TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBN10e11.xg.2.2
(581 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV932668.1|AV932668 AV932668 K. Sato unpublished cDNA li... 127 7e-039
gb|BJ472039.1|BJ472039 BJ472039 K. Sato unpublished cDNA li... 127 9e-039
gb|AV932909.1|AV932909 AV932909 K. Sato unpublished cDNA li... 127 1e-038
gb|CA028274.1|CA028274 HZ61I02r HZ Hordeum vulgare subsp. v... 127 1e-038
gb|AV932284.1|AV932284 AV932284 K. Sato unpublished cDNA li... 127 2e-037
gb|CA012169.1|CA012169 HT04K11r HT Hordeum vulgare subsp. v... 127 2e-037
gb|BU984788.1|BU984788 HF05A10r HF Hordeum vulgare subsp. v... 127 2e-037
gb|BG300712.2|BG300712 HVSMEb0018B21f Hordeum vulgare seedl... 127 2e-037
gb|AL507698.1|AL507698 AL507698 Hordeum vulgare Barke devel... 127 2e-037
gb|CK122610.1|CK122610 BES1824104j23 BES1824 Hordeum vulgar... 127 3e-037
gb|BE215659.3|BE215659 HV_CEb0007L14f Hordeum vulgare seedl... 118 1e-034
gb|AV917169.1|AV917169 AV917169 K. Sato unpublished cDNA li... 93 1e-028
gb|BU990099.1|BU990099 HF24B10r HF Hordeum vulgare subsp. v... 120 5e-028
gb|BQ468511.1|BQ468511 HM01H13T HM Hordeum vulgare subsp. v... 77 3e-022
>gb|AV932668.1|AV932668 AV932668 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal1j14 5', mRNA sequence
Length = 580
Score = 127 bits (273), Expect(3) = 7e-039
Identities = 51/66 (77%), Positives = 59/66 (89%)
Frame = +3 / +2
Query: 216 RYPGETSREAIKRHQHFMALQLGLKKGMKVLDVGCGIGGPLIEIARFSSTSITGLTNNDY 395
R+ GE+ RE+IKRH+HF+ALQL LK GMKVLDVGCGIGGPL EIARFSSTS+TGL NNDY
Sbjct: 164 RWSGESLRESIKRHEHFLALQLELKPGMKVLDVGCGIGGPLREIARFSSTSVTGLNNNDY 343
Query: 396 HVSRGK 413
++RGK
Sbjct: 344 QITRGK 361
Score = 100 bits (214), Expect(2) = 5e-025
Identities = 42/70 (60%), Positives = 52/70 (74%)
Frame = -2 / -2
Query: 424 KMQTLPLETW*SLLVNPVIEVELNLAISIKGPPIPHPTSRTFIPFLSPNCSAIKCWCRLM 245
++ + PL W*SLL NPV EVELNLAIS+ GPPIP PTS+TFIP + +C A KC CRL+
Sbjct: 372 RLSSFPLVIW*SLLFNPVTEVELNLAISLNGPPIPQPTSKTFIPGFNSSCRARKCSCRLI 193
Query: 244 ASREVSPGYL 215
S + SP +L
Sbjct: 192 LSLKDSPLHL 163
Score = 48.7 bits (100), Expect(3) = 7e-039
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +3 / +2
Query: 3 YDLVTGFYEYGWGDSFHFA 59
YDL T FYEYGWG+SFHFA
Sbjct: 104 YDLATSFYEYGWGESFHFA 160
Score = 34.1 bits (68), Expect(2) = 5e-025
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = -2 / -2
Query: 58 AKWNESPHPYS*KPVTRS* 2
AKW +SP PYS*K V RS*
Sbjct: 159 AKWKDSPQPYS*KLVARS* 103
Score = 23.1 bits (44), Expect(3) = 7e-039
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = +3 / +2
Query: 504 SAXLSEXCCXLXGDXXNXXXADNTFD 581
S LS C + D +DNTFD
Sbjct: 374 SVGLSGTCDFVKADFMKMPFSDNTFD 451
