TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBF12h04.xg.3.2
(747 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence 116 1e-025
gb|BM369716.2|BM369716 EBem07_SQ004_G13_R embryo, 28 DPA, n... 116 1e-025
gb|BM444977.2|BM444977 EBem09_SQ007_B04_R embryo, 1 Day ger... 116 1e-025
gb|BQ767410.1|BQ767410 EBro08_SQ008_G23_R root, 3 week, dro... 116 1e-025
gb|BM445039.2|BM445039 EBem09_SQ007_E02_R embryo, 1 Day ger... 115 4e-025
gb|BF259270.3|BF259270 HVSMEf0018K10f Hordeum vulgare seedl... 114 7e-025
gb|AV926160.1|AV926160 AV926160 K. Sato unpublished cDNA li... 114 7e-025
gb|AV926168.1|AV926168 AV926168 K. Sato unpublished cDNA li... 114 7e-025
gb|AV931042.1|AV931042 AV931042 K. Sato unpublished cDNA li... 114 7e-025
gb|AV931049.1|AV931049 AV931049 K. Sato unpublished cDNA li... 114 7e-025
gb|AV932366.1|AV932366 AV932366 K. Sato unpublished cDNA li... 114 7e-025
gb|AJ434164.1|AJ434164 AJ434164 S00002 Hordeum vulgare subs... 114 7e-025
gb|BJ472967.1|BJ472967 BJ472967 K. Sato unpublished cDNA li... 114 7e-025
gb|BJ474219.1|BJ474219 BJ474219 K. Sato unpublished cDNA li... 114 7e-025
gb|BJ474749.1|BJ474749 BJ474749 K. Sato unpublished cDNA li... 114 7e-025
gb|BJ477128.1|BJ477128 BJ477128 K. Sato unpublished cDNA li... 114 7e-025
gb|BQ464042.1|BQ464042 HF01D02T HF Hordeum vulgare subsp. v... 114 7e-025
gb|BQ468022.1|BQ468022 HR01K24r HR Hordeum vulgare subsp. v... 114 7e-025
gb|BQ659646.1|BQ659646 HF01D02w HF Hordeum vulgare subsp. v... 114 7e-025
gb|BQ662132.1|BQ662132 HR01K24u HR Hordeum vulgare subsp. v... 114 7e-025
gb|BQ756972.1|BQ756972 EBem10_SQ002_F23_R embryo, 2 Day ger... 114 7e-025
gb|BU985377.1|BU985377 HF06P11r HF Hordeum vulgare subsp. v... 114 7e-025
gb|CA030460.1|CA030460 HX07C04r HX Hordeum vulgare subsp. v... 114 7e-025
gb|CA030746.1|CA030746 HX08A04r HX Hordeum vulgare subsp. v... 114 7e-025
gb|BM376417.1|BM376417 EBem05_SQ002_C18_R embryo, 14 DPA, n... 113 9e-025
gb|BM376821.1|BM376821 EBem05_SQ003_F09_R embryo, 14 DPA, n... 113 9e-025
gb|BM444210.1|BM444210 EBem09_SQ004_H19_R embryo, 1 Day ger... 113 9e-025
gb|AJ461506.1|AJ461506 AJ461506 S00002 Hordeum vulgare subs... 113 9e-025
gb|BQ739946.1|BQ739946 HB05F11 HB Hordeum vulgare subsp. vu... 113 9e-025
gb|BM376627.2|BM376627 EBem05_SQ002_M04_R embryo, 14 DPA, n... 113 9e-025
gb|BM376815.2|BM376815 EBem05_SQ003_F03_R embryo, 14 DPA, n... 113 9e-025
gb|BM445036.2|BM445036 EBem09_SQ007_D23_R embryo, 1 Day ger... 113 9e-025
gb|BI777316.2|BI777316 EBro03_SQ002_N17_R root, 3 week, wat... 113 9e-025
gb|BM370828.2|BM370828 EBro04_SQ002_G18_R root, 3 week, sal... 113 9e-025
gb|BI778091.2|BI778091 EBro07_SQ002_D07_R root, 3 week, red... 113 9e-025
gb|BM370438.2|BM370438 EBro08_SQ004_D19_R root, 3 week, dro... 113 9e-025
gb|BQ761384.1|BQ761384 EBro06_SQ001_J04_R root, 3 week, dro... 113 9e-025
gb|BQ763655.1|BQ763655 EBro03_SQ005_F03_R root, 3 week, wat... 113 9e-025
gb|BQ765241.1|BQ765241 EBro03_SQ006_J13_R root, 3 week, wat... 113 9e-025
gb|BQ766259.1|BQ766259 EBro08_SQ005_A14_R root, 3 week, dro... 113 9e-025
gb|BQ767130.1|BQ767130 EBro08_SQ008_F01_R root, 3 week, dro... 113 9e-025
gb|BQ767937.1|BQ767937 EBro08_SQ010_B10_R root, 3 week, dro... 113 9e-025
gb|CD662709.1|CD662709 UCRHV18_02de02_b1 Drought-stressed D... 113 9e-025
gb|AJ228957.1|AJ228957 AJ228957 Barley leaf, 8 day old seed... 113 1e-024
gb|BM375954.2|BM375954 EBem06_SQ004_O08_R embryo, 21 DPA, n... 112 2e-024
gb|CB875341.1|CB875341 HX08A04w HX Hordeum vulgare subsp. v... 112 2e-024
emb|AJ250663.2|HVU250663 Hordeum vulgare partial mRNA for p... 112 2e-024
gb|BF630148.2|BF630148 HVSMEb0008C01f Hordeum vulgare seedl... 111 5e-024
gb|BF629382.3|BF629382 HVSMEb0012B12f Hordeum vulgare seedl... 111 5e-024
gb|BF253985.3|BF253985 HVSMEf0002K21f Hordeum vulgare seedl... 111 5e-024
gb|BF255218.3|BF255218 HVSMEf0006E09f Hordeum vulgare seedl... 111 5e-024
