TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBS7b05.xg.2.1
(526 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI960696.1|BI960696 HVSMEn0025O11f Hordeum vulgare rachi... 199 2e-053
gb|AV930906.1|AV930906 AV930906 K. Sato unpublished cDNA li... 187 4e-047
gb|BU967165.1|BU967165 HB03H16r BC Hordeum vulgare subsp. v... 187 4e-047
gb|BU967242.1|BU967242 HB03K11r BC Hordeum vulgare subsp. v... 187 4e-047
gb|CB860194.1|CB860194 HI12P13w HI Hordeum vulgare subsp. v... 187 4e-047
gb|CB876338.1|CB876338 HX10P19w HX Hordeum vulgare subsp. v... 187 4e-047
gb|AV931092.1|AV931092 AV931092 K. Sato unpublished cDNA li... 185 1e-046
gb|AV931093.1|AV931093 AV931093 K. Sato unpublished cDNA li... 185 1e-046
gb|BQ468619.1|BQ468619 HM01M13T HM Hordeum vulgare subsp. v... 184 2e-046
gb|BI959339.1|BI959339 HVSMEn0019E20f Hordeum vulgare rachi... 184 3e-046
gb|AV913277.1|AV913277 AV913277 K. Sato unpublished cDNA li... 184 3e-046
gb|AV913278.1|AV913278 AV913278 K. Sato unpublished cDNA li... 184 3e-046
gb|AV918571.1|AV918571 AV918571 K. Sato unpublished cDNA li... 184 3e-046
gb|AV918572.1|AV918572 AV918572 K. Sato unpublished cDNA li... 184 3e-046
gb|AV919198.1|AV919198 AV919198 K. Sato unpublished cDNA li... 184 3e-046
gb|AV920051.1|AV920051 AV920051 K. Sato unpublished cDNA li... 184 3e-046
gb|AV928513.1|AV928513 AV928513 K. Sato unpublished cDNA li... 184 3e-046
gb|AV930365.1|AV930365 AV930365 K. Sato unpublished cDNA li... 184 3e-046
gb|AV934882.1|AV934882 AV934882 K. Sato unpublished cDNA li... 184 3e-046
gb|AV936150.1|AV936150 AV936150 K. Sato unpublished cDNA li... 184 3e-046
gb|BJ466285.1|BJ466285 BJ466285 K. Sato unpublished cDNA li... 184 3e-046
gb|BQ465284.1|BQ465284 HU03C22r HU Hordeum vulgare subsp. v... 184 3e-046
gb|BM370580.2|BM370580 EBro08_SQ004_K11_R root, 3 week, dro... 184 3e-046
gb|BQ766406.1|BQ766406 EBro08_SQ005_L20_R root, 3 week, dro... 184 3e-046
gb|BU990492.1|BU990492 HF25D10r HF Hordeum vulgare subsp. v... 184 3e-046
gb|BM816139.1|BM816139 HC105G09_T3.ab1 HC Hordeum vulgare s... 183 5e-046
gb|BI776485.2|BI776485 EBpi05_SQ001_J01_R pistil, 8 DPA, no... 182 9e-046
gb|BQ660846.1|BQ660846 HI05L24u HI Hordeum vulgare subsp. v... 182 1e-045
gb|BI958555.1|BI958555 HVSMEn0015J16f Hordeum vulgare rachi... 181 3e-045
gb|BG300950.1|BG300950 HVSMEb0019A22f Hordeum vulgare seedl... 178 2e-044
gb|BI949437.1|BI949437 HVSMEl0013O09f Hordeum vulgare spike... 178 2e-044
gb|AV917031.1|AV917031 AV917031 K. Sato unpublished cDNA li... 178 2e-044
gb|BI955734.1|BI955734 HVSMEm0024E12f Hordeum vulgare green... 160 5e-041
gb|BG343763.2|BG343763 HVSMEg0006L01f Hordeum vulgare pre-a... 166 6e-041
gb|AV914933.1|AV914933 AV914933 K. Sato unpublished cDNA li... 166 8e-041
gb|AV925215.1|AV925215 AV925215 K. Sato unpublished cDNA li... 163 8e-040
gb|CA017356.1|CA017356 HV12L21u HV Hordeum vulgare subsp. v... 161 2e-039
gb|CA025840.1|CA025840 HZ53E19r HZ Hordeum vulgare subsp. v... 160 4e-039
gb|BQ469740.1|BQ469740 HZ01L16r HZ Hordeum vulgare subsp. v... 155 1e-038
gb|BU971759.1|BU971759 HB19J12r BC Hordeum vulgare subsp. v... 157 3e-038
gb|BG368285.2|BG368285 HVSMEi0017H01f Hordeum vulgare 20 DA... 155 4e-038
gb|CB875240.1|CB875240 HX07L05w HX Hordeum vulgare subsp. v... 155 4e-038
gb|CB875201.1|CB875201 HX07J05w HX Hordeum vulgare subsp. v... 155 4e-038
gb|BJ460872.1|BJ460872 BJ460872 K. Sato unpublished cDNA li... 155 4e-038
gb|BJ447699.1|BJ447699 BJ447699 K. Sato unpublished cDNA li... 155 4e-038
gb|BQ660756.1|BQ660756 HI05F03u HI Hordeum vulgare subsp. v... 155 4e-038
gb|BJ455449.1|BJ455449 BJ455449 K. Sato unpublished cDNA li... 155 4e-038
gb|AV929091.1|AV929091 AV929091 K. Sato unpublished cDNA li... 155 4e-038
gb|BM816138.1|BM816138 HC109B12_T3.ab1 HC Hordeum vulgare s... 142 7e-038
gb|AL499724.1|AL499724 AL499724 Hordeum vulgare Barke etiol... 155 1e-037
gb|AL503512.1|AL503512 AL503512 Hordeum vulgare Barke roots... 155 2e-037
gb|CA030647.1|CA030647 HX07L05r HX Hordeum vulgare subsp. v... 155 2e-037
gb|CA030609.1|CA030609 HX07J05r HX Hordeum vulgare subsp. v... 155 2e-037
gb|BF259974.3|BF259974 HVSMEf0020M07f Hordeum vulgare seedl... 150 4e-036
gb|AV923333.1|AV923333 AV923333 K. Sato unpublished cDNA li... 150 4e-036
gb|BJ468308.1|BJ468308 BJ468308 K. Sato unpublished cDNA li... 148 6e-036
gb|BU986849.1|BU986849 HF13B10r HF Hordeum vulgare subsp. v... 149 1e-035
gb|AJ462437.1|AJ462437 AJ462437 S00002 Hordeum vulgare subs... 149 1e-035
gb|BQ663566.1|BQ663566 HU03C22u HU Hordeum vulgare subsp. v... 146 1e-034
gb|AV923841.1|AV923841 AV923841 K. Sato unpublished cDNA li... 145 2e-034
gb|BJ447591.1|BJ447591 BJ447591 K. Sato unpublished cDNA li... 137 4e-032
gb|AL503049.1|AL503049 AL503049 Hordeum vulgare Barke roots... 130 1e-030
gb|BI959331.1|BI959331 HVSMEn0019E12f Hordeum vulgare rachi... 130 5e-030
gb|CA011082.1|CA011082 HT07B01u HT Hordeum vulgare subsp. v... 129 1e-029
gb|BE411751.1|BE411751 ISC008.H06F990806 ITEC ISC Barley Le... 120 3e-029
gb|BI956663.1|BI956663 HVSMEn0004K08f Hordeum vulgare rachi... 124 3e-028
gb|BE411894.1|BE411894 ISC010.D05F990917 ITEC ISC Barley Le... 111 4e-028
gb|CA015920.1|CA015920 HV11G20u HV Hordeum vulgare subsp. v... 123 5e-028
gb|AV914152.1|AV914152 AV914152 K. Sato unpublished cDNA li... 122 1e-027
gb|AV927219.1|AV927219 AV927219 K. Sato unpublished cDNA li... 116 6e-026
gb|BI956576.1|BI956576 HVSMEn0004D17f Hordeum vulgare rachi... 115 2e-025
gb|BE060456.3|BE060456 HVSMEg0012F17f Hordeum vulgare pre-a... 114 3e-025
gb|BQ464910.1|BQ464910 HU02B19r HU Hordeum vulgare subsp. v... 110 6e-025
gb|BF259601.3|BF259601 HVSMEf0019M06f Hordeum vulgare seedl... 111 2e-024
gb|BG299430.2|BG299430 HVSMEa0019P14f Hordeum vulgare seedl... 95 6e-022
>gb|BI960696.1|BI960696 HVSMEn0025O11f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0025O11f, mRNA sequence
Length = 658
Score = 199 bits (430), Expect(2) = 2e-053
Identities = 77/85 (90%), Positives = 82/85 (96%)
Frame = -2 / -2
Query: 489 SDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLL 310
SDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKG MGRQNRTPTIV+IWSVLLAS+FSLL
Sbjct: 417 SDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGFMGRQNRTPTIVIIWSVLLASMFSLL 238
Query: 309 WVRIDPFIVRTKGPDVRQCGINC*A 235
WVRIDPF V+ KGPDV+QCGINC*+
Sbjct: 237 WVRIDPFTVKAKGPDVKQCGINC*S 163
Score = 169 bits (363), Expect(2) = 1e-041
Identities = 71/84 (84%), Positives = 73/84 (86%)
Frame = +2 / +2
Query: 239 QQLMPHCLTSGPLVLTMKGSILTQSREKMEASSTDQMTTMVGVRFWRPMSPLRNG*RWTM 418
QQLMPHC TSGPL LT+KGSILTQSRE MEASSTD M TMVGV F PM PLRNG*R T+