>gb|BJ472039.1|BJ472039 BJ472039 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal31k11 5', mRNA sequence
Length = 628
Score = 127 bits (273), Expect(3) = 9e-039
Identities = 51/66 (77%), Positives = 59/66 (89%)
Frame = +3 / +1
Query: 216 RYPGETSREAIKRHQHFMALQLGLKKGMKVLDVGCGIGGPLIEIARFSSTSITGLTNNDY 395
R+ GE+ RE+IKRH+HF+ALQL LK GMKVLDVGCGIGGPL EIARFSSTS+TGL NNDY
Sbjct: 217 RWSGESLRESIKRHEHFLALQLELKPGMKVLDVGCGIGGPLREIARFSSTSVTGLNNNDY 396
Query: 396 HVSRGK 413
++RGK
Sbjct: 397 QITRGK 414
Score = 100 bits (214), Expect(2) = 6e-025
Identities = 42/70 (60%), Positives = 52/70 (74%)
Frame = -2 / -3
Query: 424 KMQTLPLETW*SLLVNPVIEVELNLAISIKGPPIPHPTSRTFIPFLSPNCSAIKCWCRLM 245
++ + PL W*SLL NPV EVELNLAIS+ GPPIP PTS+TFIP + +C A KC CRL+
Sbjct: 425 RLSSFPLVIW*SLLFNPVTEVELNLAISLNGPPIPQPTSKTFIPGFNSSCRARKCSCRLI 246
Query: 244 ASREVSPGYL 215
S + SP +L
Sbjct: 245 LSLKDSPLHL 216
Score = 48.7 bits (100), Expect(3) = 9e-039
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +3 / +1
Query: 3 YDLVTGFYEYGWGDSFHFA 59
YDL T FYEYGWG+SFHFA
Sbjct: 157 YDLATSFYEYGWGESFHFA 213
Score = 34.1 bits (68), Expect(2) = 6e-025
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = -2 / -3
Query: 58 AKWNESPHPYS*KPVTRS* 2
AKW +SP PYS*K V RS*
Sbjct: 212 AKWKDSPQPYS*KLVARS* 156
Score = 23.1 bits (44), Expect(3) = 9e-039
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = +3 / +1
Query: 504 SAXLSEXCCXLXGDXXNXXXADNTFD 581
S LS C + D +DNTFD
Sbjct: 427 SVGLSGTCDFVKADFMKMPFSDNTFD 504
>gb|AV932909.1|AV932909 AV932909 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal4j24 5', mRNA sequence
Length = 677
Score = 127 bits (273), Expect(3) = 1e-038
Identities = 51/66 (77%), Positives = 59/66 (89%)
Frame = +3 / +3
Query: 216 RYPGETSREAIKRHQHFMALQLGLKKGMKVLDVGCGIGGPLIEIARFSSTSITGLTNNDY 395
R+ GE+ RE+IKRH+HF+ALQL LK GMKVLDVGCGIGGPL EIARFSSTS+TGL NNDY
Sbjct: 243 RWSGESLRESIKRHEHFLALQLELKPGMKVLDVGCGIGGPLREIARFSSTSVTGLNNNDY 422
Query: 396 HVSRGK 413
++RGK
Sbjct: 423 QITRGK 440
Score = 100 bits (214), Expect(2) = 6e-025
Identities = 42/70 (60%), Positives = 52/70 (74%)
Frame = -2 / -2
Query: 424 KMQTLPLETW*SLLVNPVIEVELNLAISIKGPPIPHPTSRTFIPFLSPNCSAIKCWCRLM 245
++ + PL W*SLL NPV EVELNLAIS+ GPPIP PTS+TFIP + +C A KC CRL+
Sbjct: 451 RLSSFPLVIW*SLLFNPVTEVELNLAISLNGPPIPQPTSKTFIPGFNSSCRARKCSCRLI 272
Query: 244 ASREVSPGYL 215
S + SP +L
Sbjct: 271 LSLKDSPLHL 242
Score = 48.7 bits (100), Expect(3) = 1e-038
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +3 / +3
Query: 3 YDLVTGFYEYGWGDSFHFA 59
YDL T FYEYGWG+SFHFA
Sbjct: 183 YDLATSFYEYGWGESFHFA 239
Score = 34.1 bits (68), Expect(2) = 6e-025
