TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAY3d02.yg.2.1
(541 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV833484.1|AV833484 AV833484 K. Sato unpublished cDNA li... 309 6e-084
gb|BI952657.1|BI952657 HVSMEm0007E17f Hordeum vulgare green... 272 2e-073
gb|BG343192.1|BG343192 HVSMEg0005A20f Hordeum vulgare pre-a... 254 3e-067
gb|BF626949.2|BF626949 HVSMEb0001M13f Hordeum vulgare seedl... 250 4e-066
gb|AL508506.1|AL508506 AL508506 Hordeum vulgare Barke devel... 190 1e-054
gb|BF624761.3|BF624761 HVSMEa0017K20f Hordeum vulgare seedl... 199 9e-053
gb|BU990132.1|BU990132 HF24C23r HF Hordeum vulgare subsp. v... 199 9e-053
gb|CK122337.1|CK122337 BES1824102p02 BES1824 Hordeum vulgar... 137 1e-051
gb|AV916387.1|AV916387 AV916387 K. Sato unpublished cDNA li... 137 1e-050
gb|AV913514.1|AV913514 AV913514 K. Sato unpublished cDNA li... 137 1e-050
gb|AV916990.1|AV916990 AV916990 K. Sato unpublished cDNA li... 137 5e-050
gb|BU978697.1|BU978697 HA14A09r HA Hordeum vulgare subsp. v... 127 9e-050
gb|BJ462621.1|BJ462621 BJ462621 K. Sato unpublished cDNA li... 137 9e-050
gb|BF621404.2|BF621404 HVSMEa0006M24f Hordeum vulgare seedl... 132 1e-049
gb|BU997151.1|BU997151 HI07B06r HI Hordeum vulgare subsp. v... 127 6e-049
gb|AL508422.1|AL508422 AL508422 Hordeum vulgare Barke devel... 193 8e-049
gb|AV915416.1|AV915416 AV915416 K. Sato unpublished cDNA li... 191 2e-048
gb|CA014891.1|CA014891 HT12K07r HT Hordeum vulgare subsp. v... 116 1e-047
gb|AV913799.1|AV913799 AV913799 K. Sato unpublished cDNA li... 137 9e-047
gb|BI778494.2|BI778494 EBro07_SQ003_H09_R root, 3 week, red... 125 9e-047
gb|BQ763070.1|BQ763070 EBro02_SQ007_H01_R root, 3 week, hyd... 131 2e-046
gb|BQ466003.1|BQ466003 HT01E20T HT Hordeum vulgare subsp. v... 131 2e-046
gb|BQ763048.1|BQ763048 EBro02_SQ007_C02_R root, 3 week, hyd... 137 5e-046
gb|AL503319.1|AL503319 AL503319 Hordeum vulgare Barke roots... 128 2e-044
gb|BU997000.1|BU997000 HI06J05r HI Hordeum vulgare subsp. v... 129 7e-044
gb|BJ451325.1|BJ451325 BJ451325 K. Sato unpublished cDNA li... 132 4e-043
gb|AV933093.1|AV933093 AV933093 K. Sato unpublished cDNA li... 119 9e-043
gb|CA023296.1|CA023296 HZ45M20r HZ Hordeum vulgare subsp. v... 131 1e-042
gb|CA012703.1|CA012703 HT06D02r HT Hordeum vulgare subsp. v... 118 1e-042
gb|CA013288.1|CA013288 HT07P04r HT Hordeum vulgare subsp. v... 118 1e-042
gb|CA014847.1|CA014847 HT12I07r HT Hordeum vulgare subsp. v... 118 1e-042
gb|CA015390.1|CA015390 HT14C16r HT Hordeum vulgare subsp. v... 118 1e-042
gb|BF627691.3|BF627691 HVSMEb0005I17f Hordeum vulgare seedl... 119 3e-041
gb|BQ472269.1|BQ472269 HV04O11r HV Hordeum vulgare subsp. v... 121 3e-041
gb|AV916192.1|AV916192 AV916192 K. Sato unpublished cDNA li... 137 6e-041
gb|BU995874.1|BU995874 HM11K09r HM Hordeum vulgare subsp. v... 131 8e-041
gb|AV923554.1|AV923554 AV923554 K. Sato unpublished cDNA li... 111 1e-040
gb|BJ447807.1|BJ447807 BJ447807 K. Sato unpublished cDNA li... 111 1e-040
gb|BF257586.2|BF257586 HVSMEf0013E13f Hordeum vulgare seedl... 116 1e-040
gb|BU985650.1|BU985650 HF08D13r HF Hordeum vulgare subsp. v... 117 1e-040
gb|CB882677.1|CB882677 HL02I17w HL Hordeum vulgare subsp. v... 104 3e-039
gb|BU998469.1|BU998469 HI11C15r HI Hordeum vulgare subsp. v... 155 6e-039
gb|BF620280.1|BF620280 HVSMEc0019E21f Hordeum vulgare seedl... 74 9e-039
gb|CA015072.1|CA015072 HT13C22r HT Hordeum vulgare subsp. v... 111 2e-038
gb|BU988606.1|BU988606 HF18C11r HF Hordeum vulgare subsp. v... 107 4e-038
gb|BU997130.1|BU997130 HI07A02r HI Hordeum vulgare subsp. v... 127 1e-037
gb|BE601754.2|BE601754 HVSMEh0099G19f Hordeum vulgare 5-45 ... 121 2e-037
gb|CA032870.1|CA032870 HX14G24r HX Hordeum vulgare subsp. v... 102 2e-036
gb|CA002958.1|CA002958 HS09A03r HS Hordeum vulgare subsp. v... 134 3e-036
gb|BI947104.1|BI947104 HVSMEl0003L04f Hordeum vulgare spike... 131 6e-036
gb|BE194110.2|BE194110 HVSMEh0084B07f Hordeum vulgare 5-45 ... 95 6e-036
gb|BF630973.2|BF630973 HVSMEb0014J12f Hordeum vulgare seedl... 133 2e-035
gb|BI949850.1|BI949850 HVSMEl0016H12f Hordeum vulgare spike... 99 3e-035
gb|CA007687.1|CA007687 HU08L11r HU Hordeum vulgare subsp. v... 94 4e-035
gb|BJ462504.1|BJ462504 BJ462504 K. Sato unpublished cDNA li... 131 2e-034
gb|CA003210.1|CA003210 HS09M01r HS Hordeum vulgare subsp. v... 134 2e-034
gb|BF621975.2|BF621975 HVSMEa0001G23f Hordeum vulgare seedl... 82 3e-034
gb|AV916601.1|AV916601 AV916601 K. Sato unpublished cDNA li... 129 5e-034
gb|BU984656.1|BU984656 HF04J11r HF Hordeum vulgare subsp. v... 127 5e-034
gb|BF258478.2|BF258478 HVSMEf0015N07f Hordeum vulgare seedl... 92 5e-034
gb|AV910207.1|AV910207 AV910207 K. Sato unpublished cDNA li... 125 1e-033
gb|BQ464194.1|BQ464194 HF01J17T HF Hordeum vulgare subsp. v... 125 1e-033
gb|BE194623.2|BE194623 HVSMEh0086E10f Hordeum vulgare 5-45 ... 129 3e-033
gb|AL503928.1|AL503928 AL503928 Hordeum vulgare Barke roots... 84 8e-033
gb|BQ468641.1|BQ468641 HM01N16T HM Hordeum vulgare subsp. v... 116 2e-032
gb|CA006709.1|CA006709 HU05H21r HU Hordeum vulgare subsp. v... 91 3e-032
gb|AL511502.1|AL511502 AL511502 Hordeum vulgare Barke devel... 129 4e-032
gb|CA007443.1|CA007443 HU07P14r HU Hordeum vulgare subsp. v... 137 4e-032
gb|BQ472678.1|BQ472678 HB01N04r BC Hordeum vulgare subsp. v... 116 1e-031
gb|BQ472621.1|BQ472621 HB01P17r BC Hordeum vulgare subsp. v... 116 1e-031
gb|CA026968.1|CA026968 HZ57H22r HZ Hordeum vulgare subsp. v... 120 2e-031
gb|CA024908.1|CA024908 HZ50K17r HZ Hordeum vulgare subsp. v... 84 5e-031