Sbjct: 167 QQLMPHCFTSGPLALTVKGSILTQSRENMEASSTDHMMTMVGVLFCLPMKPLRNG*RCTI 346
Query: 419 TQKAKKSLPKSGPHDWYPLLMASE 490
TQKAKKSLP SGPHDWYPLLMASE
Sbjct: 347 TQKAKKSLPNSGPHDWYPLLMASE 418
Score = 111 bits (238), Expect = 2e-024
Identities = 52/86 (60%), Positives = 56/86 (65%)
Frame = -1 / -1
Query: 469 VPVVGPALRQAXXXXXXXXXXXXXPQGAHGAPEPDAHHCRHLVRAAGLHLLPALGQDRSL 290
VPVVG A+R A PQG HG E DAHHC H+VRAA LH+LPALGQDR L
Sbjct: 397 VPVVGAAIR*ALLRLLGDRASLPVPQGFHGEAEQDAHHCHHMVRAASLHVLPALGQDRPL 218
Query: 289 HRQDQGARRQAVWHQLLSCLSRFKKV 212
HRQ QGA R+AV HQLL L FK V
Sbjct: 217 HRQGQGA*REAVRHQLLIALRVFKPV 140
Score = 29.0 bits (57), Expect(2) = 2e-053
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2 / -1
Query: 186 NSLEILCCHVLELICYVLCNVLGPR 112
NSL+ + CYVLCN+LG R
Sbjct: 127 NSLDASFVLLTFCSCYVLCNILGAR 53
Score = 21.7 bits (41), Expect(2) = 1e-041
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +2 / +3
Query: 113 LGPRTLHKT*HMSSKT*QHKISKL 184
L P+ LH+T*H + SKL
Sbjct: 54 LAPKILHRT*HEQNVNNTKLASKL 125
>gb|AV930906.1|AV930906 AV930906 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd25l19 3', mRNA sequence
Length = 505
Score = 187 bits (403), Expect = 4e-047
Identities = 71/84 (84%), Positives = 78/84 (92%)
Frame = -2 / -1
Query: 489 SDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLL 310
S AIN+GYQSWGPLFGKLFFAFWVI+HLYPFLKGLMGRQNRTPTIVV+W++LLASIFSLL
Sbjct: 346 SYAINSGYQSWGPLFGKLFFAFWVIIHLYPFLKGLMGRQNRTPTIVVVWAILLASIFSLL 167
Query: 309 WVRIDPFIVRTKGPDVRQCGINC* 238
WVRIDPF R GPD++ CGINC*
Sbjct: 166 WVRIDPFTTRVTGPDIQMCGINC* 95
Score = 123 bits (263), Expect = 8e-028
Identities = 53/83 (63%), Positives = 62/83 (74%)
Frame = +2 / +3
Query: 242 QLMPHCLTSGPLVLTMKGSILTQSREKMEASSTDQMTTMVGVRFWRPMSPLRNG*RWTMT 421
QLMPH SGP+ + GS+ T S+EKM+A Q TTMVGVRF RP+SPLRNG +W +T
Sbjct: 99 QLMPHIWISGPVTRVVNGSMRTHSKEKMDARRMAQTTTMVGVRFCRPISPLRNGYKWIIT 278
Query: 422 QKAKKSLPKSGPHDWYPLLMASE 490
QKAKKS PKSGPHD PLL+A E
Sbjct: 279 QKAKKSFPKSGPHD**PLLIA*E 347
>gb|BU967165.1|BU967165 HB03H16r BC Hordeum vulgare subsp. vulgare cDNA clone HB03H16
5-PRIME, mRNA sequence
Length = 471
Score = 187 bits (403), Expect = 4e-047
Identities = 71/84 (84%), Positives = 78/84 (92%)
Frame = -2 / +2
Query: 489 SDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLL 310
S AIN+GYQSWGPLFGKLFFAFWVI+HLYPFLKGLMGRQNRTPTIVV+W++LLASIFSLL
Sbjct: 41 SYAINSGYQSWGPLFGKLFFAFWVIIHLYPFLKGLMGRQNRTPTIVVVWAILLASIFSLL 220
Query: 309 WVRIDPFIVRTKGPDVRQCGINC* 238
WVRIDPF R GPD++ CGINC*
Sbjct: 221 WVRIDPFTTRVTGPDIQMCGINC* 292
Score = 123 bits (263), Expect = 8e-028
Identities = 53/83 (63%), Positives = 62/83 (74%)
Frame = +2 / -1
Query: 242 QLMPHCLTSGPLVLTMKGSILTQSREKMEASSTDQMTTMVGVRFWRPMSPLRNG*RWTMT 421
QLMPH SGP+ + GS+ T S+EKM+A Q TTMVGVRF RP+SPLRNG +W +T
Sbjct: 288 QLMPHIWISGPVTRVVNGSMRTHSKEKMDARRMAQTTTMVGVRFCRPISPLRNGYKWIIT 109
Query: 422 QKAKKSLPKSGPHDWYPLLMASE 490
QKAKKS PKSGPHD PLL+A E
Sbjct: 108 QKAKKSFPKSGPHD**PLLIA*E 40
>gb|BU967242.1|BU967242 HB03K11r BC Hordeum vulgare subsp. vulgare cDNA clone HB03K11
5-PRIME, mRNA sequence
Length = 577
Score = 187 bits (403), Expect = 4e-047
Identities = 71/84 (84%), Positives = 78/84 (92%)
Frame = -2 / +1
Query: 489 SDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLL 310
S AIN+GYQSWGPLFGKLFFAFWVI+HLYPFLKGLMGRQNRTPTIVV+W++LLASIFSLL
Sbjct: 265 SYAINSGYQSWGPLFGKLFFAFWVIIHLYPFLKGLMGRQNRTPTIVVVWAILLASIFSLL 444
Query: 309 WVRIDPFIVRTKGPDVRQCGINC* 238
WVRIDPF R GPD++ CGINC*
Sbjct: 445 WVRIDPFTTRVTGPDIQMCGINC* 516
Score = 123 bits (263), Expect = 8e-028
Identities = 53/83 (63%), Positives = 62/83 (74%)
Frame = +2 / -3
Query: 242 QLMPHCLTSGPLVLTMKGSILTQSREKMEASSTDQMTTMVGVRFWRPMSPLRNG*RWTMT 421
QLMPH SGP+ + GS+ T S+EKM+A Q TTMVGVRF RP+SPLRNG +W +T
Sbjct: 512 QLMPHIWISGPVTRVVNGSMRTHSKEKMDARRMAQTTTMVGVRFCRPISPLRNGYKWIIT 333
Query: 422 QKAKKSLPKSGPHDWYPLLMASE 490
QKAKKS PKSGPHD PLL+A E
Sbjct: 332 QKAKKSFPKSGPHD**PLLIA*E 264
>gb|CB860194.1|CB860194 HI12P13w HI Hordeum vulgare subsp. vulgare cDNA clone HI12P13
3-PRIME, mRNA sequence
Length = 651
Score = 187 bits (403), Expect = 4e-047
Identities = 71/84 (84%), Positives = 78/84 (92%)
Frame = -2 / -1
Query: 489 SDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLL 310
S AIN+GYQSWGPLFGKLFFAFWVI+HLYPFLKGLMGRQNRTPTIVV+W++LLASIFSLL
Sbjct: 402 SYAINSGYQSWGPLFGKLFFAFWVIIHLYPFLKGLMGRQNRTPTIVVVWAILLASIFSLL 223
Query: 309 WVRIDPFIVRTKGPDVRQCGINC* 238
WVRIDPF R GPD++ CGINC*
Sbjct: 222 WVRIDPFTTRVTGPDIQMCGINC* 151
Score = 123 bits (263), Expect = 8e-028
Identities = 53/83 (63%), Positives = 62/83 (74%)
Frame = +2 / +2
Query: 242 QLMPHCLTSGPLVLTMKGSILTQSREKMEASSTDQMTTMVGVRFWRPMSPLRNG*RWTMT 421
QLMPH SGP+ + GS+ T S+EKM+A Q TTMVGVRF RP+SPLRNG +W +T
Sbjct: 155 QLMPHIWISGPVTRVVNGSMRTHSKEKMDARRMAQTTTMVGVRFCRPISPLRNGYKWIIT 334
Query: 422 QKAKKSLPKSGPHDWYPLLMASE 490
QKAKKS PKSGPHD PLL+A E
Sbjct: 335 QKAKKSFPKSGPHD**PLLIA*E 403
>gb|CB876338.1|CB876338 HX10P19w HX Hordeum vulgare subsp. vulgare cDNA clone HX10P19
3-PRIME, mRNA sequence
Length = 616
Score = 187 bits (403), Expect = 4e-047
Identities = 71/84 (84%), Positives = 78/84 (92%)
Frame = -2 / -2
Query: 489 SDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLL 310
S AIN+GYQSWGPLFGKLFFAFWVI+HLYPFLKGLMGRQNRTPTIVV+W++LLASIFSLL
Sbjct: 345 SYAINSGYQSWGPLFGKLFFAFWVIIHLYPFLKGLMGRQNRTPTIVVVWAILLASIFSLL 166
Query: 309 WVRIDPFIVRTKGPDVRQCGINC* 238
WVRIDPF R GPD++ CGINC*
Sbjct: 165 WVRIDPFTTRVTGPDIQMCGINC* 94
Score = 123 bits (263), Expect = 8e-028
Identities = 53/83 (63%), Positives = 62/83 (74%)
Frame = +2 / +2
Query: 242 QLMPHCLTSGPLVLTMKGSILTQSREKMEASSTDQMTTMVGVRFWRPMSPLRNG*RWTMT 421
QLMPH SGP+ + GS+ T S+EKM+A Q TTMVGVRF RP+SPLRNG +W +T
Sbjct: 98 QLMPHIWISGPVTRVVNGSMRTHSKEKMDARRMAQTTTMVGVRFCRPISPLRNGYKWIIT 277
Query: 422 QKAKKSLPKSGPHDWYPLLMASE 490
QKAKKS PKSGPHD PLL+A E
Sbjct: 278 QKAKKSFPKSGPHD**PLLIA*E 346
>gb|AV931092.1|AV931092 AV931092 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd18i05 3', mRNA sequence
Length = 658
Score = 185 bits (399), Expect = 1e-046
Identities = 71/84 (84%), Positives = 77/84 (91%)
Frame = -2 / -2
Query: 489 SDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLL 310
S AIN GYQSWGPLFGKLFFAFWVI+HLYPFLKGLMGRQNRTPTIVV+W++LLASIFSLL
Sbjct: 402 SYAINIGYQSWGPLFGKLFFAFWVIIHLYPFLKGLMGRQNRTPTIVVVWAILLASIFSLL 223
Query: 309 WVRIDPFIVRTKGPDVRQCGINC* 238
WVRIDPF R GPD++ CGINC*
Sbjct: 222 WVRIDPFTTRVTGPDIQMCGINC* 151
Score = 122 bits (261), Expect = 1e-027
Identities = 52/83 (62%), Positives = 62/83 (74%)
Frame = +2 / +2
Query: 242 QLMPHCLTSGPLVLTMKGSILTQSREKMEASSTDQMTTMVGVRFWRPMSPLRNG*RWTMT 421
QLMPH SGP+ + GS+ T S+EKM+A Q TTMVGVRF RP+SPLRNG +W +T