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = -2 / -2
Query: 58 AKWNESPHPYS*KPVTRS* 2
AKW +SP PYS*K V RS*
Sbjct: 238 AKWKDSPQPYS*KLVARS* 182
Score = 23.1 bits (44), Expect(3) = 1e-038
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = +3 / +3
Query: 504 SAXLSEXCCXLXGDXXNXXXADNTFD 581
S LS C + D +DNTFD
Sbjct: 453 SVGLSGTCDFVKADFMKMPFSDNTFD 530
>gb|CA028274.1|CA028274 HZ61I02r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ61I02
5-PRIME, mRNA sequence
Length = 678
Score = 127 bits (273), Expect(3) = 1e-038
Identities = 51/66 (77%), Positives = 59/66 (89%)
Frame = +3 / +1
Query: 216 RYPGETSREAIKRHQHFMALQLGLKKGMKVLDVGCGIGGPLIEIARFSSTSITGLTNNDY 395
R+ GE+ RE+IKRH+HF+ALQL LK GMKVLDVGCGIGGPL EIARFSSTS+TGL NNDY
Sbjct: 343 RWSGESLRESIKRHEHFLALQLELKPGMKVLDVGCGIGGPLREIARFSSTSVTGLNNNDY 522
Query: 396 HVSRGK 413
++RGK
Sbjct: 523 QITRGK 540
Score = 100 bits (214), Expect(2) = 6e-025
Identities = 42/70 (60%), Positives = 52/70 (74%)
Frame = -2 / -2
Query: 424 KMQTLPLETW*SLLVNPVIEVELNLAISIKGPPIPHPTSRTFIPFLSPNCSAIKCWCRLM 245
++ + PL W*SLL NPV EVELNLAIS+ GPPIP PTS+TFIP + +C A KC CRL+
Sbjct: 551 RLSSFPLVIW*SLLFNPVTEVELNLAISLNGPPIPQPTSKTFIPGFNSSCRARKCSCRLI 372
Query: 244 ASREVSPGYL 215
S + SP +L
Sbjct: 371 LSLKDSPLHL 342
Score = 48.7 bits (100), Expect(3) = 1e-038
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +3 / +1
Query: 3 YDLVTGFYEYGWGDSFHFA 59
YDL T FYEYGWG+SFHFA
Sbjct: 283 YDLATSFYEYGWGESFHFA 339
Score = 34.1 bits (68), Expect(2) = 6e-025
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = -2 / -2
Query: 58 AKWNESPHPYS*KPVTRS* 2
AKW +SP PYS*K V RS*
Sbjct: 338 AKWKDSPQPYS*KLVARS* 282
Score = 23.1 bits (44), Expect(3) = 1e-038
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = +3 / +1
Query: 504 SAXLSEXCCXLXGDXXNXXXADNTFD 581
S LS C + D +DNTFD
Sbjct: 553 SVGLSGTCDFVKADFMKMPFSDNTFD 630
>gb|AV932284.1|AV932284 AV932284 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal2p18 5', mRNA sequence
Length = 469
Score = 127 bits (273), Expect(2) = 2e-037
Identities = 51/66 (77%), Positives = 59/66 (89%)
Frame = +3 / +2
Query: 216 RYPGETSREAIKRHQHFMALQLGLKKGMKVLDVGCGIGGPLIEIARFSSTSITGLTNNDY 395
R+ GE+ RE+IKRH+HF+ALQL LK GMKVLDVGCGIGGPL EIARFSSTS+TGL NNDY
Sbjct: 233 RWSGESLRESIKRHEHFLALQLELKPGMKVLDVGCGIGGPLREIARFSSTSVTGLNNNDY 412
Query: 396 HVSRGK 413
++RGK
Sbjct: 413 QITRGK 430
Score = 100 bits (214), Expect(2) = 4e-025
Identities = 42/70 (60%), Positives = 52/70 (74%)
Frame = -2 / -2
Query: 424 KMQTLPLETW*SLLVNPVIEVELNLAISIKGPPIPHPTSRTFIPFLSPNCSAIKCWCRLM 245
++ + PL W*SLL NPV EVELNLAIS+ GPPIP PTS+TFIP + +C A KC CRL+
Sbjct: 441 RLSSFPLVIW*SLLFNPVTEVELNLAISLNGPPIPQPTSKTFIPGFNSSCRARKCSCRLI 262