gb|AL504759.1|AL504759 AL504759 Hordeum vulgare Barke roots... 84 1e-030
gb|CA019629.1|CA019629 HV12J17r HV Hordeum vulgare subsp. v... 83 8e-030
gb|CA011612.1|CA011612 HT03A18r HT Hordeum vulgare subsp. v... 75 2e-029
gb|BF261482.1|BF261482 HV_CEa0001G11f Hordeum vulgare seedl... 57 2e-029
gb|BI947961.1|BI947961 HVSMEl0007J23f Hordeum vulgare spike... 108 4e-029
gb|BI952746.1|BI952746 HVSMEm0007J23f Hordeum vulgare green... 106 1e-028
gb|CA011965.1|CA011965 HT04A18r HT Hordeum vulgare subsp. v... 74 1e-028
gb|CA026718.1|CA026718 HZ56L20r HZ Hordeum vulgare subsp. v... 120 1e-028
gb|BQ468094.1|BQ468094 HR01O22r HR Hordeum vulgare subsp. v... 79 1e-028
gb|BQ472254.1|BQ472254 HV04N15r HV Hordeum vulgare subsp. v... 79 1e-028
gb|BU985599.1|BU985599 HF08B04r HF Hordeum vulgare subsp. v... 125 2e-028
gb|CA012694.1|CA012694 HT06C17r HT Hordeum vulgare subsp. v... 68 4e-028
gb|CA029214.1|CA029214 HZ64I22r HZ Hordeum vulgare subsp. v... 74 7e-028
gb|CB878975.1|CB878975 HP10H22T HP Hordeum vulgare subsp. v... 74 9e-028
gb|CA025312.1|CA025312 HZ51M10r HZ Hordeum vulgare subsp. v... 74 9e-028
gb|BQ469278.1|BQ469278 HM03P05r HM Hordeum vulgare subsp. v... 77 9e-028
gb|CA008162.1|CA008162 HU10B07r HU Hordeum vulgare subsp. v... 103 1e-027
gb|BI951286.1|BI951286 HVSMEl0025F23f Hordeum vulgare spike... 109 3e-027
gb|CA015316.1|CA015316 HT13P01r HT Hordeum vulgare subsp. v... 74 8e-027
gb|BF259454.2|BF259454 HVSMEf0019C12f Hordeum vulgare seedl... 74 8e-027
gb|AV924652.1|AV924652 AV924652 K. Sato unpublished cDNA li... 97 1e-026
gb|BF266938.1|BF266938 HV_CEa0016H19f Hordeum vulgare seedl... 70 2e-026
gb|CA012722.1|CA012722 HT06E02r HT Hordeum vulgare subsp. v... 70 1e-025
gb|AV910466.1|AV910466 AV910466 K. Sato unpublished cDNA li... 68 1e-025
gb|BM369697.2|BM369697 EBem07_SQ004_F17_R embryo, 28 DPA, n... 114 4e-025
gb|BI954049.1|BI954049 HVSMEm0015P21f Hordeum vulgare green... 70 9e-025
gb|BU976210.1|BU976210 HA03F10r HA Hordeum vulgare subsp. v... 99 2e-024
gb|AV916609.1|AV916609 AV916609 K. Sato unpublished cDNA li... 95 6e-024
gb|BU999785.1|BU999785 HI15M04r HI Hordeum vulgare subsp. v... 74 2e-023
gb|BQ462989.1|BQ462989 HI02K18r HI Hordeum vulgare subsp. v... 69 3e-023
gb|BU986349.1|BU986349 HF11I03r HF Hordeum vulgare subsp. v... 74 4e-023
gb|BQ466466.1|BQ466466 HT02J20r HT Hordeum vulgare subsp. v... 74 4e-023
gb|BG369589.1|BG369589 HVSMEi0025B15f Hordeum vulgare 20 DA... 57 2e-022
gb|BQ764147.1|BQ764147 EBan01_SQ005_A05_R anther, yellow st... 64 2e-022
gb|BF253874.2|BF253874 HVSMEf0002F19f Hordeum vulgare seedl... 92 3e-022
gb|CA001857.1|CA001857 HS05M20r HS Hordeum vulgare subsp. v... 102 1e-021
gb|BE558648.2|BE558648 HV_CEb0019M08f Hordeum vulgare seedl... 73 2e-021
gb|AL450905.1|AL450905 AL450905 Hordeum vulgare Barke etiol... 100 4e-021
>gb|AV833484.1|AV833484 AV833484 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare shoots germination Hordeum vulgare subsp.
vulgare cDNA clone bags13e14, mRNA sequence
Length = 595
Score = 309 bits (670), Expect = 6e-084
Identities = 117/179 (65%), Positives = 142/179 (79%)
Frame = +1 / +1
Query: 4 IDDGSNGDVAADHYHRYKDDIEMMHSIGLGSYRFSLSWSRILPKGRFGGVNQAGVKFYNS 183
I+DGSNGD+AADHYHRY +DIE+MHS+G+ SYRFS++W+RILP+GRFG +N GV FYN+
Sbjct: 58 IEDGSNGDIAADHYHRYMEDIELMHSLGVNSYRFSIAWTRILPRGRFGHINPDGVPFYNA 237
Query: 184 LINGLLEKGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAELCFKXFGDRVKHWV 363
+IN LL+KGIQPFVTI HYDIP EL+ERY WL+ EIQ+DF YFA++CFK FGDRVK WV
Sbjct: 238 IINALLQKGIQPFVTIFHYDIPHELEERYGGWLSPEIQKDFGYFAKVCFKLFGDRVKFWV 417
Query: 364 TFNEPNLIXKLAYSXXAFPPNXCSEPYXKXXSGNSSTXXYIXAHNMILAHAKXXNIYRN 540
T N+PNL+ K AY FPP CS+P+ GNSS YI HNMIL+HA +IYRN
Sbjct: 418 TMNQPNLLAKFAYMDGWFPPGHCSKPFGNCAFGNSSIEPYIVGHNMILSHANAVSIYRN 594
Score = 105 bits (225), Expect = 1e-022
Identities = 49/133 (36%), Positives = 77/133 (57%)
Frame = -2 / -2
Query: 402 VCKLXNKIWLIECDPMLYSVTKXLEAKLSEVGEVLLNL*VQPRIVSFLEFFRYVIVVDRH 223
+ K + LI C+P +SV K LEA +V +VLL+ QP +S + V++ R+
Sbjct: 456 ISKFCQ*VRLIHCNPEFHSVAKQLEAYFCKVTKVLLDFWTQPSTISLFKLMWNVVMKYRN 277
Query: 222 KWLYPFF*QSVDEAIVEFNACLINTSEATLWKNSRP*Q*ESVRAEANRMHHFYVVLVSMI 43
KWLY F +S+D+ IVE+ I S++ W NS P ES+ + MH + V+M+
Sbjct: 276 KWLYAFLQKSIDDGIVEWYTVWIYMSKSASW*NSCPCYGESI*VHSQGMHQLNIFHVTMV 97
Query: 42 MVSSHVAIASIVN 4
M+SS++A+ SI+N
Sbjct: 96 MISSNIAVTSILN 58
Score = 63.8 bits (133), Expect(2) = 6e-021
Identities = 47/121 (38%), Positives = 58/121 (47%)
Frame = -1 / -1
Query: 367 M*PNALLGHQXS*SKAQRSR*SPPESLGSTKNCIFLGVLQVCHSG*SSQMVVSLFLAVR* 188
+*P LG Q +*S +S SP L ST + I L C + S QMVV L *
Sbjct: 421 L*PRISLGRQTT*SILLQSNQSPSGFLDSTIHHIALQAHVECRNEIS*QMVVCLSAEEH* 242
Query: 187 *GYCRI*RLPD*HLRSDPLEEFSTMTMRICKSRGQSNASFLCRPCIDDNGQQPRRHCFHR 8
* +CR+ D +++ L EF +M RI S NAS PC D N QQ R FH
Sbjct: 241 *WHCRMVHRLDLYVQIGLLVEFVSMLWRIDMSSLPRNASTQYLPCNDGNDQQQYRRYFHP 62
Query: 7 Q 5
Q
Sbjct: 61 Q 59
Score = 56.1 bits (116), Expect(2) = 6e-021
Identities = 31/67 (46%), Positives = 38/67 (56%)
Frame = -3 / -3
Query: 539 FL*MLXXFA*ANIMLCAXMXXSVDEXPEXXFXYGSEQXLGGNAXXEYASFXIRFGSLNVT 360
FL*ML FA +I+L M S++E P+ F G EQ GGN A+F + G VT
Sbjct: 593 FL*MLTAFACESIIL*PTMYGSIEEFPKAQFPNGFEQ*PGGNHPSI*ANFANKLG*FIVT 414
Query: 359 QCFTRSP 339
Q FTRSP
Sbjct: 413 QNFTRSP 393
>gb|BI952657.1|BI952657 HVSMEm0007E17f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0007E17f, mRNA sequence
Length = 1219
Score = 272 bits (588), Expect(2) = 2e-073
Identities = 102/155 (65%), Positives = 124/155 (80%)
Frame = +1 / +3
