TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBE1h10.xg.2.1
(463 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF064963.3|BF064963 HV_CEb0022D03f Hordeum vulgare seedl... 230 3e-060
gb|BJ467660.1|BJ467660 BJ467660 K. Sato unpublished cDNA li... 228 1e-059
gb|BJ457246.1|BJ457246 BJ457246 K. Sato unpublished cDNA li... 223 5e-058
gb|BF260173.2|BF260173 HVSMEf0021E20f Hordeum vulgare seedl... 222 7e-058
gb|BJ449827.1|BJ449827 BJ449827 K. Sato unpublished cDNA li... 221 3e-057
gb|BQ468711.1|BQ468711 HM02B12r HM Hordeum vulgare subsp. v... 173 6e-043
emb|AJ534447.1|HVU534447 Hordeum vulgare mRNA for apoplasti... 173 6e-043
gb|AL503000.1|AL503000 AL503000 Hordeum vulgare Barke roots... 172 1e-042
gb|AV930059.1|AV930059 AV930059 K. Sato unpublished cDNA li... 167 4e-041
gb|BU973477.1|BU973477 HB25B07r BC Hordeum vulgare subsp. v... 165 2e-040
gb|AJ434754.1|AJ434754 AJ434754 S00002 Hordeum vulgare subs... 152 1e-036
gb|BQ760946.1|BQ760946 EBro03_SQ003_O23_R root, 3 week, wat... 152 1e-036
gb|BU996678.1|BU996678 HM14G07r HM Hordeum vulgare subsp. v... 151 2e-036
gb|AV930060.1|AV930060 AV930060 K. Sato unpublished cDNA li... 144 2e-034
gb|BF255160.2|BF255160 HVSMEf0006B22f Hordeum vulgare seedl... 128 2e-029
gb|BF260867.2|BF260867 HVSMEf0023C11f Hordeum vulgare seedl... 93 1e-028
gb|BQ468675.1|BQ468675 HM01P04T HM Hordeum vulgare subsp. v... 93 1e-028
gb|BF256656.2|BF256656 HVSMEf0010J22f Hordeum vulgare seedl... 93 2e-028
gb|BU996531.1|BU996531 HM13O15r HM Hordeum vulgare subsp. v... 117 3e-026
gb|BE420989.1|BE420989 HWM004.F06 ITEC HWM Barley Leaf Libr... 93 1e-025
gb|AV928934.1|AV928934 AV928934 K. Sato unpublished cDNA li... 93 2e-025
gb|BQ661204.1|BQ661204 HM02G15u HM Hordeum vulgare subsp. v... 113 5e-025
gb|CA030695.1|CA030695 HX07N13r HX Hordeum vulgare subsp. v... 93 1e-024
gb|CB881780.1|CB881780 HM10N17w HM Hordeum vulgare subsp. v... 93 5e-024
gb|CB882529.1|CB882529 HL02C03w HL Hordeum vulgare subsp. v... 87 4e-022
gb|BQ665811.1|BQ665811 HZ01D05u HZ Hordeum vulgare subsp. v... 87 4e-022
>gb|BF064963.3|BF064963 HV_CEb0022D03f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0022D03f, mRNA sequence
Length = 690
Score = 230 bits (497), Expect = 3e-060
Identities = 94/125 (75%), Positives = 104/125 (83%)
Frame = +2 / +1
Query: 5 ASEDLQERXXXFFRVFRDGHGKPKVLMCTDPTKXXLSPDLYKPTFXXFVDADISXXXITL 184
AS DL E+ FFRVF+DG+GKP VLMC+DPTK L+P LYKPTF FVD DIS I+L
Sbjct: 58 ASADLAEKTAVFFRVFKDGYGKPLVLMCSDPTKSSLTPGLYKPTFAGFVDTDISSGKISL 237
Query: 185 RSLIDRSXVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEXDVTXSGLTAWEMKKPL 364
RSLIDRS VESFGAGGKTCILSRVYPS+A+GKDAHLYVFNNGE D+ S L AWEMKKP+
Sbjct: 238 RSLIDRSVVESFGAGGKTCILSRVYPSMAIGKDAHLYVFNNGETDIKVSQLKAWEMKKPM 417
Query: 365 MNGA* 379
MNGA*
Sbjct: 418 MNGA* 432
Score = 169 bits (364), Expect = 7e-042
Identities = 79/124 (63%), Positives = 87/124 (70%)
Frame = -2 / -2
Query: 375 APFIXGFFISQAVRPXXVTSXSPLLKT*R*ASFPTAMDGYTRDRMHVLPPAPKLSTXDRS 196
APFI GFFIS A+ + S SPLL T*R ASFP AMDGYT +RM V PPAPKLST +RS
Sbjct: 428 APFIMGFFISHALSWDTLISVSPLLNT*RCASFPIAMDGYTLERMQVFPPAPKLSTTERS 249
Query: 195 IKLLRVXXXXEMSASTKXXKVGLYRSGLRXXLVGSVHMSTLGLPCPSLKTLKXXXXRSCR 16
IKLL+ EMS ST VGLYR G+R LVGS+HM T GLP PSLKTLK S R
Sbjct: 248 IKLLKEIFPDEMSVSTNPANVGLYRPGVRDDLVGSLHMRTRGLPYPSLKTLKKTAVFSAR 69
Query: 15 SSEA 4
S+EA
Sbjct: 68 SAEA 57
Score = 128 bits (274), Expect = 2e-029
Identities = 63/124 (50%), Positives = 78/124 (62%)
Frame = -1 / -1
Query: 376 GAVHQXFLHLPGGQTGXXDVXLAVVENVEVSVLPDGDGRVHP*QDARLASRAEALDXGPI 197
GA+H LHLP + G D+ L +VE+VE+ V PD GRVH +DA L S AEAL+ G +
Sbjct: 429 GAIHHGLLHLPRLELGYLDIRLPIVEHVEMRVFPDRHGRVHSREDAGLPSGAEALNHGTV 250
