TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBJ4h04.xg.2.2
(494 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ753427.1|BQ753427 EBan01_SQ004_D21_R anther, yellow st... 230 4e-060
gb|BM442464.2|BM442464 EBan01_SQ003_E04_R anther, yellow st... 229 9e-060
gb|BM442006.2|BM442006 EBan01_SQ001_K04_R anther, yellow st... 156 4e-053
gb|BQ753289.1|BQ753289 EBan01_SQ001_D10_R anther, yellow st... 156 4e-053
gb|BQ764354.1|BQ764354 EBan01_SQ005_I18_R anther, yellow st... 156 4e-053
gb|CK123865.1|CK123865 BES1824105n21 BES1824 Hordeum vulgar... 93 2e-031
gb|CK125568.1|CK125568 BES1824109b06 BES1824 Hordeum vulgar... 93 2e-031
gb|AV926936.1|AV926936 AV926936 K. Sato unpublished cDNA li... 93 2e-031
gb|BQ765063.1|BQ765063 EBca01_SQ005_N18_R carpel, pre-anthe... 93 2e-031
gb|AL505296.1|AL505296 AL505296 Hordeum vulgare Barke roots... 93 2e-031
gb|CA032315.1|CA032315 HX12K14r HX Hordeum vulgare subsp. v... 93 2e-031
gb|BM377129.2|BM377129 EBem05_SQ004_D11_R embryo, 14 DPA, n... 93 2e-031
gb|CA025095.1|CA025095 HZ51D05r HZ Hordeum vulgare subsp. v... 93 2e-031
gb|BU996702.1|BU996702 HM14H14r HM Hordeum vulgare subsp. v... 93 2e-031
gb|BG300145.1|BG300145 HVSMEb0010G24f Hordeum vulgare seedl... 93 2e-031
gb|BM369644.2|BM369644 EBem07_SQ004_D10_R embryo, 28 DPA, n... 93 2e-031
gb|BQ469637.1|BQ469637 HZ01G16r HZ Hordeum vulgare subsp. v... 93 2e-031
gb|BM376958.2|BM376958 EBem05_SQ003_L10_R embryo, 14 DPA, n... 102 6e-031
gb|BI950605.1|BI950605 HVSMEl0021J24f Hordeum vulgare spike... 90 8e-031
gb|AW982205.2|AW982205 HVSMEg0002E10f Hordeum vulgare pre-a... 102 8e-031
gb|AL506237.1|AL506237 AL506237 Hordeum vulgare Barke devel... 102 8e-031
gb|BQ464047.1|BQ464047 HF01D07T HF Hordeum vulgare subsp. v... 102 8e-031
gb|BQ460388.1|BQ460388 HA09M17r HA Hordeum vulgare subsp. v... 102 8e-031
gb|BJ463425.1|BJ463425 BJ463425 K. Sato unpublished cDNA li... 102 8e-031
gb|BU988629.1|BU988629 HF18D11r HF Hordeum vulgare subsp. v... 102 8e-031
gb|BU997945.1|BU997945 HI09I01r HI Hordeum vulgare subsp. v... 102 8e-031
gb|BQ471999.1|BQ471999 HV04C01r HV Hordeum vulgare subsp. v... 102 8e-031
gb|BM373914.2|BM373914 EBma03_SQ003_B17_R maternal, 8 DPA, ... 102 1e-030
gb|BJ463541.1|BJ463541 BJ463541 K. Sato unpublished cDNA li... 90 1e-030
gb|BM442216.2|BM442216 EBan01_SQ002_I23_R anther, yellow st... 131 3e-030
gb|BM376791.2|BM376791 EBem05_SQ003_E02_R embryo, 14 DPA, n... 100 4e-030
gb|AL505692.1|AL505692 AL505692 Hordeum vulgare Barke roots... 93 8e-030
gb|BU999728.1|BU999728 HI15I03r HI Hordeum vulgare subsp. v... 93 2e-029
gb|BU977218.1|BU977218 HA11A17r HA Hordeum vulgare subsp. v... 93 4e-027
gb|CA028260.1|CA028260 HZ61H10r HZ Hordeum vulgare subsp. v... 93 4e-027
gb|BQ764615.1|BQ764615 EBca01_SQ004_K11_R carpel, pre-anthe... 73 8e-027
gb|BM374546.2|BM374546 EBpi03_SQ003_O19_R pistil, 4 DPA, no... 93 1e-026
gb|BM372397.2|BM372397 EBro03_SQ004_N12_R root, 3 week, wat... 70 1e-024
gb|BU982393.1|BU982393 HA26G16r HA Hordeum vulgare subsp. v... 93 4e-024
gb|CA017403.1|CA017403 HV05B16r HV Hordeum vulgare subsp. v... 93 1e-023
gb|BU988248.1|BU988248 HF17B16r HF Hordeum vulgare subsp. v... 102 3e-023
gb|AV919448.1|AV919448 AV919448 K. Sato unpublished cDNA li... 73 8e-022
gb|AV918472.1|AV918472 AV918472 K. Sato unpublished cDNA li... 73 8e-022
gb|BJ476245.1|BJ476245 BJ476245 K. Sato unpublished cDNA li... 62 1e-021
gb|BE216049.2|BE216049 HV_CEb0009E03f Hordeum vulgare seedl... 62 1e-021
>gb|BQ753427.1|BQ753427 EBan01_SQ004_D21_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ004_D21 5', mRNA sequence
Length = 633
Score = 230 bits (497), Expect = 4e-060
Identities = 95/141 (67%), Positives = 99/141 (70%)
Frame = +2 / +2
Query: 71 MSFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXXLYCKT 250
MSFTG QDKC+ C+KT HFIDLLT IYHKTC HCKG SMCSYSSMD LYCKT
Sbjct: 68 MSFTGTQDKCSACEKTVHFIDLLTADGVIYHKTCFKCSHCKGILSMCSYSSMDGVLYCKT 247
Query: 251 HFEQLFKXTGSFSKNFTPXXXSSDKXXLTRAPSKLSSAFSGTXDKXAACQKTXYPXXXLT 430
HFEQLFK TGSFSK FTP S DK LTRAPSKLS+AFSGT DK AAC KT YP +T
Sbjct: 248 HFEQLFKETGSFSKKFTPGNKSGDKSELTRAPSKLSAAFSGTQDKCAACTKTVYPLEKMT 427
Query: 431 LXXXXYHKXXXKCSXXXXXLT 493
L YHK KCS LT
Sbjct: 428 LEGDAYHKSCFKCSHGGCILT 490
Score = 155 bits (333), Expect = 2e-037
Identities = 77/142 (54%), Positives = 78/142 (54%)
Frame = -3 / -1
Query: 492 VRXXXXCEHXXXLLW*XXXSRVXXXXGYXVFWHAAXLSXVPENAXXXXXXXXXXXXXXXD 313
VR EH LLW SRV GY VF AA LS VPE A D
Sbjct: 489 VRMQPPWEHLKQLLWYASPSRVIFSSGYTVFVQAAHLS*VPEKAADSLLGALVSSLLSPD 310
Query: 312 XXXGVKFLEKLPVXLKSCSKWVLQYXXXSMEE*LHIEXXPLQWXXLXHVLW*MXXXXVRR 133
GV F EKLPV LKSCSK VLQ SMEE*LHIE PLQW L VLW*M VRR
Sbjct: 309 LLPGVNFFEKLPVSLKSCSKCVLQ*RTPSMEE*LHIERIPLQWLHLKQVLW*MTPSAVRR 130
Query: 132 SMKWXVLSXXVHLSCXPVKDMV 67
SMKW V S HLSC PVKDM+
Sbjct: 129 SMKWTVFSHAEHLSCVPVKDML 64
Score = 147 bits (315), Expect = 5e-035
Identities = 69/141 (48%), Positives = 81/141 (57%)
Frame = +1 / +1
Query: 70 HVFHRXAGQVHXXRQDXPLHRPPHXXXXHLP*DMXQXXPXXXXXXXXXXXXHGRXXVLQD 249
HVFHR AGQV R+D PLHRPPH HLP D+ Q P HGR +LQD
Sbjct: 67 HVFHRHAGQVLGVRKDGPLHRPPHGRRRHLPQDLLQMQPLQRDPLDVQLFFHGRCPLLQD 246
Query: 250 PLRAALQXDRELLQELHAXXXVIRQGXTDKGPKQAVVCIFWYPX*VRSMPENXVPAXXXN 429
LRAALQ DRELL+E+H + RQ TDKGPKQA+ C+ Y *V S+ EN V +
Sbjct: 247 ALRAALQGDRELLKEVHTG*QIWRQE*TDKGPKQAIRCLLRYSG*VCSLHENSVSTRKDD 426
Query: 430 SGXXXLPQEXXXVLAXXXXPD 492
SG +PQE VL P+
Sbjct: 427 SGGRCIPQELLQVLPRGLHPN 489
Score = 68.0 bits (142), Expect(2) = 1e-022
Identities = 32/54 (59%), Positives = 34/54 (62%)
Frame = -1 / -2
Query: 227 PWRSSCTSXXXLCSGXX*XMSYGRWXXXX*GGR*SGXSCRXXCTCPAXR*KTWC 66
PW++SCTS LCSG * S GR *GGR*SG S R TCPA R*KT C
Sbjct: 224 PWKNSCTSRGSLCSGCI*SRSCGR*RRRP*GGR*SGPSFRTPSTCPACR*KTCC 63
Score = 57.4 bits (119), Expect(2) = 1e-022
Identities = 26/58 (44%), Positives = 28/58 (48%)
Frame = -1 / -2
Query: 494 WSGXXXXASTXXXSCGXXXXPELXXXAGTXFSGMLRTYXGYQKMQTTACLGPLSVXPC 321
W G ST SCG PE T FS L TY Y++ Q ACLGPLSV C
Sbjct: 491 WLGCSPRGST*SSSCGMHRPPESSFRVDTLFSCRLHTYPEYRRRQRIACLGPLSVHSC 318
>gb|BM442464.2|BM442464 EBan01_SQ003_E04_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ003_E04 5', mRNA sequence
Length = 507
Score = 229 bits (494), Expect = 9e-060
