLLI*IRXXXXXRHLK*ETCLRSSL* 501
RK IQ M *Y L M LI*IR RH K E CLR+SL
Sbjct: 3913 RKFILLNCLAIQSLGRVNPKIKTML*YSLAEMLYKPLI*IRTTISRRHSKCEICLRNSLK 4092
Query: 500 SVASITLLFLVLGSMSSREVFPPWPHLCLIRRQVL*H*DSVFLLTR*K*ECTMVIQMFLI 321
+AS +L FLVL +MSS EVFPP HLC IR+ VL*H*DSVF L *K*EC MV Q LI
Sbjct: 4093 IMASSSLQFLVLENMSSPEVFPPLLHLCQIRKLVL*H*DSVFFLIH*K*ECIMVTQTCLI 4272
Query: 320 EFFI*QGVELVRPLAASISVRIYMQDSTQLCVKDA*LIMNIFRLAKVGMLDLIRLHYLKE 141
E+FI +GV VR +SISVRIY+Q LCVK *L M+I RL K ML LIR HYLKE
Sbjct: 4273 EYFILRGVASVRRPVSSISVRIYLQGLILLCVKGT*LTMSISRLVKEEMLGLIRSHYLKE 4452
Query: 140 KLLVEMVNKFLAETYIDSDNFLTFSGCYPST*QLLDSTSV 21
KL E NKFLAE Y D NFLTFSGCYPS * LL TSV
Sbjct: 4453 KLREETANKFLAEIYTDLGNFLTFSGCYPSM*LLLGFTSV 4572
Score = 231 bits (498), Expect = 4e-060
Identities = 115/181 (63%), Positives = 123/181 (67%)
Frame = +3 / -1
Query: 69 KSQKVVRVYICLG*ELVHHFHQQLFLQIVQSD*VQHPYLCQPEYIHDELCILDAELS*IL 248
KSQKV +V I L *ELV F QLFLQIV+SD* QH +L QP Y H ELC LDAE +* L
Sbjct: 4524 KSQKVAQVCIYLC*ELVRRFLPQLFLQIVRSD*AQHLFLYQPGYTHGELCSLDAE*N*TL 4345
Query: 249 HIYPH*Y*CCERPY*FHPLLYEKFYQKHLDDHSAFSLSAG*QEHAVLMSQNLSPD*T*MR 428
IYPH*Y* PY* HP YE FYQ L DH+AFSLS *+EHAVLMSQN PD T*M+
Sbjct: 4344 QIYPH*Y**YGTPY*CHPS*YEIFYQTRLGDHNAFSLSVD*KEHAVLMSQN*FPDLT*MK 4165
Query: 429 PGRKHFP*RHAP*HQE*KGNACHASERTPQAGFSF*VPXXXXXPDSYQ*XXXHXXE*ILX 608
GRKHF *RH *HQE K CH ER PQA F+F*VP PDSYQ H E*IL
Sbjct: 4164 QGRKHFR*RHVL*HQELKA*TCHDFERIPQADFAF*VPPRNSCPDSYQWFVQHFRE*ILQ 3985
Query: 609 H 611
H
Sbjct: 3984 H 3982
Score = 159 bits (341), Expect(2) = 4e-077
Identities = 77/94 (81%), Positives = 78/94 (82%)
Frame = +2 / -3
Query: 323 SKTSG*P*CILTFSGLARTRCPNVTKLVS*LDINEAREETLPVKTCSLTPRIEG*CLPRF 502
S TSG*P*CILTFSGL RTRCPNVTKLVS* DINEAREETLPVKTCSLTPRIEG LP F
Sbjct: 4270 SNTSG*P*CILTFSGLERTRCPNVTKLVS*FDINEAREETLPVKTCSLTPRIEGLNLP*F 4091
Query: 503 RENSSSRFLILSAXSX*XS*FISIVXXAXXXVNI 604
ENSSSRF ILSA S * S*FIS+V A VNI
Sbjct: 4090 *ENSSSRFRILSASSK*LS*FISMVCTAFPRVNI 3989
Score = 149 bits (320), Expect(2) = 4e-077
Identities = 70/89 (78%), Positives = 73/89 (82%)
Frame = +2 / -3
Query: 20 VQK*NPTVVT*KDNILKKSKSCPSLYMSRLRTCSPFPPATFPSNSAIXXXXXXXXXXXXI 199
VQK*NPTVVT*KDNILKKSKSCPSLY+S LRTCSPFPPATFPSNSAI I