Query: 244 ASREVSPGYL 215
S + SP +L
Sbjct: 261 LSLKDSPLHL 232
Score = 48.7 bits (100), Expect(2) = 2e-037
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +3 / +2
Query: 3 YDLVTGFYEYGWGDSFHFA 59
YDL T FYEYGWG+SFHFA
Sbjct: 173 YDLATSFYEYGWGESFHFA 229
Score = 34.1 bits (68), Expect(2) = 4e-025
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = -2 / -2
Query: 58 AKWNESPHPYS*KPVTRS* 2
AKW +SP PYS*K V RS*
Sbjct: 228 AKWKDSPQPYS*KLVARS* 172
>gb|CA012169.1|CA012169 HT04K11r HT Hordeum vulgare subsp. vulgare cDNA clone HT04K11
5-PRIME, mRNA sequence
Length = 507
Score = 127 bits (273), Expect(2) = 2e-037
Identities = 51/66 (77%), Positives = 59/66 (89%)
Frame = +3 / +3
Query: 216 RYPGETSREAIKRHQHFMALQLGLKKGMKVLDVGCGIGGPLIEIARFSSTSITGLTNNDY 395
R+ GE+ RE+IKRH+HF+ALQL LK GMKVLDVGCGIGGPL EIARFSSTS+TGL NNDY
Sbjct: 273 RWSGESLRESIKRHEHFLALQLELKPGMKVLDVGCGIGGPLREIARFSSTSVTGLNNNDY 452
Query: 396 HVSRGK 413
++RGK
Sbjct: 453 QITRGK 470
Score = 100 bits (214), Expect(2) = 4e-025
Identities = 42/70 (60%), Positives = 52/70 (74%)
Frame = -2 / -3
Query: 424 KMQTLPLETW*SLLVNPVIEVELNLAISIKGPPIPHPTSRTFIPFLSPNCSAIKCWCRLM 245
++ + PL W*SLL NPV EVELNLAIS+ GPPIP PTS+TFIP + +C A KC CRL+
Sbjct: 481 RLSSFPLVIW*SLLFNPVTEVELNLAISLNGPPIPQPTSKTFIPGFNSSCRARKCSCRLI 302
Query: 244 ASREVSPGYL 215
S + SP +L
Sbjct: 301 LSLKDSPLHL 272
Score = 48.7 bits (100), Expect(2) = 2e-037
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +3 / +3
Query: 3 YDLVTGFYEYGWGDSFHFA 59
YDL T FYEYGWG+SFHFA
Sbjct: 213 YDLATSFYEYGWGESFHFA 269
Score = 34.1 bits (68), Expect(2) = 4e-025
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = -2 / -3
Query: 58 AKWNESPHPYS*KPVTRS* 2
AKW +SP PYS*K V RS*
Sbjct: 268 AKWKDSPQPYS*KLVARS* 212
>gb|BU984788.1|BU984788 HF05A10r HF Hordeum vulgare subsp. vulgare cDNA clone HF05A10
5-PRIME, mRNA sequence
Length = 567
Score = 127 bits (273), Expect(2) = 2e-037
Identities = 51/66 (77%), Positives = 59/66 (89%)
Frame = +3 / +3
Query: 216 RYPGETSREAIKRHQHFMALQLGLKKGMKVLDVGCGIGGPLIEIARFSSTSITGLTNNDY 395
R+ GE+ RE+IKRH+HF+ALQL LK GMKVLDVGCGIGGPL EIARFSSTS+TGL NNDY
Sbjct: 333 RWSGESLRESIKRHEHFLALQLELKPGMKVLDVGCGIGGPLREIARFSSTSVTGLNNNDY 512
Query: 396 HVSRGK 413
++RGK
Sbjct: 513 QITRGK 530
Score = 100 bits (214), Expect(2) = 5e-025
Identities = 42/70 (60%), Positives = 52/70 (74%)
Frame = -2 / -3
Query: 424 KMQTLPLETW*SLLVNPVIEVELNLAISIKGPPIPHPTSRTFIPFLSPNCSAIKCWCRLM 245
++ + PL W*SLL NPV EVELNLAIS+ GPPIP PTS+TFIP + +C A KC CRL+
Sbjct: 541 RLSSFPLVIW*SLLFNPVTEVELNLAISLNGPPIPQPTSKTFIPGFNSSCRARKCSCRLI 362
Query: 244 ASREVSPGYL 215
S + SP +L
Sbjct: 361 LSLKDSPLHL 332
Score = 48.7 bits (100), Expect(2) = 2e-037