Query: 196 DQASKGDXXXRDVGVDEXXEGRLVQIRTKXXLGGVGAHEHLGLAVSVPEDPEEXXXXLLQ 17
DQAS+GD +VGVDE E RLV R + GGV AHE GLA+S+ ED EE L +
Sbjct: 249 DQASQGDLPG*NVGVDEPGERRLV*ARGER*FGGVTAHEDEGLAISILEDSEEDGGLLGK 70
Query: 16 VFGG 5
V G
Sbjct: 69 VGRG 58
>gb|BJ467660.1|BJ467660 BJ467660 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags29e15 3', mRNA sequence
Length = 602
Score = 228 bits (493), Expect = 1e-059
Identities = 93/124 (75%), Positives = 103/124 (83%)
Frame = +2 / -3
Query: 8 SEDLQERXXXFFRVFRDGHGKPKVLMCTDPTKXXLSPDLYKPTFXXFVDADISXXXITLR 187
S DL E+ FFRVF+DG+GKP VLMC+DPTK L+P LYKPTF FVD DIS I+LR
Sbjct: 600 SADLAEKTAVFFRVFKDGYGKPLVLMCSDPTKSSLTPGLYKPTFAGFVDTDISSGKISLR 421
Query: 188 SLIDRSXVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEXDVTXSGLTAWEMKKPLM 367
SLIDRS VESFGAGGKTCILSRVYPS+A+GKDAHLYVFNNGE D+ S L AWEMKKP+M
Sbjct: 420 SLIDRSVVESFGAGGKTCILSRVYPSMAIGKDAHLYVFNNGETDIKVSQLKAWEMKKPMM 241
Query: 368 NGA* 379
NGA*
Sbjct: 240 NGA* 229
Score = 167 bits (360), Expect = 3e-041
Identities = 78/123 (63%), Positives = 86/123 (69%)
Frame = -2 / +2
Query: 375 APFIXGFFISQAVRPXXVTSXSPLLKT*R*ASFPTAMDGYTRDRMHVLPPAPKLSTXDRS 196
APFI GFFIS A+ + S SPLL T*R ASFP AMDGYT +RM V PPAPKLST +RS
Sbjct: 233 APFIMGFFISHALSWDTLISVSPLLNT*RCASFPIAMDGYTLERMQVFPPAPKLSTTERS 412
Query: 195 IKLLRVXXXXEMSASTKXXKVGLYRSGLRXXLVGSVHMSTLGLPCPSLKTLKXXXXRSCR 16
IKLL+ EMS ST VGLYR G+R LVGS+HM T GLP PSLKTLK S R
Sbjct: 413 IKLLKEIFPDEMSVSTNPANVGLYRPGVRDDLVGSLHMRTRGLPYPSLKTLKKTAVFSAR 592
Query: 15 SSE 7
S+E
Sbjct: 593 SAE 601
Score = 127 bits (273), Expect = 3e-029
Identities = 62/121 (51%), Positives = 77/121 (63%)
Frame = -1 / +1
Query: 376 GAVHQXFLHLPGGQTGXXDVXLAVVENVEVSVLPDGDGRVHP*QDARLASRAEALDXGPI 197
GA+H LHLP + G D+ L +VE+VE+ V PD GRVH +DA L S AEAL+ G +
Sbjct: 232 GAIHHGLLHLPRLELGYLDIRLPIVEHVEMRVFPDRHGRVHSREDAGLPSGAEALNHGTV 411
Query: 196 DQASKGDXXXRDVGVDEXXEGRLVQIRTKXXLGGVGAHEHLGLAVSVPEDPEEXXXXLLQ 17
DQAS+GD +VGVDE E RLV R + GGV AHE GLA+S+ ED EE L +
Sbjct: 412 DQASQGDLPG*NVGVDEPGERRLV*ARGER*FGGVTAHEDEGLAISILEDSEEDGGLLGK 591
Query: 16 V 14
V
Sbjct: 592 V 594
>gb|BJ457246.1|BJ457246 BJ457246 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak26o06 3', mRNA sequence
Length = 581
Score = 223 bits (481), Expect = 5e-058
Identities = 90/119 (75%), Positives = 100/119 (84%)
Frame = +2 / -2
Query: 23 ERXXXFFRVFRDGHGKPKVLMCTDPTKXXLSPDLYKPTFXXFVDADISXXXITLRSLIDR 202
E+ FFRVF+DG+GKP VLMC+DPTK L+P LYKPTF FVD DIS I+LRSLIDR
Sbjct: 577 EKTAVFFRVFKDGYGKPLVLMCSDPTKSSLTPGLYKPTFAGFVDTDISSGKISLRSLIDR 398
Query: 203 SXVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEXDVTXSGLTAWEMKKPLMNGA* 379
S VESFGAGGKTCILSRVYPS+A+GKDAHLYVFNNGE D+ S L AWEMKKP+MNGA*
Sbjct: 397 SVVESFGAGGKTCILSRVYPSMAIGKDAHLYVFNNGETDIKVSQLKAWEMKKPMMNGA* 221
Score = 161 bits (346), Expect = 2e-039
Identities = 74/112 (66%), Positives = 81/112 (72%)
Frame = -2 / +3
Query: 375 APFIXGFFISQAVRPXXVTSXSPLLKT*R*ASFPTAMDGYTRDRMHVLPPAPKLSTXDRS 196
APFI GFFIS A+ + S SPLL T*R ASFP AMDGYT +RM V PPAPKLST +RS
Sbjct: 225 APFIMGFFISHALSWDTLISVSPLLNT*RCASFPIAMDGYTLERMQVFPPAPKLSTTERS 404
Query: 195 IKLLRVXXXXEMSASTKXXKVGLYRSGLRXXLVGSVHMSTLGLPCPSLKTLK 40
IKLL+ EMS ST VGLYR G+R LVGS+HM T GLP PSLKTLK
Sbjct: 405 IKLLKEIFPDEMSVSTNPANVGLYRPGVRDDLVGSLHMRTRGLPYPSLKTLK 560
Score = 127 bits (273), Expect = 3e-029
Identities = 60/113 (53%), Positives = 75/113 (66%)
Frame = -1 / +2
Query: 376 GAVHQXFLHLPGGQTGXXDVXLAVVENVEVSVLPDGDGRVHP*QDARLASRAEALDXGPI 197
G++H LHLP + G D+ L +VE+VE+ V PD GRVH +DA L S AEAL+ G +
Sbjct: 224 GSIHHGLLHLPRLELGYLDIRLPIVEHVEMRVFPDRHGRVHSREDAGLPSGAEALNHGTV 403
Query: 196 DQASKGDXXXRDVGVDEXXEGRLVQIRTKXXLGGVGAHEHLGLAVSVPEDPEE 38
DQAS+GD +VGVDE E RLV R + LGGV AHE GLA+S+ ED EE