Sbjct: 4573 VQK*NPTVVT*KDNILKKSKSCPSLYISLLRTCSPFPPATFPSNSAI*LSPTSLPLPTWI 4394
Query: 200 YS**VMHP*RRVELNPAYISSLILMLREA 286
YS *VM P*RRVELNPA ISSLILM+R+A
Sbjct: 4393 YSW*VMFP*RRVELNPANISSLILMIRDA 4307
>gb|AV923029.1|AV923029 AV923029 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd3g22 5', mRNA sequence
Length = 611
Score = 322 bits (697), Expect = 1e-087
Identities = 128/159 (80%), Positives = 145/159 (91%)
Frame = -2 / +2
Query: 495 GKHYPSILGVREHVFTGSVSSLASFMSNQETSFVTLGQRVLANPLKVRMHYGHPDVFDRI 316
G YP+ILGVREH+FTGSVSSLA FMSNQETSFVT+GQRVLANPL+VR HYGHPD+FDR+
Sbjct: 8 GVRYPTILGVREHIFTGSVSSLAWFMSNQETSFVTIGQRVLANPLRVRFHYGHPDIFDRL 187
Query: 315 FHITRGGISKASRSINISEDIYAGFNSTLRQGCITHHEYIQVGKGRDVGLNQIALFEGKV 136
FH+TRGG+SKAS+ IN+SEDI+AGFNSTLR+G +THHEY+QVGKGRDVGLNQI+LFE K+
Sbjct: 188 FHLTRGGVSKASKIINLSEDIFAGFNSTLREGNVTHHEYMQVGKGRDVGLNQISLFEAKI 367
Query: 135 AGGNGEQVLSRDIYRLGQLFDFFRMLSFYVTTVGFYFCT 19
A GNGEQ LSRDIYRLG FDFFRMLS Y TT+GFYF T
Sbjct: 368 AYGNGEQTLSRDIYRLGHRFDFFRMLSCYYTTIGFYFST 484
Score = 140 bits (300), Expect = 9e-033
Identities = 68/155 (43%), Positives = 99/155 (63%)
Frame = +1 / -2
Query: 10 RGRGTEVESNSCHVEG*HPEKVKKLSESIYVSAKNLFTISTSNFSFK*CNLIKSNIPTFA 189
R EV++N V G H E++K +++S+ V+A++LF ++ K* NLI++NI + A
Sbjct: 493 RNHCAEVKANGSIVAGQHSEEIKTMAKSVDVTAQSLFAVTICYLRLK**NLIETNISSLA 314
Query: 190 NLNIFMMSYASLTQS*VESCIYILTDIDAARGLTNSTPCYMKNSIKNIWMTIVHSHFQRV 369
NL++FMM S TQ *+ES Y+LT ID R +TPC M+ SIK+I M+I+ S+ R+
Sbjct: 313 NLHVFMMCNVSFTQC*IESSKYVLTKIDNLRCFAYTTPCEMEESIKDIRMSIMKSNP*RI 134
Query: 370 SKNTLS*CHKTCLLIRHK*GQGGNTSREDMLPNTK 474
K TLS HKTCLL+ H+ + NT+ E M TK
Sbjct: 133 GKYTLSNSHKTCLLV*HEPRKRRNTASEYMFSYTK 29
Score = 111 bits (236), Expect = 6e-024
Identities = 58/161 (36%), Positives = 84/161 (52%)
Frame = -1 / +1
Query: 496 WQALPFYSWC*GACLHGKCFLPGLIYV*SGDKFCDIRTACSC*PAESENALWSSRCF**N 317
W + +WC +H +CF +++V DKFCD TAC+C + +LW+S *
Sbjct: 7 WCEVSNNTWCKRTYIHWQCFFACVVHVKPRDKFCDYWTACTCQSFKGSISLWTS*YL*ST 186
Query: 316 FSYNKGWN**GLSQHQYQ*GYICRIQLNSASRMHNSS*IYSGWQR*GCWT*SDCTI*RXX 137
+KGW + +Q *G+IC IQ N+A R +S*I++ WQ CW+ SD TI*
Sbjct: 187 LPSHKGWCKQSI*DYQS**GHICWIQFNTA*RKRYTS*IHASWQGKRCWSQSDFTI*GED 366
Query: 136 XXXXXXXXX*PRHI*TRTTF*LFQDVILLRDNCWILLLYLD 14