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +3 / +3
Query: 3 YDLVTGFYEYGWGDSFHFA 59
YDL T FYEYGWG+SFHFA
Sbjct: 273 YDLATSFYEYGWGESFHFA 329
Score = 34.1 bits (68), Expect(2) = 5e-025
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = -2 / -3
Query: 58 AKWNESPHPYS*KPVTRS* 2
AKW +SP PYS*K V RS*
Sbjct: 328 AKWKDSPQPYS*KLVARS* 272
>gb|BG300712.2|BG300712 HVSMEb0018B21f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0018B21f, mRNA sequence
Length = 601
Score = 127 bits (273), Expect(2) = 2e-037
Identities = 51/66 (77%), Positives = 59/66 (89%)
Frame = +3 / +1
Query: 216 RYPGETSREAIKRHQHFMALQLGLKKGMKVLDVGCGIGGPLIEIARFSSTSITGLTNNDY 395
R+ GE+ RE+IKRH+HF+ALQL LK GMKVLDVGCGIGGPL EIARFSSTS+TGL NNDY
Sbjct: 325 RWSGESLRESIKRHEHFLALQLELKPGMKVLDVGCGIGGPLREIARFSSTSVTGLNNNDY 504
Query: 396 HVSRGK 413
++RGK
Sbjct: 505 QITRGK 522
Score = 100 bits (214), Expect(2) = 5e-025
Identities = 42/70 (60%), Positives = 52/70 (74%)
Frame = -2 / -3
Query: 424 KMQTLPLETW*SLLVNPVIEVELNLAISIKGPPIPHPTSRTFIPFLSPNCSAIKCWCRLM 245
++ + PL W*SLL NPV EVELNLAIS+ GPPIP PTS+TFIP + +C A KC CRL+
Sbjct: 533 RLSSFPLVIW*SLLFNPVTEVELNLAISLNGPPIPQPTSKTFIPGFNSSCRARKCSCRLI 354
Query: 244 ASREVSPGYL 215
S + SP +L
Sbjct: 353 LSLKDSPLHL 324
Score = 48.7 bits (100), Expect(2) = 2e-037
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +3 / +1
Query: 3 YDLVTGFYEYGWGDSFHFA 59
YDL T FYEYGWG+SFHFA
Sbjct: 265 YDLATSFYEYGWGESFHFA 321
Score = 34.1 bits (68), Expect(2) = 5e-025
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = -2 / -3
Query: 58 AKWNESPHPYS*KPVTRS* 2
AKW +SP PYS*K V RS*
Sbjct: 320 AKWKDSPQPYS*KLVARS* 264
>gb|AL507698.1|AL507698 AL507698 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY06J16V 5',
mRNA sequence
Length = 700
Score = 127 bits (273), Expect(2) = 2e-037
Identities = 51/66 (77%), Positives = 59/66 (89%)
Frame = +3 / +2
Query: 216 RYPGETSREAIKRHQHFMALQLGLKKGMKVLDVGCGIGGPLIEIARFSSTSITGLTNNDY 395
R+ GE+ RE+IKRH+HF+ALQL LK GMKVLDVGCGIGGPL EIARFSSTS+TGL NNDY
Sbjct: 323 RWSGESLRESIKRHEHFLALQLELKPGMKVLDVGCGIGGPLREIARFSSTSVTGLNNNDY 502
Query: 396 HVSRGK 413
++RGK
Sbjct: 503 QITRGK 520
Score = 100 bits (214), Expect(2) = 6e-025
Identities = 42/70 (60%), Positives = 52/70 (74%)
Frame = -2 / -2
Query: 424 KMQTLPLETW*SLLVNPVIEVELNLAISIKGPPIPHPTSRTFIPFLSPNCSAIKCWCRLM 245
++ + PL W*SLL NPV EVELNLAIS+ GPPIP PTS+TFIP + +C A KC CRL+
Sbjct: 531 RLSSFPLVIW*SLLFNPVTEVELNLAISLNGPPIPQPTSKTFIPGFNSSCRARKCSCRLI 352
Query: 244 ASREVSPGYL 215
S + SP +L
Sbjct: 351 LSLKDSPLHL 322
Score = 48.7 bits (100), Expect(2) = 2e-037
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +3 / +2