Identities = 93/134 (69%), Positives = 97/134 (72%)
Frame = +2 / +1
Query: 71 MSFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXXLYCKT 250
MSFTG QDKC+ C+KT HFIDLLT IYHKTC HCKG SMCSYSSMD LYCKT
Sbjct: 70 MSFTGTQDKCSACEKTVHFIDLLTADGVIYHKTCFKCSHCKGILSMCSYSSMDGVLYCKT 249
Query: 251 HFEQLFKXTGSFSKNFTPXXXSSDKXXLTRAPSKLSSAFSGTXDKXAACQKTXYPXXXLT 430
HFEQLFK TGSFSK FTP S DK LTRAPSKLS+AFSGT DK AAC KT YP +T
Sbjct: 250 HFEQLFKETGSFSKKFTPGNKSGDKSELTRAPSKLSAAFSGTQDKCAACTKTVYPLEKMT 429
Query: 431 LXXXXYHKXXXKCS 472
L YHK KCS
Sbjct: 430 LEGDAYHKSCFKCS 471
Score = 155 bits (332), Expect = 2e-037
Identities = 75/135 (55%), Positives = 76/135 (56%)
Frame = -3 / -2
Query: 471 EHXXXLLW*XXXSRVXXXXGYXVFWHAAXLSXVPENAXXXXXXXXXXXXXXXDXXXGVKF 292
EH LLW SRV GY VF AA LS VPE A D GV F
Sbjct: 470 EHLKQLLWYASPSRVIFSSGYTVFVQAAHLS*VPEKAADSLLGALVSSLLSPDLLPGVNF 291
Query: 291 LEKLPVXLKSCSKWVLQYXXXSMEE*LHIEXXPLQWXXLXHVLW*MXXXXVRRSMKWXVL 112
EKLPV LKSCSK VLQ SMEE*LHIE PLQW L VLW*M VRRSMKW V
Sbjct: 290 FEKLPVSLKSCSKCVLQ*RTPSMEE*LHIERIPLQWLHLKQVLW*MTPSAVRRSMKWTVF 111
Query: 111 SXXVHLSCXPVKDMV 67
S HLSC PVKDM+
Sbjct: 110 SHAEHLSCVPVKDML 66
Score = 146 bits (314), Expect = 6e-035
Identities = 69/140 (49%), Positives = 80/140 (57%)
Frame = +1 / +3
Query: 70 HVFHRXAGQVHXXRQDXPLHRPPHXXXXHLP*DMXQXXPXXXXXXXXXXXXHGRXXVLQD 249
HVFHR AGQV R+D PLHRPPH HLP D+ Q P HGR +LQD
Sbjct: 69 HVFHRHAGQVLGVRKDGPLHRPPHGRRRHLPQDLLQMQPLQRDPLDVQLFFHGRCPLLQD 248
Query: 250 PLRAALQXDRELLQELHAXXXVIRQGXTDKGPKQAVVCIFWYPX*VRSMPENXVPAXXXN 429
LRAALQ DRELL+E+H + RQ TDKGPKQA+ C+ Y *V S+ EN V +
Sbjct: 249 ALRAALQGDRELLKEVHTG*QIWRQE*TDKGPKQAIRCLLRYSR*VCSLHENSVSTRKDD 428
Query: 430 SGXXXLPQEXXXVLAXXXXP 489
SG +PQE VL P
Sbjct: 429 SGGRCIPQELLQVLPRGLHP 488
Score = 68.0 bits (142), Expect(2) = 1e-021
Identities = 32/54 (59%), Positives = 34/54 (62%)
Frame = -1 / -3
Query: 227 PWRSSCTSXXXLCSGXX*XMSYGRWXXXX*GGR*SGXSCRXXCTCPAXR*KTWC 66
PW++SCTS LCSG * S GR *GGR*SG S R TCPA R*KT C
Sbjct: 226 PWKNSCTSRGSLCSGCI*SRSCGR*RRRP*GGR*SGPSFRTPSTCPACR*KTCC 65
Score = 53.8 bits (111), Expect(2) = 1e-021
Identities = 25/56 (44%), Positives = 27/56 (48%)
Frame = -1 / -3
Query: 488 GXXXXASTXXXSCGXXXXPELXXXAGTXFSGMLRTYXGYQKMQTTACLGPLSVXPC 321
G ST SCG PE T FS L TY Y++ Q ACLGPLSV C
Sbjct: 487 GCSPRGST*SSSCGMHRPPESSFRVDTLFSCRLHTYLEYRRRQRIACLGPLSVHSC 320
>gb|BM442006.2|BM442006 EBan01_SQ001_K04_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ001_K04 5', mRNA sequence
Length = 647
Score = 156 bits (336), Expect(2) = 4e-053
Identities = 61/86 (70%), Positives = 64/86 (74%)
Frame = +2 / +3
Query: 68 TMSFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXXLYCK 247
TMSFTG QDKC CDKT HFIDLLT YHKTC HCKG SMC+YSSMD LYCK
Sbjct: 108 TMSFTGTQDKCKTCDKTVHFIDLLTADGVSYHKTCFKCSHCKGTLSMCNYSSMDGVLYCK 287
Query: 248 THFEQLFKXTGSFSKNFTPXXXSSDK 325
THFEQLFK TGSFSK FTP S++K
Sbjct: 288 THFEQLFKETGSFSKKFTPGGKSAEK 365
Score = 133 bits (285), Expect(2) = 3e-037
Identities = 57/79 (72%), Positives = 58/79 (73%)
Frame = -3 / -2
Query: 303 GVKFLEKLPVXLKSCSKWVLQYXXXSMEE*LHIEXXPLQWXXLXHVLW*MXXXXVRRSMK 124
GV F EKLPV LKSCSKWVLQ SMEE*LHIE PLQW L HVLW* VRRSMK
Sbjct: 343 GVNFFEKLPVSLKSCSKWVLQ*RTPSMEE*LHIERVPLQWLHLKHVLW*ETPSAVRRSMK 164
Query: 123 WXVLSXXVHLSCXPVKDMV 67
W VLS +HLSC PVKDMV
Sbjct: 163 WTVLSHVLHLSCVPVKDMV 107
Score = 94.1 bits (199), Expect(2) = 3e-025
Identities = 43/91 (47%), Positives = 48/91 (52%)
Frame = +1 / +2
Query: 31 CVRSCSHRQASGHHVFHRXAGQVHXXRQDXPLHRPPHXXXXHLP*DMXQXXPXXXXXXXX 210
CV + HHVFHR AGQV RQD PLHRPPH LP DM Q P
Sbjct: 71 CVLIARPITGADHHVFHRHAGQVQDVRQDRPLHRPPHRRRRLLPQDMLQVQPLQGDPLDV 250
Query: 211 XXXXHGRXXVLQDPLRAALQXDRELLQELHA 303
HG +LQDP R LQ D ELL+E++A
Sbjct: 251 QLLFHGWCPLLQDPFRTTLQGDGELLKEIYA 343
Score = 83.1 bits (175), Expect(2) = 5e-021
Identities = 35/53 (66%), Positives = 36/53 (67%)
Frame = -1 / -3
Query: 227 PWRSSCTSXXXLCSGXX*XMSYGRWXXXX*GGR*SGXSCRXXCTCPAXR*KTW 69
PW+SSCTS CSG * MS GR *GGR*SG SCR CTCPA R*KTW
Sbjct: 267 PWKSSCTSRGSPCSGCT*SMSCGRRRRRR*GGR*SGRSCRTSCTCPACR*KTW 109
Score = 70.7 bits (148), Expect(2) = 4e-053
Identities = 31/52 (59%), Positives = 34/52 (65%)
Frame = +2 / +3
Query: 338 RAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKCSXXXXXLT 493
+APSK+SSAFSGT DK AACQKT YP L+L YHK KCS LT
Sbjct: 375 KAPSKMSSAFSGTQDKCAACQKTVYPLEKLSLEGECYHKGCFKCSHGGCILT 530
Score = 40.9 bits (83), Expect(2) = 3e-037
Identities = 21/44 (47%), Positives = 22/44 (50%)
Frame = -3 / -2
Query: 492 VRXXXXCEHXXXLLW*XXXSRVXXXXGYXVFWHAAXLSXVPENA 361
VR CEH LW* S+ GY VF AA LS VPE A
Sbjct: 529 VRMQPPCEHLKQPLW*HSPSKDSFSNGYTVF*QAAHLS*VPEKA 398
Score = 40.0 bits (81), Expect(2) = 3e-025
Identities = 21/59 (35%), Positives = 26/59 (44%)
Frame = +1 / +2
Query: 316 IRQGXTDKGPKQAVVCIFWYPX*VRSMPENXVPAXXXNSGXXXLPQEXXXVLAXXXXPD 492
IR K KQ V+C+ W *+ + +N VP G LPQ VLA PD
Sbjct: 353 IRGEERGKSSKQDVICLLWNSG*MCGLSKNRVPIGEAILGGRMLPQGLLQVLAWWLHPD 529
Score = 36.8 bits (74), Expect(2) = 5e-021
Identities = 17/49 (34%), Positives = 21/49 (42%)
Frame = -1 / -3
Query: 491 SGXXXXASTXXXSCGXXXXPELXXXAGTXFSGMLRTYXGYQKMQTTACL 345
SG AST CG P + GT F Y +Q+ Q T+CL
Sbjct: 528 SGCSHHAST*SSPCGSILPPRIASPMGTRFFDRPHIYPEFQRRQMTSCL 382
>gb|BQ753289.1|BQ753289 EBan01_SQ001_D10_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ001_D10 5', mRNA sequence
Length = 634
Score = 156 bits (336), Expect(2) = 4e-053
Identities = 61/86 (70%), Positives = 64/86 (74%)
Frame = +2 / +3
Query: 68 TMSFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXXLYCK 247
TMSFTG QDKC CDKT HFIDLLT YHKTC HCKG SMC+YSSMD LYCK
Sbjct: 114 TMSFTGTQDKCKTCDKTVHFIDLLTADGVSYHKTCFKCSHCKGTLSMCNYSSMDGVLYCK 293
Query: 248 THFEQLFKXTGSFSKNFTPXXXSSDK 325
THFEQLFK TGSFSK FTP S++K
Sbjct: 294 THFEQLFKETGSFSKKFTPGGKSAEK 371
Score = 133 bits (285), Expect(2) = 3e-037
Identities = 57/79 (72%), Positives = 58/79 (73%)
Frame = -3 / -1
Query: 303 GVKFLEKLPVXLKSCSKWVLQYXXXSMEE*LHIEXXPLQWXXLXHVLW*MXXXXVRRSMK 124
GV F EKLPV LKSCSKWVLQ SMEE*LHIE PLQW L HVLW* VRRSMK
Sbjct: 349 GVNFFEKLPVSLKSCSKWVLQ*RTPSMEE*LHIERVPLQWLHLKHVLW*ETPSAVRRSMK 170
Query: 123 WXVLSXXVHLSCXPVKDMV 67
W VLS +HLSC PVKDMV
Sbjct: 169 WTVLSHVLHLSCVPVKDMV 113
Score = 94.1 bits (199), Expect(2) = 3e-025