gb|BM816647.1|BM816647 HB108E07_SK.ab1 HB Hordeum vulgare s... 111 5e-024
gb|BM816648.1|BM816648 HC114F06_SK.ab1 HC Hordeum vulgare s... 111 5e-024
gb|AJ461507.1|AJ461507 AJ461507 S00002 Hordeum vulgare subs... 111 5e-024
gb|BM372169.2|BM372169 EBro03_SQ004_D11_R root, 3 week, wat... 110 9e-024
gb|BQ762412.1|BQ762412 EBro01_SQ005_D20_R root, 3 week, hyd... 110 9e-024
gb|BQ662161.1|BQ662161 HR01N05u HR Hordeum vulgare subsp. v... 110 1e-023
gb|BF253673.3|BF253673 HVSMEf0001M20f Hordeum vulgare seedl... 109 2e-023
gb|AJ461505.1|AJ461505 AJ461505 S00002 Hordeum vulgare subs... 109 2e-023
gb|BM370287.2|BM370287 EBro08_SQ003_L18_R root, 3 week, dro... 106 2e-022
gb|AV934838.1|AV934838 AV934838 K. Sato unpublished cDNA li... 102 3e-021
gb|BM443710.1|BM443710 EBem09_SQ001_E01_R embryo, 1 Day ger... 101 4e-021
gb|BF259802.2|BF259802 HVSMEf0020E22f Hordeum vulgare seedl... 100 7e-021
gb|BF257305.1|BF257305 HVSMEf0012H21f Hordeum vulgare seedl... 100 9e-021
gb|BE231068.2|BE231068 HVSMEg0016F01f Hordeum vulgare pre-a... 100 9e-021
gb|BG300496.2|BG300496 HVSMEb0017E05f Hordeum vulgare seedl... 100 9e-021
gb|BF258541.3|BF258541 HVSMEf0016A06f Hordeum vulgare seedl... 100 9e-021
>gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence
Length = 261265
Score = 116 bits (249), Expect = 1e-025
Identities = 45/61 (73%), Positives = 56/61 (91%)
Frame = +1 / +2
Query: 331 KTSWPEVVGLSVEDAKKVILKDKPDADIVVLPVGSVVTADYRPNRVRIFVDIVAQTPHIG 510
KTSWPEVVGL++++AK++ILKDKP+ADIVV+PVGS VT D+RPNRVRIFV V +TPH+G
Sbjct: 206990 KTSWPEVVGLTIKEAKEIILKDKPEADIVVVPVGSAVTEDFRPNRVRIFVGTVVETPHVG 207169
Query: 511 * 513
*
Sbjct: 207170 * 207172
Score = 111 bits (237), Expect = 5e-024
Identities = 46/61 (75%), Positives = 52/61 (85%)
Frame = +1 / -1
Query: 331 KTSWPEVVGLSVEDAKKVILKDKPDADIVVLPVGSVVTADYRPNRVRIFVDIVAQTPHIG 510
KTSWPEVVG S+E+AK++ILKD P+ADIVVLP GS VT D+R NRVRIFVD VA PHIG
Sbjct: 220792 KTSWPEVVGKSIEEAKEIILKDMPEADIVVLPAGSPVTLDFRTNRVRIFVDTVASIPHIG 220613
Query: 511 * 513
*
Sbjct: 220612 * 220610
Score = 105 bits (223), Expect = 4e-022
Identities = 43/61 (70%), Positives = 51/61 (83%)
Frame = +1 / -1
Query: 331 KTSWPEVVGLSVEDAKKVILKDKPDADIVVLPVGSVVTADYRPNRVRIFVDIVAQTPHIG 510
K+SWPE+VG S+EDA++VILKD P+ADI VLP SVV AD+R NRVR+ VD VA TPHIG
Sbjct: 223957 KSSWPELVGKSIEDAREVILKDMPEADIKVLPANSVVAADWRSNRVRVLVDTVATTPHIG 223778
Query: 511 * 513
*
Sbjct: 223777 * 223775
Score = 100 bits (213), Expect = 9e-021
Identities = 42/61 (68%), Positives = 50/61 (81%)
Frame = +1 / -2
Query: 331 KTSWPEVVGLSVEDAKKVILKDKPDADIVVLPVGSVVTADYRPNRVRIFVDIVAQTPHIG 510
K+SWPE+VG S+EDA++VILKD P+ DI V P SVV+AD+R NRVRI VD VA TPHIG
Sbjct: 217722 KSSWPELVGKSIEDAREVILKDMPEVDIEVHPTDSVVSADWRSNRVRILVDTVATTPHIG 217543
Query: 511 * 513
*
Sbjct: 217542 * 217540
>gb|BM369716.2|BM369716 EBem07_SQ004_G13_R embryo, 28 DPA, no treatment, cv Optic, EBem07
Hordeum vulgare subsp. vulgare cDNA clone
EBem07_SQ004_G13 5', mRNA sequence
Length = 419
Score = 116 bits (248), Expect = 1e-025
Identities = 49/61 (80%), Positives = 53/61 (86%)
Frame = +1 / +2
Query: 331 KTSWPEVVGLSVEDAKKVILKDKPDADIVVLPVGSVVTADYRPNRVRIFVDIVAQTPHIG 510
KTSWPEVVG S+E+AK+VILKD PDADIVVLP GS VT D+R NRVRIFVD VA TPHIG
Sbjct: 59 KTSWPEVVGKSIEEAKEVILKDMPDADIVVLPAGSPVTLDFRTNRVRIFVDTVASTPHIG 238
Query: 511 * 513
*
Sbjct: 239 * 241
>gb|BM444977.2|BM444977 EBem09_SQ007_B04_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ007_B04 5', mRNA sequence
Length = 414
Score = 116 bits (248), Expect = 1e-025
Identities = 49/61 (80%), Positives = 53/61 (86%)
Frame = +1 / +3
Query: 331 KTSWPEVVGLSVEDAKKVILKDKPDADIVVLPVGSVVTADYRPNRVRIFVDIVAQTPHIG 510
KTSWPEVVG S+E+AK+VILKD PDADIVVLP GS VT D+R NRVRIFVD VA TPHIG
Sbjct: 93 KTSWPEVVGKSIEEAKEVILKDMPDADIVVLPAGSPVTLDFRTNRVRIFVDTVASTPHIG 272
Query: 511 * 513
*
Sbjct: 273 * 275
>gb|BQ767410.1|BQ767410 EBro08_SQ008_G23_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ008_G23 5', mRNA sequence
Length = 413
Score = 116 bits (248), Expect = 1e-025
