TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QBTB.006E19F020311.3.1
         (789 letters)

Database: Hordeum_nucl_with_EST.fasta 
           312,970 sequences; 175,134,539 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AU252299.1|AU252299  AU252299 salt-stressed barley root c...   149   6e-044

>gb|AU252299.1|AU252299 AU252299 salt-stressed barley root cDNA Hordeum vulgare subsp.
           vulgare cDNA clone BR-M09 similar to putative ABC
           transporter, mRNA sequence
          Length = 423

 Score =  149 bits (321), Expect(2) = 6e-044
 Identities = 60/96 (62%), Positives = 74/96 (77%)
 Frame = +2 / +2

                                                                       
Query: 275 YSFISTLRVPRLVNAVSNAYLKLIKGTGVDMLLEFVKDMPKVGTXXXXXXXXXXXXXXXT 454
           +  I+ LR+PRLVN  SNAY+K ++G+GV+MLLE+VKDMPKVGT               +
Sbjct: 131 FEAIALLRLPRLVNMASNAYIKFLRGSGVEMLLEYVKDMPKVGTKMKFDLSSLLGALFFS 310

                                               
Query: 455 WIIELLFPVMLTYLVYEKQQKLRIMMKMHGLKDGPY 562
           WI+ LLFPV+LTYLVYEKQQKL+IMMKMHGLKDGP+
Sbjct: 311 WIVVLLFPVILTYLVYEKQQKLKIMMKMHGLKDGPF 418




 Score =  105 bits (225), Expect(2) = 8e-025
 Identities = 50/89 (56%), Positives = 58/89 (65%)
 Frame = -1 / -1

                                                                       
Query: 558 GPSFRPXXXXXXXXXXXXSYTRYVNITGKRSSMIHVKNKTLRREDRSN*KLVPTLGISFT 379
           GPSF+P            SYTRYV+ITG  S+ I +KN   RREDRSN   VPTLGIS T
Sbjct: 414 GPSFKPCIFIIIFSFCCFSYTRYVSITGNSSTTIQLKNSAPRREDRSNFIFVPTLGISLT 235

                                        
Query: 378 NSSSMSTPVPLINFR*ALDTAFTKRGTRN 292
            SSS+STP+PL N   AL+   TKRG+RN
Sbjct: 234 YSSSISTPLPLRNLMYALEAMLTKRGSRN 148




 Score = 47.8 bits (98), Expect(2) = 6e-044
 Identities = 17/35 (48%), Positives = 24/35 (68%)
 Frame = +2 / +1

                                              
Query: 170 GQINEFIAGYDFLGTTQYGLGVNVWYNSTYNDNNA 274
           G+ NE+ AGY FL T +  L +++ +NSTYN N A
Sbjct: 25  GKANEYAAGYSFLNTNKDSLDISILFNSTYNSNTA 129




 Score = 27.6 bits (54), Expect(2) = 8e-025
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3 / -1

                                  
Query: 241 NIYTEAILCCAQEVITCNKFVYL 173
           N   +A+  C QE +TC  F+ L
Sbjct: 96  NTNVKAVFICVQEAVTCGIFICL 28



  Database: Hordeum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:16 PM
  Number of letters in database: 175,134,539
  Number of sequences in database:  312,970
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 352,480,027
Number of Sequences: 312970
Number of extensions: 4909567
Number of successful extensions: 33759
Number of sequences better than 1.0e-020: 1
length of database: 58,378,179
effective HSP length: 52
effective length of database: 42,103,739
effective search space used: 8841785190
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)