Query: 4 IDDGSNGDVAADHYHRYKDDIEMMHSIGLGSYRFSLSWSRILPKGRFGGVNQAGVKFYNS 183
I+DGSNGD+AADHYHRY +DIE+MHS+G+ SYRFS++W+RILP+GRFG +N GV FYN+
Sbjct: 234 IEDGSNGDIAADHYHRYMEDIELMHSLGVNSYRFSIAWTRILPRGRFGHINPDGVAFYNA 413
Query: 184 LINGLLEKGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAELCFKXFGDRVKHWV 363
+IN LL+KGIQPFVTI HYDIP EL+ERY WL+ IQ+DF YFA++CFK FGDRVK WV
Sbjct: 414 IINALLQKGIQPFVTIFHYDIPHELEERYGGWLSPXIQKDFGYFAKVCFKLFGDRVKFWV 593
Query: 364 TFNEPNLIXKLAYSXXAFPPNXCSEPYXKXXSGNS 468
T N+PNL+ K AY FPP CS+P GNS
Sbjct: 594 TMNQPNLLAKFAYMDGWFPPGHCSKPLGNCAFGNS 698
Score = 103 bits (220), Expect = 7e-022
Identities = 48/124 (38%), Positives = 73/124 (58%)
Frame = -2 / -3
Query: 375 LIECDPMLYSVTKXLEAKLSEVGEVLLNL*VQPRIVSFLEFFRYVIVVDRHKWLYPFF*Q 196
LI C+P +SV K LEA +V +VLL+ QP +S + V++ R+KWLY F +
Sbjct: 605 LIHCNPEFHSVAKQLEAYFCKVTKVLLDXWTQPSTISLFKLMWNVVMKYRNKWLYAFLQK 426
Query: 195 SVDEAIVEFNACLINTSEATLWKNSRP*Q*ESVRAEANRMHHFYVVLVSMIMVSSHVAIA 16
S+D+ IVE I S++ W NS P ES+ + MH + V+M+M+SS++A+
Sbjct: 425 SIDDGIVECYTVWIYMSKSASW*NSCPCYGESI*VHSQGMHQLNIFHVAMVMISSNIAVT 246
Query: 15 SIVN 4
SI+N
Sbjct: 245 SILN 234
Score = 23.5 bits (45), Expect(2) = 2e-073
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +1 / +1
Query: 493 HNMILAHAK 519
HNMIL+HAK
Sbjct: 721 HNMILSHAK 747
>gb|BG343192.1|BG343192 HVSMEg0005A20f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0005A20f, mRNA sequence
Length = 1040
Score = 254 bits (549), Expect = 3e-067
Identities = 96/146 (65%), Positives = 117/146 (80%)
Frame = +1 / +1
Query: 4 IDDGSNGDVAADHYHRYKDDIEMMHSIGLGSYRFSLSWSRILPKGRFGGVNQAGVKFYNS 183
I+DGSNGD+AADHYHRY +DIE+MHS+G+ SYRFS++W+RILP+GRFG +N GV FYN+
Sbjct: 268 IEDGSNGDIAADHYHRYMEDIELMHSLGVNSYRFSIAWTRILPRGRFGHINPDGVAFYNA 447
Query: 184 LINGLLEKGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAELCFKXFGDRVKHWV 363
+IN LL+KGIQPFVTI HYDIP EL+ERY WL+ EIQ+D YFA +CFK FGDRVK WV
Sbjct: 448 IINALLQKGIQPFVTIFHYDIPHELEERYGGWLSPEIQKDXGYFAXVCFKVFGDRVKFWV 627
Query: 364 TFNEPNLIXKLAYSXXAFPPNXCSEP 441
T N+PNL+ AY P CS+P
Sbjct: 628 TMNQPNLLAXFAYMDGWVPLCHCSKP 705
>gb|BF626949.2|BF626949 HVSMEb0001M13f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0001M13f, mRNA sequence
Length = 852
Score = 250 bits (541), Expect = 4e-066
Identities = 93/132 (70%), Positives = 114/132 (86%)
Frame = +1 / +2
Query: 4 IDDGSNGDVAADHYHRYKDDIEMMHSIGLGSYRFSLSWSRILPKGRFGGVNQAGVKFYNS 183
I+DGSNGD+AADHYHRY +DIE+MHS+G+ SYRFS++W+RILP+GRFG +N GV FYN+
Sbjct: 257 IEDGSNGDIAADHYHRYMEDIELMHSLGVNSYRFSIAWTRILPRGRFGHINPDGVAFYNA 436
Query: 184 LINGLLEKGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAELCFKXFGDRVKHWV 363
+IN LL+KGIQPFVTI HYDIP EL+ERY WL+ EIQ+DF YFA++CFK FGDRVK WV
Sbjct: 437 IINALLQKGIQPFVTIFHYDIPHELEERYGGWLSPEIQKDFGYFAKVCFKLFGDRVKIWV 616
Query: 364 TFNEPNLIXKLA 399
T N+PNL+ K A
Sbjct: 617 TMNQPNLLAKFA 652
Score = 103 bits (220), Expect = 7e-022
Identities = 48/124 (38%), Positives = 73/124 (58%)
Frame = -2 / -3
Query: 375 LIECDPMLYSVTKXLEAKLSEVGEVLLNL*VQPRIVSFLEFFRYVIVVDRHKWLYPFF*Q 196
LI C+P +SV K LEA +V +VLL+ QP +S + V++ R+KWLY F +
Sbjct: 628 LIHCNPDFHSVAKQLEAYFCKVTKVLLDFWTQPSTISLFKLMWNVVMKYRNKWLYAFLQK 449
Query: 195 SVDEAIVEFNACLINTSEATLWKNSRP*Q*ESVRAEANRMHHFYVVLVSMIMVSSHVAIA 16
S+D+ IVE I S++ W NS P ES+ + MH + V+M+M+SS++A+
Sbjct: 448 SIDDGIVECYTVWIYMSKSASW*NSCPCYGESI*VHSQGMHQLNIFHVAMVMISSNIAVT 269
Query: 15 SIVN 4
SI+N
Sbjct: 268 SILN 257
>gb|AL508506.1|AL508506 AL508506 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY08P10V 5',
mRNA sequence
Length = 700
Score = 190 bits (409), Expect(2) = 1e-054
Identities = 67/110 (60%), Positives = 90/110 (81%)
Frame = +1 / +3
Query: 4 IDDGSNGDVAADHYHRYKDDIEMMHSIGLGSYRFSLSWSRILPKGRFGGVNQAGVKFYNS 183
I+DG NGDVA DHYHRY +D+E+MH++G+ SYRFS+SW+R+LP+GR GGVN A + FYN
Sbjct: 270 INDGRNGDVADDHYHRYMEDVEIMHNLGVNSYRFSISWARVLPRGRLGGVNSAAIAFYNR 449
Query: 184 LINGLLEKGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAELCFK 333
LI LLEKGI+PFVT++H+D+P EL+ R+ WL I E+F Y+A++CFK
Sbjct: 450 LIAALLEKGIEPFVTLHHFDLPHELETRHGGWLGAGIXEEFGYYADVCFK 599
Score = 42.3 bits (86), Expect(2) = 1e-054
Identities = 16/28 (57%), Positives = 16/28 (57%)
Frame = +1 / +1
Query: 337 FGDRVKHWVTFNEPNLIXKLAYSXXAFP 420
FGDRVK W T NEPNL K A P
Sbjct: 604 FGDRVKFWTTLNEPNLFTKFALHAGPVP 687
>gb|BF624761.3|BF624761 HVSMEa0017K20f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0017K20f, mRNA sequence
Length = 817
Score = 199 bits (429), Expect(2) = 9e-053
Identities = 76/141 (53%), Positives = 97/141 (68%)
Frame = +1 / +1
Query: 10 DGSNGDVAADHYHRYKDDIEMMHSIGLGSYRFSLSWSRILPKGRFGGVNQAGVKFYNSLI 189
DGS+G+VA DHYHRYK+DIE+M +G G+YRFS+SWSRI P G +N+ GV FYN+LI
Sbjct: 268 DGSSGEVAVDHYHRYKEDIELMAKLGFGAYRFSISWSRIFPDGLGTEINEQGVAFYNNLI 447
Query: 190 NGLLEKGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAELCFKXFGDRVKHWVTF 369
+ ++EKGIQP+ T+ H+D+P LQ WL+ +I E F +AE CF FGDRVKHW+T
Sbjct: 448 DFMIEKGIQPYATLYHWDLPHNLQRTMGGWLSDKIVEYFALYAEACFANFGDRVKHWITI 627
Query: 370 NEPNLIXKLAYSXXAFPPNXC 432
NEP AY F P C
Sbjct: 628 NEPIQTCINAYGIGIFAPGLC 690
Score = 27.2 bits (53), Expect(2) = 9e-053
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +1 / +1
Query: 469 STXXYIXAHNMILAHAKXXNIYR 537
S ++ H+ ILAHA ++YR
Sbjct: 700 SAEPFLAGHHQILAHAAAVDVYR 768
>gb|BU990132.1|BU990132 HF24C23r HF Hordeum vulgare subsp. vulgare cDNA clone HF24C23
5-PRIME, mRNA sequence
Length = 661
Score = 199 bits (429), Expect(2) = 9e-053
Identities = 76/141 (53%), Positives = 97/141 (68%)
Frame = +1 / +2
Query: 10 DGSNGDVAADHYHRYKDDIEMMHSIGLGSYRFSLSWSRILPKGRFGGVNQAGVKFYNSLI 189