Identities = 43/91 (47%), Positives = 48/91 (52%)
Frame = +1 / +2
Query: 31 CVRSCSHRQASGHHVFHRXAGQVHXXRQDXPLHRPPHXXXXHLP*DMXQXXPXXXXXXXX 210
CV + HHVFHR AGQV RQD PLHRPPH LP DM Q P
Sbjct: 77 CVLIARPITGADHHVFHRHAGQVQDVRQDRPLHRPPHRRRRLLPQDMLQVQPLQGDPLDV 256
Query: 211 XXXXHGRXXVLQDPLRAALQXDRELLQELHA 303
HG +LQDP R LQ D ELL+E++A
Sbjct: 257 QLLFHGWCPLLQDPFRTTLQGDGELLKEIYA 349
Score = 83.1 bits (175), Expect(2) = 5e-021
Identities = 35/53 (66%), Positives = 36/53 (67%)
Frame = -1 / -2
Query: 227 PWRSSCTSXXXLCSGXX*XMSYGRWXXXX*GGR*SGXSCRXXCTCPAXR*KTW 69
PW+SSCTS CSG * MS GR *GGR*SG SCR CTCPA R*KTW
Sbjct: 273 PWKSSCTSRGSPCSGCT*SMSCGRRRRRR*GGR*SGRSCRTSCTCPACR*KTW 115
Score = 70.7 bits (148), Expect(2) = 4e-053
Identities = 31/52 (59%), Positives = 34/52 (65%)
Frame = +2 / +3
Query: 338 RAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKCSXXXXXLT 493
+APSK+SSAFSGT DK AACQKT YP L+L YHK KCS LT
Sbjct: 381 KAPSKMSSAFSGTQDKCAACQKTVYPLEKLSLEGECYHKGCFKCSHGGCILT 536
Score = 40.9 bits (83), Expect(2) = 3e-037
Identities = 21/44 (47%), Positives = 22/44 (50%)
Frame = -3 / -1
Query: 492 VRXXXXCEHXXXLLW*XXXSRVXXXXGYXVFWHAAXLSXVPENA 361
VR CEH LW* S+ GY VF AA LS VPE A
Sbjct: 535 VRMQPPCEHLKQPLW*HSPSKDSFSNGYTVF*QAAHLS*VPEKA 404
Score = 40.0 bits (81), Expect(2) = 3e-025
Identities = 21/59 (35%), Positives = 26/59 (44%)
Frame = +1 / +2
Query: 316 IRQGXTDKGPKQAVVCIFWYPX*VRSMPENXVPAXXXNSGXXXLPQEXXXVLAXXXXPD 492
IR K KQ V+C+ W *+ + +N VP G LPQ VLA PD
Sbjct: 359 IRGEERGKSSKQDVICLLWNSG*MCGLSKNRVPIGEAILGGRMLPQGLLQVLAWWLHPD 535
Score = 36.8 bits (74), Expect(2) = 5e-021
Identities = 17/49 (34%), Positives = 21/49 (42%)
Frame = -1 / -2
Query: 491 SGXXXXASTXXXSCGXXXXPELXXXAGTXFSGMLRTYXGYQKMQTTACL 345
SG AST CG P + GT F Y +Q+ Q T+CL
Sbjct: 534 SGCSHHAST*SSPCGSILPPRIASPMGTRFFDRPHIYPEFQRRQMTSCL 388
>gb|BQ764354.1|BQ764354 EBan01_SQ005_I18_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ005_I18 5', mRNA sequence
Length = 598
Score = 156 bits (336), Expect(2) = 4e-053
Identities = 61/86 (70%), Positives = 64/86 (74%)
Frame = +2 / +3
Query: 68 TMSFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXXLYCK 247
TMSFTG QDKC CDKT HFIDLLT YHKTC HCKG SMC+YSSMD LYCK
Sbjct: 117 TMSFTGTQDKCKTCDKTVHFIDLLTADGVSYHKTCFKCSHCKGTLSMCNYSSMDGVLYCK 296
Query: 248 THFEQLFKXTGSFSKNFTPXXXSSDK 325
THFEQLFK TGSFSK FTP S++K
Sbjct: 297 THFEQLFKETGSFSKKFTPGGKSAEK 374
Score = 133 bits (285), Expect(2) = 3e-037
Identities = 57/79 (72%), Positives = 58/79 (73%)
Frame = -3 / -1
Query: 303 GVKFLEKLPVXLKSCSKWVLQYXXXSMEE*LHIEXXPLQWXXLXHVLW*MXXXXVRRSMK 124
GV F EKLPV LKSCSKWVLQ SMEE*LHIE PLQW L HVLW* VRRSMK
Sbjct: 352 GVNFFEKLPVSLKSCSKWVLQ*RTPSMEE*LHIERVPLQWLHLKHVLW*ETPSAVRRSMK 173
Query: 123 WXVLSXXVHLSCXPVKDMV 67
W VLS +HLSC PVKDMV
Sbjct: 172 WTVLSHVLHLSCVPVKDMV 116
Score = 94.1 bits (199), Expect(2) = 3e-025
Identities = 43/91 (47%), Positives = 48/91 (52%)
Frame = +1 / +2
Query: 31 CVRSCSHRQASGHHVFHRXAGQVHXXRQDXPLHRPPHXXXXHLP*DMXQXXPXXXXXXXX 210
CV + HHVFHR AGQV RQD PLHRPPH LP DM Q P
Sbjct: 80 CVLIARPITGADHHVFHRHAGQVQDVRQDRPLHRPPHRRRRLLPQDMLQVQPLQGDPLDV 259
Query: 211 XXXXHGRXXVLQDPLRAALQXDRELLQELHA 303
HG +LQDP R LQ D ELL+E++A
Sbjct: 260 QLLFHGWCPLLQDPFRTTLQGDGELLKEIYA 352
Score = 83.1 bits (175), Expect(2) = 5e-021
Identities = 35/53 (66%), Positives = 36/53 (67%)
Frame = -1 / -2
Query: 227 PWRSSCTSXXXLCSGXX*XMSYGRWXXXX*GGR*SGXSCRXXCTCPAXR*KTW 69
PW+SSCTS CSG * MS GR *GGR*SG SCR CTCPA R*KTW
Sbjct: 276 PWKSSCTSRGSPCSGCT*SMSCGRRRRRR*GGR*SGRSCRTSCTCPACR*KTW 118
Score = 70.7 bits (148), Expect(2) = 4e-053
Identities = 31/52 (59%), Positives = 34/52 (65%)
Frame = +2 / +3
Query: 338 RAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKCSXXXXXLT 493
+APSK+SSAFSGT DK AACQKT YP L+L YHK KCS LT
Sbjct: 384 KAPSKMSSAFSGTQDKCAACQKTVYPLEKLSLEGECYHKGCFKCSHGGCILT 539
Score = 40.9 bits (83), Expect(2) = 3e-037
Identities = 21/44 (47%), Positives = 22/44 (50%)
Frame = -3 / -1
Query: 492 VRXXXXCEHXXXLLW*XXXSRVXXXXGYXVFWHAAXLSXVPENA 361
VR CEH LW* S+ GY VF AA LS VPE A
Sbjct: 538 VRMQPPCEHLKQPLW*HSPSKDSFSNGYTVF*QAAHLS*VPEKA 407
Score = 40.0 bits (81), Expect(2) = 3e-025
Identities = 21/59 (35%), Positives = 26/59 (44%)
Frame = +1 / +2
Query: 316 IRQGXTDKGPKQAVVCIFWYPX*VRSMPENXVPAXXXNSGXXXLPQEXXXVLAXXXXPD 492
IR K KQ V+C+ W *+ + +N VP G LPQ VLA PD
Sbjct: 362 IRGEERGKSSKQDVICLLWNSG*MCGLSKNRVPIGEAILGGRMLPQGLLQVLAWWLHPD 538
Score = 36.8 bits (74), Expect(2) = 5e-021
Identities = 17/49 (34%), Positives = 21/49 (42%)
Frame = -1 / -2
Query: 491 SGXXXXASTXXXSCGXXXXPELXXXAGTXFSGMLRTYXGYQKMQTTACL 345
SG AST CG P + GT F Y +Q+ Q T+CL
Sbjct: 537 SGCSHHAST*SSPCGSILPPRIASPMGTRFFDRPHIYPEFQRRQMTSCL 391
>gb|CK123865.1|CK123865 BES1824105n21 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010N215 5-PRIME, mRNA sequence
Length = 823
Score = 92.7 bits (196), Expect(2) = 2e-031
Identities = 34/74 (45%), Positives = 45/74 (60%)
Frame = +2 / +1
Query: 77 FTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXXLYCKTHF 256
F+G Q KC C KT + +D L+ ++H+ C HCK S SYSS + YCK HF
Sbjct: 76 FSGTQQKCKVCTKTVYPMDQLSTDGAVFHRACFKCHHCKSTLSFSSYSSFEGVPYCKPHF 255
Query: 257 EQLFKXTGSFSKNF 298
QLFK TGS++K+F
Sbjct: 256 AQLFKETGSYNKSF 297
Score = 62.5 bits (130), Expect(2) = 2e-031
Identities = 25/47 (53%), Positives = 29/47 (61%)
Frame = +2 / +1
Query: 332 LTRAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKCS 472
LTR+PSK + FSGT DK A C KT YP +T+ YHK KCS
Sbjct: 346 LTRSPSKAAGMFSGTQDKCATCGKTAYPLEKVTVEEKSYHKSCFKCS 486
>gb|CK125568.1|CK125568 BES1824109b06 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010B069 5-PRIME, mRNA sequence
Length = 782
Score = 92.7 bits (196), Expect(2) = 2e-031
Identities = 34/74 (45%), Positives = 45/74 (60%)
Frame = +2 / +3
Query: 77 FTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXXLYCKTHF 256
F+G Q KC C KT + +D L+ ++H+ C HCK S SYSS + YCK HF
Sbjct: 84 FSGTQQKCKVCTKTVYPMDQLSTDGAVFHRACFKCHHCKSTLSFSSYSSFEGVPYCKPHF 263
Query: 257 EQLFKXTGSFSKNF 298
QLFK TGS++K+F
Sbjct: 264 AQLFKETGSYNKSF 305
Score = 62.5 bits (130), Expect(2) = 2e-031
Identities = 25/47 (53%), Positives = 29/47 (61%)
Frame = +2 / +3