Identities = 49/61 (80%), Positives = 53/61 (86%)
Frame = +1 / +1
Query: 331 KTSWPEVVGLSVEDAKKVILKDKPDADIVVLPVGSVVTADYRPNRVRIFVDIVAQTPHIG 510
KTSWPEVVG S+E+AK+VILKD PDADIVVLP GS VT D+R NRVRIFVD VA TPHIG
Sbjct: 76 KTSWPEVVGKSIEEAKEVILKDMPDADIVVLPAGSPVTLDFRTNRVRIFVDTVASTPHIG 255
Query: 511 * 513
*
Sbjct: 256 * 258
>gb|BM445039.2|BM445039 EBem09_SQ007_E02_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ007_E02 5', mRNA sequence
Length = 321
Score = 115 bits (245), Expect = 4e-025
Identities = 49/61 (80%), Positives = 53/61 (86%)
Frame = +1 / +3
Query: 331 KTSWPEVVGLSVEDAKKVILKDKPDADIVVLPVGSVVTADYRPNRVRIFVDIVAQTPHIG 510
KTSWPEVVG S+E+AK+VILKD PDADIVVLP GS VT D+R NRVRIFVD VA TPHIG
Sbjct: 84 KTSWPEVVGKSIEEAKEVILKDMPDADIVVLPAGSPVTLDFRTNRVRIFVDTVAFTPHIG 263
Query: 511 * 513
*
Sbjct: 264 * 266
>gb|BF259270.3|BF259270 HVSMEf0018K10f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0018K10f, mRNA sequence
Length = 402
Score = 114 bits (243), Expect = 7e-025
Identities = 47/61 (77%), Positives = 53/61 (86%)
Frame = +1 / +2
Query: 331 KTSWPEVVGLSVEDAKKVILKDKPDADIVVLPVGSVVTADYRPNRVRIFVDIVAQTPHIG 510
KTSWPEVVG S+E+AK++ILKD PDADI+VLP GS VT D+R NRVRIFVD VA TPHIG
Sbjct: 92 KTSWPEVVGKSIEEAKEIILKDMPDADILVLPAGSPVTLDFRSNRVRIFVDTVAYTPHIG 271
Query: 511 * 513
*
Sbjct: 272 * 274
>gb|AV926160.1|AV926160 AV926160 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd18f06 5', mRNA sequence
Length = 533
Score = 114 bits (243), Expect = 7e-025
Identities = 47/61 (77%), Positives = 53/61 (86%)
Frame = +1 / +2
Query: 331 KTSWPEVVGLSVEDAKKVILKDKPDADIVVLPVGSVVTADYRPNRVRIFVDIVAQTPHIG 510
KTSWPEVVG S+E+AK++ILKD P+ADIVVLP GS VT D+R NRVRIFVD VA TPHIG
Sbjct: 227 KTSWPEVVGKSIEEAKEIILKDMPEADIVVLPAGSPVTLDFRTNRVRIFVDTVASTPHIG 406
Query: 511 * 513
*
Sbjct: 407 * 409
>gb|AV926168.1|AV926168 AV926168 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd18f17 5', mRNA sequence
Length = 521
Score = 114 bits (243), Expect = 7e-025
Identities = 47/61 (77%), Positives = 53/61 (86%)
Frame = +1 / +2
Query: 331 KTSWPEVVGLSVEDAKKVILKDKPDADIVVLPVGSVVTADYRPNRVRIFVDIVAQTPHIG 510
KTSWPEVVG S+E+AK++ILKD P+ADIVVLP GS VT D+R NRVRIFVD VA TPHIG
Sbjct: 215 KTSWPEVVGKSIEEAKEIILKDMPEADIVVLPAGSPVTLDFRTNRVRIFVDTVASTPHIG 394
Query: 511 * 513
*
Sbjct: 395 * 397
>gb|AV931042.1|AV931042 AV931042 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd18f06 3', mRNA sequence
Length = 502
Score = 114 bits (243), Expect = 7e-025
Identities = 47/61 (77%), Positives = 53/61 (86%)
Frame = +1 / -2
Query: 331 KTSWPEVVGLSVEDAKKVILKDKPDADIVVLPVGSVVTADYRPNRVRIFVDIVAQTPHIG 510
KTSWPEVVG S+E+AK++ILKD P+ADIVVLP GS VT D+R NRVRIFVD VA TPHIG
Sbjct: 288 KTSWPEVVGKSIEEAKEIILKDMPEADIVVLPAGSPVTLDFRTNRVRIFVDTVASTPHIG 109
Query: 511 * 513
*
Sbjct: 108 * 106
>gb|AV931049.1|AV931049 AV931049 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd18f17 3', mRNA sequence
Length = 503
Score = 114 bits (243), Expect = 7e-025
Identities = 47/61 (77%), Positives = 53/61 (86%)
Frame = +1 / -2
Query: 331 KTSWPEVVGLSVEDAKKVILKDKPDADIVVLPVGSVVTADYRPNRVRIFVDIVAQTPHIG 510
KTSWPEVVG S+E+AK++ILKD P+ADIVVLP GS VT D+R NRVRIFVD VA TPHIG
Sbjct: 289 KTSWPEVVGKSIEEAKEIILKDMPEADIVVLPAGSPVTLDFRTNRVRIFVDTVASTPHIG 110
Query: 511 * 513
*
Sbjct: 109 * 107
>gb|AV932366.1|AV932366 AV932366 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal3f06 5', mRNA sequence
Length = 387
Score = 114 bits (243), Expect = 7e-025
Identities = 47/61 (77%), Positives = 53/61 (86%)
Frame = +1 / +1
Query: 331 KTSWPEVVGLSVEDAKKVILKDKPDADIVVLPVGSVVTADYRPNRVRIFVDIVAQTPHIG 510
KTSWPEVVG S+E+AK++ILKD P+ADIVVLP GS VT D+R NRVRIFVD VA TPHIG
Sbjct: 40 KTSWPEVVGKSIEEAKEIILKDMPEADIVVLPAGSPVTLDFRTNRVRIFVDTVASTPHIG 219
Query: 511 * 513
*
Sbjct: 220 * 222
>gb|AJ434164.1|AJ434164 AJ434164 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200082G06F1, mRNA sequence
Length = 449
Score = 114 bits (243), Expect = 7e-025
Identities = 47/61 (77%), Positives = 53/61 (86%)