DGS+G+VA DHYHRYK+DIE+M +G G+YRFS+SWSRI P G +N+ GV FYN+LI
Sbjct: 50 DGSSGEVAVDHYHRYKEDIELMAKLGFGAYRFSISWSRIFPDGLGTEINEQGVAFYNNLI 229
Query: 190 NGLLEKGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAELCFKXFGDRVKHWVTF 369
+ ++EKGIQP+ T+ H+D+P LQ WL+ +I E F +AE CF FGDRVKHW+T
Sbjct: 230 DFMIEKGIQPYATLYHWDLPHNLQRTMGGWLSDKIVEYFALYAEACFANFGDRVKHWITI 409
Query: 370 NEPNLIXKLAYSXXAFPPNXC 432
NEP AY F P C
Sbjct: 410 NEPIQTCINAYGIGIFAPGLC 472
Score = 27.2 bits (53), Expect(2) = 9e-053
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +1 / +2
Query: 469 STXXYIXAHNMILAHAKXXNIYR 537
S ++ H+ ILAHA ++YR
Sbjct: 482 SAEPFLAGHHQILAHAAAVDVYR 550
>gb|CK122337.1|CK122337 BES1824102p02 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010P022 5-PRIME, mRNA sequence
Length = 750
Score = 137 bits (294), Expect(3) = 1e-051
Identities = 50/98 (51%), Positives = 67/98 (68%)
Frame = +1 / +1
Query: 145 GGVNQAGVKFYNSLINGLLEKGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAEL 324
G VNQ GV +YN+LIN LL+KGI P++ + HYD+P L+++Y WLN + F +A+
Sbjct: 205 GKVNQEGVAYYNNLINYLLQKGITPYINLYHYDLPLALEKKYGGWLNAKTVGLFADYADF 384
Query: 325 CFKXFGDRVKHWVTFNEPNLIXKLAYSXXAFPPNXCSE 438
CFK FGDRVKHW TFNEP ++ L Y + PP CS+
Sbjct: 385 CFKTFGDRVKHWFTFNEPRIVALLGYDVGSNPPQRCSK 498
Score = 68.9 bits (144), Expect(3) = 1e-051
Identities = 24/46 (52%), Positives = 30/46 (65%)
Frame = +1 / +1
Query: 1 NIDDGSNGDVAADHYHRYKDDIEMMHSIGLGSYRFSLSWSRILPKG 138
NI N DV D YHRYK+D+ +M + +YRFS+SWSRI P G
Sbjct: 64 NIAGNQNADVTTDQYHRYKEDVNLMKGLNFDAYRFSISWSRIFPDG 201
Score = 35.0 bits (70), Expect(3) = 1e-051
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +1 / +1
Query: 460 GNSSTXXYIXAHNMILAHAKXXNIYRN 540
GNS+T YI AHN +LAH YR+
Sbjct: 511 GNSATEPYIVAHNFLLAHGYAVARYRD 591
>gb|AV916387.1|AV916387 AV916387 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17a02 5', mRNA sequence
Length = 630
Score = 137 bits (294), Expect(3) = 1e-050
Identities = 50/98 (51%), Positives = 67/98 (68%)
Frame = +1 / +1
Query: 145 GGVNQAGVKFYNSLINGLLEKGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAEL 324
G VNQ GV +YN+LIN LL+KGI P++ + HYD+P L+++Y WLN + F +A+
Sbjct: 139 GKVNQEGVAYYNNLINYLLQKGITPYINLYHYDLPLALEKKYGGWLNAKTVGLFADYADF 318
Query: 325 CFKXFGDRVKHWVTFNEPNLIXKLAYSXXAFPPNXCSE 438
CFK FGDRVKHW TFNEP ++ L Y + PP CS+
Sbjct: 319 CFKTFGDRVKHWFTFNEPRIVALLGYDVGSNPPQRCSK 432
Score = 66.1 bits (138), Expect(3) = 1e-050
Identities = 23/45 (51%), Positives = 29/45 (64%)
Frame = +1 / +1
Query: 4 IDDGSNGDVAADHYHRYKDDIEMMHSIGLGSYRFSLSWSRILPKG 138
I N DV D YHRYK+D+ +M + +YRFS+SWSRI P G
Sbjct: 1 IAGNQNADVTTDQYHRYKEDVNLMKGLNFDAYRFSISWSRIFPDG 135
Score = 34.5 bits (69), Expect(3) = 1e-050
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +1 / +1
Query: 460 GNSSTXXYIXAHNMILAHAKXXNIYR 537
GNS+T YI AHN +LAH YR
Sbjct: 445 GNSATEPYIVAHNFLLAHGYAVARYR 522
>gb|AV913514.1|AV913514 AV913514 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags22f16 5', mRNA sequence
Length = 647
Score = 137 bits (293), Expect(3) = 1e-050
Identities = 52/110 (47%), Positives = 73/110 (66%)
Frame = +1 / +2
Query: 145 GGVNQAGVKFYNSLINGLLEKGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAEL 324
G VN G+++YN+LIN LL GIQP VT+ H+D+P+ LQ+ YN L+ + +D+T +A++
Sbjct: 134 GAVNAKGLEYYNNLINELLRHGIQPHVTVYHFDLPQALQDEYNGMLSRKFIDDYTVYADV 313
Query: 325 CFKXFGDRVKHWVTFNEPNLIXKLAYSXXAFPPNXCSEPYXKXXSGNSST 474
CFK FGDRVK+W T NEPN+ Y FPP CS P+ + +ST
Sbjct: 314 CFKNFGDRVKYWSTLNEPNIEPIGGYDQGFFPPQRCSLPFGISCNNGNST 463
Score = 63.8 bits (133), Expect(3) = 1e-050
Identities = 19/39 (48%), Positives = 32/39 (82%)
Frame = +1 / +2
Query: 25 DVAADHYHRYKDDIEMMHSIGLGSYRFSLSWSRILPKGR 141
DV AD YH+YK+D++++ +G+ +YRFS++W R++P GR
Sbjct: 17 DVTADQYHKYKEDVKLLSEMGVDAYRFSIAWPRLIPDGR 133
Score = 36.8 bits (74), Expect(3) = 1e-050
Identities = 12/27 (44%), Positives = 20/27 (74%)
Frame = +1 / +2
Query: 457 SGNSSTXXYIXAHNMILAHAKXXNIYR 537
+GNS+T YI H+++LAHA ++Y+
Sbjct: 449 NGNSTTEPYIVTHHLLLAHASAVSLYK 529
>gb|AV916990.1|AV916990 AV916990 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20f24 5', mRNA sequence
Length = 497
Score = 137 bits (294), Expect(3) = 5e-050
Identities = 50/98 (51%), Positives = 67/98 (68%)
Frame = +1 / +2
Query: 145 GGVNQAGVKFYNSLINGLLEKGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAEL 324
G VNQ GV +YN+LIN LL+KGI P++ + HYD+P L+++Y WLN + F +A+
Sbjct: 137 GKVNQEGVAYYNNLINYLLQKGITPYINLYHYDLPLALEKKYGGWLNAKTVGLFADYADF 316
Query: 325 CFKXFGDRVKHWVTFNEPNLIXKLAYSXXAFPPNXCSE 438
CFK FGDRVKHW TFNEP ++ L Y + PP CS+
Sbjct: 317 CFKTFGDRVKHWFTFNEPRIVALLGYDVGSNPPQRCSK 430
Score = 65.7 bits (137), Expect(3) = 5e-050
Identities = 22/40 (55%), Positives = 28/40 (70%)
Frame = +1 / +2
Query: 19 NGDVAADHYHRYKDDIEMMHSIGLGSYRFSLSWSRILPKG 138
N DV D YHRYK+D+ +M + +YRFS+SWSRI P G
Sbjct: 14 NADVTTDQYHRYKEDVNLMKGLNFDAYRFSISWSRIFPDG 133
Score = 32.7 bits (65), Expect(3) = 5e-050
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +1 / +2
Query: 460 GNSSTXXYIXAHNMILAH 513
GNS+T YI AHN +LAH
Sbjct: 443 GNSATEPYIVAHNFLLAH 496
>gb|BU978697.1|BU978697 HA14A09r HA Hordeum vulgare subsp. vulgare cDNA clone HA14A09
5-PRIME, mRNA sequence
Length = 637
Score = 127 bits (271), Expect(3) = 9e-050
Identities = 44/98 (44%), Positives = 70/98 (71%)
Frame = +1 / +3
Query: 145 GGVNQAGVKFYNSLINGLLEKGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAEL 324
G VN+ GV +YN+LI+ ++++G+ P+V +NHYDIP LQ++Y+ +L+ +I F +AE
Sbjct: 156 GKVNKEGVTYYNNLIDYVIKQGLTPYVNLNHYDIPLALQKKYDGFLSPKIVNIFADYAEF 335
