TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAZ1h07.yg.2.1
(357 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ759881.1|BQ759881 EBpi05_SQ004_P16_R pistil, 8 DPA, no... 160 4e-039
gb|BM097618.2|BM097618 EBem04_SQ002_D15_R embryo, 12 DPA, n... 117 4e-035
gb|BF628930.2|BF628930 HVSMEb0009C23f Hordeum vulgare seedl... 146 4e-035
gb|BI956772.1|BI956772 HVSMEn0005E06f Hordeum vulgare rachi... 145 1e-034
gb|BF622288.3|BF622288 HVSMEa0002I16f Hordeum vulgare seedl... 114 1e-034
gb|BI959138.1|BI959138 HVSMEn0018F10f Hordeum vulgare rachi... 129 3e-034
gb|AV917139.1|AV917139 AV917139 K. Sato unpublished cDNA li... 112 2e-032
gb|CK123980.1|CK123980 BES1824106f16 BES1824 Hordeum vulgar... 112 4e-032
gb|BF254126.2|BF254126 HVSMEf0003B13f Hordeum vulgare seedl... 112 5e-032
gb|BF260026.3|BF260026 HVSMEf0020O13f Hordeum vulgare seedl... 132 1e-030
gb|CV058074.1|CV058074 BNEL34a7 Barley EST endosperm librar... 102 8e-030
gb|CK122737.1|CK122737 BES1824105j22 BES1824 Hordeum vulgar... 109 2e-029
gb|BE060246.3|BE060246 HVSMEg0011L08f Hordeum vulgare pre-a... 102 2e-029
gb|CK122346.1|CK122346 BES1824102p12 BES1824 Hordeum vulgar... 102 3e-029
gb|CV054003.1|CV054003 BNEL105f8 Barley EST endosperm libra... 112 1e-028
gb|BF253787.2|BF253787 HVSMEf0002C01f Hordeum vulgare seedl... 108 3e-028
gb|AV928430.1|AV928430 AV928430 K. Sato unpublished cDNA li... 122 1e-027
gb|CV063217.1|CV063217 BNEL87h3 Barley EST endosperm librar... 109 3e-027
gb|BE196421.3|BE196421 HVSMEh0092D24f Hordeum vulgare 5-45 ... 73 6e-027
gb|BF257093.3|BF257093 HVSMEf0011N11f Hordeum vulgare seedl... 116 4e-026
gb|CA019924.1|CA019924 HV13L18r HV Hordeum vulgare subsp. v... 116 4e-026
gb|BE454367.2|BE454367 HVSMEh0093N18f Hordeum vulgare 5-45 ... 102 5e-026
gb|AV917082.1|AV917082 AV917082 K. Sato unpublished cDNA li... 112 6e-026
gb|CA019997.1|CA019997 HV14A15r HV Hordeum vulgare subsp. v... 112 1e-025
gb|BQ465138.1|BQ465138 HU02M06r HU Hordeum vulgare subsp. v... 112 1e-025
gb|BJ463021.1|BJ463021 BJ463021 K. Sato unpublished cDNA li... 113 3e-025
gb|BI950777.1|BI950777 HVSMEl0023C15f Hordeum vulgare spike... 112 9e-025
gb|BU967134.1|BU967134 HB03G05r BC Hordeum vulgare subsp. v... 112 9e-025
gb|BU981055.1|BU981055 HA22I03r HA Hordeum vulgare subsp. v... 112 9e-025
gb|CV063939.1|CV063939 BNEL94h5 Barley EST endosperm librar... 112 9e-025
gb|BI958784.1|BI958784 HVSMEn0016J13f Hordeum vulgare rachi... 109 6e-024
gb|BQ458429.1|BQ458429 HA05E07r HA Hordeum vulgare subsp. v... 109 6e-024
gb|BI957603.1|BI957603 HVSMEn0010F11f Hordeum vulgare rachi... 109 8e-024
gb|CV055940.1|CV055940 BNEL12B5 Barley EST endosperm librar... 81 3e-023
gb|BM098205.2|BM098205 EBpi03_SQ002_N14_R pistil, 4 DPA, no... 93 4e-023
gb|BU980984.1|BU980984 HA22E18r HA Hordeum vulgare subsp. v... 93 4e-023
gb|BI960458.1|BI960458 HVSMEn0024K16f Hordeum vulgare rachi... 105 1e-022
gb|CV060611.1|CV060611 BNEL5B4 Barley EST endosperm library... 104 3e-022
gb|CV060955.1|CV060955 BNEL63c5 Barley EST endosperm librar... 83 3e-022
gb|BQ459308.1|BQ459308 HA01I15r HA Hordeum vulgare subsp. v... 79 4e-022
gb|CB880652.1|CB880652 HM07E17w HM Hordeum vulgare subsp. v... 103 5e-022
gb|CB881234.1|CB881234 HM09C23w HM Hordeum vulgare subsp. v... 103 5e-022
gb|BG368652.1|BG368652 HVSMEi0020B24f Hordeum vulgare 20 DA... 93 9e-022
gb|BG369116.2|BG369116 HVSMEi0021M10f Hordeum vulgare 20 DA... 87 3e-021
gb|BF256653.2|BF256653 HVSMEf0010J19f Hordeum vulgare seedl... 100 3e-021
gb|BU995090.1|BU995090 HM09C23r HM Hordeum vulgare subsp. v... 99 9e-021
>gb|BQ759881.1|BQ759881 EBpi05_SQ004_P16_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ004_P16 5', mRNA sequence
Length = 500
Score = 160 bits (343), Expect = 4e-039
Identities = 66/114 (57%), Positives = 75/114 (65%)
Frame = +1 / +2
Query: 16 YHFDLSGTAFGGXXQPXXXXELXXAGIIDIQFRRXXCXXXGQXVTXXIEHGSNPXYLAVL 195
YHFDLSGTAFG +P +L +GIIDIQF+R C G VT +E GSNP Y AVL
Sbjct: 2 YHFDLSGTAFGAMAKPGLSEKLRHSGIIDIQFKRVPCEFPGLKVTFHVEQGSNPVYFAVL 181
Query: 196 VEFEXXDGDVXQVDIXEANSGWWMPMRXSWGXXWRMDSKRXLQXXXSLRXXXES 357
VE+E DGDV QVD+ EANSG W PMR SWG WR+DS LQ S+R ES
Sbjct: 182 VEYEDGDGDVVQVDLMEANSGTWTPMRESWGSIWRLDSGHRLQAPFSMRITNES 343
Score = 116 bits (247), Expect = 7e-026
Identities = 56/114 (49%), Positives = 58/114 (50%)
Frame = -2 / -3
Query: 356 DSXXMRSXXXXCXXRLESILQXXPHDXRIGIHHPELASXMSTXXXXXXXXXXXXXTAK*X 177
DS MR ES Q PHD RIG+H PELAS ST TAK
Sbjct: 342 DSLVMRMEKGAWRRWPESSRQIDPHDSRIGVHVPELASMRSTCTTSPSPSSYSTSTAKYT 163
Query: 176 GFEPCSMXKVTXCPXXMQXXLLNWMSMMPAXXSSXXXXGCXMPPNAVPLRSKWY 15
GF+PCS KVT P LLNWMSMMP S G M PNAVPLRSKWY