Frame = +1 / +3
Query: 331 KTSWPEVVGLSVEDAKKVILKDKPDADIVVLPVGSVVTADYRPNRVRIFVDIVAQTPHIG 510
KTSWPEVVG S+E+AK++ILKD P+ADIVVLP GS VT D+R NRVRIFVD VA TPHIG
Sbjct: 51 KTSWPEVVGKSIEEAKEIILKDMPEADIVVLPAGSPVTLDFRTNRVRIFVDTVASTPHIG 230
Query: 511 * 513
*
Sbjct: 231 * 233
>gb|BJ472967.1|BJ472967 BJ472967 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal40b03 5', mRNA sequence
Length = 402
Score = 114 bits (243), Expect = 7e-025
Identities = 47/61 (77%), Positives = 53/61 (86%)
Frame = +1 / +2
Query: 331 KTSWPEVVGLSVEDAKKVILKDKPDADIVVLPVGSVVTADYRPNRVRIFVDIVAQTPHIG 510
KTSWPEVVG S+E+AK++ILKD P+ADIVVLP GS VT D+R NRVRIFVD VA TPHIG
Sbjct: 56 KTSWPEVVGKSIEEAKEIILKDMPEADIVVLPAGSPVTLDFRTNRVRIFVDTVASTPHIG 235
Query: 511 * 513
*
Sbjct: 236 * 238
>gb|BJ474219.1|BJ474219 BJ474219 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal19k07 3', mRNA sequence
Length = 366
Score = 114 bits (243), Expect = 7e-025
Identities = 47/61 (77%), Positives = 53/61 (86%)
Frame = +1 / -2
Query: 331 KTSWPEVVGLSVEDAKKVILKDKPDADIVVLPVGSVVTADYRPNRVRIFVDIVAQTPHIG 510
KTSWPEVVG S+E+AK++ILKD P+ADIVVLP GS VT D+R NRVRIFVD VA TPHIG
Sbjct: 311 KTSWPEVVGKSIEEAKEIILKDMPEADIVVLPAGSPVTLDFRTNRVRIFVDTVASTPHIG 132
Query: 511 * 513
*
Sbjct: 131 * 129
>gb|BJ474749.1|BJ474749 BJ474749 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal22b17 3', mRNA sequence
Length = 378
Score = 114 bits (243), Expect = 7e-025
Identities = 47/61 (77%), Positives = 53/61 (86%)
Frame = +1 / -2
Query: 331 KTSWPEVVGLSVEDAKKVILKDKPDADIVVLPVGSVVTADYRPNRVRIFVDIVAQTPHIG 510
KTSWPEVVG S+E+AK++ILKD P+ADIVVLP GS VT D+R NRVRIFVD VA TPHIG
Sbjct: 323 KTSWPEVVGKSIEEAKEIILKDMPEADIVVLPAGSPVTLDFRTNRVRIFVDTVASTPHIG 144
Query: 511 * 513
*
Sbjct: 143 * 141
>gb|BJ477128.1|BJ477128 BJ477128 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal40b03 3', mRNA sequence
Length = 378
Score = 114 bits (243), Expect = 7e-025
Identities = 47/61 (77%), Positives = 53/61 (86%)
Frame = +1 / -2
Query: 331 KTSWPEVVGLSVEDAKKVILKDKPDADIVVLPVGSVVTADYRPNRVRIFVDIVAQTPHIG 510
KTSWPEVVG S+E+AK++ILKD P+ADIVVLP GS VT D+R NRVRIFVD VA TPHIG
Sbjct: 323 KTSWPEVVGKSIEEAKEIILKDMPEADIVVLPAGSPVTLDFRTNRVRIFVDTVASTPHIG 144
Query: 511 * 513
*
Sbjct: 143 * 141
>gb|BQ464042.1|BQ464042 HF01D02T HF Hordeum vulgare subsp. vulgare cDNA clone HF01D02
5-PRIME, mRNA sequence
Length = 399
Score = 114 bits (243), Expect = 7e-025
Identities = 47/61 (77%), Positives = 53/61 (86%)
Frame = +1 / +3
Query: 331 KTSWPEVVGLSVEDAKKVILKDKPDADIVVLPVGSVVTADYRPNRVRIFVDIVAQTPHIG 510
KTSWPEVVG S+E+AK++ILKD P+ADIVVLP GS VT D+R NRVRIFVD VA TPHIG
Sbjct: 69 KTSWPEVVGKSIEEAKEIILKDMPEADIVVLPAGSPVTLDFRTNRVRIFVDTVASTPHIG 248
Query: 511 * 513
*
Sbjct: 249 * 251
>gb|BQ468022.1|BQ468022 HR01K24r HR Hordeum vulgare subsp. vulgare cDNA clone HR01K24
5-PRIME, mRNA sequence
Length = 367
Score = 114 bits (243), Expect = 7e-025
Identities = 47/61 (77%), Positives = 53/61 (86%)
Frame = +1 / +2
Query: 331 KTSWPEVVGLSVEDAKKVILKDKPDADIVVLPVGSVVTADYRPNRVRIFVDIVAQTPHIG 510
KTSWPEVVG S+E+AK++ILKD P+ADIVVLP GS VT D+R NRVRIFVD VA TPHIG
Sbjct: 50 KTSWPEVVGKSIEEAKEIILKDMPEADIVVLPAGSPVTLDFRTNRVRIFVDTVASTPHIG 229
Query: 511 * 513
*
Sbjct: 230 * 232
>gb|BQ659646.1|BQ659646 HF01D02w HF Hordeum vulgare subsp. vulgare cDNA clone HF01D02
3-PRIME, mRNA sequence
Length = 372
Score = 114 bits (243), Expect = 7e-025
Identities = 47/61 (77%), Positives = 53/61 (86%)
Frame = +1 / -3
Query: 331 KTSWPEVVGLSVEDAKKVILKDKPDADIVVLPVGSVVTADYRPNRVRIFVDIVAQTPHIG 510
KTSWPEVVG S+E+AK++ILKD P+ADIVVLP GS VT D+R NRVRIFVD VA TPHIG
Sbjct: 337 KTSWPEVVGKSIEEAKEIILKDMPEADIVVLPAGSPVTLDFRTNRVRIFVDTVASTPHIG 158
Query: 511 * 513
*
Sbjct: 157 * 155
>gb|BQ662132.1|BQ662132 HR01K24u HR Hordeum vulgare subsp. vulgare cDNA clone HR01K24
3-PRIME, mRNA sequence
Length = 367
Score = 114 bits (243), Expect = 7e-025
Identities = 47/61 (77%), Positives = 53/61 (86%)
Frame = +1 / -2