Sbjct: 404 DQASQGDLPG*NVGVDEPGERRLV*ARGER*LGGVTAHEDEGLAISILEDSEE 562
>gb|BF260173.2|BF260173 HVSMEf0021E20f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0021E20f, mRNA sequence
Length = 790
Score = 222 bits (480), Expect = 7e-058
Identities = 91/125 (72%), Positives = 101/125 (80%)
Frame = +2 / +3
Query: 5 ASEDLQERXXXFFRVFRDGHGKPKVLMCTDPTKXXLSPDLYKPTFXXFVDADISXXXITL 184
AS DL E+ FFRVF+DG+GKP VLMC+DPTK L+P LYKPTF FVD DIS I+L
Sbjct: 183 ASADLAEKTAVFFRVFKDGYGKPLVLMCSDPTKSSLTPGLYKPTFAGFVDTDISSGKISL 362
Query: 185 RSLIDRSXVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEXDVTXSGLTAWEMKKPL 364
RSLIDRS VESFGAGGKTCILSRVYP +A+GKDAHLYVFNNGE D S L AWE+ KP+
Sbjct: 363 RSLIDRSVVESFGAGGKTCILSRVYPXMAIGKDAHLYVFNNGETDFKGSQLKAWEINKPM 542
Query: 365 MNGA* 379
MNGA*
Sbjct: 543 MNGA* 557
Score = 160 bits (343), Expect = 6e-039
Identities = 76/124 (61%), Positives = 84/124 (67%)
Frame = -2 / -1
Query: 375 APFIXGFFISQAVRPXXVTSXSPLLKT*R*ASFPTAMDGYTRDRMHVLPPAPKLSTXDRS 196
APFI G IS A+ + S SPLL T*R ASFP AM GYT +RM V PPAPKLST +RS
Sbjct: 553 APFIMGLLISHALSWDPLKSVSPLLNT*RCASFPIAMXGYTLERMQVFPPAPKLSTTERS 374
Query: 195 IKLLRVXXXXEMSASTKXXKVGLYRSGLRXXLVGSVHMSTLGLPCPSLKTLKXXXXRSCR 16
IKLL+ EMS ST VGLYR G+R LVGS+HM T GLP PSLKTLK S R
Sbjct: 373 IKLLKEIFPDEMSVSTNPANVGLYRPGVRDDLVGSLHMRTRGLPYPSLKTLKKTAVFSAR 194
Query: 15 SSEA 4
S+EA
Sbjct: 193 SAEA 182
Score = 116 bits (248), Expect = 7e-026
Identities = 58/124 (46%), Positives = 75/124 (60%)
Frame = -1 / -3
Query: 376 GAVHQXFLHLPGGQTGXXDVXLAVVENVEVSVLPDGDGRVHP*QDARLASRAEALDXGPI 197
GA+H ++ P + G + L +VE+VE+ V PD RVH +DA L S AEAL+ G +
Sbjct: 554 GAIHHGLINFPRLELGSLKIRLPIVEHVEMRVFPDRHXRVHSREDAGLPSGAEALNHGTV 375
Query: 196 DQASKGDXXXRDVGVDEXXEGRLVQIRTKXXLGGVGAHEHLGLAVSVPEDPEEXXXXLLQ 17
DQAS+GD +VGVDE E RLV R + GGV AHE GLA+S+ ED EE L +
Sbjct: 374 DQASQGDLPG*NVGVDEPGERRLV*ARGER*FGGVTAHEDEGLAISILEDSEEDGGLLGK 195
Query: 16 VFGG 5
V G
Sbjct: 194 VGRG 183
>gb|BJ449827.1|BJ449827 BJ449827 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak26o06 5', mRNA sequence
Length = 600
Score = 221 bits (476), Expect = 3e-057
Identities = 89/118 (75%), Positives = 99/118 (83%)
Frame = +2 / +3
Query: 26 RXXXFFRVFRDGHGKPKVLMCTDPTKXXLSPDLYKPTFXXFVDADISXXXITLRSLIDRS 205
+ FFRVF+DG+GKP VLMC+DPTK L+P LYKPTF FVD DIS I+LRSLIDRS
Sbjct: 9 KTAVFFRVFKDGYGKPLVLMCSDPTKSSLTPGLYKPTFAGFVDTDISSGKISLRSLIDRS 188
Query: 206 XVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEXDVTXSGLTAWEMKKPLMNGA* 379
VESFGAGGKTCILSRVYPS+A+GKDAHLYVFNNGE D+ S L AWEMKKP+MNGA*
Sbjct: 189 VVESFGAGGKTCILSRVYPSMAIGKDAHLYVFNNGETDIKVSQLKAWEMKKPMMNGA* 362
Score = 161 bits (346), Expect = 2e-039
Identities = 74/112 (66%), Positives = 81/112 (72%)
Frame = -2 / -3
Query: 375 APFIXGFFISQAVRPXXVTSXSPLLKT*R*ASFPTAMDGYTRDRMHVLPPAPKLSTXDRS 196
APFI GFFIS A+ + S SPLL T*R ASFP AMDGYT +RM V PPAPKLST +RS
Sbjct: 358 APFIMGFFISHALSWDTLISVSPLLNT*RCASFPIAMDGYTLERMQVFPPAPKLSTTERS 179
Query: 195 IKLLRVXXXXEMSASTKXXKVGLYRSGLRXXLVGSVHMSTLGLPCPSLKTLK 40
IKLL+ EMS ST VGLYR G+R LVGS+HM T GLP PSLKTLK
Sbjct: 178 IKLLKEIFPDEMSVSTNPANVGLYRPGVRDDLVGSLHMRTRGLPYPSLKTLK 23
Score = 127 bits (273), Expect = 3e-029
Identities = 60/113 (53%), Positives = 75/113 (66%)
Frame = -1 / -2
Query: 376 GAVHQXFLHLPGGQTGXXDVXLAVVENVEVSVLPDGDGRVHP*QDARLASRAEALDXGPI 197
G++H LHLP + G D+ L +VE+VE+ V PD GRVH +DA L S AEAL+ G +
Sbjct: 359 GSIHHGLLHLPRLELGYLDIRLPIVEHVEMRVFPDRHGRVHSREDAGLPSGAEALNHGTV 180
Query: 196 DQASKGDXXXRDVGVDEXXEGRLVQIRTKXXLGGVGAHEHLGLAVSVPEDPEE 38
DQAS+GD +VGVDE E RLV R + LGGV AHE GLA+S+ ED EE
Sbjct: 179 DQASQGDLPG*NVGVDEPGERRLV*ARGER*LGGVTAHEDEGLAISILEDSEE 21
>gb|BQ468711.1|BQ468711 HM02B12r HM Hordeum vulgare subsp. vulgare cDNA clone HM02B12
5-PRIME, mRNA sequence
Length = 528