Query: 325 CFKXFGDRVKHWVTFNEPNLIXKLAYSXXAFPPNXCSE 438
CFK +GDR+K+W TFNEP ++ L + PPN C++
Sbjct: 336 CFKTYGDRIKNWFTFNEPRIVAALGFDTGTNPPNRCTK 449
Score = 73.9 bits (155), Expect(3) = 9e-050
Identities = 25/46 (54%), Positives = 35/46 (76%)
Frame = +1 / +3
Query: 1 NIDDGSNGDVAADHYHRYKDDIEMMHSIGLGSYRFSLSWSRILPKG 138
NI + +N DVA D YHRYK+D++++ S+ +YRFS+SWSRI P G
Sbjct: 15 NIAENANADVATDEYHRYKEDVDLLKSLNFDAYRFSISWSRIFPDG 152
Score = 34.1 bits (68), Expect(3) = 9e-050
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1 / +3
Query: 460 GNSSTXXYIXAHNMILAHAKXXNIYRN 540
GNS+T Y HN++L HA YRN
Sbjct: 462 GNSATEPYTVVHNILLCHATAVARYRN 542
>gb|BJ462621.1|BJ462621 BJ462621 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags29i09 5', mRNA sequence
Length = 608
Score = 137 bits (294), Expect(3) = 9e-050
Identities = 50/98 (51%), Positives = 67/98 (68%)
Frame = +1 / +2
Query: 145 GGVNQAGVKFYNSLINGLLEKGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAEL 324
G VNQ GV +YN+LIN LL+KGI P++ + HYD+P L+++Y WLN + F +A+
Sbjct: 122 GKVNQEGVAYYNNLINYLLQKGITPYINLYHYDLPLALEKKYGGWLNAKTVGLFADYADF 301
Query: 325 CFKXFGDRVKHWVTFNEPNLIXKLAYSXXAFPPNXCSE 438
CFK FGDRVKHW TFNEP ++ L Y + PP CS+
Sbjct: 302 CFKTFGDRVKHWFTFNEPRIVALLGYDVGSNPPQRCSK 415
Score = 62.9 bits (131), Expect(3) = 9e-050
Identities = 21/38 (55%), Positives = 27/38 (71%)
Frame = +1 / +2
Query: 25 DVAADHYHRYKDDIEMMHSIGLGSYRFSLSWSRILPKG 138
DV D YHRYK+D+ +M + +YRFS+SWSRI P G
Sbjct: 5 DVTTDQYHRYKEDVNLMKGLNFDAYRFSISWSRIFPDG 118
Score = 34.5 bits (69), Expect(3) = 9e-050
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +1 / +2
Query: 460 GNSSTXXYIXAHNMILAHAKXXNIYR 537
GNS+T YI AHN +LAH YR
Sbjct: 428 GNSATEPYIVAHNFLLAHGYAVARYR 505
>gb|BF621404.2|BF621404 HVSMEa0006M24f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0006M24f, mRNA sequence
Length = 821
Score = 132 bits (282), Expect(3) = 1e-049
Identities = 49/97 (50%), Positives = 67/97 (69%)
Frame = +1 / +3
Query: 145 GGVNQAGVKFYNSLINGLLEKGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAEL 324
GG+N+AGV FYNSLI+ +L +G+ PFVT+ H+D P+ L+++Y S+L+ I +D+ +AEL
Sbjct: 399 GGINKAGVDFYNSLIDEVLARGLMPFVTMFHFDTPQALEDKYGSFLSDNIVKDYVEYAEL 578
Query: 325 CFKXFGDRVKHWVTFNEPNLIXKLAYSXXAFPPNXCS 435
CFK FGDRVK W TFNEP + Y P CS
Sbjct: 579 CFKLFGDRVKFWTTFNEPMVFCAFGYGTGTLAPGRCS 689
Score = 71.6 bits (150), Expect(3) = 1e-049
Identities = 26/49 (53%), Positives = 36/49 (73%)
Frame = +1 / +3
Query: 4 IDDGSNGDVAADHYHRYKDDIEMMHSIGLGSYRFSLSWSRILPKGRFGG 150
I DGSN D A D YHRYK+D++++ + + ++RFSL+WSRILP G G
Sbjct: 255 IADGSNVDTANDFYHRYKEDLKLVTDMNMDAFRFSLAWSRILPNGTIAG 401
Score = 30.9 bits (61), Expect(3) = 1e-049
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +1 / +1
Query: 460 GNSSTXXYIXAHNMILAHAKXXNIYR 537
G+SST Y HN+++ HA+ ++ R
Sbjct: 718 GDSSTEPYXXGHNLLIXHAEAVHLVR 795
>gb|BU997151.1|BU997151 HI07B06r HI Hordeum vulgare subsp. vulgare cDNA clone HI07B06
5-PRIME, mRNA sequence
Length = 614
Score = 127 bits (271), Expect(3) = 6e-049
Identities = 44/98 (44%), Positives = 70/98 (71%)
Frame = +1 / +3
Query: 145 GGVNQAGVKFYNSLINGLLEKGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAEL 324
G VN+ GV +YN+LI+ ++++G+ P+V +NHYDIP LQ++Y+ +L+ +I F +AE
Sbjct: 228 GKVNKEGVTYYNNLIDYVIKQGLTPYVNLNHYDIPLALQKKYDGFLSPKIVNIFADYAEF 407
Query: 325 CFKXFGDRVKHWVTFNEPNLIXKLAYSXXAFPPNXCSE 438
CFK +GDR+K+W TFNEP ++ L + PPN C++
Sbjct: 408 CFKTYGDRIKNWFTFNEPRIVAALGFDTGTNPPNRCTK 521
Score = 71.2 bits (149), Expect(3) = 6e-049
Identities = 24/45 (53%), Positives = 34/45 (75%)
Frame = +1 / +3
Query: 4 IDDGSNGDVAADHYHRYKDDIEMMHSIGLGSYRFSLSWSRILPKG 138
I + +N DVA D YHRYK+D++++ S+ +YRFS+SWSRI P G
Sbjct: 90 IAENANADVATDEYHRYKEDVDLLKSLNFDAYRFSISWSRIFPDG 224
Score = 34.1 bits (68), Expect(3) = 6e-049
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1 / +3
Query: 460 GNSSTXXYIXAHNMILAHAKXXNIYRN 540
GNS+T Y HN++L HA YRN
Sbjct: 534 GNSATEPYTVVHNILLCHATAVARYRN 614
>gb|AL508422.1|AL508422 AL508422 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY08L11V 5',
mRNA sequence
Length = 700
Score = 193 bits (415), Expect = 8e-049
Identities = 71/123 (57%), Positives = 92/123 (74%)
Frame = +1 / +1
Query: 10 DGSNGDVAADHYHRYKDDIEMMHSIGLGSYRFSLSWSRILPKGRFGGVNQAGVKFYNSLI 189
DGS+G+VA DHYHRYK+DIE+M +G G+YRFS+SWSRI P G +N+ GV FYN+LI
Sbjct: 283 DGSSGEVAVDHYHRYKEDIELMAKLGFGAYRFSISWSRIFPDGLGTEINEQGVAFYNNLI 462
Query: 190 NGLLEKGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAELCFKXFGDRVKHWVTF 369
+ ++EKGIQP+ T+ H+D+P LQ WL+ +I E F +AE CF FGDRVKHW+T
Sbjct: 463 DFMIEKGIQPYATLYHWDLPHNLQRTMGGWLSDKIVEYFALYAEACFANFGDRVKHWITI 642
Query: 370 NEP 378
NEP
Sbjct: 643 NEP 651
>gb|AV915416.1|AV915416 AV915416 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags14f05 5', mRNA sequence
Length = 417
Score = 191 bits (412), Expect = 2e-048
Identities = 72/133 (54%), Positives = 92/133 (69%)
Frame = +1 / +3
Query: 118 SRILPKGRFGGVNQAGVKFYNSLINGLLEKGIQPFVTINHYDIPEELQERYNSWLNLEIQ 297
SR+LP+GR GVN A + FYN LI LLEKGI+PFVT++H+D+P EL+ R+ WL I+
Sbjct: 18 SRVLPRGRLXGVNSAAIAFYNRLIAALLEKGIEPFVTLHHFDLPHELETRHGGWLGAGIR 197
Query: 298 EDFTYFAELCFKXFGDRVKHWVTFNEPNLIXKLAYSXXAFPPNXCSEPYXKXXSGNSSTX 477
E+F Y+A++CFK FGDRVK W T NEPNL K AY +P CS P+ SG+S
Sbjct: 198 EEFGYYADVCFKAFGDRVKFWTTLNEPNLFTKFAYMLGQYPXKHCSPPFGTCNSGDSXRE 377
Query: 478 XYIXAHNMILAHA 516
Y+ HNMI+ HA
Sbjct: 378 PYVXXHNMIMXHA 416
>gb|CA014891.1|CA014891 HT12K07r HT Hordeum vulgare subsp. vulgare cDNA clone HT12K07
5-PRIME, mRNA sequence
Length = 647