Sbjct: 155 QLMPHIWISGPVTRVVNGSMRTHSKEKMDARRMAQTTTMVGVRFCRPISPLRNGYKWIIT 334
Query: 422 QKAKKSLPKSGPHDWYPLLMASE 490
QKAKKS PKSGPHD P+L+A E
Sbjct: 335 QKAKKSFPKSGPHD**PMLIA*E 403
>gb|AV931093.1|AV931093 AV931093 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd18i06 3', mRNA sequence
Length = 658
Score = 185 bits (399), Expect = 1e-046
Identities = 71/84 (84%), Positives = 77/84 (91%)
Frame = -2 / -1
Query: 489 SDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLL 310
S AIN GYQSWGPLFGKLFFAFWVI+HLYPFLKGLMGRQNRTPTIVV+W++LLASIFSLL
Sbjct: 409 SYAINIGYQSWGPLFGKLFFAFWVIIHLYPFLKGLMGRQNRTPTIVVVWAILLASIFSLL 230
Query: 309 WVRIDPFIVRTKGPDVRQCGINC* 238
WVRIDPF R GPD++ CGINC*
Sbjct: 229 WVRIDPFTTRVTGPDIQMCGINC* 158
Score = 122 bits (261), Expect = 1e-027
Identities = 52/83 (62%), Positives = 62/83 (74%)
Frame = +2 / +3
Query: 242 QLMPHCLTSGPLVLTMKGSILTQSREKMEASSTDQMTTMVGVRFWRPMSPLRNG*RWTMT 421
QLMPH SGP+ + GS+ T S+EKM+A Q TTMVGVRF RP+SPLRNG +W +T
Sbjct: 162 QLMPHIWISGPVTRVVNGSMRTHSKEKMDARRMAQTTTMVGVRFCRPISPLRNGYKWIIT 341
Query: 422 QKAKKSLPKSGPHDWYPLLMASE 490
QKAKKS PKSGPHD P+L+A E
Sbjct: 342 QKAKKSFPKSGPHD**PMLIA*E 410
>gb|BQ468619.1|BQ468619 HM01M13T HM Hordeum vulgare subsp. vulgare cDNA clone HM01M13
5-PRIME, mRNA sequence
Length = 653
Score = 184 bits (397), Expect = 2e-046
Identities = 70/84 (83%), Positives = 77/84 (91%)
Frame = -2 / +3
Query: 489 SDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLL 310
S AIN+GYQSWGPLFGKLFFAFWVI+HLYPFLKGLMGRQNRTPTIVV+W++LLA IFSLL
Sbjct: 360 SYAINSGYQSWGPLFGKLFFAFWVIIHLYPFLKGLMGRQNRTPTIVVVWAILLAYIFSLL 539
Query: 309 WVRIDPFIVRTKGPDVRQCGINC* 238
WVRIDPF R GPD++ CGINC*
Sbjct: 540 WVRIDPFTTRVTGPDIQMCGINC* 611
Score = 121 bits (259), Expect = 3e-027
Identities = 53/83 (63%), Positives = 61/83 (73%)
Frame = +2 / -2
Query: 242 QLMPHCLTSGPLVLTMKGSILTQSREKMEASSTDQMTTMVGVRFWRPMSPLRNG*RWTMT 421
QLMPH SGP+ + GS+ T S+EKM A Q TTMVGVRF RP+SPLRNG +W +T
Sbjct: 607 QLMPHIWISGPVTRVVNGSMRTHSKEKMYARRMAQTTTMVGVRFCRPISPLRNGYKWIIT 428
Query: 422 QKAKKSLPKSGPHDWYPLLMASE 490
QKAKKS PKSGPHD PLL+A E
Sbjct: 427 QKAKKSFPKSGPHD**PLLIA*E 359
>gb|BI959339.1|BI959339 HVSMEn0019E20f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0019E20f, mRNA sequence
Length = 681
Score = 184 bits (396), Expect = 3e-046
Identities = 70/84 (83%), Positives = 78/84 (92%)
Frame = -2 / -2
Query: 489 SDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLL 310
S AIN+GYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIV++W+VLLASIFSLL
Sbjct: 584 SYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVIVWAVLLASIFSLL 405
Query: 309 WVRIDPFIVRTKGPDVRQCGINC* 238
WVR+DPF R GP+++ CGINC*
Sbjct: 404 WVRVDPFTTRLAGPNIQTCGINC* 333
Score = 104 bits (221), Expect = 5e-022
Identities = 48/83 (57%), Positives = 55/83 (66%)
Frame = +2 / +1
Query: 242 QLMPHCLTSGPLVLTMKGSILTQSREKMEASSTDQMTTMVGVRFWRPMSPLRNG*RWTMT 421
QLMP GP + GS T S+EK+EA T Q T+VGVRF P+ PLR G + T+T
Sbjct: 337 QLMPQVWIFGPARRVVNGSTRTHSKEKIEARRTAQTMTIVGVRFCLPIRPLRKGYK*TIT 516
Query: 422 QKAKKSLPKSGPHDWYPLLMASE 490
QKAKKS PKSGP DW PLLMA E
Sbjct: 517 QKAKKSFPKSGPQDW*PLLMA*E 585
>gb|AV913277.1|AV913277 AV913277 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21i03 5', mRNA sequence
Length = 631
Score = 184 bits (396), Expect = 3e-046
Identities = 70/84 (83%), Positives = 78/84 (92%)
Frame = -2 / +1
Query: 489 SDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLL 310
S AIN+GYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIV++W+VLLASIFSLL
Sbjct: 250 SYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVIVWAVLLASIFSLL 429
Query: 309 WVRIDPFIVRTKGPDVRQCGINC* 238
WVR+DPF R GP+++ CGINC*
Sbjct: 430 WVRVDPFTTRLAGPNIQTCGINC* 501
Score = 104 bits (221), Expect = 5e-022
Identities = 48/83 (57%), Positives = 55/83 (66%)
Frame = +2 / -3
Query: 242 QLMPHCLTSGPLVLTMKGSILTQSREKMEASSTDQMTTMVGVRFWRPMSPLRNG*RWTMT 421
QLMP GP + GS T S+EK+EA T Q T+VGVRF P+ PLR G + T+T
Sbjct: 497 QLMPQVWIFGPARRVVNGSTRTHSKEKIEARRTAQTMTIVGVRFCLPIRPLRKGYK*TIT 318
Query: 422 QKAKKSLPKSGPHDWYPLLMASE 490
QKAKKS PKSGP DW PLLMA E
Sbjct: 317 QKAKKSFPKSGPQDW*PLLMA*E 249
>gb|AV913278.1|AV913278 AV913278 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21i04 5', mRNA sequence
Length = 604
Score = 184 bits (396), Expect = 3e-046
Identities = 70/84 (83%), Positives = 78/84 (92%)
Frame = -2 / +3
Query: 489 SDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLL 310
S AIN+GYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIV++W+VLLASIFSLL
Sbjct: 249 SYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVIVWAVLLASIFSLL 428
Query: 309 WVRIDPFIVRTKGPDVRQCGINC* 238
WVR+DPF R GP+++ CGINC*
Sbjct: 429 WVRVDPFTTRLAGPNIQTCGINC* 500
Score = 104 bits (221), Expect = 5e-022
Identities = 48/83 (57%), Positives = 55/83 (66%)
Frame = +2 / -1
Query: 242 QLMPHCLTSGPLVLTMKGSILTQSREKMEASSTDQMTTMVGVRFWRPMSPLRNG*RWTMT 421
QLMP GP + GS T S+EK+EA T Q T+VGVRF P+ PLR G + T+T
Sbjct: 496 QLMPQVWIFGPARRVVNGSTRTHSKEKIEARRTAQTMTIVGVRFCLPIRPLRKGYK*TIT 317
Query: 422 QKAKKSLPKSGPHDWYPLLMASE 490
QKAKKS PKSGP DW PLLMA E
Sbjct: 316 QKAKKSFPKSGPQDW*PLLMA*E 248
>gb|AV918571.1|AV918571 AV918571 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21i03 3', mRNA sequence
Length = 598
Score = 184 bits (396), Expect = 3e-046
Identities = 70/84 (83%), Positives = 78/84 (92%)
Frame = -2 / -2
Query: 489 SDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLL 310
S AIN+GYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIV++W+VLLASIFSLL
Sbjct: 546 SYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVIVWAVLLASIFSLL 367
Query: 309 WVRIDPFIVRTKGPDVRQCGINC* 238
WVR+DPF R GP+++ CGINC*
Sbjct: 366 WVRVDPFTTRLAGPNIQTCGINC* 295
Score = 104 bits (221), Expect = 5e-022
Identities = 48/83 (57%), Positives = 55/83 (66%)
Frame = +2 / +2
Query: 242 QLMPHCLTSGPLVLTMKGSILTQSREKMEASSTDQMTTMVGVRFWRPMSPLRNG*RWTMT 421
QLMP GP + GS T S+EK+EA T Q T+VGVRF P+ PLR G + T+T
Sbjct: 299 QLMPQVWIFGPARRVVNGSTRTHSKEKIEARRTAQTMTIVGVRFCLPIRPLRKGYK*TIT 478
Query: 422 QKAKKSLPKSGPHDWYPLLMASE 490
QKAKKS PKSGP DW PLLMA E
Sbjct: 479 QKAKKSFPKSGPQDW*PLLMA*E 547
>gb|AV918572.1|AV918572 AV918572 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21i04 3', mRNA sequence
Length = 649
Score = 184 bits (396), Expect = 3e-046
Identities = 70/84 (83%), Positives = 78/84 (92%)
Frame = -2 / -3
Query: 489 SDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLL 310
S AIN+GYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIV++W+VLLASIFSLL
Sbjct: 506 SYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVIVWAVLLASIFSLL 327
Query: 309 WVRIDPFIVRTKGPDVRQCGINC* 238
WVR+DPF R GP+++ CGINC*
Sbjct: 326 WVRVDPFTTRLAGPNIQTCGINC* 255