Query: 3 YDLVTGFYEYGWGDSFHFA 59
YDL T FYEYGWG+SFHFA
Sbjct: 263 YDLATSFYEYGWGESFHFA 319
Score = 34.1 bits (68), Expect(2) = 6e-025
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = -2 / -2
Query: 58 AKWNESPHPYS*KPVTRS* 2
AKW +SP PYS*K V RS*
Sbjct: 318 AKWKDSPQPYS*KLVARS* 262
>gb|CK122610.1|CK122610 BES1824104j23 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010J234 5-PRIME, mRNA sequence
Length = 730
Score = 127 bits (273), Expect(2) = 3e-037
Identities = 51/66 (77%), Positives = 59/66 (89%)
Frame = +3 / +1
Query: 216 RYPGETSREAIKRHQHFMALQLGLKKGMKVLDVGCGIGGPLIEIARFSSTSITGLTNNDY 395
R+ GE+ RE+IKRH+HF+ALQL LK GMKVLDVGCGIGGPL EIARFSSTS+TGL NNDY
Sbjct: 340 RWSGESLRESIKRHEHFLALQLELKPGMKVLDVGCGIGGPLREIARFSSTSVTGLNNNDY 519
Query: 396 HVSRGK 413
++RGK
Sbjct: 520 QITRGK 537
Score = 100 bits (214), Expect(2) = 6e-025
Identities = 42/70 (60%), Positives = 52/70 (74%)
Frame = -2 / -3
Query: 424 KMQTLPLETW*SLLVNPVIEVELNLAISIKGPPIPHPTSRTFIPFLSPNCSAIKCWCRLM 245
++ + PL W*SLL NPV EVELNLAIS+ GPPIP PTS+TFIP + +C A KC CRL+
Sbjct: 548 RLSSFPLVIW*SLLFNPVTEVELNLAISLNGPPIPQPTSKTFIPGFNSSCRARKCSCRLI 369
Query: 244 ASREVSPGYL 215
S + SP +L
Sbjct: 368 LSLKDSPLHL 339
Score = 48.7 bits (100), Expect(2) = 3e-037
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +3 / +1
Query: 3 YDLVTGFYEYGWGDSFHFA 59
YDL T FYEYGWG+SFHFA
Sbjct: 280 YDLATSFYEYGWGESFHFA 336
Score = 34.1 bits (68), Expect(2) = 6e-025
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = -2 / -3
Query: 58 AKWNESPHPYS*KPVTRS* 2
AKW +SP PYS*K V RS*
Sbjct: 335 AKWKDSPQPYS*KLVARS* 279
>gb|BE215659.3|BE215659 HV_CEb0007L14f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0007L14f, mRNA sequence
Length = 523
Score = 118 bits (253), Expect(2) = 1e-034
Identities = 47/66 (71%), Positives = 55/66 (83%)
Frame = +3 / +1
Query: 216 RYPGETSREAIKRHQHFMALQLGLKKGMKVLDVGCGIGGPLIEIARFSSTSITGLTNNDY 395
R+ GE+ RE+IKRH+HF+ALQL LK GMKVLDVGCGIGGPL E SSTS+TGL NNDY
Sbjct: 313 RWSGESLRESIKRHEHFLALQLELKPGMKVLDVGCGIGGPLREXCEISSTSVTGLNNNDY 492
Query: 396 HVSRGK 413
++RGK
Sbjct: 493 QITRGK 510
Score = 89.5 bits (189), Expect(2) = 1e-021
Identities = 38/70 (54%), Positives = 48/70 (68%)
Frame = -2 / -3
Query: 424 KMQTLPLETW*SLLVNPVIEVELNLAISIKGPPIPHPTSRTFIPFLSPNCSAIKCWCRLM 245
++ + PL W*SLL NPV EVEL S+ GPPIP PTS+TFIP + +C A KC CRL+
Sbjct: 521 RLSSFPLVIW*SLLFNPVTEVELISQXSLNGPPIPQPTSKTFIPGFNSSCRARKCSCRLI 342
Query: 244 ASREVSPGYL 215
S + SP +L
Sbjct: 341 LSLKDSPLHL 312
Score = 48.7 bits (100), Expect(2) = 1e-034
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +3 / +1
Query: 3 YDLVTGFYEYGWGDSFHFA 59
YDL T FYEYGWG+SFHFA
Sbjct: 253 YDLATSFYEYGWGESFHFA 309