Query: 332 LTRAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKCS 472
LTR+PSK + FSGT DK A C KT YP +T+ YHK KCS
Sbjct: 354 LTRSPSKAAGMFSGTQDKCATCGKTAYPLEKVTVEEKSYHKSCFKCS 494
>gb|AV926936.1|AV926936 AV926936 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd26c07 5', mRNA sequence
Length = 733
Score = 92.7 bits (196), Expect(2) = 2e-031
Identities = 34/74 (45%), Positives = 45/74 (60%)
Frame = +2 / +2
Query: 77 FTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXXLYCKTHF 256
F+G Q KC C KT + +D L+ ++H+ C HCK S SYSS + YCK HF
Sbjct: 218 FSGTQQKCKVCTKTVYPMDQLSTDGAVFHRACFKCHHCKSTLSFSSYSSFEGVPYCKPHF 397
Query: 257 EQLFKXTGSFSKNF 298
QLFK TGS++K+F
Sbjct: 398 AQLFKETGSYNKSF 439
Score = 62.5 bits (130), Expect(2) = 2e-031
Identities = 25/47 (53%), Positives = 29/47 (61%)
Frame = +2 / +2
Query: 332 LTRAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKCS 472
LTR+PSK + FSGT DK A C KT YP +T+ YHK KCS
Sbjct: 488 LTRSPSKAAGMFSGTQDKCATCGKTAYPLEKVTVEEKSYHKSCFKCS 628
>gb|BQ765063.1|BQ765063 EBca01_SQ005_N18_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ005_N18 5', mRNA sequence
Length = 716
Score = 92.7 bits (196), Expect(2) = 2e-031
Identities = 34/74 (45%), Positives = 45/74 (60%)
Frame = +2 / +1
Query: 77 FTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXXLYCKTHF 256
F+G Q KC C KT + +D L+ ++H+ C HCK S SYSS + YCK HF
Sbjct: 76 FSGTQQKCKVCTKTVYPMDQLSTDGAVFHRACFKCHHCKSTLSFSSYSSFEGVPYCKPHF 255
Query: 257 EQLFKXTGSFSKNF 298
QLFK TGS++K+F
Sbjct: 256 AQLFKETGSYNKSF 297
Score = 62.5 bits (130), Expect(2) = 2e-031
Identities = 25/47 (53%), Positives = 29/47 (61%)
Frame = +2 / +1
Query: 332 LTRAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKCS 472
LTR+PSK + FSGT DK A C KT YP +T+ YHK KCS
Sbjct: 346 LTRSPSKAAGMFSGTQDKCATCGKTAYPLEKVTVEEKSYHKSCFKCS 486
>gb|AL505296.1|AL505296 AL505296 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW08A11V 5', mRNA sequence
Length = 689
Score = 92.7 bits (196), Expect(2) = 2e-031
Identities = 34/74 (45%), Positives = 45/74 (60%)
Frame = +2 / +2
Query: 77 FTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXXLYCKTHF 256
F+G Q KC C KT + +D L+ ++H+ C HCK S SYSS + YCK HF
Sbjct: 35 FSGTQQKCKVCTKTVYPMDQLSTDGAVFHRACFKCHHCKSTLSFSSYSSFEGVPYCKPHF 214
Query: 257 EQLFKXTGSFSKNF 298
QLFK TGS++K+F
Sbjct: 215 AQLFKETGSYNKSF 256
Score = 62.5 bits (130), Expect(2) = 2e-031
Identities = 25/47 (53%), Positives = 29/47 (61%)
Frame = +2 / +2
Query: 332 LTRAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKCS 472
LTR+PSK + FSGT DK A C KT YP +T+ YHK KCS
Sbjct: 305 LTRSPSKAAGMFSGTQDKCATCGKTAYPLEKVTVEEKSYHKSCFKCS 445
>gb|CA032315.1|CA032315 HX12K14r HX Hordeum vulgare subsp. vulgare cDNA clone HX12K14
5-PRIME, mRNA sequence
Length = 666
Score = 92.7 bits (196), Expect(2) = 2e-031
Identities = 34/74 (45%), Positives = 45/74 (60%)
Frame = +2 / +1
Query: 77 FTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXXLYCKTHF 256
F+G Q KC C KT + +D L+ ++H+ C HCK S SYSS + YCK HF
Sbjct: 208 FSGTQQKCKVCTKTVYPMDQLSTDGAVFHRACFKCHHCKSTLSFSSYSSFEGVPYCKPHF 387
Query: 257 EQLFKXTGSFSKNF 298
QLFK TGS++K+F
Sbjct: 388 AQLFKETGSYNKSF 429
Score = 62.5 bits (130), Expect(2) = 2e-031
Identities = 25/47 (53%), Positives = 29/47 (61%)
Frame = +2 / +1
Query: 332 LTRAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKCS 472
LTR+PSK + FSGT DK A C KT YP +T+ YHK KCS
Sbjct: 478 LTRSPSKAAGMFSGTQDKCATCGKTAYPLEKVTVEEKSYHKSCFKCS 618
>gb|BM377129.2|BM377129 EBem05_SQ004_D11_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ004_D11 5', mRNA sequence
Length = 625
Score = 92.7 bits (196), Expect(2) = 2e-031
Identities = 34/74 (45%), Positives = 45/74 (60%)
Frame = +2 / +3
Query: 77 FTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXXLYCKTHF 256
F+G Q KC C KT + +D L+ ++H+ C HCK S SYSS + YCK HF
Sbjct: 177 FSGTQQKCKVCTKTVYPMDQLSTDGAVFHRACFKCHHCKSTLSFSSYSSFEGVPYCKPHF 356
Query: 257 EQLFKXTGSFSKNF 298
QLFK TGS++K+F
Sbjct: 357 AQLFKETGSYNKSF 398
Score = 62.5 bits (130), Expect(2) = 2e-031
Identities = 25/47 (53%), Positives = 29/47 (61%)
Frame = +2 / +3
Query: 332 LTRAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKCS 472
LTR+PSK + FSGT DK A C KT YP +T+ YHK KCS
Sbjct: 447 LTRSPSKAAGMFSGTQDKCATCGKTAYPLEKVTVEEKSYHKSCFKCS 587
>gb|CA025095.1|CA025095 HZ51D05r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ51D05
5-PRIME, mRNA sequence
Length = 587
Score = 92.7 bits (196), Expect(2) = 2e-031
Identities = 34/74 (45%), Positives = 45/74 (60%)
Frame = +2 / +1
Query: 77 FTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXXLYCKTHF 256
F+G Q KC C KT + +D L+ ++H+ C HCK S SYSS + YCK HF
Sbjct: 55 FSGTQQKCKVCTKTVYPMDQLSTDGAVFHRACFKCHHCKSTLSFSSYSSFEGVPYCKPHF 234
Query: 257 EQLFKXTGSFSKNF 298
QLFK TGS++K+F
Sbjct: 235 AQLFKETGSYNKSF 276
Score = 62.5 bits (130), Expect(2) = 2e-031
Identities = 25/47 (53%), Positives = 29/47 (61%)
Frame = +2 / +1
Query: 332 LTRAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKCS 472
LTR+PSK + FSGT DK A C KT YP +T+ YHK KCS
Sbjct: 325 LTRSPSKAAGMFSGTQDKCATCGKTAYPLEKVTVEEKSYHKSCFKCS 465
>gb|BU996702.1|BU996702 HM14H14r HM Hordeum vulgare subsp. vulgare cDNA clone HM14H14
5-PRIME, mRNA sequence
Length = 558
Score = 92.7 bits (196), Expect(2) = 2e-031
Identities = 34/74 (45%), Positives = 45/74 (60%)
Frame = +2 / +3
Query: 77 FTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXXLYCKTHF 256
F+G Q KC C KT + +D L+ ++H+ C HCK S SYSS + YCK HF
Sbjct: 147 FSGTQQKCKVCTKTVYPMDQLSTDGAVFHRACFKCHHCKSTLSFSSYSSFEGVPYCKPHF 326
Query: 257 EQLFKXTGSFSKNF 298
QLFK TGS++K+F
Sbjct: 327 AQLFKETGSYNKSF 368
Score = 62.5 bits (130), Expect(2) = 2e-031
Identities = 25/47 (53%), Positives = 29/47 (61%)
Frame = +2 / +3
Query: 332 LTRAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKCS 472
LTR+PSK + FSGT DK A C KT YP +T+ YHK KCS
Sbjct: 417 LTRSPSKAAGMFSGTQDKCATCGKTAYPLEKVTVEEKSYHKSCFKCS 557
>gb|BG300145.1|BG300145 HVSMEb0010G24f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0010G24f, mRNA sequence
Length = 517
Score = 92.7 bits (196), Expect(2) = 2e-031
Identities = 34/74 (45%), Positives = 45/74 (60%)
Frame = +2 / +3
Query: 77 FTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXXLYCKTHF 256