Query: 331 KTSWPEVVGLSVEDAKKVILKDKPDADIVVLPVGSVVTADYRPNRVRIFVDIVAQTPHIG 510
KTSWPEVVG S+E+AK++ILKD P+ADIVVLP GS VT D+R NRVRIFVD VA TPHIG
Sbjct: 318 KTSWPEVVGKSIEEAKEIILKDMPEADIVVLPAGSPVTLDFRTNRVRIFVDTVASTPHIG 139
Query: 511 * 513
*
Sbjct: 138 * 136
>gb|BQ756972.1|BQ756972 EBem10_SQ002_F23_R embryo, 2 Day germination, no treatment, cv
Optic, EBem10 Hordeum vulgare subsp. vulgare cDNA clone
EBem10_SQ002_F23 5', mRNA sequence
Length = 399
Score = 114 bits (243), Expect = 7e-025
Identities = 47/61 (77%), Positives = 53/61 (86%)
Frame = +1 / +1
Query: 331 KTSWPEVVGLSVEDAKKVILKDKPDADIVVLPVGSVVTADYRPNRVRIFVDIVAQTPHIG 510
KTSWPEVVG S+E+AK++ILKD P+ADIVVLP GS VT D+R NRVRIFVD VA TPHIG
Sbjct: 70 KTSWPEVVGKSIEEAKEIILKDMPEADIVVLPAGSPVTLDFRTNRVRIFVDTVASTPHIG 249
Query: 511 * 513
*
Sbjct: 250 * 252
>gb|BU985377.1|BU985377 HF06P11r HF Hordeum vulgare subsp. vulgare cDNA clone HF06P11
5-PRIME, mRNA sequence
Length = 397
Score = 114 bits (243), Expect = 7e-025
Identities = 47/61 (77%), Positives = 53/61 (86%)
Frame = +1 / +2
Query: 331 KTSWPEVVGLSVEDAKKVILKDKPDADIVVLPVGSVVTADYRPNRVRIFVDIVAQTPHIG 510
KTSWPEVVG S+E+AK++ILKD P+ADIVVLP GS VT D+R NRVRIFVD VA TPHIG
Sbjct: 62 KTSWPEVVGKSIEEAKEIILKDMPEADIVVLPAGSPVTLDFRTNRVRIFVDTVASTPHIG 241
Query: 511 * 513
*
Sbjct: 242 * 244
>gb|CA030460.1|CA030460 HX07C04r HX Hordeum vulgare subsp. vulgare cDNA clone HX07C04
5-PRIME, mRNA sequence
Length = 396
Score = 114 bits (243), Expect = 7e-025
Identities = 47/61 (77%), Positives = 53/61 (86%)
Frame = +1 / +3
Query: 331 KTSWPEVVGLSVEDAKKVILKDKPDADIVVLPVGSVVTADYRPNRVRIFVDIVAQTPHIG 510
KTSWPEVVG S+E+AK++ILKD P+ADIVVLP GS VT D+R NRVRIFVD VA TPHIG
Sbjct: 60 KTSWPEVVGKSIEEAKEIILKDMPEADIVVLPAGSPVTLDFRTNRVRIFVDTVASTPHIG 239
Query: 511 * 513
*
Sbjct: 240 * 242
>gb|CA030746.1|CA030746 HX08A04r HX Hordeum vulgare subsp. vulgare cDNA clone HX08A04
5-PRIME, mRNA sequence
Length = 416
Score = 114 bits (243), Expect = 7e-025
Identities = 47/61 (77%), Positives = 53/61 (86%)
Frame = +1 / +2
Query: 331 KTSWPEVVGLSVEDAKKVILKDKPDADIVVLPVGSVVTADYRPNRVRIFVDIVAQTPHIG 510
KTSWPEVVG S+E+AK++ILKD P+ADIVVLP GS VT D+R NRVRIFVD VA TPHIG
Sbjct: 80 KTSWPEVVGKSIEEAKEIILKDMPEADIVVLPAGSPVTLDFRTNRVRIFVDTVASTPHIG 259
Query: 511 * 513
*
Sbjct: 260 * 262
>gb|BM376417.1|BM376417 EBem05_SQ002_C18_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ002_C18 5', mRNA sequence
Length = 425
Score = 113 bits (242), Expect = 9e-025
Identities = 47/61 (77%), Positives = 53/61 (86%)
Frame = +1 / +1
Query: 331 KTSWPEVVGLSVEDAKKVILKDKPDADIVVLPVGSVVTADYRPNRVRIFVDIVAQTPHIG 510
KTSWPEVVG S+E+AK++ILKD P+ADIVVLP GS VT D+R NRVRIFVD VA TPHIG
Sbjct: 76 KTSWPEVVGKSIEEAKEIILKDMPEADIVVLPAGSPVTMDFRSNRVRIFVDTVATTPHIG 255
Query: 511 * 513
*
Sbjct: 256 * 258
>gb|BM376821.1|BM376821 EBem05_SQ003_F09_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ003_F09 5', mRNA sequence
Length = 432
Score = 113 bits (242), Expect = 9e-025
Identities = 47/61 (77%), Positives = 53/61 (86%)
Frame = +1 / +3
Query: 331 KTSWPEVVGLSVEDAKKVILKDKPDADIVVLPVGSVVTADYRPNRVRIFVDIVAQTPHIG 510
KTSWPEVVG S+E+AK++ILKD P+ADIVVLP GS VT D+R NRVRIFVD VA TPHIG
Sbjct: 93 KTSWPEVVGKSIEEAKEIILKDMPEADIVVLPAGSPVTMDFRSNRVRIFVDTVATTPHIG 272
Query: 511 * 513
*
Sbjct: 273 * 275
>gb|BM444210.1|BM444210 EBem09_SQ004_H19_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ004_H19 5', mRNA sequence
Length = 432
Score = 113 bits (242), Expect = 9e-025
Identities = 47/61 (77%), Positives = 53/61 (86%)
Frame = +1 / +1
Query: 331 KTSWPEVVGLSVEDAKKVILKDKPDADIVVLPVGSVVTADYRPNRVRIFVDIVAQTPHIG 510
KTSWPEVVG S+E+AK++ILKD P+ADIVVLP GS VT D+R NRVRIFVD VA TPHIG
Sbjct: 76 KTSWPEVVGKSIEEAKEIILKDMPEADIVVLPAGSPVTMDFRSNRVRIFVDTVATTPHIG 255
Query: 511 * 513
*
Sbjct: 256 * 258
>gb|AJ461506.1|AJ461506 AJ461506 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200026G12F2, mRNA sequence
Length = 240
Score = 113 bits (242), Expect = 9e-025
Identities = 46/60 (76%), Positives = 52/60 (86%)