Score = 104 bits (221), Expect = 5e-022
Identities = 48/83 (57%), Positives = 55/83 (66%)
Frame = +2 / +1
Query: 242 QLMPHCLTSGPLVLTMKGSILTQSREKMEASSTDQMTTMVGVRFWRPMSPLRNG*RWTMT 421
QLMP GP + GS T S+EK+EA T Q T+VGVRF P+ PLR G + T+T
Sbjct: 259 QLMPQVWIFGPARRVVNGSTRTHSKEKIEARRTAQTMTIVGVRFCLPIRPLRKGYK*TIT 438
Query: 422 QKAKKSLPKSGPHDWYPLLMASE 490
QKAKKS PKSGP DW PLLMA E
Sbjct: 439 QKAKKSFPKSGPQDW*PLLMA*E 507
>gb|AV919198.1|AV919198 AV919198 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags4p09 3', mRNA sequence
Length = 631
Score = 184 bits (396), Expect = 3e-046
Identities = 70/84 (83%), Positives = 78/84 (92%)
Frame = -2 / -3
Query: 489 SDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLL 310
S AIN+GYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIV++W+VLLASIFSLL
Sbjct: 563 SYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVIVWAVLLASIFSLL 384
Query: 309 WVRIDPFIVRTKGPDVRQCGINC* 238
WVR+DPF R GP+++ CGINC*
Sbjct: 383 WVRVDPFTTRLAGPNIQTCGINC* 312
Score = 104 bits (221), Expect = 5e-022
Identities = 48/83 (57%), Positives = 55/83 (66%)
Frame = +2 / +1
Query: 242 QLMPHCLTSGPLVLTMKGSILTQSREKMEASSTDQMTTMVGVRFWRPMSPLRNG*RWTMT 421
QLMP GP + GS T S+EK+EA T Q T+VGVRF P+ PLR G + T+T
Sbjct: 316 QLMPQVWIFGPARRVVNGSTRTHSKEKIEARRTAQTMTIVGVRFCLPIRPLRKGYK*TIT 495
Query: 422 QKAKKSLPKSGPHDWYPLLMASE 490
QKAKKS PKSGP DW PLLMA E
Sbjct: 496 QKAKKSFPKSGPQDW*PLLMA*E 564
>gb|AV920051.1|AV920051 AV920051 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags9b06 3', mRNA sequence
Length = 680
Score = 184 bits (396), Expect = 3e-046
Identities = 70/84 (83%), Positives = 78/84 (92%)
Frame = -2 / -1
Query: 489 SDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLL 310
S AIN+GYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIV++W+VLLASIFSLL
Sbjct: 563 SYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVIVWAVLLASIFSLL 384
Query: 309 WVRIDPFIVRTKGPDVRQCGINC* 238
WVR+DPF R GP+++ CGINC*
Sbjct: 383 WVRVDPFTTRLAGPNIQTCGINC* 312
Score = 104 bits (221), Expect = 5e-022
Identities = 48/83 (57%), Positives = 55/83 (66%)
Frame = +2 / +1
Query: 242 QLMPHCLTSGPLVLTMKGSILTQSREKMEASSTDQMTTMVGVRFWRPMSPLRNG*RWTMT 421
QLMP GP + GS T S+EK+EA T Q T+VGVRF P+ PLR G + T+T
Sbjct: 316 QLMPQVWIFGPARRVVNGSTRTHSKEKIEARRTAQTMTIVGVRFCLPIRPLRKGYK*TIT 495
Query: 422 QKAKKSLPKSGPHDWYPLLMASE 490
QKAKKS PKSGP DW PLLMA E
Sbjct: 496 QKAKKSFPKSGPQDW*PLLMA*E 564
>gb|AV928513.1|AV928513 AV928513 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basdl12 3', mRNA sequence
Length = 661
Score = 184 bits (396), Expect = 3e-046
Identities = 70/84 (83%), Positives = 78/84 (92%)
Frame = -2 / -1
Query: 489 SDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLL 310
SDA+NNGY SWGPLFGKLFF+FWVIVHLYPFLKGLMGRQNRTPTIVV+WSVLLASIFSL+
Sbjct: 418 SDAVNNGYGSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVLWSVLLASIFSLV 239
Query: 309 WVRIDPFIVRTKGPDVRQCGINC* 238
WVRIDPFI + KGP ++ CG+ C*
Sbjct: 238 WVRIDPFIAKPKGPILKPCGVQC* 167
Score = 146 bits (313), Expect = 1e-034
Identities = 64/84 (76%), Positives = 66/84 (78%)
Frame = +2 / +3
Query: 239 QQLMPHCLTSGPLVLTMKGSILTQSREKMEASSTDQMTTMVGVRFWRPMSPLRNG*RWTM 418
Q PH L GPL L MKGSILT +REKMEAS TDQ TTMVGVRF PMSPLRNG*RWTM
Sbjct: 168 QHCTPHGLRMGPLGLAMKGSILTHTREKMEASRTDQSTTMVGVRFCLPMSPLRNG*RWTM 347
Query: 419 TQKAKKSLPKSGPHDWYPLLMASE 490
TQK KKS PKSGP D YPLL AS+
Sbjct: 348 TQKEKKSFPKSGPQDPYPLLTASD 419
>gb|AV930365.1|AV930365 AV930365 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd22e04 3', mRNA sequence
Length = 604
Score = 184 bits (396), Expect = 3e-046
Identities = 70/84 (83%), Positives = 78/84 (92%)
Frame = -2 / -2
Query: 489 SDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLL 310
S AIN+GYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIV++W+VLLASIFSLL
Sbjct: 429 SYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVIVWAVLLASIFSLL 250
Query: 309 WVRIDPFIVRTKGPDVRQCGINC* 238
WVR+DPF R GP+++ CGINC*
Sbjct: 249 WVRVDPFTTRLAGPNIQTCGINC* 178
Score = 104 bits (221), Expect = 5e-022
Identities = 48/83 (57%), Positives = 55/83 (66%)
Frame = +2 / +2
Query: 242 QLMPHCLTSGPLVLTMKGSILTQSREKMEASSTDQMTTMVGVRFWRPMSPLRNG*RWTMT 421
QLMP GP + GS T S+EK+EA T Q T+VGVRF P+ PLR G + T+T
Sbjct: 182 QLMPQVWIFGPARRVVNGSTRTHSKEKIEARRTAQTMTIVGVRFCLPIRPLRKGYK*TIT 361
Query: 422 QKAKKSLPKSGPHDWYPLLMASE 490
QKAKKS PKSGP DW PLLMA E
Sbjct: 362 QKAKKSFPKSGPQDW*PLLMA*E 430
>gb|AV934882.1|AV934882 AV934882 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal2a04 3', mRNA sequence
Length = 650
Score = 184 bits (396), Expect = 3e-046
Identities = 70/84 (83%), Positives = 78/84 (92%)
Frame = -2 / -1
Query: 489 SDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLL 310
S AIN+GYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIV++W+VLLASIFSLL
Sbjct: 563 SYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVIVWAVLLASIFSLL 384
Query: 309 WVRIDPFIVRTKGPDVRQCGINC* 238
WVR+DPF R GP+++ CGINC*
Sbjct: 383 WVRVDPFTTRLAGPNIQTCGINC* 312
Score = 104 bits (221), Expect = 5e-022
Identities = 48/83 (57%), Positives = 55/83 (66%)
Frame = +2 / +1
Query: 242 QLMPHCLTSGPLVLTMKGSILTQSREKMEASSTDQMTTMVGVRFWRPMSPLRNG*RWTMT 421
QLMP GP + GS T S+EK+EA T Q T+VGVRF P+ PLR G + T+T
Sbjct: 316 QLMPQVWIFGPARRVVNGSTRTHSKEKIEARRTAQTMTIVGVRFCLPIRPLRKGYK*TIT 495
Query: 422 QKAKKSLPKSGPHDWYPLLMASE 490
QKAKKS PKSGP DW PLLMA E
Sbjct: 496 QKAKKSFPKSGPQDW*PLLMA*E 564
>gb|AV936150.1|AV936150 AV936150 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal10e13 3', mRNA sequence
Length = 616
Score = 184 bits (396), Expect = 3e-046
Identities = 70/84 (83%), Positives = 78/84 (92%)
Frame = -2 / -2
Query: 489 SDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLL 310
S AIN+GYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIV++W+VLLASIFSLL
Sbjct: 549 SYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVIVWAVLLASIFSLL 370
Query: 309 WVRIDPFIVRTKGPDVRQCGINC* 238
WVR+DPF R GP+++ CGINC*
Sbjct: 369 WVRVDPFTTRLAGPNIQTCGINC* 298
Score = 104 bits (221), Expect = 5e-022
Identities = 48/83 (57%), Positives = 55/83 (66%)
Frame = +2 / +2
Query: 242 QLMPHCLTSGPLVLTMKGSILTQSREKMEASSTDQMTTMVGVRFWRPMSPLRNG*RWTMT 421
QLMP GP + GS T S+EK+EA T Q T+VGVRF P+ PLR G + T+T
Sbjct: 302 QLMPQVWIFGPARRVVNGSTRTHSKEKIEARRTAQTMTIVGVRFCLPIRPLRKGYK*TIT 481
Query: 422 QKAKKSLPKSGPHDWYPLLMASE 490
QKAKKS PKSGP DW PLLMA E
Sbjct: 482 QKAKKSFPKSGPQDW*PLLMA*E 550
>gb|BJ466285.1|BJ466285 BJ466285 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags31h15 3', mRNA sequence
Length = 669
Score = 184 bits (396), Expect = 3e-046
Identities = 70/84 (83%), Positives = 78/84 (92%)
Frame = -2 / -1