F+G Q KC C KT + +D L+ ++H+ C HCK S SYSS + YCK HF
Sbjct: 24 FSGTQQKCKVCTKTVYPMDQLSTDGAVFHRACFKCHHCKSTLSFSSYSSFEGVPYCKPHF 203
Query: 257 EQLFKXTGSFSKNF 298
QLFK TGS++K+F
Sbjct: 204 AQLFKETGSYNKSF 245
Score = 62.5 bits (130), Expect(2) = 2e-031
Identities = 25/47 (53%), Positives = 29/47 (61%)
Frame = +2 / +3
Query: 332 LTRAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKCS 472
LTR+PSK + FSGT DK A C KT YP +T+ YHK KCS
Sbjct: 294 LTRSPSKAAGMFSGTQDKCATCGKTAYPLEKVTVEEKSYHKSCFKCS 434
>gb|BM369644.2|BM369644 EBem07_SQ004_D10_R embryo, 28 DPA, no treatment, cv Optic, EBem07
Hordeum vulgare subsp. vulgare cDNA clone
EBem07_SQ004_D10 5', mRNA sequence
Length = 512
Score = 92.7 bits (196), Expect(2) = 2e-031
Identities = 34/74 (45%), Positives = 45/74 (60%)
Frame = +2 / +1
Query: 77 FTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXXLYCKTHF 256
F+G Q KC C KT + +D L+ ++H+ C HCK S SYSS + YCK HF
Sbjct: 19 FSGTQQKCKVCTKTVYPMDQLSTDGAVFHRACFKCHHCKSTLSFSSYSSFEGVPYCKPHF 198
Query: 257 EQLFKXTGSFSKNF 298
QLFK TGS++K+F
Sbjct: 199 AQLFKETGSYNKSF 240
Score = 62.5 bits (130), Expect(2) = 2e-031
Identities = 25/47 (53%), Positives = 29/47 (61%)
Frame = +2 / +1
Query: 332 LTRAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKCS 472
LTR+PSK + FSGT DK A C KT YP +T+ YHK KCS
Sbjct: 289 LTRSPSKAAGMFSGTQDKCATCGKTAYPLEKVTVEEKSYHKSCFKCS 429
>gb|BQ469637.1|BQ469637 HZ01G16r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ01G16
5-PRIME, mRNA sequence
Length = 509
Score = 92.7 bits (196), Expect(2) = 2e-031
Identities = 34/74 (45%), Positives = 45/74 (60%)
Frame = +2 / +1
Query: 77 FTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXXLYCKTHF 256
F+G Q KC C KT + +D L+ ++H+ C HCK S SYSS + YCK HF
Sbjct: 94 FSGTQQKCKVCTKTVYPMDQLSTDGAVFHRACFKCHHCKSTLSFSSYSSFEGVPYCKPHF 273
Query: 257 EQLFKXTGSFSKNF 298
QLFK TGS++K+F
Sbjct: 274 AQLFKETGSYNKSF 315
Score = 62.5 bits (130), Expect(2) = 2e-031
Identities = 25/47 (53%), Positives = 29/47 (61%)
Frame = +2 / +1
Query: 332 LTRAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKCS 472
LTR+PSK + FSGT DK A C KT YP +T+ YHK KCS
Sbjct: 364 LTRSPSKAAGMFSGTQDKCATCGKTAYPLEKVTVEEKSYHKSCFKCS 504
>gb|BM376958.2|BM376958 EBem05_SQ003_L10_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ003_L10 5', mRNA sequence
Length = 464
Score = 102 bits (218), Expect(2) = 6e-031
Identities = 36/75 (48%), Positives = 46/75 (61%)
Frame = +2 / +3
Query: 74 SFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXXLYCKTH 253
SF G KC CDKT + +D LT +YHK C HCKG + +Y+S + LYC+ H
Sbjct: 18 SFQGTTTKCNACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLANYNSFEGVLYCRPH 197
Query: 254 FEQLFKXTGSFSKNF 298
F+QLFK TGS K+F
Sbjct: 198 FDQLFKRTGSLDKSF 242
Score = 50.1 bits (103), Expect(2) = 6e-031
Identities = 21/57 (36%), Positives = 28/57 (49%)
Frame = +2 / +3
Query: 299 TPXXXSSDKXXLTRAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKC 469
TP ++ K+SSAF+GT +K C KT YP +T+ YHK KC
Sbjct: 249 TPKVVKPERNVGNENAIKVSSAFAGTREKCFGCSKTVYPIERVTVNNTMYHKSCFKC 419
>gb|BI950605.1|BI950605 HVSMEl0021J24f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0021J24f, mRNA sequence
Length = 865
Score = 90.4 bits (191), Expect(2) = 8e-031
Identities = 33/74 (44%), Positives = 44/74 (59%)
Frame = +2 / +1
Query: 77 FTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXXLYCKTHF 256
F+G Q KC C KT + +D + ++H+ C HCK S SYSS + YCK HF
Sbjct: 106 FSGTQQKCKVCTKTVYPMDQVCTDGAVFHRACFKCHHCKSTLSFSSYSSFEGVPYCKPHF 285
Query: 257 EQLFKXTGSFSKNF 298
QLFK TGS++K+F
Sbjct: 286 AQLFKETGSYNKSF 327
Score = 62.5 bits (130), Expect(2) = 8e-031
Identities = 25/47 (53%), Positives = 29/47 (61%)
Frame = +2 / +1
Query: 332 LTRAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKCS 472
LTR+PSK + FSGT DK A C KT YP +T+ YHK KCS
Sbjct: 376 LTRSPSKAAGMFSGTQDKCATCGKTAYPLEKVTVEEKSYHKSCFKCS 516
>gb|AW982205.2|AW982205 HVSMEg0002E10f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0002E10f, mRNA sequence
Length = 828
Score = 102 bits (218), Expect(2) = 8e-031
Identities = 36/75 (48%), Positives = 46/75 (61%)
Frame = +2 / +1
Query: 74 SFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXXLYCKTH 253
SF G KC CDKT + +D LT +YHK C HCKG + +Y+S + LYC+ H
Sbjct: 181 SFQGTTTKCNACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLANYNSFEGVLYCRPH 360
Query: 254 FEQLFKXTGSFSKNF 298
F+QLFK TGS K+F
Sbjct: 361 FDQLFKRTGSLDKSF 405
Score = 50.1 bits (103), Expect(2) = 8e-031
Identities = 21/57 (36%), Positives = 28/57 (49%)
Frame = +2 / +1
Query: 299 TPXXXSSDKXXLTRAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKC 469
TP ++ K+SSAF+GT +K C KT YP +T+ YHK KC
Sbjct: 412 TPKVVKPERNVGNENAIKVSSAFAGTREKCFGCSKTVYPIERVTVNNTMYHKSCFKC 582
>gb|AL506237.1|AL506237 AL506237 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY02H15T 5',
mRNA sequence
Length = 697
Score = 102 bits (218), Expect(2) = 8e-031
Identities = 36/75 (48%), Positives = 46/75 (61%)
Frame = +2 / +3
Query: 74 SFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXXLYCKTH 253
SF G KC CDKT + +D LT +YHK C HCKG + +Y+S + LYC+ H
Sbjct: 57 SFQGTTTKCNACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLANYNSFEGVLYCRPH 236
Query: 254 FEQLFKXTGSFSKNF 298
F+QLFK TGS K+F
Sbjct: 237 FDQLFKRTGSLDKSF 281
Score = 50.1 bits (103), Expect(2) = 8e-031
Identities = 21/57 (36%), Positives = 28/57 (49%)
Frame = +2 / +3
Query: 299 TPXXXSSDKXXLTRAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKC 469
TP ++ K+SSAF+GT +K C KT YP +T+ YHK KC
Sbjct: 288 TPKVVKPERNVGNENAIKVSSAFAGTREKCFGCSKTVYPIERVTVNNTMYHKSCFKC 458
>gb|BQ464047.1|BQ464047 HF01D07T HF Hordeum vulgare subsp. vulgare cDNA clone HF01D07
5-PRIME, mRNA sequence
Length = 679
Score = 102 bits (218), Expect(2) = 8e-031
Identities = 36/75 (48%), Positives = 46/75 (61%)
Frame = +2 / +2
Query: 74 SFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXXLYCKTH 253
SF G KC CDKT + +D LT +YHK C HCKG + +Y+S + LYC+ H
Sbjct: 116 SFQGTTTKCNACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLANYNSFEGVLYCRPH 295
Query: 254 FEQLFKXTGSFSKNF 298
F+QLFK TGS K+F
Sbjct: 296 FDQLFKRTGSLDKSF 340
Score = 50.1 bits (103), Expect(2) = 8e-031
Identities = 21/57 (36%), Positives = 28/57 (49%)