P H+ T +F* Q+V+LL W+LL + D
Sbjct: 367 SIW*RRTDSEP*HLPTWPSF*FLQNVVLLLYYHWLLLQHND 489
Score = 100 bits (212), Expect(2) = 7e-034
Identities = 54/100 (54%), Positives = 60/100 (60%)
Frame = +2 / -3
Query: 197 IYS**VMHP*RRVELNPAYISSLILMLREAXXXXXXXXXXXXSKTSG*P*CILTFSGLAR 376
+YS* V P R VELNPA +SSL L++ +A SK SG P* T GLA
Sbjct: 306 MYS*CVTFPSRSVELNPANMSSLRLIILDALLTPPLVRWKSRSKISGCP**NRTLKGLAS 127
Query: 377 TRCPNVTKLVS*LDINEAREETLPVKTCSLTPRIEG*CLP 496
TRCP VTKLVS D+N A EETLPV CSLTP I G P
Sbjct: 126 TRCPIVTKLVSWFDMNHASEETLPVNICSLTPSIVGYLTP 7
Score = 63.8 bits (133), Expect(2) = 7e-034
Identities = 32/47 (68%), Positives = 33/47 (70%)
Frame = +2 / -3
Query: 20 VQK*NPTVVT*KDNILKKSKSCPSLYMSRLRTCSPFPPATFPSNSAI 160
V K* P VV *+DNILKKSK PS MSRLR CSP P A F SNS I
Sbjct: 483 VLK*KPMVV**QDNILKKSKRWPSR*MSRLRVCSPLPYAIFASNSEI 343
>gb|BJ462458.1|BJ462458 BJ462458 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags28g06 5', mRNA sequence
Length = 666
Score = 260 bits (562), Expect = 6e-069
Identities = 105/131 (80%), Positives = 117/131 (89%)
Frame = -2 / +3
Query: 411 QETSFVTLGQRVLANPLKVRMHYGHPDVFDRIFHITRGGISKASRSINISEDIYAGFNST 232
+ETSFVTLGQRVLANPLKVRMHYGHPDVFDR++ + RGGISKASR INISEDI+AGFN T
Sbjct: 21 RETSFVTLGQRVLANPLKVRMHYGHPDVFDRLWFLGRGGISKASRVINISEDIFAGFNCT 200
Query: 231 LRQGCITHHEYIQVGKGRDVGLNQIALFEGKVAGGNGEQVLSRDIYRLGQLFDFFRMLSF 52
LR G +THHEYIQVGKGRDVGLNQ+++FE KVA GNGEQ LSRD+YRLG DFFRMLSF
Sbjct: 201 LRGGNVTHHEYIQVGKGRDVGLNQVSMFEAKVASGNGEQTLSRDVYRLGHRLDFFRMLSF 380
Query: 51 YVTTVGFYFCT 19
+ TT+GFYF T
Sbjct: 381 FYTTIGFYFNT 413
Score = 120 bits (256), Expect = 1e-026
Identities = 51/127 (40%), Positives = 85/127 (66%)
Frame = +1 / -2
Query: 25 EVESNSCHVEG*HPEKVKKLSESIYVSAKNLFTISTSNFSFK*CNLIKSNIPTFANLNIF 204
E+ESN C E HP++++ +++S+ ++A++L TI+TSN FK NL++ +IP+F NL++
Sbjct: 407 EIESNGCIKEREHPKEIQSVAQSVNITAQSLLTIATSNLGFKHRNLVEPHIPSFTNLDVL 228
Query: 205 MMSYASLTQS*VESCIYILTDIDAARGLTNSTPCYMKNSIKNIWMTIVHSHFQRVSKNTL 384
M+ + T+ +ES ILTD+D + TN+T +IK+IW+ I+HS+ + VS N+L
Sbjct: 227 MVCNIAPTEGTIESSKDILTDVDYS*CFTNTTSAQEPKTIKHIWVAIMHSNLEWVS*NSL 48
Query: 385 S*CHKTC 405
KTC
Sbjct: 47 PQSDKTC 27
Score = 81.7 bits (172), Expect(2) = 1e-024
Identities = 42/71 (59%), Positives = 47/71 (66%)