Sbjct: 162 GFDPCSTWKVTLRPGNSHGTLLNWMSMMPECRSFSLRPGLAMAPNAVPLRSKWY 1
>gb|BM097618.2|BM097618 EBem04_SQ002_D15_R embryo, 12 DPA, no treatment, cv Optic, EBem04
Hordeum vulgare subsp. vulgare cDNA clone
EBem04_SQ002_D15 5', mRNA sequence
Length = 477
Score = 117 bits (250), Expect(2) = 4e-035
Identities = 48/82 (58%), Positives = 58/82 (70%)
Frame = +1 / +3
Query: 4 PVAKYHFDLSGTAFGGXXQPXXXXELXXAGIIDIQFRRXXCXXXGQXVTXXIEHGSNPXY 183
PV++YHFDLSGTAFG + EL AGIID+QF+R C G VT ++HGSNP Y
Sbjct: 111 PVSRYHFDLSGTAFGAMAKYGRNDELRHAGIIDMQFKRVPCQYPGLTVTFRVQHGSNPNY 290
Query: 184 LAVLVEFEXXDGDVXQVDIXEA 249
LA+LVE+E DGDV QVDI E+
Sbjct: 291 LAILVEYEDGDGDVAQVDIMES 356
Score = 48.3 bits (99), Expect(2) = 4e-035
Identities = 18/32 (56%), Positives = 21/32 (65%)
Frame = +1 / +3
Query: 247 ANSGWWMPMRXSWGXXWRMDSKRXLQXXXSLR 342
A +G+W PMR SWG WR+D R LQ SLR
Sbjct: 372 APTGYWTPMRESWGSIWRLDRLRPLQGPFSLR 467
>gb|BF628930.2|BF628930 HVSMEb0009C23f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0009C23f, mRNA sequence
Length = 762
Score = 146 bits (314), Expect = 4e-035
Identities = 61/107 (57%), Positives = 70/107 (65%)
Frame = +1 / +3
Query: 4 PVAKYHFDLSGTAFGGXXQPXXXXELXXAGIIDIQFRRXXCXXXGQXVTXXIEHGSNPXY 183
PVA+YHFDLSGTAFG + +L +GIIDIQFRR C G + + GSN Y
Sbjct: 432 PVAQYHFDLSGTAFGALAKSGLNEKLRHSGIIDIQFRRVPCNFPGLKINFHVVEGSNAVY 611
Query: 184 LAVLVEFEXXDGDVXQVDIXEANSGWWMPMRXSWGXXWRMDSKRXLQ 324
LAVL+E+E DGDV QVD+ ANSG WM MR SWG WRMDS LQ
Sbjct: 612 LAVLIEYEDMDGDVIQVDMKGANSGSWMAMRESWGSIWRMDSNHRLQ 752
Score = 100 bits (213), Expect = 3e-021
Identities = 48/103 (46%), Positives = 52/103 (50%)
Frame = -2 / -3
Query: 311 LESILQXXPHDXRIGIHHPELASXMSTXXXXXXXXXXXXXTAK*XGFEPCSMXKVTXCPX 132
LESI Q PHD RI IH PELA MST TA+ EP + K+ P
Sbjct: 739 LESIRQMDPHDSRIAIHDPELAPFMSTWITSPSMSSYSISTARYTALEPSTTWKLILRPG 560
Query: 131 XMQXXLLNWMSMMPAXXSSXXXXGCXMPPNAVPLRSKWYLATG 3
+ LLNWMSMMP S P AVPLRSKWY ATG
Sbjct: 559 KLHGTLLNWMSMMPEWRSFSLRPDLARAPKAVPLRSKWYWATG 431
>gb|BI956772.1|BI956772 HVSMEn0005E06f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0005E06f, mRNA sequence
Length = 796
Score = 145 bits (311), Expect = 1e-034
Identities = 60/102 (58%), Positives = 69/102 (67%)
Frame = +1 / +1
Query: 4 PVAKYHFDLSGTAFGGXXQPXXXXELXXAGIIDIQFRRXXCXXXGQXVTXXIEHGSNPXY 183
PVAKYHFDLSGTAFG +P +L +GIIDIQF+R C G VT +E GSNP Y
Sbjct: 310 PVAKYHFDLSGTAFGAMAKPGLSEKLRHSGIIDIQFKRVPCEFPGLKVTFHVEQGSNPVY 489
Query: 184 LAVLVEFEXXDGDVXQVDIXEANSGWWMPMRXSWGXXWRMDS 309
AVLVE+ DGD+ QVD+ EANS W PMR SWG R+DS
Sbjct: 490 FAVLVEYXDGDGDMVQVDLMEANSCTWTPMRESWGSILRLDS 615
Score = 116 bits (249), Expect = 4e-026
Identities = 54/102 (52%), Positives = 57/102 (55%)
Frame = -2 / -3
Query: 308 ESILQXXPHDXRIGIHHPELASXMSTXXXXXXXXXXXXXTAK*XGFEPCSMXKVTXCPXX 129
ES + PHD RIG+H ELAS ST TAK GF+PCS KVT P
Sbjct: 614 ESSRKIDPHDSRIGVHVQELASMRSTCTMSPSPSSYSTSTAKYTGFDPCSTWKVTLRPGN 435
Query: 128 MQXXLLNWMSMMPAXXSSXXXXGCXMPPNAVPLRSKWYLATG 3
LLNWMSMMP S G M PNAVPLRSKWYLATG
Sbjct: 434 SHGTLLNWMSMMPECRSFSLRPGLAMAPNAVPLRSKWYLATG 309
>gb|BF622288.3|BF622288 HVSMEa0002I16f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0002I16f, mRNA sequence
Length = 851
Score = 114 bits (244), Expect(2) = 1e-034
Identities = 46/82 (56%), Positives = 58/82 (70%)
Frame = +1 / +2
Query: 4 PVAKYHFDLSGTAFGGXXQPXXXXELXXAGIIDIQFRRXXCXXXGQXVTXXIEHGSNPXY 183
PV+++HFDLSGTAFG + EL AGIID+QFRR C G VT ++HGSNP Y
Sbjct: 287 PVSRFHFDLSGTAFGAMAKDGRNEELRHAGIIDMQFRRVPCQYPGLTVTFHVQHGSNPYY 466
Query: 184 LAVLVEFEXXDGDVXQVDIXEA 249
LA+LVE+E DGDV QVD+ ++
Sbjct: 467 LAILVEYENGDGDVDQVDMMQS 532
Score = 50.6 bits (104), Expect(2) = 1e-034
Identities = 19/37 (51%), Positives = 24/37 (64%)
Frame = +1 / +2
Query: 247 ANSGWWMPMRXSWGXXWRMDSKRXLQXXXSLRXXXES 357
A +G W+PM SWG WRMD++R +Q SLR ES
Sbjct: 566 APTGEWVPMTESWGSIWRMDTRRPMQGPFSLRITNES 676
>gb|BI959138.1|BI959138 HVSMEn0018F10f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0018F10f, mRNA sequence
Length = 669
Score = 129 bits (276), Expect(2) = 3e-034
Identities = 53/87 (60%), Positives = 61/87 (70%)
Frame = +1 / +3
Query: 4 PVAKYHFDLSGTAFGGXXQPXXXXELXXAGIIDIQFRRXXCXXXGQXVTXXIEHGSNPXY 183
PVAKYHFDLSGTAFG +P +L +GIIDIQF+R C G VT +E GSNP Y
Sbjct: 327 PVAKYHFDLSGTAFGAMAKPGLSEKLRHSGIIDIQFKRVPCEFPGLKVTFHVEQGSNPVY 506
Query: 184 LAVLVEFEXXDGDVXQVDIXEANSGWW 264
AVLVE+E DGD+ QVD+ EANSG W
Sbjct: 507 FAVLVEYEDGDGDLVQVDLMEANSGTW 587
Score = 100 bits (214), Expect(2) = 1e-022
Identities = 47/87 (54%), Positives = 48/87 (55%)
Frame = -2 / -3
Query: 263 HHPELASXMSTXXXXXXXXXXXXXTAK*XGFEPCSMXKVTXCPXXMQXXLLNWMSMMPAX 84
H PELAS ST TAK GF+PCS KVT P LLNWMSMMP
Sbjct: 586 HVPELASMRSTCTKSPSPSSYSTSTAKYTGFDPCSTWKVTLRPGNSHGTLLNWMSMMPEC 407