Frame = +2 / +2
Query: 299 TPXXXSSDKXXLTRAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKC 469
TP ++ K+SSAF+GT +K C KT YP +T+ YHK KC
Sbjct: 347 TPKVVKPERNVGNENAIKVSSAFAGTREKCFGCSKTVYPIERVTVNNTMYHKSCFKC 517
>gb|BQ460388.1|BQ460388 HA09M17r HA Hordeum vulgare subsp. vulgare cDNA clone HA09M17
5-PRIME, mRNA sequence
Length = 635
Score = 102 bits (218), Expect(2) = 8e-031
Identities = 36/75 (48%), Positives = 46/75 (61%)
Frame = +2 / +2
Query: 74 SFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXXLYCKTH 253
SF G KC CDKT + +D LT +YHK C HCKG + +Y+S + LYC+ H
Sbjct: 71 SFQGTTTKCNACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLANYNSFEGVLYCRPH 250
Query: 254 FEQLFKXTGSFSKNF 298
F+QLFK TGS K+F
Sbjct: 251 FDQLFKRTGSLDKSF 295
Score = 50.1 bits (103), Expect(2) = 8e-031
Identities = 21/57 (36%), Positives = 28/57 (49%)
Frame = +2 / +2
Query: 299 TPXXXSSDKXXLTRAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKC 469
TP ++ K+SSAF+GT +K C KT YP +T+ YHK KC
Sbjct: 302 TPKVVKPERNVGNENAIKVSSAFAGTREKCFGCSKTVYPIERVTVNNTMYHKSCFKC 472
>gb|BJ463425.1|BJ463425 BJ463425 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags27k10 5', mRNA sequence
Length = 634
Score = 102 bits (218), Expect(2) = 8e-031
Identities = 36/75 (48%), Positives = 46/75 (61%)
Frame = +2 / +2
Query: 74 SFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXXLYCKTH 253
SF G KC CDKT + +D LT +YHK C HCKG + +Y+S + LYC+ H
Sbjct: 101 SFQGTTTKCNACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLANYNSFEGVLYCRPH 280
Query: 254 FEQLFKXTGSFSKNF 298
F+QLFK TGS K+F
Sbjct: 281 FDQLFKRTGSLDKSF 325
Score = 50.1 bits (103), Expect(2) = 8e-031
Identities = 21/57 (36%), Positives = 28/57 (49%)
Frame = +2 / +2
Query: 299 TPXXXSSDKXXLTRAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKC 469
TP ++ K+SSAF+GT +K C KT YP +T+ YHK KC
Sbjct: 332 TPKVVKPERNVGNENAIKVSSAFAGTREKCFGCSKTVYPIERVTVNNTMYHKSCFKC 502
>gb|BU988629.1|BU988629 HF18D11r HF Hordeum vulgare subsp. vulgare cDNA clone HF18D11
5-PRIME, mRNA sequence
Length = 631
Score = 102 bits (218), Expect(2) = 8e-031
Identities = 36/75 (48%), Positives = 46/75 (61%)
Frame = +2 / +3
Query: 74 SFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXXLYCKTH 253
SF G KC CDKT + +D LT +YHK C HCKG + +Y+S + LYC+ H
Sbjct: 201 SFQGTTTKCNACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLANYNSFEGVLYCRPH 380
Query: 254 FEQLFKXTGSFSKNF 298
F+QLFK TGS K+F
Sbjct: 381 FDQLFKRTGSLDKSF 425
Score = 50.1 bits (103), Expect(2) = 8e-031
Identities = 21/57 (36%), Positives = 28/57 (49%)
Frame = +2 / +3
Query: 299 TPXXXSSDKXXLTRAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKC 469
TP ++ K+SSAF+GT +K C KT YP +T+ YHK KC
Sbjct: 432 TPKVVKPERNVGNENAIKVSSAFAGTREKCFGCSKTVYPIERVTVNNTMYHKSCFKC 602
>gb|BU997945.1|BU997945 HI09I01r HI Hordeum vulgare subsp. vulgare cDNA clone HI09I01
5-PRIME, mRNA sequence
Length = 584
Score = 102 bits (218), Expect(2) = 8e-031
Identities = 36/75 (48%), Positives = 46/75 (61%)
Frame = +2 / +3
Query: 74 SFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXXLYCKTH 253
SF G KC CDKT + +D LT +YHK C HCKG + +Y+S + LYC+ H
Sbjct: 54 SFQGTTTKCNACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLANYNSFEGVLYCRPH 233
Query: 254 FEQLFKXTGSFSKNF 298
F+QLFK TGS K+F
Sbjct: 234 FDQLFKRTGSLDKSF 278
Score = 50.1 bits (103), Expect(2) = 8e-031
Identities = 21/57 (36%), Positives = 28/57 (49%)
Frame = +2 / +3
Query: 299 TPXXXSSDKXXLTRAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKC 469
TP ++ K+SSAF+GT +K C KT YP +T+ YHK KC
Sbjct: 285 TPKVVKPERNVGNENAIKVSSAFAGTREKCFGCSKTVYPIERVTVNNTMYHKSCFKC 455
>gb|BQ471999.1|BQ471999 HV04C01r HV Hordeum vulgare subsp. vulgare cDNA clone HV04C01
5-PRIME, mRNA sequence
Length = 572
Score = 102 bits (218), Expect(2) = 8e-031
Identities = 36/75 (48%), Positives = 46/75 (61%)
Frame = +2 / +2
Query: 74 SFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXXLYCKTH 253
SF G KC CDKT + +D LT +YHK C HCKG + +Y+S + LYC+ H
Sbjct: 80 SFQGTTTKCNACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLANYNSFEGVLYCRPH 259
Query: 254 FEQLFKXTGSFSKNF 298
F+QLFK TGS K+F
Sbjct: 260 FDQLFKRTGSLDKSF 304
Score = 50.1 bits (103), Expect(2) = 8e-031
Identities = 21/57 (36%), Positives = 28/57 (49%)
Frame = +2 / +2
Query: 299 TPXXXSSDKXXLTRAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKC 469
TP ++ K+SSAF+GT +K C KT YP +T+ YHK KC
Sbjct: 311 TPKVVKPERNVGNENAIKVSSAFAGTREKCFGCSKTVYPIERVTVNNTMYHKSCFKC 481
>gb|BM373914.2|BM373914 EBma03_SQ003_B17_R maternal, 8 DPA, no treatment, cv Optic, EBma03
Hordeum vulgare subsp. vulgare cDNA clone
EBma03_SQ003_B17 5', mRNA sequence
Length = 631
Score = 102 bits (217), Expect(2) = 1e-030
Identities = 36/75 (48%), Positives = 46/75 (61%)
Frame = +2 / +1
Query: 74 SFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXXLYCKTH 253
SF G KC CDKT + +D LT +YHK C HCKG + +Y+S + LYC+ H
Sbjct: 73 SFQGTTTKCNACDKTVYLVDKLTADNRVYHKACFWCHHCKGTLKLANYNSFEGVLYCRPH 252
Query: 254 FEQLFKXTGSFSKNF 298
F+QLFK TGS K+F
Sbjct: 253 FDQLFKRTGSLDKSF 297
Score = 50.1 bits (103), Expect(2) = 1e-030
Identities = 21/57 (36%), Positives = 28/57 (49%)
Frame = +2 / +1
Query: 299 TPXXXSSDKXXLTRAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKC 469
TP ++ K+SSAF+GT +K C KT YP +T+ YHK KC
Sbjct: 304 TPKVVKPERNVGNENAIKVSSAFAGTREKCFGCSKTVYPIERVTVNNTMYHKSCFKC 474
>gb|BJ463541.1|BJ463541 BJ463541 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags32g17 5', mRNA sequence
Length = 604
Score = 90.0 bits (190), Expect(2) = 1e-030
Identities = 33/73 (45%), Positives = 44/73 (60%)
Frame = +2 / +3
Query: 80 TGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXXLYCKTHFE 259
+G Q KC C KT + +D L+ ++H+ C HCK S SYSS + YCK HF
Sbjct: 51 SGTQQKCKVCTKTVYPMDQLSTDGAVFHRACFKCHHCKSTLSFSSYSSFEGVPYCKPHFA 230
Query: 260 QLFKXTGSFSKNF 298
QLFK TGS++K+F
Sbjct: 231 QLFKETGSYNKSF 269
Score = 62.5 bits (130), Expect(2) = 1e-030
Identities = 25/47 (53%), Positives = 29/47 (61%)
Frame = +2 / +3
Query: 332 LTRAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKCS 472
LTR+PSK + FSGT DK A C KT YP +T+ YHK KCS
Sbjct: 318 LTRSPSKAAGMFSGTQDKCATCGKTAYPLEKVTVEEKSYHKSCFKCS 458