Score = 34.1 bits (68), Expect(2) = 1e-021
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = -2 / -3
Query: 58 AKWNESPHPYS*KPVTRS* 2
AKW +SP PYS*K V RS*
Sbjct: 308 AKWKDSPQPYS*KLVARS* 252
>gb|AV917169.1|AV917169 AV917169 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags8c03 5', mRNA sequence
Length = 503
Score = 92.7 bits (196), Expect(3) = 1e-028
Identities = 38/49 (77%), Positives = 43/49 (87%)
Frame = +3 / +1
Query: 216 RYPGETSREAIKRHQHFMALQLGLKKGMKVLDVGCGIGGPLIEIARFSS 362
R+ GE+ RE+IKRH+HF+ALQL LK GMKVLDVGCGIGGPL EIARF S
Sbjct: 121 RWSGESLRESIKRHEHFLALQLELKPGMKVLDVGCGIGGPLREIARFRS 267
Score = 48.7 bits (100), Expect(3) = 1e-028
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +3 / +1
Query: 3 YDLVTGFYEYGWGDSFHFA 59
YDL T FYEYGWG+SFHFA
Sbjct: 61 YDLATSFYEYGWGESFHFA 117
Score = 23.1 bits (44), Expect(3) = 1e-028
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = +3 / +3
Query: 504 SAXLSEXCCXLXGDXXNXXXADNTFD 581
S LS C + D +DNTFD
Sbjct: 276 SVGLSGTCDFVKADFMKMPFSDNTFD 353
>gb|BU990099.1|BU990099 HF24B10r HF Hordeum vulgare subsp. vulgare cDNA clone HF24B10
5-PRIME, mRNA sequence
Length = 592
Score = 120 bits (257), Expect(2) = 5e-028
Identities = 48/59 (81%), Positives = 54/59 (91%)
Frame = +3 / +2
Query: 237 REAIKRHQHFMALQLGLKKGMKVLDVGCGIGGPLIEIARFSSTSITGLTNNDYHVSRGK 413
RE+IKRH+HF+ALQL LK GMKVLDVGCGIGGPL EIARFSSTS+TGL NNDY ++RGK
Sbjct: 2 RESIKRHEHFLALQLELKPGMKVLDVGCGIGGPLREIARFSSTSVTGLNNNDYQITRGK 178
Score = 23.1 bits (44), Expect(2) = 5e-028
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = +3 / +2
Query: 504 SAXLSEXCCXLXGDXXNXXXADNTFD 581
S LS C + D +DNTFD
Sbjct: 191 SVGLSGTCDFVKADFMKMPFSDNTFD 268
>gb|BQ468511.1|BQ468511 HM01H13T HM Hordeum vulgare subsp. vulgare cDNA clone HM01H13
5-PRIME, mRNA sequence
Length = 525
Score = 76.7 bits (161), Expect(2) = 3e-022
Identities = 30/39 (76%), Positives = 35/39 (89%)
Frame = +3 / +2
Query: 216 RYPGETSREAIKRHQHFMALQLGLKKGMKVLDVGCGIGG 332
R+ GE+ RE+IKRH+HF+ALQL LK GMKVLDVGCGIGG
Sbjct: 407 RWSGESLRESIKRHEHFLALQLELKPGMKVLDVGCGIGG 523
Score = 48.7 bits (100), Expect(2) = 3e-022
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +3 / +2
Query: 3 YDLVTGFYEYGWGDSFHFA 59
YDL T FYEYGWG+SFHFA
Sbjct: 347 YDLATSFYEYGWGESFHFA 403
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 241,782,370
Number of Sequences: 312970
Number of extensions: 3553740
Number of successful extensions: 50408
Number of sequences better than 1.0e-020: 19
length of database: 58,378,179
effective HSP length: 51
effective length of database: 42,416,709
effective search space used: 6023172678
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)