TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QAZ2b01.yg.2.1
         (541 letters)

Database: Hordeum_nucl_with_EST.fasta 
           312,970 sequences; 175,134,539 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AV836714.1|AV836714  AV836714 K. Sato unpublished cDNA li...   141   4e-037

>gb|AV836714.1|AV836714 AV836714 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
           vulgare seedling leaves second leaf stage Hordeum
           vulgare subsp. vulgare cDNA clone basd26p01, mRNA
           sequence
          Length = 635

 Score =  141 bits (303), Expect(2) = 4e-037
 Identities = 55/90 (61%), Positives = 77/90 (85%)
 Frame = +3 / +3

                                                                       
Query: 12  LXNDVLDRAKIEAGKLELEAVPFDLRSLMDDVISLFSSKSREKCIELAVFVCDNVPKDVL 191
           L N+VLD+AKIE+GKLEL+AVP D+R + DD++SLF  K++EK +ELAV+V D VP+ ++
Sbjct: 93  LINEVLDQAKIESGKLELDAVPLDVRLVCDDILSLFCGKAQEKGLELAVYVSDQVPQTLI 272

                                         
Query: 192 GDPWRFRQILTNLVGNAVKFTERGHVFVRV 281
           GDP R RQI+TNL+GN++KFTERGH+++ V
Sbjct: 273 GDPNRMRQIITNLMGNSIKFTERGHIYLTV 362




 Score = 32.7 bits (65), Expect(2) = 4e-037
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3 / +3

                                        
Query: 354 VDSTTNGAFNTLSGFEAAXXRNSWQYFXM 440
           V++     +NTLSG E A  R SWQ F +
Sbjct: 396 VETEIQNTYNTLSGCEVAKRRLSWQSFRL 482



  Database: Hordeum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:16 PM
  Number of letters in database: 175,134,539
  Number of sequences in database:  312,970
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 201,798,115
Number of Sequences: 312970
Number of extensions: 2777413
Number of successful extensions: 35200
Number of sequences better than 1.0e-020: 2
length of database: 58,378,179
effective HSP length: 50
effective length of database: 42,729,679
effective search space used: 5512128591
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)