Score = 173 bits (372), Expect = 6e-043
Identities = 69/102 (67%), Positives = 84/102 (82%)
Frame = +2 / +3
Query: 62 HGKPKVLMCTDPTKXXLSPDLYKPTFXXFVDADISXXXITLRSLIDRSXVESFGAGGKTC 241
+ KP VLMC+DPT L+P+LYKPTF FVD DI+ I+LRSLIDRS VESFGAGG+TC
Sbjct: 21 NNKPVVLMCSDPTMSSLNPNLYKPTFAGFVDTDIAKGKISLRSLIDRSVVESFGAGGRTC 200
Query: 242 ILSRVYPSIAVGKDAHLYVFNNGEXDVTXSGLTAWEMKKPLM 367
ILSRVYP++A+GK+A L+VFNNG+ D+ S LTAWEMKKP +
Sbjct: 201 ILSRVYPTLALGKNARLHVFNNGKVDIKVSELTAWEMKKPAL 326
Score = 126 bits (269), Expect = 9e-029
Identities = 61/98 (62%), Positives = 66/98 (67%)
Frame = -2 / -3
Query: 360 GFFISQAVRPXXVTSXSPLLKT*R*ASFPTAMDGYTRDRMHVLPPAPKLSTXDRSIKLLR 181
GFFIS AV + S PLLKT*R A P+A G TR+RM VLPPAPKLST DRSI+LLR
Sbjct: 319 GFFISHAVSSDTLMSTLPLLKT*RRAFLPSASVG*TRERMQVLPPAPKLSTTDRSIRLLR 140
Query: 180 VXXXXEMSASTKXXKVGLYRSGLRXXLVGSVHMSTLGL 67
MS STK KVGLYR G R +VGS HM T GL
Sbjct: 139 DILPLAMSVSTKPAKVGLYRFGFRDDMVGSEHMRTTGL 26
>emb|AJ534447.1|HVU534447 Hordeum vulgare mRNA for apoplastic invertase 1 (cwinw1 gene)
Length = 2095
Score = 173 bits (372), Expect = 6e-043
Identities = 69/102 (67%), Positives = 84/102 (82%)
Frame = +2 / +3
Query: 62 HGKPKVLMCTDPTKXXLSPDLYKPTFXXFVDADISXXXITLRSLIDRSXVESFGAGGKTC 241
+ KP VLMC+DPT L+P+LYKPTF FVD DI+ I+LRSLIDRS VESFGAGG+TC
Sbjct: 1515 NNKPVVLMCSDPTMSSLNPNLYKPTFAGFVDTDIAKGKISLRSLIDRSVVESFGAGGRTC 1694
Query: 242 ILSRVYPSIAVGKDAHLYVFNNGEXDVTXSGLTAWEMKKPLM 367
ILSRVYP++A+GK+A L+VFNNG+ D+ S LTAWEMKKP +
Sbjct: 1695 ILSRVYPTLALGKNARLHVFNNGKVDIKVSELTAWEMKKPAL 1820
Score = 126 bits (269), Expect = 9e-029
Identities = 61/98 (62%), Positives = 66/98 (67%)
Frame = -2 / -1
Query: 360 GFFISQAVRPXXVTSXSPLLKT*R*ASFPTAMDGYTRDRMHVLPPAPKLSTXDRSIKLLR 181
GFFIS AV + S PLLKT*R A P+A G TR+RM VLPPAPKLST DRSI+LLR
Sbjct: 1813 GFFISHAVSSDTLMSTLPLLKT*RRAFLPSASVG*TRERMQVLPPAPKLSTTDRSIRLLR 1634
Query: 180 VXXXXEMSASTKXXKVGLYRSGLRXXLVGSVHMSTLGL 67
MS STK KVGLYR G R +VGS HM T GL
Sbjct: 1633 DILPLAMSVSTKPAKVGLYRFGFRDDMVGSEHMRTTGL 1520
>gb|AL503000.1|AL503000 AL503000 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW09G14u 3', mRNA sequence
Length = 595
Score = 172 bits (370), Expect = 1e-042
Identities = 71/90 (78%), Positives = 77/90 (85%)
Frame = +2 / -3
Query: 110 LSPDLYKPTFXXFVDADISXXXITLRSLIDRSXVESFGAGGKTCILSRVYPSIAVGKDAH 289
L+P LYKPTF FVD DIS I+LRSLIDRS VESFGAGGKTCILSRVYPS+A+GKDAH
Sbjct: 524 LTPGLYKPTFAGFVDTDISSGKISLRSLIDRSVVESFGAGGKTCILSRVYPSMAIGKDAH 345
Query: 290 LYVFNNGEXDVTXSGLTAWEMKKPLMNGA* 379
LYVFNNGE D+ S L AWEMKKP+MNGA*
Sbjct: 344 LYVFNNGETDIKVSQLKAWEMKKPMMNGA* 255
Score = 124 bits (265), Expect = 3e-028
Identities = 57/89 (64%), Positives = 63/89 (70%)
Frame = -2 / +1
Query: 375 APFIXGFFISQAVRPXXVTSXSPLLKT*R*ASFPTAMDGYTRDRMHVLPPAPKLSTXDRS 196
APFI GFFIS A+ + S SPLL T*R ASFP AMDGYT +RM V PPAPKLST +RS
Sbjct: 259 APFIMGFFISHALSWDTLISVSPLLNT*RCASFPIAMDGYTLERMQVFPPAPKLSTTERS 438
Query: 195 IKLLRVXXXXEMSASTKXXKVGLYRSGLR 109
IKLL+ EMS ST VGLYR G+R
Sbjct: 439 IKLLKEIFPDEMSVSTNPANVGLYRPGVR 525
>gb|AV930059.1|AV930059 AV930059 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd17l01 3', mRNA sequence
Length = 502
Score = 167 bits (359), Expect = 4e-041
Identities = 69/86 (80%), Positives = 74/86 (86%)
Frame = +2 / -1
Query: 122 LYKPTFXXFVDADISXXXITLRSLIDRSXVESFGAGGKTCILSRVYPSIAVGKDAHLYVF 301
LYKPTF FVD DIS I+LRSLIDRS VESFGAGGKTCILSRVYPS+A+GKDAHLYVF
Sbjct: 481 LYKPTFAGFVDTDISSGKISLRSLIDRSVVESFGAGGKTCILSRVYPSMAIGKDAHLYVF 302
Query: 302 NNGEXDVTXSGLTAWEMKKPLMNGA* 379
NNGE D+ S L AWEMKKP+MNGA*
Sbjct: 301 NNGETDIKVSQLKAWEMKKPMMNGA* 224
Score = 119 bits (254), Expect = 1e-026
Identities = 55/85 (64%), Positives = 60/85 (70%)
Frame = -2 / +3
Query: 375 APFIXGFFISQAVRPXXVTSXSPLLKT*R*ASFPTAMDGYTRDRMHVLPPAPKLSTXDRS 196