Frame = +1 / +3
Query: 331 KTSWPEVVGLSVEDAKKVILKDKPDADIVVLPVGSVVTADYRPNRVRIFVDIVAQTPHIG 510
KTSWPEVVG S+E+AK++ILKD P+ADIVVLP GS VT D+R NRVRIFVD VA TPHIG
Sbjct: 60 KTSWPEVVGKSIEEAKEIILKDMPEADIVVLPAGSPVTLDFRTNRVRIFVDTVASTPHIG 239
>gb|BQ739946.1|BQ739946 HB05F11 HB Hordeum vulgare subsp. vulgare cDNA clone HB05F11
similar to putative proteinase inhibitor [Hordeum
vulgare], mRNA sequence
Length = 408
Score = 113 bits (242), Expect = 9e-025
Identities = 47/61 (77%), Positives = 53/61 (86%)
Frame = +1 / +1
Query: 331 KTSWPEVVGLSVEDAKKVILKDKPDADIVVLPVGSVVTADYRPNRVRIFVDIVAQTPHIG 510
KTSWPEVVG S+E+AK++ILKD P+ADIVVLP GS VT D+R NRVRIFVD VA TPHIG
Sbjct: 49 KTSWPEVVGKSIEEAKEIILKDMPEADIVVLPAGSPVTMDFRSNRVRIFVDTVATTPHIG 228
Query: 511 * 513
*
Sbjct: 229 * 231
>gb|BM376627.2|BM376627 EBem05_SQ002_M04_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ002_M04 5', mRNA sequence
Length = 465
Score = 113 bits (242), Expect = 9e-025
Identities = 47/61 (77%), Positives = 53/61 (86%)
Frame = +1 / +1
Query: 331 KTSWPEVVGLSVEDAKKVILKDKPDADIVVLPVGSVVTADYRPNRVRIFVDIVAQTPHIG 510
KTSWPEVVG S+E+AK++ILKD P+ADIVVLP GS VT D+R NRVRIFVD VA TPHIG
Sbjct: 88 KTSWPEVVGKSIEEAKEIILKDMPEADIVVLPAGSPVTMDFRSNRVRIFVDTVATTPHIG 267
Query: 511 * 513
*
Sbjct: 268 * 270
>gb|BM376815.2|BM376815 EBem05_SQ003_F03_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ003_F03 5', mRNA sequence
Length = 436
Score = 113 bits (242), Expect = 9e-025
Identities = 47/61 (77%), Positives = 53/61 (86%)
Frame = +1 / +3
Query: 331 KTSWPEVVGLSVEDAKKVILKDKPDADIVVLPVGSVVTADYRPNRVRIFVDIVAQTPHIG 510
KTSWPEVVG S+E+AK++ILKD P+ADIVVLP GS VT D+R NRVRIFVD VA TPHIG
Sbjct: 93 KTSWPEVVGKSIEEAKEIILKDMPEADIVVLPAGSPVTMDFRSNRVRIFVDTVATTPHIG 272
Query: 511 * 513
*
Sbjct: 273 * 275
>gb|BM445036.2|BM445036 EBem09_SQ007_D23_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ007_D23 5', mRNA sequence
Length = 411
Score = 113 bits (242), Expect = 9e-025
Identities = 47/61 (77%), Positives = 53/61 (86%)
Frame = +1 / +1
Query: 331 KTSWPEVVGLSVEDAKKVILKDKPDADIVVLPVGSVVTADYRPNRVRIFVDIVAQTPHIG 510
KTSWPEVVG S+E+AK++ILKD P+ADIVVLP GS VT D+R NRVRIFVD VA TPHIG
Sbjct: 76 KTSWPEVVGKSIEEAKEIILKDMPEADIVVLPAGSPVTMDFRSNRVRIFVDTVATTPHIG 255
Query: 511 * 513
*
Sbjct: 256 * 258
>gb|BI777316.2|BI777316 EBro03_SQ002_N17_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ002_N17 5', mRNA sequence
Length = 432
Score = 113 bits (242), Expect = 9e-025
Identities = 47/61 (77%), Positives = 53/61 (86%)
Frame = +1 / +2
Query: 331 KTSWPEVVGLSVEDAKKVILKDKPDADIVVLPVGSVVTADYRPNRVRIFVDIVAQTPHIG 510
KTSWPEVVG S+E+AK++ILKD P+ADIVVLP GS VT D+R NRVRIFVD VA TPHIG
Sbjct: 68 KTSWPEVVGKSIEEAKEIILKDMPEADIVVLPAGSPVTMDFRSNRVRIFVDTVATTPHIG 247
Query: 511 * 513
*
Sbjct: 248 * 250
>gb|BM370828.2|BM370828 EBro04_SQ002_G18_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ002_G18 5', mRNA sequence
Length = 387
Score = 113 bits (242), Expect = 9e-025
Identities = 48/61 (78%), Positives = 52/61 (85%)
Frame = +1 / +2
Query: 331 KTSWPEVVGLSVEDAKKVILKDKPDADIVVLPVGSVVTADYRPNRVRIFVDIVAQTPHIG 510
KTSWPEVVG S+E+AK+VILKD PDADIVVLP GS VT D+ NRVRIFVD VA TPHIG
Sbjct: 77 KTSWPEVVGKSIEEAKEVILKDMPDADIVVLPAGSPVTLDFTTNRVRIFVDTVASTPHIG 256
Query: 511 * 513
*
Sbjct: 257 * 259
>gb|BI778091.2|BI778091 EBro07_SQ002_D07_R root, 3 week, reduced light, cv Optic, EBro07
Hordeum vulgare subsp. vulgare cDNA clone
EBro07_SQ002_D07 5', mRNA sequence
Length = 473
Score = 113 bits (242), Expect = 9e-025
Identities = 47/61 (77%), Positives = 53/61 (86%)
Frame = +1 / +3
Query: 331 KTSWPEVVGLSVEDAKKVILKDKPDADIVVLPVGSVVTADYRPNRVRIFVDIVAQTPHIG 510
KTSWPEVVG S+E+AK++ILKD P+ADIVVLP GS VT D+R NRVRIFVD VA TPHIG
Sbjct: 93 KTSWPEVVGKSIEEAKEIILKDMPEADIVVLPAGSPVTMDFRSNRVRIFVDTVATTPHIG 272
Query: 511 * 513
*
Sbjct: 273 * 275
>gb|BM370438.2|BM370438 EBro08_SQ004_D19_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ004_D19 5', mRNA sequence
Length = 448
Score = 113 bits (242), Expect = 9e-025