Score = 116 bits (247), Expect(3) = 1e-047
Identities = 43/100 (43%), Positives = 64/100 (64%)
Frame = +1 / +2
Query: 145 GGVNQAGVKFYNSLINGLLEKGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAEL 324
G VN G+++YN+LI+ L++ GIQ + I + P+ L++ Y WL+ I EDFT FA++
Sbjct: 248 GAVNPKGLEYYNNLIDALVQHGIQVHIMIYQLEYPQILEDEYGGWLSPIIVEDFTAFADV 427
Query: 325 CFKXFGDRVKHWVTFNEPNLIXKLAYSXXAFPPNXCSEPY 444
CF+ FGDRV +W T +EPN+ +Y P CSEP+
Sbjct: 428 CFREFGDRVSYWTTIDEPNVGAMGSYDIGVIAPGHCSEPF 547
Score = 72.1 bits (151), Expect(3) = 1e-047
Identities = 27/44 (61%), Positives = 35/44 (79%)
Frame = +1 / +2
Query: 10 DGSNGDVAADHYHRYKDDIEMMHSIGLGSYRFSLSWSRILPKGR 141
D S GDVAAD YH+YKDD+++M L +YRFS+SWSR++P GR
Sbjct: 116 DKSVGDVAADGYHKYKDDVKLMVDTHLEAYRFSISWSRLIPDGR 247
Score = 39.6 bits (80), Expect(3) = 1e-047
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +1 / +2
Query: 448 KXXSGNSSTXXYIXAHNMILAHAKXXNIYR 537
K G+S+ YI AHNM+LAHA +YR
Sbjct: 557 KCTVGDSTVEPYIAAHNMLLAHASAARLYR 646
>gb|AV913799.1|AV913799 AV913799 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23f10 5', mRNA sequence
Length = 636
Score = 137 bits (294), Expect(2) = 9e-047
Identities = 50/98 (51%), Positives = 67/98 (68%)
Frame = +1 / +3
Query: 145 GGVNQAGVKFYNSLINGLLEKGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAEL 324
G VNQ GV +YN+LIN LL+KGI P++ + HYD+P L+++Y WLN + F +A+
Sbjct: 300 GKVNQEGVAYYNNLINYLLQKGITPYINLYHYDLPLALEKKYGGWLNAKTVGLFADYADF 479
Query: 325 CFKXFGDRVKHWVTFNEPNLIXKLAYSXXAFPPNXCSE 438
CFK FGDRVKHW TFNEP ++ L Y + PP CS+
Sbjct: 480 CFKTFGDRVKHWFTFNEPRIVALLGYDVGSNPPQRCSK 593
Score = 68.9 bits (144), Expect(2) = 9e-047
Identities = 24/46 (52%), Positives = 30/46 (65%)
Frame = +1 / +3
Query: 1 NIDDGSNGDVAADHYHRYKDDIEMMHSIGLGSYRFSLSWSRILPKG 138
NI N DV D YHRYK+D+ +M + +YRFS+SWSRI P G
Sbjct: 159 NIAGNQNADVTTDQYHRYKEDVNLMKGLNFDAYRFSISWSRIFPDG 296
>gb|BI778494.2|BI778494 EBro07_SQ003_H09_R root, 3 week, reduced light, cv Optic, EBro07
Hordeum vulgare subsp. vulgare cDNA clone
EBro07_SQ003_H09 5', mRNA sequence
Length = 618
Score = 125 bits (268), Expect(2) = 9e-047
Identities = 48/98 (48%), Positives = 66/98 (67%)
Frame = +1 / +1
Query: 151 VNQAGVKFYNSLINGLLEKGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAELCF 330
+N G+++YN+LI+ L+ GIQP VTI H+D+P+ LQ+ Y L+ ED+T +A +CF
Sbjct: 325 INPKGLEYYNNLIDELILYGIQPHVTIYHFDLPQVLQDEYGGLLSPRFIEDYTAYANVCF 504
Query: 331 KXFGDRVKHWVTFNEPNLIXKLAYSXXAFPPNXCSEPY 444
K FGDRVKHWVT NEPN+ Y + PP CS P+
Sbjct: 505 KSFGDRVKHWVTVNEPNIEPIGGYDNGSQPPRRCSYPF 618
Score = 80.8 bits (170), Expect(2) = 9e-047
Identities = 27/44 (61%), Positives = 37/44 (84%)
Frame = +1 / +1
Query: 10 DGSNGDVAADHYHRYKDDIEMMHSIGLGSYRFSLSWSRILPKGR 141
DGS GDV+AD YH YK+D+++MH +GL +YRFS+SW R++P GR
Sbjct: 187 DGSTGDVSADQYHLYKEDVKLMHKMGLDAYRFSISWPRLIPDGR 318
>gb|BQ763070.1|BQ763070 EBro02_SQ007_H01_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ007_H01 5', mRNA sequence
Length = 719
Score = 131 bits (280), Expect(2) = 2e-046
Identities = 51/110 (46%), Positives = 70/110 (63%)
Frame = +1 / +1
Query: 145 GGVNQAGVKFYNSLINGLLEKGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAEL 324
G VN G+++YN+LI+ LL GIQP VTI H+D P+ LQ+ YN L+ + +D+T +AE+
Sbjct: 376 GAVNPKGLEYYNNLIDELLAHGIQPHVTIYHFDFPQALQDEYNGMLSRKFVDDYTAYAEV 555
Query: 325 CFKXFGDRVKHWVTFNEPNLIXKLAYSXXAFPPNXCSEPYXKXXSGNSST 474
CFK FGDRVK+W T NEPN+ Y PP CS P+ N ++
Sbjct: 556 CFKNFGDRVKYWSTVNEPNIEPIGGYDQGILPPRRCSFPFGVLSCDNGNS 705
Score = 73.9 bits (155), Expect(2) = 2e-046
Identities = 23/44 (52%), Positives = 36/44 (81%)
Frame = +1 / +1
Query: 10 DGSNGDVAADHYHRYKDDIEMMHSIGLGSYRFSLSWSRILPKGR 141
DGSN DV AD YH+YK+D++++ +G+ +YRFS++W R++P GR
Sbjct: 244 DGSNADVTADQYHKYKEDVKLLSDMGVDAYRFSIAWPRLIPDGR 375
>gb|BQ466003.1|BQ466003 HT01E20T HT Hordeum vulgare subsp. vulgare cDNA clone HT01E20
5-PRIME, mRNA sequence
Length = 626
Score = 131 bits (280), Expect(2) = 2e-046
Identities = 51/110 (46%), Positives = 70/110 (63%)
Frame = +1 / +2
Query: 145 GGVNQAGVKFYNSLINGLLEKGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAEL 324
G VN G+++YN+LI+ LL GIQP VTI H+D P+ LQ+ YN L+ + +D+T +AE+
Sbjct: 272 GAVNPKGLEYYNNLIDELLAHGIQPHVTIYHFDFPQALQDEYNGMLSRKFVDDYTAYAEV 451
Query: 325 CFKXFGDRVKHWVTFNEPNLIXKLAYSXXAFPPNXCSEPYXKXXSGNSST 474
CFK FGDRVK+W T NEPN+ Y PP CS P+ N ++
Sbjct: 452 CFKNFGDRVKYWSTVNEPNIEPIGGYDQGILPPRRCSFPFGVLSCDNGNS 601
Score = 73.9 bits (155), Expect(2) = 2e-046
Identities = 23/44 (52%), Positives = 36/44 (81%)
Frame = +1 / +2
Query: 10 DGSNGDVAADHYHRYKDDIEMMHSIGLGSYRFSLSWSRILPKGR 141
DGSN DV AD YH+YK+D++++ +G+ +YRFS++W R++P GR
Sbjct: 140 DGSNADVTADQYHKYKEDVKLLSDMGVDAYRFSIAWPRLIPDGR 271
>gb|BQ763048.1|BQ763048 EBro02_SQ007_C02_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ007_C02 5', mRNA sequence
Length = 721
Score = 137 bits (294), Expect(2) = 5e-046
Identities = 50/84 (59%), Positives = 67/84 (79%)
Frame = +1 / +1
Query: 10 DGSNGDVAADHYHRYKDDIEMMHSIGLGSYRFSLSWSRILPKGRFGGVNQAGVKFYNSLI 189
DGS+G+VA DHYHRYK+DIE+M +G G+YRFS+SWSRI P G +N+ GV FYN+LI
Sbjct: 262 DGSSGEVAVDHYHRYKEDIELMAKLGFGAYRFSISWSRIFPDGLGTEINEQGVAFYNNLI 441
Query: 190 NGLLEKGIQPFVTINHYDIPEELQ 261
+ ++EKGIQP+ T+ H+D+P LQ
Sbjct: 442 DFMIEKGIQPYATLYHWDLPHNLQ 513
Score = 66.6 bits (139), Expect(2) = 5e-046
Identities = 26/55 (47%), Positives = 31/55 (56%)
Frame = +1 / +2
Query: 268 YNSWLNLEIQEDFTYFAELCFKXFGDRVKHWVTFNEPNLIXKLAYSXXAFPPNXC 432
+ WL+ +I E F +AE CF FGDRVKHW+T NEP AY F P C
Sbjct: 521 WGGWLSDKIVEYFALYAEACFANFGDRVKHWITINEPIQTCINAYGIGIFAPGLC 685