APFI GFFIS A+ + S SPLL T*R ASFP AMDGYT +RM V PPAPKLST +RS
Sbjct: 228 APFIMGFFISHALSWDTLISVSPLLNT*RCASFPIAMDGYTLERMQVFPPAPKLSTTERS 407
Query: 195 IKLLRVXXXXEMSASTKXXKVGLYR 121
IKLL+ EMS ST VGLYR
Sbjct: 408 IKLLKEIFPDEMSVSTNPANVGLYR 482
>gb|BU973477.1|BU973477 HB25B07r BC Hordeum vulgare subsp. vulgare cDNA clone HB25B07
5-PRIME, mRNA sequence
Length = 477
Score = 165 bits (354), Expect = 2e-040
Identities = 66/97 (68%), Positives = 80/97 (82%)
Frame = +2 / +1
Query: 62 HGKPKVLMCTDPTKXXLSPDLYKPTFXXFVDADISXXXITLRSLIDRSXVESFGAGGKTC 241
+ KP VLMC+DPT L+P+LYKPTF FVD DI+ I+LRSLIDRS VESFGAGG+TC
Sbjct: 187 NNKPVVLMCSDPTMSSLNPNLYKPTFAGFVDTDIAKGKISLRSLIDRSVVESFGAGGRTC 366
Query: 242 ILSRVYPSIAVGKDAHLYVFNNGEXDVTXSGLTAWEM 352
ILSRVYP++A+GK+A L+VFNNG+ D+ S LTAWEM
Sbjct: 367 ILSRVYPTLALGKNARLHVFNNGKVDIKVSELTAWEM 477
Score = 117 bits (251), Expect(2) = 8e-026
Identities = 58/95 (61%), Positives = 63/95 (66%)
Frame = -2 / -2
Query: 351 ISQAVRPXXVTSXSPLLKT*R*ASFPTAMDGYTRDRMHVLPPAPKLSTXDRSIKLLRVXX 172
IS AV + S PLLKT*R A P+A G TR+RM VLPPAPKLST DRSI+LLR
Sbjct: 476 ISHAVSSDTLMSTLPLLKT*RRAFLPSASVG*TRERMQVLPPAPKLSTTDRSIRLLRDIL 297
Query: 171 XXEMSASTKXXKVGLYRSGLRXXLVGSVHMSTLGL 67
MS STK KVGLYR G R +VGS HM T GL
Sbjct: 296 PLAMSVSTKPAKVGLYRFGFRDDMVGSEHMRTTGL 192
Score = 17.6 bits (32), Expect(2) = 8e-026
Identities = 8/16 (50%), Positives = 9/16 (56%)
Frame = -1 / -1
Query: 52 EDPEEXXXXLLQVFGG 5
E PEE LLQ+ G
Sbjct: 159 EHPEEDRRLLLQLGRG 112
>gb|AJ434754.1|AJ434754 AJ434754 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200078A03F1, mRNA sequence
Length = 502
Score = 152 bits (326), Expect = 1e-036
Identities = 63/78 (80%), Positives = 68/78 (87%)
Frame = +2 / +3
Query: 146 FVDADISXXXITLRSLIDRSXVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEXDVT 325
FVD DIS I+LRSLIDRS VESFGAGGKTCILSRVYPS+A+GKDAHLYVFNNGE D+
Sbjct: 9 FVDTDISSGKISLRSLIDRSVVESFGAGGKTCILSRVYPSMAIGKDAHLYVFNNGETDIK 188
Query: 326 XSGLTAWEMKKPLMNGA* 379
S L AWEMKKP+MNGA*
Sbjct: 189 VSQLKAWEMKKPMMNGA* 242
Score = 108 bits (230), Expect = 2e-023
Identities = 50/76 (65%), Positives = 55/76 (72%)
Frame = -2 / -1
Query: 375 APFIXGFFISQAVRPXXVTSXSPLLKT*R*ASFPTAMDGYTRDRMHVLPPAPKLSTXDRS 196
APFI GFFIS A+ + S SPLL T*R ASFP AMDGYT +RM V PPAPKLST +RS
Sbjct: 238 APFIMGFFISHALSWDTLISVSPLLNT*RCASFPIAMDGYTLERMQVFPPAPKLSTTERS 59
Query: 195 IKLLRVXXXXEMSAST 148
IKLL+ EMS ST
Sbjct: 58 IKLLKEIFPDEMSVST 11
>gb|BQ760946.1|BQ760946 EBro03_SQ003_O23_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ003_O23 5', mRNA sequence
Length = 484
Score = 152 bits (326), Expect = 1e-036
Identities = 63/78 (80%), Positives = 68/78 (87%)
Frame = +2 / +2
Query: 146 FVDADISXXXITLRSLIDRSXVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEXDVT 325
FVD DIS I+LRSLIDRS VESFGAGGKTCILSRVYPS+A+GKDAHLYVFNNGE D+
Sbjct: 8 FVDTDISSGKISLRSLIDRSVVESFGAGGKTCILSRVYPSMAIGKDAHLYVFNNGETDIK 187
Query: 326 XSGLTAWEMKKPLMNGA* 379
S L AWEMKKP+MNGA*
Sbjct: 188 VSQLKAWEMKKPMMNGA* 241
Score = 108 bits (230), Expect = 2e-023
Identities = 50/76 (65%), Positives = 55/76 (72%)
Frame = -2 / -2
Query: 375 APFIXGFFISQAVRPXXVTSXSPLLKT*R*ASFPTAMDGYTRDRMHVLPPAPKLSTXDRS 196
APFI GFFIS A+ + S SPLL T*R ASFP AMDGYT +RM V PPAPKLST +RS
Sbjct: 237 APFIMGFFISHALSWDTLISVSPLLNT*RCASFPIAMDGYTLERMQVFPPAPKLSTTERS 58
Query: 195 IKLLRVXXXXEMSAST 148
IKLL+ EMS ST
Sbjct: 57 IKLLKEIFPDEMSVST 10
>gb|BU996678.1|BU996678 HM14G07r HM Hordeum vulgare subsp. vulgare cDNA clone HM14G07
5-PRIME, mRNA sequence
Length = 540
Score = 151 bits (324), Expect = 2e-036
Identities = 61/92 (66%), Positives = 75/92 (81%)
Frame = +2 / +1
Query: 62 HGKPKVLMCTDPTKXXLSPDLYKPTFXXFVDADISXXXITLRSLIDRSXVESFGAGGKTC 241
+ KP VLMC+DPT L+P+LYKPTF FVD DI+ I+LRSLIDRS VESFGAGG+TC