Identities = 47/61 (77%), Positives = 53/61 (86%)
Frame = +1 / +2
Query: 331 KTSWPEVVGLSVEDAKKVILKDKPDADIVVLPVGSVVTADYRPNRVRIFVDIVAQTPHIG 510
KTSWPEVVG S+E+AK++ILKD P+ADIVVLP GS VT D+R NRVRIFVD VA TPHIG
Sbjct: 71 KTSWPEVVGKSIEEAKEIILKDMPEADIVVLPAGSPVTMDFRSNRVRIFVDTVATTPHIG 250
Query: 511 * 513
*
Sbjct: 251 * 253
>gb|BQ761384.1|BQ761384 EBro06_SQ001_J04_R root, 3 week, drought-stressed, cv Optic, EBro06
Hordeum vulgare subsp. vulgare cDNA clone
EBro06_SQ001_J04 5', mRNA sequence
Length = 429
Score = 113 bits (242), Expect = 9e-025
Identities = 47/61 (77%), Positives = 53/61 (86%)
Frame = +1 / +1
Query: 331 KTSWPEVVGLSVEDAKKVILKDKPDADIVVLPVGSVVTADYRPNRVRIFVDIVAQTPHIG 510
KTSWPEVVG S+E+AK++ILKD P+ADIVVLP GS VT D+R NRVRIFVD VA TPHIG
Sbjct: 88 KTSWPEVVGKSIEEAKEIILKDMPEADIVVLPAGSPVTMDFRSNRVRIFVDTVATTPHIG 267
Query: 511 * 513
*
Sbjct: 268 * 270
>gb|BQ763655.1|BQ763655 EBro03_SQ005_F03_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ005_F03 5', mRNA sequence
Length = 463
Score = 113 bits (242), Expect = 9e-025
Identities = 47/61 (77%), Positives = 53/61 (86%)
Frame = +1 / +1
Query: 331 KTSWPEVVGLSVEDAKKVILKDKPDADIVVLPVGSVVTADYRPNRVRIFVDIVAQTPHIG 510
KTSWPEVVG S+E+AK++ILKD P+ADIVVLP GS VT D+R NRVRIFVD VA TPHIG
Sbjct: 103 KTSWPEVVGKSIEEAKEIILKDMPEADIVVLPAGSPVTMDFRSNRVRIFVDTVATTPHIG 282
Query: 511 * 513
*
Sbjct: 283 * 285
>gb|BQ765241.1|BQ765241 EBro03_SQ006_J13_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ006_J13 5', mRNA sequence
Length = 436
Score = 113 bits (242), Expect = 9e-025
Identities = 47/61 (77%), Positives = 53/61 (86%)
Frame = +1 / +2
Query: 331 KTSWPEVVGLSVEDAKKVILKDKPDADIVVLPVGSVVTADYRPNRVRIFVDIVAQTPHIG 510
KTSWPEVVG S+E+AK++ILKD P+ADIVVLP GS VT D+R NRVRIFVD VA TPHIG
Sbjct: 68 KTSWPEVVGKSIEEAKEIILKDMPEADIVVLPAGSPVTMDFRSNRVRIFVDTVATTPHIG 247
Query: 511 * 513
*
Sbjct: 248 * 250
>gb|BQ766259.1|BQ766259 EBro08_SQ005_A14_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ005_A14 5', mRNA sequence
Length = 566
Score = 113 bits (242), Expect = 9e-025
Identities = 47/61 (77%), Positives = 53/61 (86%)
Frame = +1 / +1
Query: 331 KTSWPEVVGLSVEDAKKVILKDKPDADIVVLPVGSVVTADYRPNRVRIFVDIVAQTPHIG 510
KTSWPEVVG S+E+AK++ILKD P+ADIVVLP GS VT D+R NRVRIFVD VA TPHIG
Sbjct: 103 KTSWPEVVGKSIEEAKEIILKDMPEADIVVLPAGSPVTMDFRSNRVRIFVDTVATTPHIG 282
Query: 511 * 513
*
Sbjct: 283 * 285
>gb|BQ767130.1|BQ767130 EBro08_SQ008_F01_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ008_F01 5', mRNA sequence
Length = 430
Score = 113 bits (242), Expect = 9e-025
Identities = 47/61 (77%), Positives = 53/61 (86%)
Frame = +1 / +3
Query: 331 KTSWPEVVGLSVEDAKKVILKDKPDADIVVLPVGSVVTADYRPNRVRIFVDIVAQTPHIG 510
KTSWPEVVG S+E+AK++ILKD P+ADIVVLP GS VT D+R NRVRIFVD VA TPHIG
Sbjct: 87 KTSWPEVVGKSIEEAKEIILKDMPEADIVVLPAGSPVTMDFRSNRVRIFVDTVATTPHIG 266
Query: 511 * 513
*
Sbjct: 267 * 269
>gb|BQ767937.1|BQ767937 EBro08_SQ010_B10_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ010_B10 5', mRNA sequence
Length = 402
Score = 113 bits (242), Expect = 9e-025
Identities = 47/61 (77%), Positives = 53/61 (86%)
Frame = +1 / +3
Query: 331 KTSWPEVVGLSVEDAKKVILKDKPDADIVVLPVGSVVTADYRPNRVRIFVDIVAQTPHIG 510
KTSWPEVVG S+E+AK++ILKD P+ADIVVLP GS VT D+R NRVRIFVD VA TPHIG
Sbjct: 93 KTSWPEVVGKSIEEAKEIILKDMPEADIVVLPAGSPVTMDFRSNRVRIFVDTVATTPHIG 272
Query: 511 * 513
*
Sbjct: 273 * 275
>gb|CD662709.1|CD662709 UCRHV18_02de02_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_02de02, mRNA sequence
Length = 438
Score = 113 bits (242), Expect = 9e-025
Identities = 47/61 (77%), Positives = 53/61 (86%)
Frame = +1 / -2
Query: 331 KTSWPEVVGLSVEDAKKVILKDKPDADIVVLPVGSVVTADYRPNRVRIFVDIVAQTPHIG 510
KTSWPEVVG S+E+AK++ILKD P+ADIVVLP GS VT D+R NRVRIFVD VA TPHIG
Sbjct: 359 KTSWPEVVGKSIEEAKEIILKDMPEADIVVLPAGSPVTMDFRSNRVRIFVDTVATTPHIG 180
Query: 511 * 513
*
Sbjct: 179 * 177
>gb|AJ228957.1|AJ228957 AJ228957 Barley leaf, 8 day old seedling Hordeum vulgare subsp.