Query: 83 XSSXXXXGCXMPPNAVPLRSKWYLATG 3
S G M PNAVPLRSKWYLATG
Sbjct: 406 RSFSLRPGLAMAPNAVPLRSKWYLATG 326
Score = 34.1 bits (68), Expect(2) = 3e-034
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1 / +1
Query: 268 PMRXSWGXXWRMDSKRXLQXXXSL 339
PMR SWG WR++S LQ S+
Sbjct: 592 PMRESWGSIWRVESGHRLQAPFSM 663
Score = 23.5 bits (45), Expect(2) = 1e-022
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -2 / -2
Query: 308 ESILQXXPHDXRIGI 264
+S Q PHD RIG+
Sbjct: 632 DSTRQIDPHDSRIGV 588
>gb|AV917139.1|AV917139 AV917139 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20o17 5', mRNA sequence
Length = 590
Score = 112 bits (239), Expect(2) = 2e-032
Identities = 48/85 (56%), Positives = 55/85 (64%)
Frame = +1 / +1
Query: 4 PVAKYHFDLSGTAFGGXXQPXXXXELXXAGIIDIQFRRXXCXXXGQXVTXXIEHGSNPXY 183
PVA YHFDLSGTAFG +P EL AGIIDIQF R C G V +E GSN Y
Sbjct: 67 PVAPYHFDLSGTAFGKLAKPGRNDELRHAGIIDIQFTRVACEFPGLKVGFHVEEGSNAVY 246
Query: 184 LAVLVEFEXXDGDVXQVDIXEANSG 258
+A+LVE+E DGDV QVD+ E+ G
Sbjct: 247 MAILVEYENGDGDVVQVDLMESGRG 321
Score = 44.1 bits (90), Expect(2) = 2e-032
Identities = 17/34 (50%), Positives = 19/34 (55%)
Frame = +1 / +1
Query: 256 GWWMPMRXSWGXXWRMDSKRXLQXXXSLRXXXES 357
G W MR SWG WR+DS LQ S+R ES
Sbjct: 334 GRWTRMRESWGSIWRLDSNHRLQAPFSIRIRNES 435
>gb|CK123980.1|CK123980 BES1824106f16 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010F166 5-PRIME, mRNA sequence
Length = 750
Score = 112 bits (239), Expect(2) = 4e-032
Identities = 48/85 (56%), Positives = 55/85 (64%)
Frame = +1 / +1
Query: 4 PVAKYHFDLSGTAFGGXXQPXXXXELXXAGIIDIQFRRXXCXXXGQXVTXXIEHGSNPXY 183
PVA YHFDLSGTAFG +P EL AGIIDIQF R C G V +E GSN Y
Sbjct: 262 PVAPYHFDLSGTAFGKLAKPGRNDELRHAGIIDIQFTRVACEFPGLKVGFHVEEGSNAVY 441
Query: 184 LAVLVEFEXXDGDVXQVDIXEANSG 258
+A+LVE+E DGDV QVD+ E+ G
Sbjct: 442 MAILVEYENGDGDVVQVDLMESGRG 516
Score = 44.1 bits (90), Expect(2) = 4e-032
Identities = 17/34 (50%), Positives = 19/34 (55%)
Frame = +1 / +1
Query: 256 GWWMPMRXSWGXXWRMDSKRXLQXXXSLRXXXES 357
G W MR SWG WR+DS LQ S+R ES
Sbjct: 529 GRWTRMRESWGSIWRLDSNHRLQAPFSIRIRNES 630
>gb|BF254126.2|BF254126 HVSMEf0003B13f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0003B13f, mRNA sequence
Length = 789
Score = 112 bits (239), Expect(2) = 5e-032
Identities = 48/85 (56%), Positives = 55/85 (64%)
Frame = +1 / +2
Query: 4 PVAKYHFDLSGTAFGGXXQPXXXXELXXAGIIDIQFRRXXCXXXGQXVTXXIEHGSNPXY 183
PVA YHFDLSGTAFG +P EL AGIIDIQF R C G V +E GSN Y
Sbjct: 206 PVAPYHFDLSGTAFGKLAKPGRNDELRHAGIIDIQFTRVACEFPGLKVGFHVEEGSNAVY 385
Query: 184 LAVLVEFEXXDGDVXQVDIXEANSG 258
+A+LVE+E DGDV QVD+ E+ G
Sbjct: 386 MAILVEYENGDGDVVQVDLMESGRG 460
Score = 43.7 bits (89), Expect(2) = 5e-032
Identities = 17/34 (50%), Positives = 19/34 (55%)
Frame = +1 / +2
Query: 256 GWWMPMRXSWGXXWRMDSKRXLQXXXSLRXXXES 357
G W MR SWG WR+DS LQ S+R ES
Sbjct: 473 GRWTRMRESWGFIWRLDSNHRLQAPFSIRIRNES 574
>gb|BF260026.3|BF260026 HVSMEf0020O13f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0020O13f, mRNA sequence
Length = 535
Score = 132 bits (282), Expect = 1e-030
Identities = 56/108 (51%), Positives = 66/108 (61%)
Frame = +1 / +1
Query: 34 GTAFGGXXQPXXXXELXXAGIIDIQFRRXXCXXXGQXVTXXIEHGSNPXYLAVLVEFEXX 213
GTAFG + +L +GIIDIQFRR C G + + GSN YLAVL+E+E
Sbjct: 1 GTAFGALAKSGLNEKLRHSGIIDIQFRRVPCNFPGLKINFHVVEGSNAVYLAVLIEYEDM 180
Query: 214 DGDVXQVDIXEANSGWWMPMRXSWGXXWRMDSKRXLQXXXSLRXXXES 357
DGDV QVD+ EANSG WM MR SWG WRMDS LQ S+R +S
Sbjct: 181 DGDVIQVDMKEANSGSWMAMRESWGSIWRMDSNHRLQGPFSMRITSDS 324
>gb|CV058074.1|CV058074 BNEL34a7 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL34a7 5' similar to Oryza sativa
beta-expansin, mRNA sequence
Length = 630
Score = 102 bits (218), Expect(2) = 8e-030
Identities = 43/80 (53%), Positives = 53/80 (66%)
Frame = +1 / +3
Query: 19 HFDLSGTAFGGXXQPXXXXELXXAGIIDIQFRRXXCXXXGQXVTXXIEHGSNPXYLAVLV 198
HFDLSGTAFG + EL AGII++QF+R C G VT +E GSNP Y+A+LV
Sbjct: 3 HFDLSGTAFGAMAKYGRNDELRHAGIINMQFKRVPCQYPGLTVTFHVEEGSNPFYMAILV 182
Query: 199 EFEXXDGDVXQVDIXEANSG 258
E+E DGDV Q+DI E+ G
Sbjct: 183 EYENGDGDVKQLDIMESRPG 242
Score = 45.5 bits (93), Expect(2) = 8e-030
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +1 / +3
Query: 253 SGWWMPMRXSWGXXWRMDSKRXLQXXXSLRXXXES 357
+G W+PM+ SWG WRMD+ + SLR ES
Sbjct: 270 TGQWVPMKESWGSIWRMDAHHPMHGPFSLRVTNES 374
>gb|CK122737.1|CK122737 BES1824105j22 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010J225 5-PRIME, mRNA sequence
Length = 776
Score = 109 bits (233), Expect(2) = 2e-029
Identities = 47/81 (58%), Positives = 53/81 (65%)
Frame = +1 / +1
Query: 4 PVAKYHFDLSGTAFGGXXQPXXXXELXXAGIIDIQFRRXXCXXXGQXVTXXIEHGSNPXY 183