Sbjct: 265 NNKPVVLMCSDPTMSSLNPNLYKPTFAGFVDTDIAKGKISLRSLIDRSVVESFGAGGRTC 444
Query: 242 ILSRVYPSIAVGKDAHLYVFNNGEXDVTXSGL 337
ILSRVYP++A+GK+A L+VFNNG+ D+ S L
Sbjct: 445 ILSRVYPTLALGKNARLHVFNNGKVDIKVSEL 540
Score = 111 bits (238), Expect = 2e-024
Identities = 54/84 (64%), Positives = 58/84 (69%)
Frame = -2 / -2
Query: 318 SXSPLLKT*R*ASFPTAMDGYTRDRMHVLPPAPKLSTXDRSIKLLRVXXXXEMSASTKXX 139
S PLLKT*R A P+A G TR+RM VLPPAPKLST DRSI+LLR MS STK
Sbjct: 521 STLPLLKT*RRAFLPSASVG*TRERMQVLPPAPKLSTTDRSIRLLRDILPLAMSVSTKPA 342
Query: 138 KVGLYRSGLRXXLVGSVHMSTLGL 67
KVGLYR G R +VGS HM T GL
Sbjct: 341 KVGLYRFGFRDDMVGSEHMRTTGL 270
>gb|AV930060.1|AV930060 AV930060 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd17l02 3', mRNA sequence
Length = 425
Score = 144 bits (310), Expect = 2e-034
Identities = 60/74 (81%), Positives = 65/74 (87%)
Frame = +2 / -3
Query: 158 DISXXXITLRSLIDRSXVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEXDVTXSGL 337
DIS I+LRSLIDRS VESFGAGGKTCILSRVYPS+A+GKDAHLYVFNNGE D+ S L
Sbjct: 420 DISSGKISLRSLIDRSVVESFGAGGKTCILSRVYPSMAIGKDAHLYVFNNGETDIKVSQL 241
Query: 338 TAWEMKKPLMNGA* 379
AWEMKKP+MNGA*
Sbjct: 240 KAWEMKKPMMNGA* 199
Score = 104 bits (221), Expect = 4e-022
Identities = 48/73 (65%), Positives = 53/73 (72%)
Frame = -2 / +2
Query: 375 APFIXGFFISQAVRPXXVTSXSPLLKT*R*ASFPTAMDGYTRDRMHVLPPAPKLSTXDRS 196
APFI GFFIS A+ + S SPLL T*R ASFP AMDGYT +RM V PPAPKLST +RS
Sbjct: 203 APFIMGFFISHALSWDTLISVSPLLNT*RCASFPIAMDGYTLERMQVFPPAPKLSTTERS 382
Query: 195 IKLLRVXXXXEMS 157
IKLL+ EMS
Sbjct: 383 IKLLKEIFPDEMS 421
>gb|BF255160.2|BF255160 HVSMEf0006B22f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0006B22f, mRNA sequence
Length = 604
Score = 128 bits (274), Expect = 2e-029
Identities = 53/77 (68%), Positives = 59/77 (76%)
Frame = +2 / +1
Query: 5 ASEDLQERXXXFFRVFRDGHGKPKVLMCTDPTKXXLSPDLYKPTFXXFVDADISXXXITL 184
AS DL E+ FFRVF+DG+GKP VLMC+DPTK L+P LYKPTF FVD DIS I+L
Sbjct: 373 ASADLAEKTAVFFRVFKDGYGKPLVLMCSDPTKSSLTPGLYKPTFAGFVDTDISSGKISL 552
Query: 185 RSLIDRSXVESFGAGGK 235
R LIDRS VESF AGGK
Sbjct: 553 RKLIDRSVVESFXAGGK 603
>gb|BF260867.2|BF260867 HVSMEf0023C11f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0023C11f, mRNA sequence
Length = 750
Score = 93.2 bits (197), Expect(3) = 1e-028
Identities = 38/74 (51%), Positives = 48/74 (64%)
Frame = +2 / +2
Query: 149 VDADISXXXITLRSLIDRSXVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEXDVTX 328
+D + I+LR+L+D S VESFG GG+TCI +RVYP V ++HLYVFNNG V
Sbjct: 443 MDIEAQGGSISLRTLVDHSVVESFGGGGRTCITARVYPDHVVNGNSHLYVFNNGTGAVKV 622
Query: 329 SGLTAWEMKKPLMN 370
S L AWEM +N
Sbjct: 623 SSLDAWEMATATVN 664
Score = 41.8 bits (85), Expect(3) = 1e-028
Identities = 17/32 (53%), Positives = 20/32 (62%)
Frame = +2 / +2
Query: 68 KPKVLMCTDPTKXXLSPDLYKPTFXXFVDADI 163
K KVLMCTD +K +YKP + FVD DI
Sbjct: 356 KYKVLMCTDLSKSSTRDGVYKPPYGAFVDMDI 451
Score = 28.1 bits (55), Expect(3) = 1e-028
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +2 / +2
Query: 5 ASEDLQERXXXFFRVFR 55
AS D+QE FFRVFR
Sbjct: 296 ASGDMQEHTAVFFRVFR 346
>gb|BQ468675.1|BQ468675 HM01P04T HM Hordeum vulgare subsp. vulgare cDNA clone HM01P04
5-PRIME, mRNA sequence
Length = 663
Score = 93.2 bits (197), Expect(3) = 1e-028
Identities = 38/74 (51%), Positives = 48/74 (64%)
Frame = +2 / +3
Query: 149 VDADISXXXITLRSLIDRSXVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEXDVTX 328
+D + I+LR+L+D S VESFG GG+TCI +RVYP V ++HLYVFNNG V
Sbjct: 375 MDIEAQGGSISLRTLVDHSVVESFGGGGRTCITARVYPDHVVNGNSHLYVFNNGTGAVKV 554
Query: 329 SGLTAWEMKKPLMN 370
S L AWEM +N
Sbjct: 555 SSLDAWEMATATVN 596
Score = 41.8 bits (85), Expect(3) = 1e-028
Identities = 17/32 (53%), Positives = 20/32 (62%)
Frame = +2 / +3