>gb|AL503319.1|AL503319 AL503319 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW01J22T 5', mRNA sequence
Length = 700
Score = 128 bits (275), Expect(2) = 2e-044
Identities = 49/99 (49%), Positives = 66/99 (66%)
Frame = +1 / +2
Query: 145 GGVNQAGVKFYNSLINGLLEKGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAEL 324
G VN G+++YN+LIN LL GIQP VTI H+D P+ LQ+ Y+ L+ + +D+T +A++
Sbjct: 404 GAVNPKGLQYYNNLINELLSHGIQPHVTIYHFDFPQALQDEYHGMLSRKFIDDYTAYADV 583
Query: 325 CFKXFGDRVKHWVTFNEPNLIXKLAYSXXAFPPNXCSEP 441
CFK FGDRVK+W T NEPN+ Y PP CS P
Sbjct: 584 CFKNFGDRVKYWSTLNEPNIEPIGGYXVGFLPPRRCSSP 700
Score = 69.8 bits (146), Expect(2) = 2e-044
Identities = 21/44 (47%), Positives = 35/44 (79%)
Frame = +1 / +2
Query: 10 DGSNGDVAADHYHRYKDDIEMMHSIGLGSYRFSLSWSRILPKGR 141
DG+ DV AD YH+YK+D++++ +G+ +YRFS++W R++P GR
Sbjct: 272 DGATADVTADQYHKYKEDVKLLSEMGVDAYRFSIAWPRLIPDGR 403
>gb|BU997000.1|BU997000 HI06J05r HI Hordeum vulgare subsp. vulgare cDNA clone HI06J05
5-PRIME, mRNA sequence
Length = 655
Score = 129 bits (277), Expect(2) = 7e-044
Identities = 48/96 (50%), Positives = 66/96 (68%)
Frame = +1 / +3
Query: 145 GGVNQAGVKFYNSLINGLLEKGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAEL 324
G VN G+++YN+LIN LL GIQP VT+ H+D+P+ LQ+ YN L+ + +D+T +A++
Sbjct: 366 GAVNAKGLEYYNNLINELLRHGIQPHVTVYHFDLPQALQDEYNGMLSRKFIDDYTVYADV 545
Query: 325 CFKXFGDRVKHWVTFNEPNLIXKLAYSXXAFPPNXC 432
CFK FGDRVK+W T NEPN+ Y FPP C
Sbjct: 546 CFKNFGDRVKYWSTLNEPNIEPIGGYDQGFFPPQRC 653
Score = 67.0 bits (140), Expect(2) = 7e-044
Identities = 20/43 (46%), Positives = 34/43 (79%)
Frame = +1 / +3
Query: 13 GSNGDVAADHYHRYKDDIEMMHSIGLGSYRFSLSWSRILPKGR 141
G+ DV AD YH+YK+D++++ +G+ +YRFS++W R++P GR
Sbjct: 237 GATADVTADQYHKYKEDVKLLSEMGVDAYRFSIAWPRLIPDGR 365
>gb|BJ451325.1|BJ451325 BJ451325 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak33i24 5', mRNA sequence
Length = 636
Score = 132 bits (282), Expect(3) = 4e-043
Identities = 51/110 (46%), Positives = 70/110 (63%)
Frame = +1 / +3
Query: 145 GGVNQAGVKFYNSLINGLLEKGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAEL 324
G VN G+++YN+LIN LL GIQP VTI H+D P+ LQ+ Y+ L+ + +D+T +A++
Sbjct: 87 GAVNPKGLQYYNNLINELLSHGIQPHVTIYHFDFPQALQDEYHGMLSRKFIDDYTAYADV 266
Query: 325 CFKXFGDRVKHWVTFNEPNLIXKLAYSXXAFPPNXCSEPYXKXXSGNSST 474
CFK FGDRVK+W T NEPN+ Y PP CS P+ +ST
Sbjct: 267 CFKNFGDRVKYWSTLNEPNIEPIGGYDVGFLPPRRCSSPFGISCDNGNST 416
Score = 41.4 bits (84), Expect(3) = 4e-043
Identities = 11/28 (39%), Positives = 23/28 (82%)
Frame = +1 / +3
Query: 58 DDIEMMHSIGLGSYRFSLSWSRILPKGR 141
+D++++ +G+ +YRFS++W R++P GR
Sbjct: 3 EDVKLLSEMGVDAYRFSIAWPRLIPDGR 86
Score = 39.1 bits (79), Expect(3) = 4e-043
Identities = 13/27 (48%), Positives = 21/27 (77%)
Frame = +1 / +3
Query: 457 SGNSSTXXYIXAHNMILAHAKXXNIYR 537
+GNS+T YI AH+++LAHA ++Y+
Sbjct: 402 NGNSTTEPYIVAHHLLLAHASAASLYK 482
>gb|AV933093.1|AV933093 AV933093 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal5f06 5', mRNA sequence
Length = 634
Score = 119 bits (255), Expect(2) = 9e-043
Identities = 46/100 (46%), Positives = 63/100 (63%)
Frame = +1 / +1
Query: 145 GGVNQAGVKFYNSLINGLLEKGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAEL 324
G VN G+ +YN+LI+ L++ GIQ V + H D P+ L + Y WL+ I EDFT FAE+
Sbjct: 331 GAVNPKGLDYYNNLIDELMKHGIQIHVMLYHLDFPQVLDDEYGGWLSSRIVEDFTAFAEV 510
Query: 325 CFKXFGDRVKHWVTFNEPNLIXKLAYSXXAFPPNXCSEPY 444
CF+ FGDRV +W T +EPN+ +Y F P CS P+
Sbjct: 511 CFREFGDRVSYWTTIDEPNVGPIGSYDSGIFAPGRCSYPF 630
Score = 73.5 bits (154), Expect(2) = 9e-043
Identities = 25/44 (56%), Positives = 35/44 (79%)
Frame = +1 / +1
Query: 10 DGSNGDVAADHYHRYKDDIEMMHSIGLGSYRFSLSWSRILPKGR 141
D S GD+A+D YH+YKDD+++M L +YRFS+SWSR++P GR
Sbjct: 199 DKSTGDIASDGYHKYKDDVKLMADTNLEAYRFSISWSRLIPNGR 330
>gb|CA023296.1|CA023296 HZ45M20r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ45M20
5-PRIME, mRNA sequence
Length = 366
Score = 131 bits (281), Expect(2) = 1e-042
Identities = 46/79 (58%), Positives = 63/79 (79%)
Frame = +1 / +3
Query: 145 GGVNQAGVKFYNSLINGLLEKGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAEL 324
G N+ G+ +YNSLI+ LLEKGIQP+VT+ H+D+P+ L+++Y WLN +I EDF ++A
Sbjct: 117 GKPNEEGLSYYNSLIDVLLEKGIQPYVTLFHWDLPQALEDKYGGWLNSQIVEDFVHYAST 296
Query: 325 CFKXFGDRVKHWVTFNEPN 381
CFK FGDRVKHW+T NEP+
Sbjct: 297 CFKEFGDRVKHWITINEPH 353
Score = 60.6 bits (126), Expect(2) = 1e-042
Identities = 19/33 (57%), Positives = 28/33 (84%)
Frame = +1 / +3
Query: 40 HYHRYKDDIEMMHSIGLGSYRFSLSWSRILPKG 138
+YHRYK+D+++M IG+ +YRFS+SW+RI P G
Sbjct: 15 YYHRYKEDVDLMKDIGVDAYRFSISWARIFPNG 113
>gb|CA012703.1|CA012703 HT06D02r HT Hordeum vulgare subsp. vulgare cDNA clone HT06D02
5-PRIME, mRNA sequence
Length = 649
Score = 118 bits (253), Expect(2) = 1e-042
Identities = 44/80 (55%), Positives = 60/80 (75%)
Frame = +1 / +1
Query: 145 GGVNQAGVKFYNSLINGLLEKGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAEL 324
G VN G+++YN+LI+ LL GIQP VTI H+D P+ LQ+ YN L+ + +D+T +AE+
Sbjct: 388 GAVNPKGLEYYNNLIDELLAHGIQPHVTIYHFDFPQALQDEYNGMLSRKFVDDYTAYAEV 567
Query: 325 CFKXFGDRVKHWVTFNEPNL 384
CFK FGDRVK+W T NEPN+
Sbjct: 568 CFKNFGDRVKYWSTVNEPNI 627
Score = 73.9 bits (155), Expect(2) = 1e-042
Identities = 23/44 (52%), Positives = 36/44 (81%)
Frame = +1 / +1
Query: 10 DGSNGDVAADHYHRYKDDIEMMHSIGLGSYRFSLSWSRILPKGR 141
DGSN DV AD YH+YK+D++++ +G+ +YRFS++W R++P GR
Sbjct: 256 DGSNADVTADQYHKYKEDVKLLSDMGVDAYRFSIAWPRLIPDGR 387
>gb|CA013288.1|CA013288 HT07P04r HT Hordeum vulgare subsp. vulgare cDNA clone HT07P04
5-PRIME, mRNA sequence
Length = 639
Score = 118 bits (253), Expect(2) = 1e-042