PVA YHFDLSGTAFG +P EL AGIIDIQF R C G V +E GSN Y
Sbjct: 379 PVAPYHFDLSGTAFGKLAKPGRNDELRHAGIIDIQFTRVACEFPGLKVGFHVEEGSNAVY 558
Query: 184 LAVLVEFEXXDGDVXQVDIXE 246
+A+LVE+E DGDV QVD+ E
Sbjct: 559 MAILVEYENGDGDVVQVDLME 621
Score = 38.2 bits (77), Expect(2) = 2e-029
Identities = 18/37 (48%), Positives = 21/37 (56%)
Frame = +1 / +3
Query: 247 ANSGWWMPMRXSWGXXWRMDSKRXLQXXXSLRXXXES 357
A +G W M SWG W +DS LQ S+R ES
Sbjct: 639 AAAGRWTRMPESWGSIWGLDSXNRLQXPXSIRIRNES 749
>gb|BE060246.3|BE060246 HVSMEg0011L08f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0011L08f, mRNA sequence
Length = 544
Score = 102 bits (218), Expect(2) = 2e-029
Identities = 44/82 (53%), Positives = 52/82 (63%)
Frame = +1 / +2
Query: 4 PVAKYHFDLSGTAFGGXXQPXXXXELXXAGIIDIQFRRXXCXXXGQXVTXXIEHGSNPXY 183
PVA YHFDLSGTAFG +P L +GIIDI+F R C G + +E SNP Y
Sbjct: 17 PVAPYHFDLSGTAFGRLAKPGLNDRLRHSGIIDIEFTRVPCEFPGLKIGFHVEEYSNPVY 196
Query: 184 LAVLVEFEXXDGDVXQVDIXEA 249
AVLVE+E DGDV QVD+ E+
Sbjct: 197 FAVLVEYEDGDGDVVQVDLMES 262
Score = 44.1 bits (90), Expect(2) = 2e-029
Identities = 17/34 (50%), Positives = 19/34 (55%)
Frame = +1 / +2
Query: 256 GWWMPMRXSWGXXWRMDSKRXLQXXXSLRXXXES 357
G W MR SWG WR+DS LQ S+R ES
Sbjct: 278 GKWTRMRESWGSVWRLDSNHRLQAPFSIRIRNES 379
>gb|CK122346.1|CK122346 BES1824102p12 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010P122 5-PRIME, mRNA sequence
Length = 717
Score = 102 bits (218), Expect(2) = 3e-029
Identities = 44/82 (53%), Positives = 52/82 (63%)
Frame = +1 / +1
Query: 4 PVAKYHFDLSGTAFGGXXQPXXXXELXXAGIIDIQFRRXXCXXXGQXVTXXIEHGSNPXY 183
PVA YHFDLSGTAFG +P L +GIIDI+F R C G + +E SNP Y
Sbjct: 145 PVAPYHFDLSGTAFGRLAKPGLNDRLRHSGIIDIEFTRVPCEFPGLKIGFHVEEYSNPVY 324
Query: 184 LAVLVEFEXXDGDVXQVDIXEA 249
AVLVE+E DGDV QVD+ E+
Sbjct: 325 FAVLVEYEDGDGDVVQVDLMES 390
Score = 44.1 bits (90), Expect(2) = 3e-029
Identities = 17/34 (50%), Positives = 19/34 (55%)
Frame = +1 / +1
Query: 256 GWWMPMRXSWGXXWRMDSKRXLQXXXSLRXXXES 357
G W MR SWG WR+DS LQ S+R ES
Sbjct: 406 GKWTRMRESWGSVWRLDSNHRLQAPFSIRIRNES 507
>gb|CV054003.1|CV054003 BNEL105f8 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL105f8 5' similar to Oryza sativa
beta-expansin, mRNA sequence
Length = 702
Score = 112 bits (239), Expect(2) = 1e-028
Identities = 46/85 (54%), Positives = 58/85 (68%)
Frame = +1 / +3
Query: 4 PVAKYHFDLSGTAFGGXXQPXXXXELXXAGIIDIQFRRXXCXXXGQXVTXXIEHGSNPXY 183
PV++YHFDLSGTAFG + EL AGII++QF+R C G VT +E GSNP Y
Sbjct: 369 PVSRYHFDLSGTAFGAMAKYGRNDELRHAGIINMQFKRVPCQYPGLTVTFHVEEGSNPFY 548
Query: 184 LAVLVEFEXXDGDVXQVDIXEANSG 258
+A+LVE+E DGDV Q+DI E+ G
Sbjct: 549 MAILVEYENGDGDVKQLDIMESRPG 623
Score = 32.2 bits (64), Expect(2) = 1e-028
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1 / +3
Query: 253 SGWWMPMRXSWGXXWRM 303
+G W+PM+ SW WRM
Sbjct: 651 TGQWVPMKESWXSIWRM 701
>gb|BF253787.2|BF253787 HVSMEf0002C01f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0002C01f, mRNA sequence
Length = 823
Score = 108 bits (231), Expect(2) = 3e-028
Identities = 47/85 (55%), Positives = 53/85 (62%)
Frame = +1 / +3
Query: 4 PVAKYHFDLSGTAFGGXXQPXXXXELXXAGIIDIQFRRXXCXXXGQXVTXXIEHGSNPXY 183
PVA YHFDLSGTAFG +P EL AGIIDIQF R C G V +E GSN Y
Sbjct: 30 PVAPYHFDLSGTAFGKLAKPGRNDELRHAGIIDIQFTRVACEFPGLKVGFHVEEGSNAVY 209
Query: 184 LAVLVEFEXXDGDVXQVDIXEANSG 258
+A+LVE+E DGDV VD+ E G
Sbjct: 210 MAILVEYENGDGDVVHVDLMEYGRG 284
Score = 35.0 bits (70), Expect(2) = 3e-028
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +1 / +3
Query: 256 GWWMPMRXSWGXXWRMDSKRXLQXXXSLRXXXE 354
G W PM SWG WR+ +Q S+R E
Sbjct: 297 GRWTPMLKSWGSIWRLYYNHGIQTPYSIRIRCE 395
>gb|AV928430.1|AV928430 AV928430 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basdg18 3', mRNA sequence
Length = 704
Score = 122 bits (260), Expect = 1e-027
Identities = 51/94 (54%), Positives = 60/94 (63%)
Frame = +1 / -2
Query: 76 ELXXAGIIDIQFRRXXCXXXGQXVTXXIEHGSNPXYLAVLVEFEXXDGDVXQVDIXEANS 255
+L +GIIDIQFRR C G + + GSN YLAVL+E+E DGDV QVD+ EANS
Sbjct: 703 KLRHSGIIDIQFRRVPCNFPGLKINFHVVEGSNAVYLAVLIEYEDMDGDVIQVDMKEANS 524
Query: 256 GWWMPMRXSWGXXWRMDSKRXLQXXXSLRXXXES 357
G WM MR SWG WRMDS LQ S+R +S
Sbjct: 523 GSWMAMRESWGSIWRMDSNHRLQGPFSMRITSDS 422
>gb|CV063217.1|CV063217 BNEL87h3 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL87h3 5' similar to Oryza sativa
beta-expansin, mRNA sequence
Length = 701
Score = 109 bits (232), Expect(2) = 3e-027
Identities = 45/85 (52%), Positives = 57/85 (67%)
Frame = +1 / +3
Query: 4 PVAKYHFDLSGTAFGGXXQPXXXXELXXAGIIDIQFRRXXCXXXGQXVTXXIEHGSNPXY 183
PV++YHFDLSGTAFG + EL AGII++QF+R C VT +E GSNP Y
Sbjct: 375 PVSRYHFDLSGTAFGAMAKYGRNDELRHAGIINMQFKRVPCQYPXLTVTFHVEEGSNPFY 554