Frame = +2 / -3
Query: 197 IYS**VMHP*RRVELNPAYISSLILMLREAXXXXXXXXXXXXSKTSG*P*CILTFSGLAR 376
+YS V P RRV+LNPA ISSL+L+ +A S TSG P*CILT SGLAR
Sbjct: 235 MYSWCVTLPPRRVQLNPAKISSLMLITLDALLIPPRPKNQRRSNTSGWP*CILTLSGLAR 56
Query: 377 TRCPNVTKLVS 409
TRCP VTKLVS
Sbjct: 55 TRCPRVTKLVS 23
Score = 51.0 bits (105), Expect(2) = 1e-024
Identities = 26/44 (59%), Positives = 28/44 (63%)
Frame = +2 / -3
Query: 20 VQK*NPTVVT*KDNILKKSKSCPSLYMSRLRTCSPFPPATFPSN 151
V K*NP VV ++I KKS PSL SRLR CSP P AT SN
Sbjct: 412 VLK*NPMVV*KNESIRKKSNLWPSL*TSRLRVCSPLPLATLASN 281
>gb|BU969103.1|BU969103 HB10J09r BC Hordeum vulgare subsp. vulgare cDNA clone HB10J09
5-PRIME, mRNA sequence
Length = 426
Score = 199 bits (429), Expect = 1e-050
Identities = 82/84 (97%), Positives = 83/84 (98%)
Frame = -2 / +2
Query: 270 NISEDIYAGFNSTLRQGCITHHEYIQVGKGRDVGLNQIALFEGKVAGGNGEQVLSRDIYR 91
NISEDI+AGFNSTLRQG ITHHEYIQVGKGRDVGLNQIALFEGKVAGGNGEQVLSRDIYR
Sbjct: 11 NISEDIFAGFNSTLRQGNITHHEYIQVGKGRDVGLNQIALFEGKVAGGNGEQVLSRDIYR 190
Query: 90 LGQLFDFFRMLSFYVTTVGFYFCT 19
LGQLFDFFRMLSFYVTTVGFYFCT
Sbjct: 191 LGQLFDFFRMLSFYVTTVGFYFCT 262
Score = 140 bits (301), Expect = 6e-033
Identities = 66/86 (76%), Positives = 69/86 (80%)
Frame = +2 / -1
Query: 20 VQK*NPTVVT*KDNILKKSKSCPSLYMSRLRTCSPFPPATFPSNSAIXXXXXXXXXXXXI 199
VQK*NPTVVT*KDNILKKSKSCPSLY+S LRTCSPFPPATFPSNSAI I
Sbjct: 261 VQK*NPTVVT*KDNILKKSKSCPSLYISLLRTCSPFPPATFPSNSAI*LSPTSLPLPTWI 82
Query: 200 YS**VMHP*RRVELNPAYISSLILML 277
YS *VM P*RRVELNPA ISSLI ++
Sbjct: 81 YSW*VMFP*RRVELNPANISSLIFLV 4
Score = 137 bits (294), Expect = 6e-032
Identities = 57/86 (66%), Positives = 70/86 (81%)
Frame = +1 / -3
Query: 22 TEVESNSCHVEG*HPEKVKKLSESIYVSAKNLFTISTSNFSFK*CNLIKSNIPTFANLNI 201
TEV+ NS H+EG*HPEKVKKL +S+Y+SAKNLF +S+ NFSFK*C+LIK NI +F NL+I
Sbjct: 259 TEVKPNSSHIEG*HPEKVKKLPKSVYISAKNLFAVSSRNFSFK*CDLIKPNISSFTNLDI 80
Query: 202 FMMSYASLTQS*VESCIYILTDIDAA 279
M+SY LTQS ++ C YILTDI A
Sbjct: 79 LMVSYVPLTQSRIKPCKYILTDIPRA 2
Score = 117 bits (250), Expect = 7e-026
Identities = 57/86 (66%), Positives = 59/86 (68%)
Frame = -3 / +3
Query: 278 AASISVRIYMQDSTQLCVKDA*LIMNIFRLAKVGMLDLIRLHYLKEKLLVEMVNKFLAET 99
A ISVRIY+Q LCVK *L M+I RL K ML LIR HYLKEKL E NKFLAE
Sbjct: 3 ARGISVRIYLQGLILLCVKGT*LTMSISRLVKEEMLGLIRSHYLKEKLREETANKFLAEI 182