Query: 489 SDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLL 310
S AIN+GYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIV++W+VLLASIFSLL
Sbjct: 522 SYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVIVWAVLLASIFSLL 343
Query: 309 WVRIDPFIVRTKGPDVRQCGINC* 238
WVR+DPF R GP+++ CGINC*
Sbjct: 342 WVRVDPFTTRLAGPNIQTCGINC* 271
Score = 104 bits (221), Expect = 5e-022
Identities = 48/83 (57%), Positives = 55/83 (66%)
Frame = +2 / +2
Query: 242 QLMPHCLTSGPLVLTMKGSILTQSREKMEASSTDQMTTMVGVRFWRPMSPLRNG*RWTMT 421
QLMP GP + GS T S+EK+EA T Q T+VGVRF P+ PLR G + T+T
Sbjct: 275 QLMPQVWIFGPARRVVNGSTRTHSKEKIEARRTAQTMTIVGVRFCLPIRPLRKGYK*TIT 454
Query: 422 QKAKKSLPKSGPHDWYPLLMASE 490
QKAKKS PKSGP DW PLLMA E
Sbjct: 455 QKAKKSFPKSGPQDW*PLLMA*E 523
>gb|BQ465284.1|BQ465284 HU03C22r HU Hordeum vulgare subsp. vulgare cDNA clone HU03C22
5-PRIME, mRNA sequence
Length = 643
Score = 184 bits (396), Expect = 3e-046
Identities = 70/84 (83%), Positives = 78/84 (92%)
Frame = -2 / +2
Query: 489 SDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLL 310
S AIN+GYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIV++W+VLLASIFSLL
Sbjct: 248 SYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVIVWAVLLASIFSLL 427
Query: 309 WVRIDPFIVRTKGPDVRQCGINC* 238
WVR+DPF R GP+++ CGINC*
Sbjct: 428 WVRVDPFTTRLAGPNIQTCGINC* 499
Score = 104 bits (221), Expect = 5e-022
Identities = 48/83 (57%), Positives = 55/83 (66%)
Frame = +2 / -2
Query: 242 QLMPHCLTSGPLVLTMKGSILTQSREKMEASSTDQMTTMVGVRFWRPMSPLRNG*RWTMT 421
QLMP GP + GS T S+EK+EA T Q T+VGVRF P+ PLR G + T+T
Sbjct: 495 QLMPQVWIFGPARRVVNGSTRTHSKEKIEARRTAQTMTIVGVRFCLPIRPLRKGYK*TIT 316
Query: 422 QKAKKSLPKSGPHDWYPLLMASE 490
QKAKKS PKSGP DW PLLMA E
Sbjct: 315 QKAKKSFPKSGPQDW*PLLMA*E 247
>gb|BM370580.2|BM370580 EBro08_SQ004_K11_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ004_K11 5', mRNA sequence
Length = 606
Score = 184 bits (396), Expect = 3e-046
Identities = 70/84 (83%), Positives = 78/84 (92%)
Frame = -2 / +1
Query: 489 SDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLL 310
S AIN+GYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIV++W+VLLASIFSLL
Sbjct: 10 SYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVIVWAVLLASIFSLL 189
Query: 309 WVRIDPFIVRTKGPDVRQCGINC* 238
WVR+DPF R GP+++ CGINC*
Sbjct: 190 WVRVDPFTTRLAGPNIQTCGINC* 261
Score = 104 bits (221), Expect = 5e-022
Identities = 48/83 (57%), Positives = 55/83 (66%)
Frame = +2 / -2
Query: 242 QLMPHCLTSGPLVLTMKGSILTQSREKMEASSTDQMTTMVGVRFWRPMSPLRNG*RWTMT 421
QLMP GP + GS T S+EK+EA T Q T+VGVRF P+ PLR G + T+T
Sbjct: 257 QLMPQVWIFGPARRVVNGSTRTHSKEKIEARRTAQTMTIVGVRFCLPIRPLRKGYK*TIT 78
Query: 422 QKAKKSLPKSGPHDWYPLLMASE 490
QKAKKS PKSGP DW PLLMA E
Sbjct: 77 QKAKKSFPKSGPQDW*PLLMA*E 9
>gb|BQ766406.1|BQ766406 EBro08_SQ005_L20_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ005_L20 5', mRNA sequence
Length = 538
Score = 184 bits (396), Expect = 3e-046
Identities = 70/84 (83%), Positives = 78/84 (92%)
Frame = -2 / +2
Query: 489 SDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLL 310
S AIN+GYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIV++W+VLLASIFSLL
Sbjct: 38 SYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVIVWAVLLASIFSLL 217
Query: 309 WVRIDPFIVRTKGPDVRQCGINC* 238
WVR+DPF R GP+++ CGINC*
Sbjct: 218 WVRVDPFTTRLAGPNIQTCGINC* 289
Score = 104 bits (221), Expect = 5e-022
Identities = 48/83 (57%), Positives = 55/83 (66%)
Frame = +2 / -2
Query: 242 QLMPHCLTSGPLVLTMKGSILTQSREKMEASSTDQMTTMVGVRFWRPMSPLRNG*RWTMT 421
QLMP GP + GS T S+EK+EA T Q T+VGVRF P+ PLR G + T+T
Sbjct: 285 QLMPQVWIFGPARRVVNGSTRTHSKEKIEARRTAQTMTIVGVRFCLPIRPLRKGYK*TIT 106
Query: 422 QKAKKSLPKSGPHDWYPLLMASE 490
QKAKKS PKSGP DW PLLMA E
Sbjct: 105 QKAKKSFPKSGPQDW*PLLMA*E 37
>gb|BU990492.1|BU990492 HF25D10r HF Hordeum vulgare subsp. vulgare cDNA clone HF25D10
5-PRIME, mRNA sequence
Length = 621
Score = 184 bits (396), Expect = 3e-046
Identities = 70/84 (83%), Positives = 78/84 (92%)
Frame = -2 / +3
Query: 489 SDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLL 310
S AIN+GYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIV++W+VLLASIFSLL
Sbjct: 270 SYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVIVWAVLLASIFSLL 449
Query: 309 WVRIDPFIVRTKGPDVRQCGINC* 238
WVR+DPF R GP+++ CGINC*
Sbjct: 450 WVRVDPFTTRLAGPNIQTCGINC* 521
Score = 104 bits (221), Expect = 5e-022
Identities = 48/83 (57%), Positives = 55/83 (66%)
Frame = +2 / -3
Query: 242 QLMPHCLTSGPLVLTMKGSILTQSREKMEASSTDQMTTMVGVRFWRPMSPLRNG*RWTMT 421
QLMP GP + GS T S+EK+EA T Q T+VGVRF P+ PLR G + T+T
Sbjct: 517 QLMPQVWIFGPARRVVNGSTRTHSKEKIEARRTAQTMTIVGVRFCLPIRPLRKGYK*TIT 338
Query: 422 QKAKKSLPKSGPHDWYPLLMASE 490
QKAKKS PKSGP DW PLLMA E
Sbjct: 337 QKAKKSFPKSGPQDW*PLLMA*E 269
>gb|BM816139.1|BM816139 HC105G09_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC105G09_T3.ab1 similar to (AF200528) cellulose
synthase-4 [Zea mays],(AF200529) cellulose synthase-5
[Zea mays],(AF200533) cellulose synthase-9 [Zea
mays],cellulose synthase catalytic subunit [Arabidopsis
thaliana],unnamed protein product [Arabidopsis
thaliana],, mRNA sequence
Length = 916
Score = 183 bits (395), Expect = 5e-046
Identities = 69/83 (83%), Positives = 77/83 (92%)
Frame = -2 / +1
Query: 489 SDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLL 310
S AIN+GYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIV++W+VLLASIFSLL
Sbjct: 391 SYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVIVWAVLLASIFSLL 570
Query: 309 WVRIDPFIVRTKGPDVRQCGINC 241
WVR+DPF R GP+++ CGINC
Sbjct: 571 WVRVDPFTTRLAGPNIQTCGINC 639
Score = 104 bits (221), Expect = 5e-022
Identities = 48/83 (57%), Positives = 55/83 (66%)
Frame = +2 / -3
Query: 242 QLMPHCLTSGPLVLTMKGSILTQSREKMEASSTDQMTTMVGVRFWRPMSPLRNG*RWTMT 421
QLMP GP + GS T S+EK+EA T Q T+VGVRF P+ PLR G + T+T
Sbjct: 638 QLMPQVWIFGPARRVVNGSTRTHSKEKIEARRTAQTMTIVGVRFCLPIRPLRKGYK*TIT 459
Query: 422 QKAKKSLPKSGPHDWYPLLMASE 490
QKAKKS PKSGP DW PLLMA E
Sbjct: 458 QKAKKSFPKSGPQDW*PLLMA*E 390
>gb|BI776485.2|BI776485 EBpi05_SQ001_J01_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ001_J01 5', mRNA sequence
Length = 518
Score = 182 bits (393), Expect = 9e-046
Identities = 69/82 (84%), Positives = 76/82 (92%)
Frame = -2 / +1
Query: 489 SDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLL 310
S AIN+GYQSWGPLFGKLFFAFWVI+HLYPFLKGLMGRQNRTPTIVV+W++LLASIFSLL
Sbjct: 271 SYAINSGYQSWGPLFGKLFFAFWVIIHLYPFLKGLMGRQNRTPTIVVVWAILLASIFSLL 450
Query: 309 WVRIDPFIVRTKGPDVRQCGIN 244
WVRIDPF R GPD++ CGIN
Sbjct: 451 WVRIDPFTTRVTGPDIQMCGIN 516
Score = 123 bits (263), Expect = 8e-028
Identities = 53/83 (63%), Positives = 62/83 (74%)
Frame = +2 / -1