>gb|BM442216.2|BM442216 EBan01_SQ002_I23_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ002_I23 5', mRNA sequence
Length = 284
Score = 131 bits (280), Expect = 3e-030
Identities = 50/76 (65%), Positives = 54/76 (71%)
Frame = +2 / +1
Query: 71 MSFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXXLYCKT 250
M+F G QDKC C+KT HFIDLLT YHK C HCK SMCSYSSMD L+CKT
Sbjct: 49 MTFYGTQDKCKACNKTVHFIDLLTADSVPYHKYCFKCSHCKSTLSMCSYSSMDGVLFCKT 228
Query: 251 HFEQLFKXTGSFSKNF 298
HFEQLFK TG+F KNF
Sbjct: 229 HFEQLFKETGTFKKNF 276
>gb|BM376791.2|BM376791 EBem05_SQ003_E02_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ003_E02 5', mRNA sequence
Length = 646
Score = 100 bits (213), Expect(2) = 4e-030
Identities = 35/75 (46%), Positives = 46/75 (61%)
Frame = +2 / +1
Query: 74 SFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXXLYCKTH 253
SF G KC CDKT + +D LT ++HK C HCKG + +Y+S + LYC+ H
Sbjct: 70 SFQGTTTKCNACDKTVYLVDKLTADNRVHHKACFRCHHCKGTLKLANYNSFEGVLYCRPH 249
Query: 254 FEQLFKXTGSFSKNF 298
F+QLFK TGS K+F
Sbjct: 250 FDQLFKRTGSLDKSF 294
Score = 50.1 bits (103), Expect(2) = 4e-030
Identities = 21/57 (36%), Positives = 28/57 (49%)
Frame = +2 / +1
Query: 299 TPXXXSSDKXXLTRAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKC 469
TP ++ K+SSAF+GT +K C KT YP +T+ YHK KC
Sbjct: 301 TPKVVKPERNVGNENAIKVSSAFAGTREKCFGCSKTVYPIERVTVNNTMYHKSCFKC 471
>gb|AL505692.1|AL505692 AL505692 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW09D21V 5', mRNA sequence
Length = 470
Score = 92.7 bits (196), Expect(2) = 8e-030
Identities = 34/74 (45%), Positives = 45/74 (60%)
Frame = +2 / +1
Query: 77 FTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXXLYCKTHF 256
F+G Q KC C KT + +D L+ ++H+ C HCK S SYSS + YCK HF
Sbjct: 64 FSGTQQKCKVCTKTVYPMDQLSTDGAVFHRACFKCHHCKSTLSFSSYSSFEGVPYCKPHF 243
Query: 257 EQLFKXTGSFSKNF 298
QLFK TGS++K+F
Sbjct: 244 AQLFKETGSYNKSF 285
Score = 56.5 bits (117), Expect(2) = 8e-030
Identities = 23/45 (51%), Positives = 27/45 (60%)
Frame = +2 / +1
Query: 332 LTRAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXK 466
LTR+PSK + FSGT DK A C KT YP +T+ YHK K
Sbjct: 334 LTRSPSKAAGMFSGTQDKCATCGKTAYPLEKVTVEEKSYHKSCFK 468
>gb|BU999728.1|BU999728 HI15I03r HI Hordeum vulgare subsp. vulgare cDNA clone HI15I03
5-PRIME, mRNA sequence
Length = 543
Score = 92.7 bits (196), Expect(2) = 2e-029
Identities = 34/74 (45%), Positives = 45/74 (60%)
Frame = +2 / +2
Query: 77 FTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXXLYCKTHF 256
F+G Q KC C KT + +D L+ ++H+ C HCK S SYSS + YCK HF
Sbjct: 146 FSGTQQKCKVCTKTVYPMDQLSTDGAVFHRACFKCHHCKSTLSFSSYSSFEGVPYCKPHF 325
Query: 257 EQLFKXTGSFSKNF 298
QLFK TGS++K+F
Sbjct: 326 AQLFKETGSYNKSF 367
Score = 55.6 bits (115), Expect(2) = 2e-029
Identities = 22/41 (53%), Positives = 26/41 (63%)
Frame = +2 / +2
Query: 332 LTRAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHK 454
LTR+PSK + FSGT DK A C KT YP +T+ YHK
Sbjct: 416 LTRSPSKAAGMFSGTQDKCATCGKTAYPLEKVTVEEKSYHK 538
>gb|BU977218.1|BU977218 HA11A17r HA Hordeum vulgare subsp. vulgare cDNA clone HA11A17
5-PRIME, mRNA sequence
Length = 558
Score = 92.7 bits (196), Expect(2) = 4e-027
Identities = 34/74 (45%), Positives = 45/74 (60%)
Frame = +2 / +1
Query: 77 FTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXXLYCKTHF 256
F+G Q KC C KT + +D L+ ++H+ C HCK S SYSS + YCK HF
Sbjct: 187 FSGTQQKCKVCTKTVYPMDQLSTDGAVFHRACFKCHHCKSTLSFSSYSSFEGVPYCKPHF 366
Query: 257 EQLFKXTGSFSKNF 298
QLFK TGS++K+F
Sbjct: 367 AQLFKETGSYNKSF 408
Score = 47.8 bits (98), Expect(2) = 4e-027
Identities = 19/34 (55%), Positives = 23/34 (67%)
Frame = +2 / +1
Query: 332 LTRAPSKLSSAFSGTXDKXAACQKTXYPXXXLTL 433
LTR+PSK + FSGT DK A C KT YP +T+
Sbjct: 457 LTRSPSKAAGMFSGTQDKCATCGKTAYPLEKVTV 558
>gb|CA028260.1|CA028260 HZ61H10r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ61H10
5-PRIME, mRNA sequence
Length = 556
Score = 92.7 bits (196), Expect(2) = 4e-027
Identities = 34/74 (45%), Positives = 45/74 (60%)
Frame = +2 / +2
Query: 77 FTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXXLYCKTHF 256
F+G Q KC C KT + +D L+ ++H+ C HCK S SYSS + YCK HF
Sbjct: 185 FSGTQQKCKVCTKTVYPMDQLSTDGAVFHRACFKCHHCKSTLSFSSYSSFEGVPYCKPHF 364
Query: 257 EQLFKXTGSFSKNF 298
QLFK TGS++K+F
Sbjct: 365 AQLFKETGSYNKSF 406
Score = 47.8 bits (98), Expect(2) = 4e-027
Identities = 19/34 (55%), Positives = 23/34 (67%)
Frame = +2 / +2
Query: 332 LTRAPSKLSSAFSGTXDKXAACQKTXYPXXXLTL 433
LTR+PSK + FSGT DK A C KT YP +T+
Sbjct: 455 LTRSPSKAAGMFSGTQDKCATCGKTAYPLEKVTV 556
>gb|BQ764615.1|BQ764615 EBca01_SQ004_K11_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ004_K11 5', mRNA sequence
Length = 746
Score = 72.5 bits (152), Expect(3) = 8e-027
Identities = 24/48 (50%), Positives = 32/48 (66%)
Frame = +2 / +3
Query: 155 IYHKTCXXXXHCKGXXSMCSYSSMDXXLYCKTHFEQLFKXTGSFSKNF 298
+YHK C HCKG + +Y+S + LYC+ HF+QLFK TGS K+F
Sbjct: 96 VYHKACFRCHHCKGTLKLANYNSFEGVLYCRPHFDQLFKRTGSLDKSF 239
Score = 50.1 bits (103), Expect(3) = 8e-027
Identities = 21/57 (36%), Positives = 28/57 (49%)
Frame = +2 / +3
Query: 299 TPXXXSSDKXXLTRAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKC 469
TP ++ K+SSAF+GT +K C KT YP +T+ YHK KC
Sbjct: 246 TPKVVKPERNVGNENAIKVSSAFAGTREKCFGCSKTVYPIERVTVNNTMYHKSCFKC 416
Score = 34.5 bits (69), Expect(3) = 8e-027
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2 / +2
Query: 74 SFTGXQDKCTXCDKTXHFIDLLT 142
SF G KC CDKT + +D LT
Sbjct: 14 SFQGTTTKCNACDKTVYLVDKLT 82
>gb|BM374546.2|BM374546 EBpi03_SQ003_O19_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ003_O19 5', mRNA sequence
Length = 452
Score = 92.7 bits (196), Expect(2) = 1e-026
Identities = 34/74 (45%), Positives = 45/74 (60%)
Frame = +2 / +1
Query: 77 FTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXXLYCKTHF 256
F+G Q KC C KT + +D L+ ++H+ C HCK S SYSS + YCK HF
Sbjct: 94 FSGTQQKCKVCTKTVYPMDQLSTDGAVFHRACFKCHHCKSTLSFSSYSSFEGVPYCKPHF 273
Query: 257 EQLFKXTGSFSKNF 298
QLFK TGS++K+F
Sbjct: 274 PQLFKETGSYNKSF 315
Score = 46.0 bits (94), Expect(2) = 1e-026
Identities = 18/28 (64%), Positives = 20/28 (71%)
Frame = +2 / +1
Query: 332 LTRAPSKLSSAFSGTXDKXAACQKTXYP 415
LTR+PSK + FSGT DK A C KT YP
Sbjct: 364 LTRSPSKAAGMFSGTQDKCATCGKTAYP 447