Query: 98 YIDSDNFLTFSGCYPST*QLLDSTSV 21
Y D NFLTFSGCYPS * LL TSV
Sbjct: 183 YTDLGNFLTFSGCYPSM*LLLGFTSV 260
Score = 107 bits (228), Expect = 7e-023
Identities = 51/84 (60%), Positives = 56/84 (66%)
Frame = -1 / +1
Query: 271 QYQ*GYICRIQLNSASRMHNSS*IYSGWQR*GCWT*SDCTI*RXXXXXXXXXXX*PRHI* 92
+YQ*GYICR+ SASR HNS *+Y GW R CW *SD TI*R * R+I
Sbjct: 10 EYQ*GYICRV*FYSASREHNSP*VYPGW*RKRCWA*SDRTI*RKSCGRKRRTSS*QRYIQ 189
Query: 91 TRTTF*LFQDVILLRDNCWILLLY 20
T TF*LFQDVILL D CW+LLLY
Sbjct: 190 TWATF*LFQDVILLCDYCWVLLLY 261
>gb|AV836635.1|AV836635 AV836635 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare seedling leaves second leaf stage Hordeum
vulgare subsp. vulgare cDNA clone basd19k01, mRNA
sequence
Length = 644
Score = 182 bits (393), Expect = 1e-045
Identities = 75/76 (98%), Positives = 75/76 (98%)
Frame = -2 / +2
Query: 246 GFNSTLRQGCITHHEYIQVGKGRDVGLNQIALFEGKVAGGNGEQVLSRDIYRLGQLFDFF 67
GFNSTLRQG ITHHEYIQVGKGRDVGLNQIALFEGKVAGGNGEQVLSRDIYRLGQLFDFF
Sbjct: 5 GFNSTLRQGNITHHEYIQVGKGRDVGLNQIALFEGKVAGGNGEQVLSRDIYRLGQLFDFF 184
Query: 66 RMLSFYVTTVGFYFCT 19
RMLSFYVTTVGFYFCT
Sbjct: 185 RMLSFYVTTVGFYFCT 232
Score = 129 bits (277), Expect = 1e-029
Identities = 60/77 (77%), Positives = 62/77 (80%)
Frame = +2 / -3
Query: 20 VQK*NPTVVT*KDNILKKSKSCPSLYMSRLRTCSPFPPATFPSNSAIXXXXXXXXXXXXI 199
VQK*NPTVVT*KDNILKKSKSCPSLY+S LRTCSPFPPATFPSNSAI I
Sbjct: 231 VQK*NPTVVT*KDNILKKSKSCPSLYISLLRTCSPFPPATFPSNSAI*LSPTSLPLPTWI 52
Query: 200 YS**VMHP*RRVELNPA 250
YS *VM P*RRVELNP+
Sbjct: 51 YSW*VMFP*RRVELNPS 1
Score = 120 bits (257), Expect = 7e-027
Identities = 49/71 (69%), Positives = 60/71 (84%)
Frame = +1 / -2
Query: 22 TEVESNSCHVEG*HPEKVKKLSESIYVSAKNLFTISTSNFSFK*CNLIKSNIPTFANLNI 201
TEV+ NS H+EG*HPEKVKKL +S+Y+SAKNLF +S+ NFSFK*C+LIK NI +F NL+I
Sbjct: 229 TEVKPNSSHIEG*HPEKVKKLPKSVYISAKNLFAVSSRNFSFK*CDLIKPNISSFTNLDI 50
Query: 202 FMMSYASLTQS 234
M+SY LTQS
Sbjct: 49 LMVSYVPLTQS 17
Score = 102 bits (218), Expect = 2e-021
Identities = 49/71 (69%), Positives = 50/71 (70%)
Frame = -3 / +3
Query: 233 LCVKDA*LIMNIFRLAKVGMLDLIRLHYLKEKLLVEMVNKFLAETYIDSDNFLTFSGCYP 54
LCVK *L M+I RL K ML LIR HYLKEKL E NKFLAE Y D NFLTFSGCYP
Sbjct: 18 LCVKGT*LTMSISRLVKEEMLGLIRSHYLKEKLREETANKFLAEIYTDLGNFLTFSGCYP 197