Query: 184 LAVLVEFEXXDGDVXQVDIXEANSG 258
+A+LVE+E DGDV Q+DI E+ G
Sbjct: 555 MAILVEYENGDGDVKQLDIMESRPG 629
Score = 30.9 bits (61), Expect(2) = 3e-027
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +1 / +3
Query: 253 SGWWMPMRXSWGXXW 297
+G W+PM+ SWG W
Sbjct: 657 TGQWVPMKESWGSIW 701
>gb|BE196421.3|BE196421 HVSMEh0092D24f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0092D24f, mRNA sequence
Length = 901
Score = 73.0 bits (153), Expect(2) = 6e-027
Identities = 32/64 (50%), Positives = 35/64 (54%)
Frame = +1 / +3
Query: 145 VTXXIEHGSNPXYLAVLVEFEXXDGDVXQVDIXEANSGWWMPMRXSWGXXWRMDSKRXLQ 324
VT +E SNP Y AVL E+E DGDV Q AN G W PMR SWG W +D LQ
Sbjct: 489 VTFHVEQXSNPVYFAVLGEYEDGDGDVVQGGPNGANFGTWTPMRESWGSIWGLDFGHRLQ 668
Query: 325 XXXS 336
S
Sbjct: 669 APFS 680
Score = 66.1 bits (138), Expect(2) = 6e-027
Identities = 26/41 (63%), Positives = 30/41 (73%)
Frame = +1 / +1
Query: 4 PVAKYHFDLSGTAFGGXXQPXXXXELXXAGIIDIQFRRXXC 126
PVAKYHFDLSGTAFG +P +L +GIIDIQF+R C
Sbjct: 349 PVAKYHFDLSGTAFGAMAKPGLSEKLRHSGIIDIQFKRVPC 471
>gb|BF257093.3|BF257093 HVSMEf0011N11f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0011N11f, mRNA sequence
Length = 816
Score = 116 bits (249), Expect = 4e-026
Identities = 43/97 (44%), Positives = 61/97 (62%)
Frame = +1 / +2
Query: 19 HFDLSGTAFGGXXQPXXXXELXXAGIIDIQFRRXXCXXXGQXVTXXIEHGSNPXYLAVLV 198
HFD+SGT+ G +P +L +GI+ IQ++R C G + ++ GSNP YL VL+
Sbjct: 218 HFDMSGTSMGAMAKPGMADKLRASGIVKIQYKRVPCKYPGMNIAFKVDQGSNPFYLEVLI 397
Query: 199 EFEXXDGDVXQVDIXEANSGWWMPMRXSWGXXWRMDS 309
EFE DGD+ VD+ EAN G W PM +WG +R++S
Sbjct: 398 EFEDDDGDLNTVDLMEANCGTWTPMVQNWGALYRLNS 508
>gb|CA019924.1|CA019924 HV13L18r HV Hordeum vulgare subsp. vulgare cDNA clone HV13L18
5-PRIME, mRNA sequence
Length = 549
Score = 116 bits (249), Expect = 4e-026
Identities = 43/97 (44%), Positives = 61/97 (62%)
Frame = +1 / +3
Query: 19 HFDLSGTAFGGXXQPXXXXELXXAGIIDIQFRRXXCXXXGQXVTXXIEHGSNPXYLAVLV 198
HFD+SGT+ G +P +L +GI+ IQ++R C G + ++ GSNP YL VL+
Sbjct: 234 HFDMSGTSMGAMAKPGMADKLRASGIVKIQYKRVPCKYPGMNIAFKVDQGSNPFYLEVLI 413
Query: 199 EFEXXDGDVXQVDIXEANSGWWMPMRXSWGXXWRMDS 309
EFE DGD+ VD+ EAN G W PM +WG +R++S
Sbjct: 414 EFEDDDGDLNTVDLMEANCGTWTPMVQNWGALYRLNS 524
>gb|BE454367.2|BE454367 HVSMEh0093N18f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0093N18f, mRNA sequence
Length = 870
Score = 102 bits (218), Expect(2) = 5e-026
Identities = 44/82 (53%), Positives = 52/82 (63%)
Frame = +1 / +1
Query: 4 PVAKYHFDLSGTAFGGXXQPXXXXELXXAGIIDIQFRRXXCXXXGQXVTXXIEHGSNPXY 183
PVA YHFDLSGTAFG +P L +GIIDI+F R C G + +E SNP Y
Sbjct: 28 PVAPYHFDLSGTAFGRLAKPGLNDRLRHSGIIDIEFTRVPCEFPGLKIGFHVEEYSNPVY 207
Query: 184 LAVLVEFEXXDGDVXQVDIXEA 249
AVLVE+E DGDV QVD+ E+
Sbjct: 208 FAVLVEYEDGDGDVVQVDLMES 273
Score = 33.1 bits (66), Expect(2) = 5e-026
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +1 / +1
Query: 256 GWWMPMRXSWGXXWRMDSKRXLQ 324
G W MR SWG WR++ LQ
Sbjct: 289 GKWTRMRESWGSVWRLNCNHRLQ 357
>gb|AV917082.1|AV917082 AV917082 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20l09 5', mRNA sequence
Length = 323
Score = 112 bits (239), Expect(2) = 6e-026
Identities = 48/85 (56%), Positives = 55/85 (64%)
Frame = +1 / +2
Query: 4 PVAKYHFDLSGTAFGGXXQPXXXXELXXAGIIDIQFRRXXCXXXGQXVTXXIEHGSNPXY 183
PVA YHFDLSGTAFG +P EL AGIIDIQF R C G V +E GSN Y
Sbjct: 20 PVAPYHFDLSGTAFGKLAKPGRNDELRHAGIIDIQFTRVACEFPGLKVGFHVEEGSNAVY 199
Query: 184 LAVLVEFEXXDGDVXQVDIXEANSG 258
+A+LVE+E DGDV QVD+ E+ G
Sbjct: 200 MAILVEYENGDGDVVQVDLMESGRG 274
Score = 21.7 bits (41), Expect(2) = 6e-026
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +1 / +2
Query: 256 GWWMPMRXSWG 288
G W MR SWG
Sbjct: 287 GRWTRMRESWG 319
>gb|CA019997.1|CA019997 HV14A15r HV Hordeum vulgare subsp. vulgare cDNA clone HV14A15
5-PRIME, mRNA sequence
Length = 616
Score = 112 bits (239), Expect(2) = 1e-025
Identities = 48/85 (56%), Positives = 55/85 (64%)
Frame = +1 / +1
Query: 4 PVAKYHFDLSGTAFGGXXQPXXXXELXXAGIIDIQFRRXXCXXXGQXVTXXIEHGSNPXY 183
PVA YHFDLSGTAFG +P EL AGIIDIQF R C G V +E GSN Y
Sbjct: 310 PVAPYHFDLSGTAFGKLAKPGRNDELRHAGIIDIQFTRVACEFPGLKVGFHVEEGSNAVY 489
Query: 184 LAVLVEFEXXDGDVXQVDIXEANSG 258
+A+LVE+E DGDV QVD+ E+ G
Sbjct: 490 MAILVEYENGDGDVVQVDLMESGRG 564
Score = 21.7 bits (41), Expect(2) = 1e-025
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +1 / +1
Query: 256 GWWMPMRXSWG 288
G W MR SWG
Sbjct: 577 GRWTRMRESWG 609
>gb|BQ465138.1|BQ465138 HU02M06r HU Hordeum vulgare subsp. vulgare cDNA clone HU02M06
5-PRIME, mRNA sequence
Length = 623
Score = 112 bits (239), Expect(2) = 1e-025
Identities = 48/85 (56%), Positives = 55/85 (64%)
Frame = +1 / +2