Query: 242 QLMPHCLTSGPLVLTMKGSILTQSREKMEASSTDQMTTMVGVRFWRPMSPLRNG*RWTMT 421
QLMPH SGP+ + GS+ T S+EKM+A Q TTMVGVRF RP+SPLRNG +W +T
Sbjct: 518 QLMPHIWISGPVTRVVNGSMRTHSKEKMDARRMAQTTTMVGVRFCRPISPLRNGYKWIIT 339
Query: 422 QKAKKSLPKSGPHDWYPLLMASE 490
QKAKKS PKSGPHD PLL+A E
Sbjct: 338 QKAKKSFPKSGPHD**PLLIA*E 270
>gb|BQ660846.1|BQ660846 HI05L24u HI Hordeum vulgare subsp. vulgare cDNA clone HI05L24
3-PRIME, mRNA sequence
Length = 539
Score = 182 bits (392), Expect = 1e-045
Identities = 69/84 (82%), Positives = 77/84 (91%)
Frame = -2 / -3
Query: 489 SDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLL 310
S AIN+GYQSWGPLFGKLFFAFWVIVHLYPFLKG MGRQNRTPTIV++W+VLLASIFSLL
Sbjct: 420 SYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGFMGRQNRTPTIVIVWAVLLASIFSLL 241
Query: 309 WVRIDPFIVRTKGPDVRQCGINC* 238
WVR+DPF R GP+++ CGINC*
Sbjct: 240 WVRVDPFTTRLAGPNIQTCGINC* 169
Score = 104 bits (222), Expect = 3e-022
Identities = 48/83 (57%), Positives = 55/83 (66%)
Frame = +2 / +2
Query: 242 QLMPHCLTSGPLVLTMKGSILTQSREKMEASSTDQMTTMVGVRFWRPMSPLRNG*RWTMT 421
QLMP GP + GS T S+EK+EA T Q T+VGVRF P+ PLR G + T+T
Sbjct: 173 QLMPQVWIFGPARRVVNGSTRTHSKEKIEARRTAQTMTIVGVRFCLPIKPLRKGYK*TIT 352
Query: 422 QKAKKSLPKSGPHDWYPLLMASE 490
QKAKKS PKSGP DW PLLMA E
Sbjct: 353 QKAKKSFPKSGPQDW*PLLMA*E 421
>gb|BI958555.1|BI958555 HVSMEn0015J16f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0015J16f, mRNA sequence
Length = 631
Score = 181 bits (389), Expect = 3e-045
Identities = 69/84 (82%), Positives = 77/84 (91%)
Frame = -2 / -1
Query: 489 SDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLL 310
SDA+NNGY SWGPLFGKLFF+ WVIVHLYPFLKGLMGRQNRTPTIVV+WSVLLASIFSL+
Sbjct: 463 SDAVNNGYGSWGPLFGKLFFSXWVIVHLYPFLKGLMGRQNRTPTIVVLWSVLLASIFSLV 284
Query: 309 WVRIDPFIVRTKGPDVRQCGINC* 238
WVRIDPFI + KGP ++ CG+ C*
Sbjct: 283 WVRIDPFIAKPKGPILKPCGVQC* 212
Score = 143 bits (307), Expect = 6e-034
Identities = 63/84 (75%), Positives = 65/84 (77%)
Frame = +2 / +3
Query: 239 QQLMPHCLTSGPLVLTMKGSILTQSREKMEASSTDQMTTMVGVRFWRPMSPLRNG*RWTM 418
Q PH L GPL L MKGSILT +REKMEAS TDQ TTMVGVRF PMSPLRNG*RWTM
Sbjct: 213 QHCTPHGLRMGPLGLAMKGSILTHTREKMEASRTDQSTTMVGVRFCLPMSPLRNG*RWTM 392
Query: 419 TQKAKKSLPKSGPHDWYPLLMASE 490
T K KKS PKSGP D YPLL AS+
Sbjct: 393 TXKEKKSFPKSGPQDPYPLLTASD 464
>gb|BG300950.1|BG300950 HVSMEb0019A22f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0019A22f, mRNA sequence
Length = 619
Score = 178 bits (383), Expect = 2e-044
Identities = 64/83 (77%), Positives = 78/83 (93%)
Frame = -2 / +1
Query: 489 SDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLL 310
S+AINNGY+SWGPLFGKLFFAFWVIVHLYPFLKGL+GRQNRTPTIV++WS+LLASI SLL
Sbjct: 58 SNAINNGYESWGPLFGKLFFAFWVIVHLYPFLKGLLGRQNRTPTIVIVWSILLASIISLL 237
Query: 309 WVRIDPFIVRTKGPDVRQCGINC 241
WVR++PF+ +T GP + +CG++C
Sbjct: 238 WVRVNPFLAKTDGPLLEECGLDC 306
>gb|BI949437.1|BI949437 HVSMEl0013O09f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0013O09f, mRNA sequence
Length = 938
Score = 178 bits (383), Expect = 2e-044
Identities = 64/83 (77%), Positives = 78/83 (93%)
Frame = -2 / +1
Query: 489 SDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLL 310
S+AINNGY+SWGPLFGKLFFAFWVIVHLYPFLKGL+GRQNRTPTIV++WS+LLASI SLL
Sbjct: 199 SNAINNGYESWGPLFGKLFFAFWVIVHLYPFLKGLLGRQNRTPTIVIVWSILLASIISLL 378
Query: 309 WVRIDPFIVRTKGPDVRQCGINC 241
WVR++PF+ +T GP + +CG++C
Sbjct: 379 WVRVNPFLAKTDGPLLEECGLDC 447
>gb|AV917031.1|AV917031 AV917031 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20i09 5', mRNA sequence
Length = 579
Score = 178 bits (383), Expect = 2e-044
Identities = 64/83 (77%), Positives = 78/83 (93%)
Frame = -2 / +2
Query: 489 SDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLL 310
S+AINNGY+SWGPLFGKLFFAFWVIVHLYPFLKGL+GRQNRTPTIV++WS+LLASI SLL
Sbjct: 167 SNAINNGYESWGPLFGKLFFAFWVIVHLYPFLKGLLGRQNRTPTIVIVWSILLASIISLL 346
Query: 309 WVRIDPFIVRTKGPDVRQCGINC 241
WVR++PF+ +T GP + +CG++C
Sbjct: 347 WVRVNPFLAKTDGPLLEECGLDC 415
>gb|BI955734.1|BI955734 HVSMEm0024E12f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0024E12f, mRNA sequence
Length = 707
Score = 160 bits (343), Expect(2) = 5e-041
Identities = 59/70 (84%), Positives = 68/70 (97%)
Frame = -2 / +2
Query: 489 SDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLL 310
S+AINNGY+SWGPLFGKLFFAFWVIVHLYPFLKGL+GRQNRTPTIV++WS+LLASI SLL
Sbjct: 221 SNAINNGYESWGPLFGKLFFAFWVIVHLYPFLKGLLGRQNRTPTIVIVWSILLASIISLL 400
Query: 309 WVRIDPFIVR 280
WVR++PF+ R
Sbjct: 401 WVRVNPFLAR 430
Score = 27.2 bits (53), Expect(2) = 5e-041
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = -2 / +1
Query: 297 DPFIVRTKGPDVRQCGINC 241
+PF +T GP + +CG++C
Sbjct: 412 EPFPRQTDGPLLEECGLDC 468
>gb|BG343763.2|BG343763 HVSMEg0006L01f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0006L01f, mRNA sequence
Length = 500
Score = 166 bits (358), Expect = 6e-041
Identities = 62/75 (82%), Positives = 69/75 (92%)
Frame = -2 / +3
Query: 462 SWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFIV 283
SWGPLFGKLFFAFWVI HLYPFLKGLMGRQNRTPTIV++W+VLLASIFSLLWVR+DPF
Sbjct: 3 SWGPLFGKLFFAFWVIAHLYPFLKGLMGRQNRTPTIVIVWAVLLASIFSLLWVRVDPFTT 182
Query: 282 RTKGPDVRQCGINC* 238
R GP+++ CGINC*
Sbjct: 183 RLAGPNIQTCGINC* 227
>gb|AV914933.1|AV914933 AV914933 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags9b06 5', mRNA sequence
Length = 654
Score = 166 bits (357), Expect = 8e-041
Identities = 64/74 (86%), Positives = 69/74 (93%)
Frame = -2 / +2
Query: 489 SDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLL 310
S AIN+GYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIV++W+VLLASIFSLL
Sbjct: 431 SYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVIVWAVLLASIFSLL 610
Query: 309 WVRIDPFIVRTKGP 268
WVR+DPF R GP
Sbjct: 611 WVRVDPFTTRLAGP 652
>gb|AV925215.1|AV925215 AV925215 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd22e04 5', mRNA sequence
Length = 656
Score = 163 bits (350), Expect = 8e-040
Identities = 63/73 (86%), Positives = 68/73 (93%)
Frame = -2 / +3
Query: 489 SDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLL 310
S AIN+GYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIV++W+VLLASIFSLL
Sbjct: 438 SYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVIVWAVLLASIFSLL 617
Query: 309 WVRIDPFIVRTKG 271
WVR+DPF R G
Sbjct: 618 WVRVDPFTTRLAG 656
>gb|CA017356.1|CA017356 HV12L21u HV Hordeum vulgare subsp. vulgare cDNA clone HV12L21
3-PRIME, mRNA sequence
Length = 515
Score = 161 bits (347), Expect = 2e-039
Identities = 61/73 (83%), Positives = 68/73 (93%)
Frame = -2 / -2
Query: 456 GPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFIVRT 277
GPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIV++W+VLLASIFSLLWVR+DPF R