Query: 53 ST*QLLDSTSV 21
S * LL TSV
Sbjct: 198 SM*LLLGFTSV 230
>gb|AV934137.1|AV934137 AV934137 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal11c09 5', mRNA sequence
Length = 589
Score = 166 bits (356), Expect = 2e-040
Identities = 66/83 (79%), Positives = 74/83 (89%)
Frame = -2 / +1
Query: 267 ISEDIYAGFNSTLRQGCITHHEYIQVGKGRDVGLNQIALFEGKVAGGNGEQVLSRDIYRL 88
+SEDI+AGFNSTLR+G +THHEY+QVGKGRDVGLNQI+LFE K+A GNGEQ LSRDIYRL
Sbjct: 7 LSEDIFAGFNSTLREGNVTHHEYMQVGKGRDVGLNQISLFEAKIAYGNGEQTLSRDIYRL 186
Query: 87 GQLFDFFRMLSFYVTTVGFYFCT 19
G FDFFRMLS Y TT+GFYF T
Sbjct: 187 GHRFDFFRMLSCYYTTIGFYFST 255
>gb|BJ470174.1|BJ470174 BJ470174 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal15l17 5', mRNA sequence
Length = 537
Score = 166 bits (356), Expect = 2e-040
Identities = 66/83 (79%), Positives = 74/83 (89%)
Frame = -2 / +3
Query: 267 ISEDIYAGFNSTLRQGCITHHEYIQVGKGRDVGLNQIALFEGKVAGGNGEQVLSRDIYRL 88
+SEDI+AGFNSTLR+G +THHEY+QVGKGRDVGLNQI+LFE K+A GNGEQ LSRDIYRL
Sbjct: 18 LSEDIFAGFNSTLREGNVTHHEYMQVGKGRDVGLNQISLFEAKIAYGNGEQTLSRDIYRL 197
Query: 87 GQLFDFFRMLSFYVTTVGFYFCT 19
G FDFFRMLS Y TT+GFYF T
Sbjct: 198 GHRFDFFRMLSCYYTTIGFYFST 266
>gb|AV932586.1|AV932586 AV932586 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal1e06 5', mRNA sequence
Length = 582
Score = 74.8 bits (157), Expect(2) = 4e-026
Identities = 29/41 (70%), Positives = 35/41 (85%)
Frame = -2 / +3
Query: 237 STLRQGCITHHEYIQVGKGRDVGLNQIALFEGKVAGGNGEQ 115
+T + +THHEY+QVGKGRDVGLNQI+LFE K+A GNGEQ
Sbjct: 24 NTAXKXNVTHHEYMQVGKGRDVGLNQISLFEAKIAYGNGEQ 146
Score = 62.9 bits (131), Expect(2) = 4e-026
Identities = 25/31 (80%), Positives = 26/31 (83%)
Frame = -2 / +1
Query: 111 LSRDIYRLGQLFDFFRMLSFYVTTVGFYFCT 19
LSRDIYRLG FDFFRMLS Y TT+GFYF T
Sbjct: 151 LSRDIYRLGHRFDFFRMLSCYYTTIGFYFST 243
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 227,641,696
Number of Sequences: 312970
Number of extensions: 2910046
Number of successful extensions: 20903
Number of sequences better than 1.0e-020: 12
length of database: 58,378,179
effective HSP length: 51
effective length of database: 42,416,709
effective search space used: 7635007620
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)