Query: 4 PVAKYHFDLSGTAFGGXXQPXXXXELXXAGIIDIQFRRXXCXXXGQXVTXXIEHGSNPXY 183
PVA YHFDLSGTAFG +P EL AGIIDIQF R C G V +E GSN Y
Sbjct: 227 PVAPYHFDLSGTAFGKLAKPGRNDELRHAGIIDIQFTRVACEFPGLKVGFHVEEGSNAVY 406
Query: 184 LAVLVEFEXXDGDVXQVDIXEANSG 258
+A+LVE+E DGDV QVD+ E+ G
Sbjct: 407 MAILVEYENGDGDVVQVDLMESGRG 481
Score = 21.7 bits (41), Expect(2) = 1e-025
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +1 / +2
Query: 256 GWWMPMRXSWG 288
G W MR SWG
Sbjct: 494 GRWTRMRESWG 526
>gb|BJ463021.1|BJ463021 BJ463021 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags25g15 5', mRNA sequence
Length = 532
Score = 113 bits (242), Expect = 3e-025
Identities = 45/113 (39%), Positives = 63/113 (55%)
Frame = +1 / +3
Query: 19 HFDLSGTAFGGXXQPXXXXELXXAGIIDIQFRRXXCXXXGQXVTXXIEHGSNPXYLAVLV 198
HFD+SGTA G +P +L G+I +Q++R C G + ++ GSNP Y L+
Sbjct: 162 HFDMSGTALGAMAKPGMADKLRAGGVIRMQYKRVPCKYPGVNIAFRVDQGSNPFYFKTLI 341
Query: 199 EFEXXDGDVXQVDIXEANSGWWMPMRXSWGXXWRMDSKRXLQXXXSLRXXXES 357
EFE DGD+ V + EA SG W M WG WR+++ L+ SLR +S
Sbjct: 342 EFEDDDGDLKAVALKEAGSGAWTQMTQDWGALWRLNNGNRLRAPFSLRLTXDS 500
>gb|BI950777.1|BI950777 HVSMEl0023C15f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0023C15f, mRNA sequence
Length = 986
Score = 112 bits (239), Expect = 9e-025
Identities = 43/113 (38%), Positives = 62/113 (54%)
Frame = +1 / +3
Query: 19 HFDLSGTAFGGXXQPXXXXELXXAGIIDIQFRRXXCXXXGQXVTXXIEHGSNPXYLAVLV 198
HFD+SGTA G +P +L G+I +Q++R C G + ++ GSNP Y L+
Sbjct: 168 HFDMSGTALGAMAKPGMADKLRAGGVIRMQYKRVPCKYPGVNIAFKVDQGSNPFYFKTLI 347
Query: 199 EFEXXDGDVXQVDIXEANSGWWMPMRXSWGXXWRMDSKRXLQXXXSLRXXXES 357
EFE DGD+ V + EA SG W M WG WR+++ L+ SL+ +S
Sbjct: 348 EFEDDDGDLKAVALKEAGSGAWTQMTQDWGALWRLNNGNRLRAPFSLQLTSDS 506
>gb|BU967134.1|BU967134 HB03G05r BC Hordeum vulgare subsp. vulgare cDNA clone HB03G05
5-PRIME, mRNA sequence
Length = 430
Score = 112 bits (239), Expect = 9e-025
Identities = 46/85 (54%), Positives = 58/85 (68%)
Frame = +1 / +1
Query: 4 PVAKYHFDLSGTAFGGXXQPXXXXELXXAGIIDIQFRRXXCXXXGQXVTXXIEHGSNPXY 183
PV++YHFDLSGTAFG + EL AGII++QF+R C G VT +E GSNP Y
Sbjct: 124 PVSRYHFDLSGTAFGAMAKYGRNDELRHAGIINMQFKRVPCQYPGLTVTFHVEEGSNPFY 303
Query: 184 LAVLVEFEXXDGDVXQVDIXEANSG 258
+A+LVE+E DGDV Q+DI E+ G
Sbjct: 304 MAILVEYENGDGDVKQLDIMESRPG 378
>gb|BU981055.1|BU981055 HA22I03r HA Hordeum vulgare subsp. vulgare cDNA clone HA22I03
5-PRIME, mRNA sequence
Length = 597
Score = 112 bits (239), Expect = 9e-025
Identities = 46/85 (54%), Positives = 58/85 (68%)
Frame = +1 / +1
Query: 4 PVAKYHFDLSGTAFGGXXQPXXXXELXXAGIIDIQFRRXXCXXXGQXVTXXIEHGSNPXY 183
PV++YHFDLSGTAFG + EL AGII++QF+R C G VT +E GSNP Y
Sbjct: 322 PVSRYHFDLSGTAFGAMAKYGRNDELRHAGIINMQFKRVPCQYPGLTVTFHVEEGSNPFY 501
Query: 184 LAVLVEFEXXDGDVXQVDIXEANSG 258
+A+LVE+E DGDV Q+DI E+ G
Sbjct: 502 MAILVEYENGDGDVKQLDIMESRPG 576
>gb|CV063939.1|CV063939 BNEL94h5 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL94h5 5' similar to Oryza sativa
beta-expansin, mRNA sequence
Length = 661
Score = 112 bits (239), Expect = 9e-025
Identities = 46/85 (54%), Positives = 58/85 (68%)
Frame = +1 / +2
Query: 4 PVAKYHFDLSGTAFGGXXQPXXXXELXXAGIIDIQFRRXXCXXXGQXVTXXIEHGSNPXY 183
PV++YHFDLSGTAFG + EL AGII++QF+R C G VT +E GSNP Y
Sbjct: 368 PVSRYHFDLSGTAFGAMAKYGRNDELRHAGIINMQFKRVPCQYPGLTVTFHVEEGSNPFY 547
Query: 184 LAVLVEFEXXDGDVXQVDIXEANSG 258
+A+LVE+E DGDV Q+DI E+ G
Sbjct: 548 MAILVEYENGDGDVKQLDIMESRPG 622
>gb|BI958784.1|BI958784 HVSMEn0016J13f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0016J13f, mRNA sequence
Length = 656
Score = 109 bits (233), Expect = 6e-024
Identities = 46/78 (58%), Positives = 52/78 (66%)
Frame = +1 / +3
Query: 4 PVAKYHFDLSGTAFGGXXQPXXXXELXXAGIIDIQFRRXXCXXXGQXVTXXIEHGSNPXY 183
PVAKYHFDLSGTAFG +P +L +GIIDIQF+R C G VT +E GSNP Y
Sbjct: 423 PVAKYHFDLSGTAFGAMAKPGLSEKLRHSGIIDIQFKRVPCEFPGLKVTFHVEQGSNPVY 602
Query: 184 LAVLVEFEXXDGDVXQVD 237
AVLVE+E DGD VD
Sbjct: 603 FAVLVEYEDGDGDXVXVD 656
>gb|BQ458429.1|BQ458429 HA05E07r HA Hordeum vulgare subsp. vulgare cDNA clone HA05E07
5-PRIME, mRNA sequence
Length = 504
Score = 109 bits (233), Expect = 6e-024
Identities = 45/81 (55%), Positives = 56/81 (69%)
Frame = +1 / +2
Query: 4 PVAKYHFDLSGTAFGGXXQPXXXXELXXAGIIDIQFRRXXCXXXGQXVTXXIEHGSNPXY 183
PV++YHFDLSGTAFG + EL AGII++QF+R C G VT +E GSNP Y
Sbjct: 260 PVSRYHFDLSGTAFGAMAKYGRNDELRHAGIINMQFKRVPCQYPGLTVTFHVEEGSNPFY 439
Query: 184 LAVLVEFEXXDGDVXQVDIXE 246
+A+LVE+E DGDV Q+DI E
Sbjct: 440 MAILVEYENGDGDVKQLDIME 502
>gb|BI957603.1|BI957603 HVSMEn0010F11f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0010F11f, mRNA sequence
Length = 630
Score = 109 bits (232), Expect = 8e-024
Identities = 46/82 (56%), Positives = 55/82 (67%)