Query: 68 KPKVLMCTDPTKXXLSPDLYKPTFXXFVDADI 163
K KVLMCTD +K +YKP + FVD DI
Sbjct: 288 KYKVLMCTDLSKSSTRDGVYKPPYGAFVDMDI 383
Score = 28.1 bits (55), Expect(3) = 1e-028
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +2 / +3
Query: 5 ASEDLQERXXXFFRVFR 55
AS D+QE FFRVFR
Sbjct: 228 ASGDMQEHTAVFFRVFR 278
>gb|BF256656.2|BF256656 HVSMEf0010J22f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0010J22f, mRNA sequence
Length = 846
Score = 92.7 bits (196), Expect(3) = 2e-028
Identities = 38/74 (51%), Positives = 48/74 (64%)
Frame = +2 / +3
Query: 149 VDADISXXXITLRSLIDRSXVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEXDVTX 328
+D + I+LR+L+D S VESFG GG+TCI +RVYP V ++HLYVFNNG V
Sbjct: 489 MDIEAQGGSISLRTLVDHSVVESFGGGGRTCITARVYPDHVVNGNSHLYVFNNGTGAVKV 668
Query: 329 SGLTAWEMKKPLMN 370
S L AWEM +N
Sbjct: 669 SSLYAWEMATATVN 710
Score = 41.8 bits (85), Expect(3) = 2e-028
Identities = 17/32 (53%), Positives = 20/32 (62%)
Frame = +2 / +3
Query: 68 KPKVLMCTDPTKXXLSPDLYKPTFXXFVDADI 163
K KVLMCTD +K +YKP + FVD DI
Sbjct: 402 KYKVLMCTDLSKSSTRDGVYKPPYGAFVDMDI 497
Score = 28.1 bits (55), Expect(3) = 2e-028
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +2 / +3
Query: 5 ASEDLQERXXXFFRVFR 55
AS D+QE FFRVFR
Sbjct: 342 ASGDMQEHTAVFFRVFR 392
>gb|BU996531.1|BU996531 HM13O15r HM Hordeum vulgare subsp. vulgare cDNA clone HM13O15
5-PRIME, mRNA sequence
Length = 481
Score = 117 bits (251), Expect(2) = 3e-026
Identities = 47/64 (73%), Positives = 57/64 (89%)
Frame = +2 / +1
Query: 176 ITLRSLIDRSXVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEXDVTXSGLTAWEMK 355
I+LRSLIDRS VESFGAGG+TCILSRVYP++A+GK+A L+VFNNG+ D+ S LTAWEMK
Sbjct: 16 ISLRSLIDRSVVESFGAGGRTCILSRVYPTLALGKNARLHVFNNGKVDIKVSELTAWEMK 195
Query: 356 KPLM 367
KP +
Sbjct: 196 KPAL 207
Score = 18.9 bits (35), Expect(2) = 3e-026
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +2 / +1
Query: 353 KKPLMNGA*N 382
K LMNGA*N
Sbjct: 196 KPALMNGA*N 225
>gb|BE420989.1|BE420989 HWM004.F06 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM004.F06, mRNA sequence
Length = 1123
Score = 93.2 bits (197), Expect(2) = 1e-025
Identities = 38/74 (51%), Positives = 48/74 (64%)
Frame = +2 / +1
Query: 149 VDADISXXXITLRSLIDRSXVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEXDVTX 328
+D + I+LR+L+D S VESFG GG+TCI +RVYP V ++HLYVFNNG V
Sbjct: 142 MDIEAQGGSISLRTLVDHSVVESFGGGGRTCITARVYPDHVVNGNSHLYVFNNGTGAVKV 321
Query: 329 SGLTAWEMKKPLMN 370
S L AWEM +N
Sbjct: 322 SSLDAWEMATATVN 363
Score = 41.8 bits (85), Expect(2) = 1e-025
Identities = 17/32 (53%), Positives = 20/32 (62%)
Frame = +2 / +1
Query: 68 KPKVLMCTDPTKXXLSPDLYKPTFXXFVDADI 163
K KVLMCTD +K +YKP + FVD DI
Sbjct: 55 KYKVLMCTDLSKSSTRDGVYKPPYGAFVDMDI 150
>gb|AV928934.1|AV928934 AV928934 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd20e08 3', mRNA sequence
Length = 716
Score = 93.2 bits (197), Expect(2) = 2e-025
Identities = 38/74 (51%), Positives = 48/74 (64%)
Frame = +2 / -1
Query: 149 VDADISXXXITLRSLIDRSXVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEXDVTX 328
+D + I+LR+L+D S VESFG GG+TCI +RVYP V ++HLYVFNNG V
Sbjct: 620 MDIEAQGGSISLRTLVDHSVVESFGGGGRTCITARVYPDHVVNGNSHLYVFNNGTGAVKV 441
Query: 329 SGLTAWEMKKPLMN 370
S L AWEM +N
Sbjct: 440 SSLDAWEMATATVN 399
Score = 41.8 bits (85), Expect(2) = 2e-025
Identities = 17/32 (53%), Positives = 20/32 (62%)
Frame = +2 / -1
Query: 68 KPKVLMCTDPTKXXLSPDLYKPTFXXFVDADI 163
K KVLMCTD +K +YKP + FVD DI
Sbjct: 707 KYKVLMCTDLSKSSTRDGVYKPPYGAFVDMDI 612
>gb|BQ661204.1|BQ661204 HM02G15u HM Hordeum vulgare subsp. vulgare cDNA clone HM02G15
3-PRIME, mRNA sequence
Length = 493
Score = 113 bits (242), Expect = 5e-025
Identities = 45/65 (69%), Positives = 52/65 (80%)
Frame = +2 / -1