Sbjct: 514 GPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVIVWAVLLASIFSLLWVRVDPFTTRL 335
Query: 276 KGPDVRQCGINC* 238
GP+++ CGINC*
Sbjct: 334 AGPNIQTCGINC* 296
>gb|CA025840.1|CA025840 HZ53E19r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ53E19
5-PRIME, mRNA sequence
Length = 456
Score = 160 bits (345), Expect = 4e-039
Identities = 59/71 (83%), Positives = 69/71 (97%)
Frame = -2 / +3
Query: 489 SDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLL 310
S+AINNGY+SWGPLFGKLFFAFWVIVHLYPFLKGL+GRQNRTPTIV++WS+LLASI SLL
Sbjct: 243 SNAINNGYESWGPLFGKLFFAFWVIVHLYPFLKGLLGRQNRTPTIVIVWSILLASIISLL 422
Query: 309 WVRIDPFIVRT 277
WVR++PF+ +T
Sbjct: 423 WVRVNPFLAKT 455
>gb|BQ469740.1|BQ469740 HZ01L16r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ01L16
5-PRIME, mRNA sequence
Length = 403
Score = 155 bits (333), Expect(2) = 1e-038
Identities = 59/72 (81%), Positives = 68/72 (94%)
Frame = -2 / +3
Query: 489 SDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLL 310
S AIN+GYQSWGPLFGKLFF+ WVI+HLYPFLKGLMG+QNRTPTIV++WS+LLASIFSLL
Sbjct: 75 SYAINSGYQSWGPLFGKLFFSIWVILHLYPFLKGLMGKQNRTPTIVIVWSILLASIFSLL 254
Query: 309 WVRIDPFIVRTK 274
WV+IDPFI T+
Sbjct: 255 WVKIDPFISDTQ 290
Score = 108 bits (230), Expect(2) = 8e-024
Identities = 48/69 (69%), Positives = 49/69 (71%)
Frame = +2 / -1
Query: 278 VLTMKGSILTQSREKMEASSTDQMTTMVGVRFWRPMSPLRNG*RWTMTQKAKKSLPKSGP 457
V MKGSI T REKMEA DQ TMVGVRF PM PLR G*RW +TQ KKS PKSGP
Sbjct: 286 VSDMKGSIFTHRREKMEARRMDQTMTMVGVRFCFPMRPLRKG*RWRITQIEKKSFPKSGP 107
Query: 458 HDWYPLLMA 484
DW PLLMA
Sbjct: 106 QDW*PLLMA 80
Score = 23.1 bits (44), Expect(2) = 1e-038
Identities = 7/9 (77%), Positives = 9/9 (100%)
Frame = -2 / +3
Query: 258 QCGINC*AA 232
QCG+NC*+A
Sbjct: 309 QCGVNC*SA 335
Score = 20.8 bits (39), Expect(2) = 8e-024
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +2 / -1
Query: 233 AAQQLMPHC 259
A QQL PHC
Sbjct: 334 ADQQLTPHC 308
>gb|BU971759.1|BU971759 HB19J12r BC Hordeum vulgare subsp. vulgare cDNA clone HB19J12
5-PRIME, mRNA sequence
Length = 649
Score = 157 bits (338), Expect = 3e-038
Identities = 58/68 (85%), Positives = 67/68 (98%)
Frame = -2 / +1
Query: 489 SDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLL 310
S+AINNGY+SWGPLFGKLFFAFWVIVHLYPFLKGL+GRQNRTPTIV++WS+LLASI SLL
Sbjct: 445 SNAINNGYESWGPLFGKLFFAFWVIVHLYPFLKGLLGRQNRTPTIVIVWSILLASIISLL 624
Query: 309 WVRIDPFI 286
WVR++PF+
Sbjct: 625 WVRVNPFL 648
>gb|BG368285.2|BG368285 HVSMEi0017H01f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0017H01f, mRNA sequence
Length = 755
Score = 155 bits (333), Expect(2) = 4e-038
Identities = 59/72 (81%), Positives = 68/72 (94%)
Frame = -2 / +1
Query: 489 SDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLL 310
S AIN+GYQSWGPLFGKLFF+ WVI+HLYPFLKGLMG+QNRTPTIV++WS+LLASIFSLL
Sbjct: 40 SYAINSGYQSWGPLFGKLFFSIWVILHLYPFLKGLMGKQNRTPTIVIVWSILLASIFSLL 219
Query: 309 WVRIDPFIVRTK 274
WV+IDPFI T+
Sbjct: 220 WVKIDPFISDTQ 255
Score = 110 bits (235), Expect = 5e-024
Identities = 49/69 (71%), Positives = 50/69 (72%)
Frame = +2 / -1
Query: 278 VLTMKGSILTQSREKMEASSTDQMTTMVGVRFWRPMSPLRNG*RWTMTQKAKKSLPKSGP 457
V MKGSI TQ REKMEA DQ TMVGVRF PM PLR G*RW +TQ KKS PKSGP
Sbjct: 251 VSEMKGSIFTQRREKMEARRIDQTMTMVGVRFCFPMRPLRKG*RWRITQIEKKSFPKSGP 72
Query: 458 HDWYPLLMA 484
DW PLLMA
Sbjct: 71 QDW*PLLMA 45
Score = 22.1 bits (42), Expect(2) = 4e-038
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = -2 / +1
Query: 258 QCGINC*AAYHGS 220
QCG+NC*+ + S
Sbjct: 274 QCGVNC*SDHRRS 312
>gb|CB875240.1|CB875240 HX07L05w HX Hordeum vulgare subsp. vulgare cDNA clone HX07L05
3-PRIME, mRNA sequence
Length = 654
Score = 155 bits (333), Expect(2) = 4e-038
Identities = 59/72 (81%), Positives = 68/72 (94%)
Frame = -2 / -2
Query: 489 SDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLL 310
S AIN+GYQSWGPLFGKLFF+ WVI+HLYPFLKGLMG+QNRTPTIV++WS+LLASIFSLL
Sbjct: 557 SYAINSGYQSWGPLFGKLFFSIWVILHLYPFLKGLMGKQNRTPTIVIVWSILLASIFSLL 378
Query: 309 WVRIDPFIVRTK 274
WV+IDPFI T+
Sbjct: 377 WVKIDPFISDTQ 342
Score = 110 bits (235), Expect = 5e-024
Identities = 49/69 (71%), Positives = 50/69 (72%)
Frame = +2 / +1
Query: 278 VLTMKGSILTQSREKMEASSTDQMTTMVGVRFWRPMSPLRNG*RWTMTQKAKKSLPKSGP 457
V MKGSI TQ REKMEA DQ TMVGVRF PM PLR G*RW +TQ KKS PKSGP
Sbjct: 346 VSEMKGSIFTQRREKMEARRIDQTMTMVGVRFCFPMRPLRKG*RWRITQIEKKSFPKSGP 525
Query: 458 HDWYPLLMA 484
DW PLLMA
Sbjct: 526 QDW*PLLMA 552
Score = 22.1 bits (42), Expect(2) = 4e-038
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = -2 / -2
Query: 258 QCGINC*AAYHGS 220
QCG+NC*+ + S
Sbjct: 323 QCGVNC*SDHRRS 285
>gb|CB875201.1|CB875201 HX07J05w HX Hordeum vulgare subsp. vulgare cDNA clone HX07J05
3-PRIME, mRNA sequence
Length = 652
Score = 155 bits (333), Expect(2) = 4e-038
Identities = 59/72 (81%), Positives = 68/72 (94%)
Frame = -2 / -1
Query: 489 SDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLL 310
S AIN+GYQSWGPLFGKLFF+ WVI+HLYPFLKGLMG+QNRTPTIV++WS+LLASIFSLL
Sbjct: 556 SYAINSGYQSWGPLFGKLFFSIWVILHLYPFLKGLMGKQNRTPTIVIVWSILLASIFSLL 377
Query: 309 WVRIDPFIVRTK 274
WV+IDPFI T+
Sbjct: 376 WVKIDPFISDTQ 341
Score = 110 bits (235), Expect = 5e-024
Identities = 49/69 (71%), Positives = 50/69 (72%)
Frame = +2 / +3
Query: 278 VLTMKGSILTQSREKMEASSTDQMTTMVGVRFWRPMSPLRNG*RWTMTQKAKKSLPKSGP 457
V MKGSI TQ REKMEA DQ TMVGVRF PM PLR G*RW +TQ KKS PKSGP
Sbjct: 345 VSEMKGSIFTQRREKMEARRIDQTMTMVGVRFCFPMRPLRKG*RWRITQIEKKSFPKSGP 524
Query: 458 HDWYPLLMA 484
DW PLLMA
Sbjct: 525 QDW*PLLMA 551
Score = 22.1 bits (42), Expect(2) = 4e-038
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = -2 / -1
Query: 258 QCGINC*AAYHGS 220
QCG+NC*+ + S
Sbjct: 322 QCGVNC*SDHRRS 284
>gb|BJ460872.1|BJ460872 BJ460872 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak42j03 3', mRNA sequence
Length = 590
Score = 155 bits (333), Expect(2) = 4e-038
Identities = 59/72 (81%), Positives = 68/72 (94%)
Frame = -2 / -1
Query: 489 SDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLL 310
S AIN+GYQSWGPLFGKLFF+ WVI+HLYPFLKGLMG+QNRTPTIV++WS+LLASIFSLL
Sbjct: 530 SYAINSGYQSWGPLFGKLFFSIWVILHLYPFLKGLMGKQNRTPTIVIVWSILLASIFSLL 351
Query: 309 WVRIDPFIVRTK 274
WV+IDPFI T+
Sbjct: 350 WVKIDPFISDTQ 315
Score = 110 bits (235), Expect = 5e-024
Identities = 49/69 (71%), Positives = 50/69 (72%)
Frame = +2 / +1
Query: 278 VLTMKGSILTQSREKMEASSTDQMTTMVGVRFWRPMSPLRNG*RWTMTQKAKKSLPKSGP 457
V MKGSI TQ REKMEA DQ TMVGVRF PM PLR G*RW +TQ KKS PKSGP
Sbjct: 319 VSEMKGSIFTQRREKMEARRIDQTMTMVGVRFCFPMRPLRKG*RWRITQIEKKSFPKSGP 498
Query: 458 HDWYPLLMA 484
DW PLLMA
Sbjct: 499 QDW*PLLMA 525
Score = 22.1 bits (42), Expect(2) = 4e-038
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = -2 / -1