vulgare cDNA clone HvBM099 similar to
subtilisin-chymotrypsin inhibitor, mRNA sequence
Length = 416
Score = 113 bits (241), Expect = 1e-024
Identities = 47/61 (77%), Positives = 52/61 (85%)
Frame = +1 / +1
Query: 331 KTSWPEVVGLSVEDAKKVILKDKPDADIVVLPVGSVVTADYRPNRVRIFVDIVAQTPHIG 510
KTSWPEVVG S+E+AK++ILKD P ADIVVLP GS VT D+R NRVRIFVD VA TPHIG
Sbjct: 79 KTSWPEVVGXSIEEAKEIILKDMPXADIVVLPAGSPVTLDFRTNRVRIFVDTVASTPHIG 258
Query: 511 * 513
*
Sbjct: 259 * 261
>gb|BM375954.2|BM375954 EBem06_SQ004_O08_R embryo, 21 DPA, no treatment, cv Optic, EBem06
Hordeum vulgare subsp. vulgare cDNA clone
EBem06_SQ004_O08 5', mRNA sequence
Length = 443
Score = 112 bits (239), Expect = 2e-024
Identities = 46/61 (75%), Positives = 53/61 (86%)
Frame = +1 / +3
Query: 331 KTSWPEVVGLSVEDAKKVILKDKPDADIVVLPVGSVVTADYRPNRVRIFVDIVAQTPHIG 510
KTSWPEVVG S+E+AK++ILKD P+ADIVVLP GS VT D++ NRVRIFVD VA TPHIG
Sbjct: 81 KTSWPEVVGKSIEEAKEIILKDMPEADIVVLPAGSPVTMDFKSNRVRIFVDTVATTPHIG 260
Query: 511 * 513
*
Sbjct: 261 * 263
>gb|CB875341.1|CB875341 HX08A04w HX Hordeum vulgare subsp. vulgare cDNA clone HX08A04
3-PRIME, mRNA sequence
Length = 437
Score = 112 bits (239), Expect = 2e-024
Identities = 46/61 (75%), Positives = 53/61 (86%)
Frame = +1 / -2
Query: 331 KTSWPEVVGLSVEDAKKVILKDKPDADIVVLPVGSVVTADYRPNRVRIFVDIVAQTPHIG 510
KTSWPEVVG S+E+AK++ILKD P+A+IVVLP GS VT D+R NRVRIFVD VA TPHIG
Sbjct: 337 KTSWPEVVGKSIEEAKEIILKDMPEAEIVVLPAGSPVTLDFRTNRVRIFVDTVASTPHIG 158
Query: 511 * 513
*
Sbjct: 157 * 155
>emb|AJ250663.2|HVU250663 Hordeum vulgare partial mRNA for putative proteinase inhibitor
(bci-7 gene)
Length = 306
Score = 112 bits (239), Expect = 2e-024
Identities = 46/61 (75%), Positives = 52/61 (85%)
Frame = +1 / +1
Query: 331 KTSWPEVVGLSVEDAKKVILKDKPDADIVVLPVGSVVTADYRPNRVRIFVDIVAQTPHIG 510
KTSWPEV G S+E+AK++ILKD P+ADIVVLP GS VT D+R NRVRIFVD VA TPHIG
Sbjct: 70 KTSWPEVAGKSIEEAKEIILKDMPEADIVVLPAGSPVTLDFRTNRVRIFVDTVASTPHIG 249
Query: 511 * 513
*
Sbjct: 250 * 252
>gb|BF630148.2|BF630148 HVSMEb0008C01f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0008C01f, mRNA sequence
Length = 501
Score = 111 bits (237), Expect = 5e-024
Identities = 46/61 (75%), Positives = 52/61 (85%)
Frame = +1 / +2
Query: 331 KTSWPEVVGLSVEDAKKVILKDKPDADIVVLPVGSVVTADYRPNRVRIFVDIVAQTPHIG 510
KTSWPEVVG S+E+AK++ILKD P+ADIVVLP GS VT D+R NRVRIFVD VA PHIG
Sbjct: 230 KTSWPEVVGKSIEEAKEIILKDMPEADIVVLPAGSPVTLDFRTNRVRIFVDTVASIPHIG 409
Query: 511 * 513
*
Sbjct: 410 * 412
>gb|BF629382.3|BF629382 HVSMEb0012B12f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0012B12f, mRNA sequence
Length = 471
Score = 111 bits (237), Expect = 5e-024
Identities = 46/61 (75%), Positives = 52/61 (85%)
Frame = +1 / +2
Query: 331 KTSWPEVVGLSVEDAKKVILKDKPDADIVVLPVGSVVTADYRPNRVRIFVDIVAQTPHIG 510
KTSWPEVVG S+E+AK++ILKD P+ADIVVLP GS VT D+R NRVRIFVD VA PHIG
Sbjct: 92 KTSWPEVVGKSIEEAKEIILKDMPEADIVVLPAGSPVTLDFRTNRVRIFVDTVASIPHIG 271
Query: 511 * 513
*
Sbjct: 272 * 274
>gb|BF253985.3|BF253985 HVSMEf0002K21f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0002K21f, mRNA sequence
Length = 470
Score = 111 bits (237), Expect = 5e-024
Identities = 46/61 (75%), Positives = 52/61 (85%)
Frame = +1 / +2
Query: 331 KTSWPEVVGLSVEDAKKVILKDKPDADIVVLPVGSVVTADYRPNRVRIFVDIVAQTPHIG 510
KTSWPEVVG S+E+AK++ILKD P+ADIVVLP GS VT D+R NRVRIFVD VA PHIG
Sbjct: 74 KTSWPEVVGKSIEEAKEIILKDMPEADIVVLPAGSPVTLDFRTNRVRIFVDTVASIPHIG 253
Query: 511 * 513
*
Sbjct: 254 * 256
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 270,906,623
Number of Sequences: 312970
Number of extensions: 4047863
Number of successful extensions: 75721
Number of sequences better than 1.0e-020: 83
length of database: 58,378,179
effective HSP length: 51
effective length of database: 42,416,709
effective search space used: 8356091673
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)