Query: 176 ITLRSLIDRSXVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEXDVTXSGLTAWEMK 355
I LR+LID S VESFGAGGKTCIL+RVYP AVG +AHL++FNNGE D+ + L AWEMK
Sbjct: 481 IALRTLIDHSVVESFGAGGKTCILTRVYPKKAVGDNAHLFIFNNGESDIKLTNLRAWEMK 302
Query: 356 KPLMN 370
P MN
Sbjct: 301 TPTMN 287
>gb|CA030695.1|CA030695 HX07N13r HX Hordeum vulgare subsp. vulgare cDNA clone HX07N13
5-PRIME, mRNA sequence
Length = 475
Score = 93.2 bits (197), Expect(2) = 1e-024
Identities = 38/74 (51%), Positives = 48/74 (64%)
Frame = +2 / +3
Query: 149 VDADISXXXITLRSLIDRSXVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEXDVTX 328
+D + I+LR+L+D S VESFG GG+TCI +RVYP V ++HLYVFNNG V
Sbjct: 81 MDIEAQGGSISLRTLVDHSVVESFGGGGRTCITARVYPDHVVNGNSHLYVFNNGTGAVKV 260
Query: 329 SGLTAWEMKKPLMN 370
S L AWEM +N
Sbjct: 261 SSLDAWEMATATVN 302
Score = 38.6 bits (78), Expect(2) = 1e-024
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = +2 / +3
Query: 77 VLMCTDPTKXXLSPDLYKPTFXXFVDADI 163
VLMCTD +K +YKP + FVD DI
Sbjct: 3 VLMCTDLSKSSTRDGVYKPPYGAFVDMDI 89
>gb|CB881780.1|CB881780 HM10N17w HM Hordeum vulgare subsp. vulgare cDNA clone HM10N17
3-PRIME, mRNA sequence
Length = 612
Score = 93.2 bits (197), Expect(2) = 5e-024
Identities = 38/74 (51%), Positives = 48/74 (64%)
Frame = +2 / -1
Query: 149 VDADISXXXITLRSLIDRSXVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEXDVTX 328
+D + I+LR+L+D S VESFG GG+TCI +RVYP V ++HLYVFNNG V
Sbjct: 537 MDIEAQGGSISLRTLVDHSVVESFGGGGRTCITARVYPDHVVNGNSHLYVFNNGTGAVKV 358
Query: 329 SGLTAWEMKKPLMN 370
S L AWEM +N
Sbjct: 357 SSLDAWEMATATVN 316
Score = 36.8 bits (74), Expect(2) = 5e-024
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +2 / -1
Query: 80 LMCTDPTKXXLSPDLYKPTFXXFVDADI 163
LMCTD +K +YKP + FVD DI
Sbjct: 612 LMCTDLSKSSTRDGVYKPPYGAFVDMDI 529
>gb|CB882529.1|CB882529 HL02C03w HL Hordeum vulgare subsp. vulgare cDNA clone HL02C03
3-PRIME, mRNA sequence
Length = 540
Score = 86.8 bits (183), Expect(2) = 4e-022
Identities = 36/74 (48%), Positives = 48/74 (64%)
Frame = +2 / -3
Query: 149 VDADISXXXITLRSLIDRSXVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEXDVTX 328
+D + I+LR+LID S VESFG GG+TCI +RVYP A K++H++VFNNG V
Sbjct: 412 IDIEQHGRSISLRTLIDHSVVESFGGGGRTCITARVYPQHAENKNSHVFVFNNGTGLVKV 233
Query: 329 SGLTAWEMKKPLMN 370
S L AW + +N
Sbjct: 232 SKLEAWRLATAAVN 191
Score = 36.8 bits (74), Expect(2) = 4e-022
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +2 / -3
Query: 68 KPKVLMCTDPTKXXLSPDLYKPTFXXFVDADI 163
K KVLMCTD T+ +YK + FVD DI
Sbjct: 499 KYKVLMCTDLTRSSGRDKVYKSLYGGFVDIDI 404
>gb|BQ665811.1|BQ665811 HZ01D05u HZ Hordeum vulgare subsp. vulgare cDNA clone HZ01D05
3-PRIME, mRNA sequence
Length = 534
Score = 86.8 bits (183), Expect(2) = 4e-022
Identities = 36/74 (48%), Positives = 48/74 (64%)
Frame = +2 / -3
Query: 149 VDADISXXXITLRSLIDRSXVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEXDVTX 328
+D + I+LR+LID S VESFG GG+TCI +RVYP A K++H++VFNNG V
Sbjct: 436 IDIEQHGRSISLRTLIDHSVVESFGGGGRTCITARVYPQHAENKNSHVFVFNNGTGLVKV 257
Query: 329 SGLTAWEMKKPLMN 370
S L AW + +N
Sbjct: 256 SKLEAWRLATAAVN 215
Score = 36.8 bits (74), Expect(2) = 4e-022
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +2 / -3
Query: 68 KPKVLMCTDPTKXXLSPDLYKPTFXXFVDADI 163
K KVLMCTD T+ +YK + FVD DI
Sbjct: 523 KYKVLMCTDLTRSSGRDKVYKSLYGGFVDIDI 428
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 156,281,022
Number of Sequences: 312970
Number of extensions: 1867808
Number of successful extensions: 70466
Number of sequences better than 1.0e-020: 34
length of database: 58,378,179
effective HSP length: 50
effective length of database: 42,729,679
effective search space used: 4401156937
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)