Query: 258 QCGINC*AAYHGS 220
QCG+NC*+ + S
Sbjct: 296 QCGVNC*SDHRRS 258
>gb|BJ447699.1|BJ447699 BJ447699 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak16p07 5', mRNA sequence
Length = 577
Score = 155 bits (333), Expect(2) = 4e-038
Identities = 59/72 (81%), Positives = 68/72 (94%)
Frame = -2 / +1
Query: 489 SDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLL 310
S AIN+GYQSWGPLFGKLFF+ WVI+HLYPFLKGLMG+QNRTPTIV++WS+LLASIFSLL
Sbjct: 13 SYAINSGYQSWGPLFGKLFFSIWVILHLYPFLKGLMGKQNRTPTIVIVWSILLASIFSLL 192
Query: 309 WVRIDPFIVRTK 274
WV+IDPFI T+
Sbjct: 193 WVKIDPFISDTQ 228
Score = 110 bits (235), Expect = 5e-024
Identities = 49/69 (71%), Positives = 50/69 (72%)
Frame = +2 / -3
Query: 278 VLTMKGSILTQSREKMEASSTDQMTTMVGVRFWRPMSPLRNG*RWTMTQKAKKSLPKSGP 457
V MKGSI TQ REKMEA DQ TMVGVRF PM PLR G*RW +TQ KKS PKSGP
Sbjct: 224 VSEMKGSIFTQRREKMEARRIDQTMTMVGVRFCFPMRPLRKG*RWRITQIEKKSFPKSGP 45
Query: 458 HDWYPLLMA 484
DW PLLMA
Sbjct: 44 QDW*PLLMA 18
Score = 22.1 bits (42), Expect(2) = 4e-038
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = -2 / +1
Query: 258 QCGINC*AAYHGS 220
QCG+NC*+ + S
Sbjct: 247 QCGVNC*SDHRRS 285
>gb|BQ660756.1|BQ660756 HI05F03u HI Hordeum vulgare subsp. vulgare cDNA clone HI05F03
3-PRIME, mRNA sequence
Length = 539
Score = 155 bits (333), Expect(2) = 4e-038
Identities = 59/72 (81%), Positives = 68/72 (94%)
Frame = -2 / -1
Query: 489 SDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLL 310
S AIN+GYQSWGPLFGKLFF+ WVI+HLYPFLKGLMG+QNRTPTIV++WS+LLASIFSLL
Sbjct: 377 SYAINSGYQSWGPLFGKLFFSIWVILHLYPFLKGLMGKQNRTPTIVIVWSILLASIFSLL 198
Query: 309 WVRIDPFIVRTK 274
WV+IDPFI T+
Sbjct: 197 WVKIDPFISDTQ 162
Score = 110 bits (235), Expect = 5e-024
Identities = 49/69 (71%), Positives = 50/69 (72%)
Frame = +2 / +1
Query: 278 VLTMKGSILTQSREKMEASSTDQMTTMVGVRFWRPMSPLRNG*RWTMTQKAKKSLPKSGP 457
V MKGSI TQ REKMEA DQ TMVGVRF PM PLR G*RW +TQ KKS PKSGP
Sbjct: 166 VSEMKGSIFTQRREKMEARRIDQTMTMVGVRFCFPMRPLRKG*RWRITQIEKKSFPKSGP 345
Query: 458 HDWYPLLMA 484
DW PLLMA
Sbjct: 346 QDW*PLLMA 372
Score = 22.1 bits (42), Expect(2) = 4e-038
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = -2 / -1
Query: 258 QCGINC*AAYHGS 220
QCG+NC*+ + S
Sbjct: 143 QCGVNC*SDHRRS 105
>gb|BJ455449.1|BJ455449 BJ455449 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak16p07 3', mRNA sequence
Length = 528
Score = 155 bits (333), Expect(2) = 4e-038
Identities = 59/72 (81%), Positives = 68/72 (94%)
Frame = -2 / -1
Query: 489 SDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLL 310
S AIN+GYQSWGPLFGKLFF+ WVI+HLYPFLKGLMG+QNRTPTIV++WS+LLASIFSLL
Sbjct: 516 SYAINSGYQSWGPLFGKLFFSIWVILHLYPFLKGLMGKQNRTPTIVIVWSILLASIFSLL 337
Query: 309 WVRIDPFIVRTK 274
WV+IDPFI T+
Sbjct: 336 WVKIDPFISDTQ 301
Score = 110 bits (235), Expect = 5e-024
Identities = 49/69 (71%), Positives = 50/69 (72%)
Frame = +2 / +2
Query: 278 VLTMKGSILTQSREKMEASSTDQMTTMVGVRFWRPMSPLRNG*RWTMTQKAKKSLPKSGP 457
V MKGSI TQ REKMEA DQ TMVGVRF PM PLR G*RW +TQ KKS PKSGP
Sbjct: 305 VSEMKGSIFTQRREKMEARRIDQTMTMVGVRFCFPMRPLRKG*RWRITQIEKKSFPKSGP 484
Query: 458 HDWYPLLMA 484
DW PLLMA
Sbjct: 485 QDW*PLLMA 511
Score = 22.1 bits (42), Expect(2) = 4e-038
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = -2 / -1
Query: 258 QCGINC*AAYHGS 220
QCG+NC*+ + S
Sbjct: 282 QCGVNC*SDHRRS 244
>gb|AV929091.1|AV929091 AV929091 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd20p06 3', mRNA sequence
Length = 509
Score = 155 bits (333), Expect(2) = 4e-038
Identities = 59/72 (81%), Positives = 68/72 (94%)
Frame = -2 / -2
Query: 489 SDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLL 310
S AIN+GYQSWGPLFGKLFF+ WVI+HLYPFLKGLMG+QNRTPTIV++WS+LLASIFSLL
Sbjct: 475 SYAINSGYQSWGPLFGKLFFSIWVILHLYPFLKGLMGKQNRTPTIVIVWSILLASIFSLL 296
Query: 309 WVRIDPFIVRTK 274
WV+IDPFI T+
Sbjct: 295 WVKIDPFISDTQ 260
Score = 110 bits (235), Expect = 5e-024
Identities = 49/69 (71%), Positives = 50/69 (72%)
Frame = +2 / +3
Query: 278 VLTMKGSILTQSREKMEASSTDQMTTMVGVRFWRPMSPLRNG*RWTMTQKAKKSLPKSGP 457
V MKGSI TQ REKMEA DQ TMVGVRF PM PLR G*RW +TQ KKS PKSGP
Sbjct: 264 VSEMKGSIFTQRREKMEARRIDQTMTMVGVRFCFPMRPLRKG*RWRITQIEKKSFPKSGP 443
Query: 458 HDWYPLLMA 484
DW PLLMA
Sbjct: 444 QDW*PLLMA 470
Score = 22.1 bits (42), Expect(2) = 4e-038
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = -2 / -2
Query: 258 QCGINC*AAYHGS 220
QCG+NC*+ + S
Sbjct: 241 QCGVNC*SDHRRS 203
>gb|BM816138.1|BM816138 HC109B12_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC109B12_T3.ab1 similar to (AF200528) cellulose
synthase-4 [Zea mays],(AF200529) cellulose synthase-5
[Zea mays],(AF200533) cellulose synthase-9 [Zea
mays],cellulose synthase catalytic subunit [Arabidopsis
thaliana],unnamed protein product [Arabidopsis
thaliana],, mRNA sequence
Length = 880
Score = 142 bits (305), Expect(2) = 7e-038
Identities = 55/61 (90%), Positives = 59/61 (96%)
Frame = -2 / +2
Query: 489 SDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLL 310
S AIN+GYQSWGPLFGKLFFAFWVIVHLYPFLKGLMG QNRTPTIV++W+VLLASIFSLL
Sbjct: 629 SYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGXQNRTPTIVIVWAVLLASIFSLL 808
Query: 309 W 307
W
Sbjct: 809 W 811
Score = 34.1 bits (68), Expect(2) = 7e-038
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -2 / +3
Query: 297 DPFIVRTKGPDVRQCGINC 241
DPF R GP+ + CGINC
Sbjct: 822 DPFTTRLAGPNXQTCGINC 878
>gb|AL499724.1|AL499724 AL499724 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK03B21r 3', mRNA sequence
Length = 619
Score = 155 bits (334), Expect = 1e-037
Identities = 57/68 (83%), Positives = 67/68 (98%)
Frame = -2 / -3
Query: 489 SDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLL 310
SDA+N+GY+SWGPLFGK+FF+ WVI+HLYPFLKGLMGRQNRTPTIV++WSVLLAS+FSLL
Sbjct: 452 SDALNSGYESWGPLFGKVFFSMWVIMHLYPFLKGLMGRQNRTPTIVILWSVLLASVFSLL 273
Query: 309 WVRIDPFI 286
WV+IDPFI
Sbjct: 272 WVKIDPFI 249
Score = 105 bits (225), Expect = 1e-022
Identities = 48/68 (70%), Positives = 51/68 (75%)
Frame = +2 / +1
Query: 287 MKGSILTQSREKMEASSTDQMTTMVGVRFWRPMSPLRNG*RWTMTQKAKKSLPKSGPHDW 466
+KGSILTQ REK EAS TDQ TMVGVRF RPM PLRNG R +T K +LPKSGPHD
Sbjct: 250 IKGSILTQRREKTEASRTDQSMTMVGVRFCRPMRPLRNGYRCIITHMEKNTLPKSGPHDS 429
Query: 467 YPLLMASE 490
PLL ASE
Sbjct: 430 *PLLSASE 453
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 162,722,634
Number of Sequences: 312970
Number of extensions: 2227593
Number of successful extensions: 39106
Number of sequences better than 1.0e-020: 97
length of database: 58,378,179
effective HSP length: 50
effective length of database: 42,729,679
effective search space used: 5298480196
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)