Frame = +1 / +1
Query: 4 PVAKYHFDLSGTAFGGXXQPXXXXELXXAGIIDIQFRRXXCXXXGQXVTXXIEHGSNPXY 183
PVAKYHFDLSGTAFG +P +L +GIIDIQF+R C G VT +E GSNP Y
Sbjct: 385 PVAKYHFDLSGTAFGAMAKPGLSEKLRHSGIIDIQFKRVPCEFPGLKVTFHVEQGSNPVY 564
Query: 184 LAVLVEFEXXDGDVXQVDIXEA 249
VLVE+ DG++ QVD+ EA
Sbjct: 565 FPVLVEY*DGDGNLVQVDLMEA 630
>gb|CV055940.1|CV055940 BNEL12B5 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL12B5 5' similar to Oryza sativa
beta-expansin, mRNA sequence
Length = 614
Score = 80.8 bits (170), Expect(2) = 3e-023
Identities = 33/61 (54%), Positives = 42/61 (68%)
Frame = +1 / -2
Query: 76 ELXXAGIIDIQFRRXXCXXXGQXVTXXIEHGSNPXYLAVLVEFEXXDGDVXQVDIXEANS 255
EL AGII++QF+R C G VT +E GSNP Y+A+LVE+E DGDV Q+DI E+
Sbjct: 568 ELRHAGIINMQFKRVPCQYPGLTVTFHVEEGSNPFYMAILVEYENGDGDVKQLDIMESRP 389
Query: 256 G 258
G
Sbjct: 388 G 386
Score = 45.5 bits (93), Expect(2) = 3e-023
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +1 / -2
Query: 253 SGWWMPMRXSWGXXWRMDSKRXLQXXXSLRXXXES 357
+G W+PM+ SWG WRMD+ + SLR ES
Sbjct: 358 TGQWVPMKESWGSIWRMDAHHPMHGPFSLRVTNES 254
>gb|BM098205.2|BM098205 EBpi03_SQ002_N14_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ002_N14 5', mRNA sequence
Length = 550
Score = 93.2 bits (197), Expect(2) = 4e-023
Identities = 37/76 (48%), Positives = 48/76 (63%)
Frame = +1 / +1
Query: 19 HFDLSGTAFGGXXQPXXXXELXXAGIIDIQFRRXXCXXXGQXVTXXIEHGSNPXYLAVLV 198
HFDLSGTAFGG +P +L AG + IQ+ R C G V ++ GSNP YLAVL+
Sbjct: 58 HFDLSGTAFGGMAKPGQADQLRAAGRLQIQYTRVPCNWRGMHVAFKVDAGSNPYYLAVLI 237
Query: 199 EFEXXDGDVXQVDIXE 246
E+E DGD+ V++ E
Sbjct: 238 EYEDGDGDLSSVELME 285
Score = 32.2 bits (64), Expect(2) = 4e-023
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +1 / +1
Query: 250 NSGWWMPMRXSWGXXWRMDSKRXLQXXXSLRXXXES 357
N W M SWG WR +S L S+R S
Sbjct: 295 NGAGWTKMDRSWGAVWRYNSGPMLHAPFSVRLTSSS 402
>gb|BU980984.1|BU980984 HA22E18r HA Hordeum vulgare subsp. vulgare cDNA clone HA22E18
5-PRIME, mRNA sequence
Length = 567
Score = 93.2 bits (197), Expect(2) = 4e-023
Identities = 37/76 (48%), Positives = 48/76 (63%)
Frame = +1 / +3
Query: 19 HFDLSGTAFGGXXQPXXXXELXXAGIIDIQFRRXXCXXXGQXVTXXIEHGSNPXYLAVLV 198
HFDLSGTAFGG +P +L AG + IQ+ R C G V ++ GSNP YLAVL+
Sbjct: 72 HFDLSGTAFGGMAKPGQADQLRAAGRLQIQYTRVPCNWRGMHVAFKVDAGSNPYYLAVLI 251
Query: 199 EFEXXDGDVXQVDIXE 246
E+E DGD+ V++ E
Sbjct: 252 EYEDGDGDLSSVELME 299
Score = 32.2 bits (64), Expect(2) = 4e-023
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +1 / +3
Query: 250 NSGWWMPMRXSWGXXWRMDSKRXLQXXXSLRXXXES 357
N W M SWG WR +S L S+R S
Sbjct: 309 NGAGWTKMDRSWGAVWRYNSGPMLHAPFSVRLTSSS 416
>gb|BI960458.1|BI960458 HVSMEn0024K16f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0024K16f, mRNA sequence
Length = 677
Score = 105 bits (224), Expect = 1e-022
Identities = 45/79 (56%), Positives = 52/79 (65%)
Frame = +1 / +2
Query: 4 PVAKYHFDLSGTAFGGXXQPXXXXELXXAGIIDIQFRRXXCXXXGQXVTXXIEHGSNPXY 183
PVAKYHFDLSGTAFG +P +L +GIIDIQF+R C G VT +E GSNP Y
Sbjct: 437 PVAKYHFDLSGTAFGAMAKPGLSEKLRHSGIIDIQFKRVPCEFPGLKVTXHVEQGSNPVY 616
Query: 184 LAVLVEFEXXDGDVXQVDI 240
VLVE+ D D QVD+
Sbjct: 617 FXVLVEYXDGDXDXVQVDL 673
>gb|CV060611.1|CV060611 BNEL5B4 Barley EST endosperm library Hordeum vulgare subsp. vulgare
cDNA clone BNEL5B4 5' similar to Oryza sativa
beta-expansin, mRNA sequence
Length = 634
Score = 104 bits (221), Expect = 3e-022
Identities = 43/84 (51%), Positives = 56/84 (66%)
Frame = +1 / +3
Query: 4 PVAKYHFDLSGTAFGGXXQPXXXXELXXAGIIDIQFRRXXCXXXGQXVTXXIEHGSNPXY 183
PV++YHFDLSGTAFG + EL AGII++QF+R C G VT +E SNP Y
Sbjct: 369 PVSRYHFDLSGTAFGAMAKYGRNDELRHAGIINMQFKRVPCQYPGLTVTFHVEEXSNPFY 548
Query: 184 LAVLVEFEXXDGDVXQVDIXEANS 255
+A+L E+E DGDV Q+DI E+ +
Sbjct: 549 MAILGEYENGDGDVKQLDIMESRT 620
>gb|CV060955.1|CV060955 BNEL63c5 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL63c5 5' similar to Oryza sativa
beta-expansin, mRNA sequence
Length = 634
Score = 82.6 bits (174), Expect(3) = 3e-022
Identities = 35/73 (47%), Positives = 45/73 (61%)
Frame = +1 / +3
Query: 40 AFGGXXQPXXXXELXXAGIIDIQFRRXXCXXXGQXVTXXIEHGSNPXYLAVLVEFEXXDG 219
AFGG + EL AGII++QF+R C VT +E GSNP Y+ +LVE+E DG
Sbjct: 348 AFGGMAKYGRNDELRHAGIINMQFKRVPCQYPXLTVTFHVEEGSNPFYMGILVEYENGDG 527
Query: 220 DVXQVDIXEANSG 258
DV Q+DI E+ G
Sbjct: 528 DVKQLDIMESRPG 566
Score = 30.4 bits (60), Expect(3) = 3e-022
Identities = 10/12 (83%), Positives = 12/12 (100%)
Frame = +1 / +2
Query: 4 PVAKYHFDLSGT 39
PV++YHFDLSGT
Sbjct: 311 PVSRYHFDLSGT 346
Score = 26.3 bits (51), Expect(3) = 3e-022
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = +1 / +3
Query: 253 SGWWMPMRXSWG 288
+G W+PM+ SWG