>gb|BM372397.2|BM372397 EBro03_SQ004_N12_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ004_N12 5', mRNA sequence
Length = 581
Score = 69.8 bits (146), Expect(2) = 1e-024
Identities = 25/54 (46%), Positives = 33/54 (61%)
Frame = +2 / +2
Query: 137 LTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXXLYCKTHFEQLFKXTGSFSKNF 298
L+ ++H+ C HCK S SYSS + YCK HF QLFK TGS++K+F
Sbjct: 5 LSTDGAVFHRACFKCHHCKSTLSFSSYSSFEGVPYCKPHFAQLFKETGSYNKSF 166
Score = 62.5 bits (130), Expect(2) = 1e-024
Identities = 25/47 (53%), Positives = 29/47 (61%)
Frame = +2 / +2
Query: 332 LTRAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKCS 472
LTR+PSK + FSGT DK A C KT YP +T+ YHK KCS
Sbjct: 215 LTRSPSKAAGMFSGTQDKCATCGKTAYPLEKVTVEEKSYHKSCFKCS 355
>gb|BU982393.1|BU982393 HA26G16r HA Hordeum vulgare subsp. vulgare cDNA clone HA26G16
5-PRIME, mRNA sequence
Length = 417
Score = 92.7 bits (196), Expect(2) = 4e-024
Identities = 34/74 (45%), Positives = 45/74 (60%)
Frame = +2 / +2
Query: 77 FTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXXLYCKTHF 256
F+G Q KC C KT + +D L+ ++H+ C HCK S SYSS + YCK HF
Sbjct: 74 FSGTQQKCKVCTKTVYPMDQLSTDGAVFHRACFKCHHCKSTLSFSSYSSFEGVPYCKPHF 253
Query: 257 EQLFKXTGSFSKNF 298
QLFK TGS++K+F
Sbjct: 254 AQLFKETGSYNKSF 295
Score = 37.3 bits (75), Expect(2) = 4e-024
Identities = 15/24 (62%), Positives = 17/24 (70%)
Frame = +2 / +2
Query: 332 LTRAPSKLSSAFSGTXDKXAACQK 403
LTR+PSK + FSGT DK A C K
Sbjct: 344 LTRSPSKAAGMFSGTQDKCATCGK 415
>gb|CA017403.1|CA017403 HV05B16r HV Hordeum vulgare subsp. vulgare cDNA clone HV05B16
5-PRIME, mRNA sequence
Length = 500
Score = 92.7 bits (196), Expect(2) = 1e-023
Identities = 34/74 (45%), Positives = 45/74 (60%)
Frame = +2 / +2
Query: 77 FTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXXLYCKTHF 256
F+G Q KC C KT + +D L+ ++H+ C HCK S SYSS + YCK HF
Sbjct: 164 FSGTQQKCKVCTKTVYPMDQLSTDGAVFHRACFKCHHCKSTLSFSSYSSFEGVPYCKPHF 343
Query: 257 EQLFKXTGSFSKNF 298
QLFK TGS++K+F
Sbjct: 344 AQLFKETGSYNKSF 385
Score = 35.9 bits (72), Expect(2) = 1e-023
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = +2 / +2
Query: 332 LTRAPSKLSSAFSGTXDKXAAC 397
LTR+PSK + FSGT DK A C
Sbjct: 434 LTRSPSKAAGMFSGTQDKCATC 499
>gb|BU988248.1|BU988248 HF17B16r HF Hordeum vulgare subsp. vulgare cDNA clone HF17B16
5-PRIME, mRNA sequence
Length = 532
Score = 102 bits (218), Expect(2) = 3e-023
Identities = 36/75 (48%), Positives = 46/75 (61%)
Frame = +2 / +3
Query: 74 SFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXXLYCKTH 253
SF G KC CDKT + +D LT +YHK C HCKG + +Y+S + LYC+ H
Sbjct: 201 SFQGTTTKCNACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLANYNSFEGVLYCRPH 380
Query: 254 FEQLFKXTGSFSKNF 298
F+QLFK TGS K+F
Sbjct: 381 FDQLFKRTGSLDKSF 425
Score = 24.9 bits (48), Expect(2) = 3e-023
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +2 / +3
Query: 299 TPXXXSSDKXXLTRAPSKLSSAFSGTXDKXAAC 397
TP ++ K+SSAF+GT +K C
Sbjct: 432 TPKVVKPERNVGNENAIKVSSAFAGTREKCFGC 530
>gb|AV919448.1|AV919448 AV919448 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags6b09 3', mRNA sequence
Length = 687
Score = 72.5 bits (152), Expect(2) = 8e-022
Identities = 24/48 (50%), Positives = 32/48 (66%)
Frame = +2 / -3
Query: 155 IYHKTCXXXXHCKGXXSMCSYSSMDXXLYCKTHFEQLFKXTGSFSKNF 298
+YHK C HCKG + +Y+S + LYC+ HF+QLFK TGS K+F
Sbjct: 673 VYHKACFRCHHCKGTLKLANYNSFEGVLYCRPHFDQLFKRTGSLDKSF 530
Score = 50.1 bits (103), Expect(2) = 8e-022
Identities = 21/57 (36%), Positives = 28/57 (49%)
Frame = +2 / -3
Query: 299 TPXXXSSDKXXLTRAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKC 469
TP ++ K+SSAF+GT +K C KT YP +T+ YHK KC
Sbjct: 523 TPKVVKPERNVGNENAIKVSSAFAGTREKCFGCSKTVYPIERVTVNNTMYHKSCFKC 353
>gb|AV918472.1|AV918472 AV918472 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21c22 3', mRNA sequence
Length = 668
Score = 72.5 bits (152), Expect(2) = 8e-022
Identities = 24/48 (50%), Positives = 32/48 (66%)
Frame = +2 / -3
Query: 155 IYHKTCXXXXHCKGXXSMCSYSSMDXXLYCKTHFEQLFKXTGSFSKNF 298
+YHK C HCKG + +Y+S + LYC+ HF+QLFK TGS K+F
Sbjct: 663 VYHKACFRCHHCKGTLKLANYNSFEGVLYCRPHFDQLFKRTGSLDKSF 520
Score = 50.1 bits (103), Expect(2) = 8e-022
Identities = 21/57 (36%), Positives = 28/57 (49%)
Frame = +2 / -3
Query: 299 TPXXXSSDKXXLTRAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKC 469
TP ++ K+SSAF+GT +K C KT YP +T+ YHK KC
Sbjct: 513 TPKVVKPERNVGNENAIKVSSAFAGTREKCFGCSKTVYPIERVTVNNTMYHKSCFKC 343
>gb|BJ476245.1|BJ476245 BJ476245 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal33a06 3', mRNA sequence
Length = 688
Score = 62.5 bits (130), Expect(2) = 1e-021
Identities = 25/47 (53%), Positives = 29/47 (61%)
Frame = +2 / -2
Query: 332 LTRAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKCS 472
LTR+PSK + FSGT DK A C KT YP +T+ YHK KCS
Sbjct: 513 LTRSPSKAAGMFSGTQDKCATCGKTAYPLEKVTVEEKSYHKSCFKCS 373
Score = 59.3 bits (123), Expect(2) = 1e-021
Identities = 22/38 (57%), Positives = 26/38 (68%)
Frame = +2 / -2
Query: 185 HCKGXXSMCSYSSMDXXLYCKTHFEQLFKXTGSFSKNF 298
HCK S SYSS + YCK HF QLFK TGS++K+F
Sbjct: 675 HCKSTLSFSSYSSFEGVPYCKPHFAQLFKETGSYNKSF 562
>gb|BE216049.2|BE216049 HV_CEb0009E03f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0009E03f, mRNA sequence
Length = 652
Score = 62.5 bits (130), Expect(2) = 1e-021
Identities = 25/47 (53%), Positives = 29/47 (61%)
Frame = +2 / +1
Query: 332 LTRAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKCS 472
LTR+PSK + FSGT DK A C KT YP +T+ YHK KCS
Sbjct: 184 LTRSPSKAAGMFSGTQDKCATCGKTAYPLEKVTVEEKSYHKSCFKCS 324
Score = 59.3 bits (123), Expect(2) = 1e-021
Identities = 22/38 (57%), Positives = 26/38 (68%)
Frame = +2 / +1
Query: 185 HCKGXXSMCSYSSMDXXLYCKTHFEQLFKXTGSFSKNF 298
HCK S SYSS + YCK HF QLFK TGS++K+F
Sbjct: 22 HCKSTLSFSSYSSFEGVPYCKPHFAQLFKETGSYNKSF 135
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 148,554,775
Number of Sequences: 312970
Number of extensions: 1460069
Number of successful extensions: 32024
Number of sequences better than 1.0e-020: 58
length of database: 58,378,179
effective HSP length: 50
effective length of database: 42,729,679
effective search space used: 4871183406
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)