Sbjct: 594 TGQWVPMKESWG 629
>gb|BQ459308.1|BQ459308 HA01I15r HA Hordeum vulgare subsp. vulgare cDNA clone HA01I15
5-PRIME, mRNA sequence
Length = 396
Score = 79.4 bits (167), Expect(2) = 4e-022
Identities = 32/61 (52%), Positives = 42/61 (68%)
Frame = +1 / +2
Query: 76 ELXXAGIIDIQFRRXXCXXXGQXVTXXIEHGSNPXYLAVLVEFEXXDGDVXQVDIXEANS 255
EL AGII++QF+R C G VT +E GSNP Y+A+LVE++ DGDV Q+DI E+
Sbjct: 14 ELRHAGIINMQFKRVPCQYPGLTVTFHVEEGSNPFYMAILVEYDNGDGDVKQLDIMESRP 193
Query: 256 G 258
G
Sbjct: 194 G 196
Score = 42.3 bits (86), Expect(2) = 4e-022
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +1 / +2
Query: 253 SGWWMPMRXSWGXXWRMDSKRXLQXXXSLRXXXES 357
+G W+PM+ SWG WRMD+ ++ LR ES
Sbjct: 224 TGEWVPMKESWGSIWRMDAHHPMRGPFWLRVTNES 328
>gb|CB880652.1|CB880652 HM07E17w HM Hordeum vulgare subsp. vulgare cDNA clone HM07E17
3-PRIME, mRNA sequence
Length = 562
Score = 103 bits (219), Expect = 5e-022
Identities = 41/67 (61%), Positives = 46/67 (68%)
Frame = +1 / -2
Query: 157 IEHGSNPXYLAVLVEFEXXDGDVXQVDIXEANSGWWMPMRXSWGXXWRMDSKRXLQXXXS 336
+E GSNP Y AVLVE+E DGDV QVD+ EANSG W PMR SWG WR+DS LQ S
Sbjct: 558 VEQGSNPVYFAVLVEYEDGDGDVVQVDLMEANSGTWTPMRESWGSIWRLDSGHRLQAPFS 379
Query: 337 LRXXXES 357
+R ES
Sbjct: 378 MRITNES 358
>gb|CB881234.1|CB881234 HM09C23w HM Hordeum vulgare subsp. vulgare cDNA clone HM09C23
3-PRIME, mRNA sequence
Length = 563
Score = 103 bits (219), Expect = 5e-022
Identities = 41/67 (61%), Positives = 46/67 (68%)
Frame = +1 / -2
Query: 157 IEHGSNPXYLAVLVEFEXXDGDVXQVDIXEANSGWWMPMRXSWGXXWRMDSKRXLQXXXS 336
+E GSNP Y AVLVE+E DGDV QVD+ EANSG W PMR SWG WR+DS LQ S
Sbjct: 559 VEQGSNPVYFAVLVEYEDGDGDVVQVDLMEANSGTWTPMRESWGSIWRLDSGHRLQAPFS 380
Query: 337 LRXXXES 357
+R ES
Sbjct: 379 MRITNES 359
>gb|BG368652.1|BG368652 HVSMEi0020B24f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0020B24f, mRNA sequence
Length = 679
Score = 93.2 bits (197), Expect(2) = 9e-022
Identities = 37/76 (48%), Positives = 48/76 (63%)
Frame = +1 / +1
Query: 19 HFDLSGTAFGGXXQPXXXXELXXAGIIDIQFRRXXCXXXGQXVTXXIEHGSNPXYLAVLV 198
HFDLSGTAFGG +P +L AG + IQ+ R C G V ++ GSNP YLAVL+
Sbjct: 376 HFDLSGTAFGGMAKPGQADQLRAAGRLQIQYTRFPCNWRGMHVAFKVDAGSNPYYLAVLI 555
Query: 199 EFEXXDGDVXQVDIXE 246
E+E DGD+ V++ E
Sbjct: 556 EYEDGDGDLSSVELME 603
Score = 28.6 bits (56), Expect(2) = 9e-022
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +1 / +1
Query: 250 NSGWWMPMRXSWGXXWRMDSK 312
N W M SWG WR +S+
Sbjct: 613 NGAGWTKMDPSWGAVWRYNSR 675
>gb|BG369116.2|BG369116 HVSMEi0021M10f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0021M10f, mRNA sequence
Length = 609
Score = 87.2 bits (184), Expect(2) = 3e-021
Identities = 35/76 (46%), Positives = 46/76 (60%)
Frame = +1 / +1
Query: 19 HFDLSGTAFGGXXQPXXXXELXXAGIIDIQFRRXXCXXXGQXVTXXIEHGSNPXYLAVLV 198
HFDLSGTAFGG +P +L G + IQ+ R C G T ++ G NP YLAVL+
Sbjct: 31 HFDLSGTAFGGMAKPGQADQLCAGGRLQIQYTRVPCNWRGMHRTFKVDAGFNPYYLAVLI 210
Query: 199 EFEXXDGDVXQVDIXE 246
E+E DGD+ V++ E
Sbjct: 211 EYEDGDGDLSSVELME 258
Score = 32.2 bits (64), Expect(2) = 3e-021
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +1 / +1
Query: 250 NSGWWMPMRXSWGXXWRMDSKRXLQXXXSLRXXXES 357
N W M SWG WR +S L S+R S
Sbjct: 268 NGAGWTKMDRSWGAVWRYNSGPMLHAPFSVRLTSSS 375
>gb|BF256653.2|BF256653 HVSMEf0010J19f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0010J19f, mRNA sequence
Length = 841
Score = 100 bits (213), Expect = 3e-021
Identities = 44/78 (56%), Positives = 49/78 (62%)
Frame = +1 / +2
Query: 4 PVAKYHFDLSGTAFGGXXQPXXXXELXXAGIIDIQFRRXXCXXXGQXVTXXIEHGSNPXY 183
PVA YHFDLSGTAFG +P EL AGIIDIQF R C G V +E GSN Y
Sbjct: 527 PVAPYHFDLSGTAFGKLAKPGRNDELRHAGIIDIQFTRVACEFPGLKVGFHVEEGSNAVY 706
Query: 184 LAVLVEFEXXDGDVXQVD 237
+A+ VE E DGD+ QVD
Sbjct: 707 MAIPVEVENRDGDLVQVD 760
>gb|BU995090.1|BU995090 HM09C23r HM Hordeum vulgare subsp. vulgare cDNA clone HM09C23
5-PRIME, mRNA sequence
Length = 653
Score = 99.1 bits (210), Expect = 9e-021
Identities = 41/68 (60%), Positives = 47/68 (69%)
Frame = +1 / +1
Query: 4 PVAKYHFDLSGTAFGGXXQPXXXXELXXAGIIDIQFRRXXCXXXGQXVTXXIEHGSNPXY 183
PVAKYHFDLSGTAFG +P +L +GIIDIQF+R C G VT +E GSNP Y
Sbjct: 445 PVAKYHFDLSGTAFGAMAKPGLSEKLRHSGIIDIQFKRVPCEFPGLKVTFHVEQGSNPVY 624
Query: 184 LAVLVEFE 207
AVLVE+E
Sbjct: 625 FAVLVEYE 648
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 115,880,130
Number of Sequences: 312970
Number of extensions: 915154
Number of successful extensions: 76613
Number of sequences better than 1.0e-020: 65
length of database: 58,378,179
effective HSP length: 49
effective length of database: 43,042,649
effective search space used: 2969942781
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)