Identities = 44/80 (55%), Positives = 60/80 (75%)
Frame = +1 / +3
Query: 145 GGVNQAGVKFYNSLINGLLEKGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAEL 324
G VN G+++YN+LI+ LL GIQP VTI H+D P+ LQ+ YN L+ + +D+T +AE+
Sbjct: 378 GAVNPKGLEYYNNLIDELLAHGIQPHVTIYHFDFPQALQDEYNGMLSRKFVDDYTAYAEV 557
Query: 325 CFKXFGDRVKHWVTFNEPNL 384
CFK FGDRVK+W T NEPN+
Sbjct: 558 CFKNFGDRVKYWSTVNEPNI 617
Score = 73.9 bits (155), Expect(2) = 1e-042
Identities = 23/44 (52%), Positives = 36/44 (81%)
Frame = +1 / +3
Query: 10 DGSNGDVAADHYHRYKDDIEMMHSIGLGSYRFSLSWSRILPKGR 141
DGSN DV AD YH+YK+D++++ +G+ +YRFS++W R++P GR
Sbjct: 246 DGSNADVTADQYHKYKEDVKLLSDMGVDAYRFSIAWPRLIPDGR 377
>gb|CA014847.1|CA014847 HT12I07r HT Hordeum vulgare subsp. vulgare cDNA clone HT12I07
5-PRIME, mRNA sequence
Length = 632
Score = 118 bits (253), Expect(2) = 1e-042
Identities = 44/80 (55%), Positives = 60/80 (75%)
Frame = +1 / +3
Query: 145 GGVNQAGVKFYNSLINGLLEKGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAEL 324
G VN G+++YN+LI+ LL GIQP VTI H+D P+ LQ+ YN L+ + +D+T +AE+
Sbjct: 387 GAVNPKGLEYYNNLIDELLAHGIQPHVTIYHFDFPQALQDEYNGMLSRKFVDDYTAYAEV 566
Query: 325 CFKXFGDRVKHWVTFNEPNL 384
CFK FGDRVK+W T NEPN+
Sbjct: 567 CFKNFGDRVKYWSTVNEPNI 626
Score = 73.9 bits (155), Expect(2) = 1e-042
Identities = 23/44 (52%), Positives = 36/44 (81%)
Frame = +1 / +3
Query: 10 DGSNGDVAADHYHRYKDDIEMMHSIGLGSYRFSLSWSRILPKGR 141
DGSN DV AD YH+YK+D++++ +G+ +YRFS++W R++P GR
Sbjct: 255 DGSNADVTADQYHKYKEDVKLLSDMGVDAYRFSIAWPRLIPDGR 386
>gb|CA015390.1|CA015390 HT14C16r HT Hordeum vulgare subsp. vulgare cDNA clone HT14C16
5-PRIME, mRNA sequence
Length = 633
Score = 118 bits (253), Expect(2) = 1e-042
Identities = 44/80 (55%), Positives = 60/80 (75%)
Frame = +1 / +1
Query: 145 GGVNQAGVKFYNSLINGLLEKGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAEL 324
G VN G+++YN+LI+ LL GIQP VTI H+D P+ LQ+ YN L+ + +D+T +AE+
Sbjct: 388 GAVNPKGLEYYNNLIDELLAHGIQPHVTIYHFDFPQALQDEYNGMLSRKFVDDYTAYAEV 567
Query: 325 CFKXFGDRVKHWVTFNEPNL 384
CFK FGDRVK+W T NEPN+
Sbjct: 568 CFKNFGDRVKYWSTVNEPNI 627
Score = 73.9 bits (155), Expect(2) = 1e-042
Identities = 23/44 (52%), Positives = 36/44 (81%)
Frame = +1 / +1
Query: 10 DGSNGDVAADHYHRYKDDIEMMHSIGLGSYRFSLSWSRILPKGR 141
DGSN DV AD YH+YK+D++++ +G+ +YRFS++W R++P GR
Sbjct: 256 DGSNADVTADQYHKYKEDVKLLSDMGVDAYRFSIAWPRLIPDGR 387
>gb|BF627691.3|BF627691 HVSMEb0005I17f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0005I17f, mRNA sequence
Length = 849
Score = 119 bits (254), Expect(2) = 3e-041
Identities = 43/81 (53%), Positives = 58/81 (71%)
Frame = +1 / +2
Query: 145 GGVNQAGVKFYNSLINGLLEKGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAEL 324
G VNQ GV +YN+LIN LL+KGI P++ + HYD+P L+++Y WLN + F +A+
Sbjct: 470 GKVNQEGVAYYNNLINYLLQKGITPYINLYHYDLPLALEKKYGGWLNAKTGGLFADYADF 649
Query: 325 CFKXFGDRVKHWVTFNEPNLI 387
CFK FGDRVKHW TF EP ++
Sbjct: 650 CFKTFGDRVKHWFTFMEPGIV 712
Score = 68.9 bits (144), Expect(2) = 3e-041
Identities = 24/46 (52%), Positives = 30/46 (65%)
Frame = +1 / +2
Query: 1 NIDDGSNGDVAADHYHRYKDDIEMMHSIGLGSYRFSLSWSRILPKG 138
NI N DV D YHRYK+D+ +M + +YRFS+SWSRI P G
Sbjct: 329 NIAGNQNADVTTDQYHRYKEDVNLMKGLNFDAYRFSISWSRIFPDG 466
>gb|BQ472269.1|BQ472269 HV04O11r HV Hordeum vulgare subsp. vulgare cDNA clone HV04O11
5-PRIME, mRNA sequence
Length = 643
Score = 121 bits (258), Expect(2) = 3e-041
Identities = 43/80 (53%), Positives = 61/80 (76%)
Frame = +1 / +2
Query: 145 GGVNQAGVKFYNSLINGLLEKGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAEL 324
G VN G+++YN+LIN LL GIQP VT+ H+D+P+ LQ+ YN L+ + +D+T +A++
Sbjct: 386 GAVNAKGLEYYNNLINELLRHGIQPHVTVYHFDLPQALQDEYNGMLSRKFIDDYTVYADV 565
Query: 325 CFKXFGDRVKHWVTFNEPNL 384
CFK FGDRVK+W T NEPN+
Sbjct: 566 CFKNFGDRVKYWSTLNEPNI 625
Score = 67.0 bits (140), Expect(2) = 3e-041
Identities = 20/43 (46%), Positives = 34/43 (79%)
Frame = +1 / +2
Query: 13 GSNGDVAADHYHRYKDDIEMMHSIGLGSYRFSLSWSRILPKGR 141
G+ DV AD YH+YK+D++++ +G+ +YRFS++W R++P GR
Sbjct: 257 GATADVTADQYHKYKEDVKLLSEMGVDAYRFSIAWPRLIPDGR 385
>gb|AV916192.1|AV916192 AV916192 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags12a16 5', mRNA sequence
Length = 444
Score = 137 bits (294), Expect(3) = 6e-041
Identities = 50/98 (51%), Positives = 67/98 (68%)
Frame = +1 / +1
Query: 145 GGVNQAGVKFYNSLINGLLEKGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAEL 324
G VNQ GV +YN+LIN LL+KGI P++ + HYD+P L+++Y WLN + F +A+
Sbjct: 82 GKVNQEGVAYYNNLINYLLQKGITPYINLYHYDLPLALEKKYGGWLNAKTVGLFADYADF 261
Query: 325 CFKXFGDRVKHWVTFNEPNLIXKLAYSXXAFPPNXCSE 438
CFK FGDRVKHW TFNEP ++ L Y + PP CS+
Sbjct: 262 CFKTFGDRVKHWFTFNEPRIVALLGYDVGSNPPQRCSK 375
Score = 35.0 bits (70), Expect(3) = 6e-041
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1 / +3
Query: 64 IEMMHSIGLGSYRFSLSWSRILP 132
+ +M + +YRFS+SWSRI P
Sbjct: 3 VNLMKGLNFDAYRFSISWSRIFP 71
Score = 32.7 bits (65), Expect(3) = 6e-041
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +1 / +1
Query: 460 GNSSTXXYIXAHNMILAH 513
GNS+T YI AHN +LAH
Sbjct: 388 GNSATEPYIVAHNFLLAH 441
>gb|BU995874.1|BU995874 HM11K09r HM Hordeum vulgare subsp. vulgare cDNA clone HM11K09
5-PRIME, mRNA sequence
Length = 620
Score = 131 bits (280), Expect(3) = 8e-041
Identities = 51/110 (46%), Positives = 70/110 (63%)
Frame = +1 / +2
Query: 145 GGVNQAGVKFYNSLINGLLEKGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAEL 324
G VN G+++YN+LI+ LL GIQP VTI H+D P+ LQ+ YN L+ + +D+T +AE+
Sbjct: 86 GAVNPKGLEYYNNLIDELLAHGIQPHVTIYHFDFPQALQDEYNGMLSRKFVDDYTAYAEV 265
Query: 325 CFKXFGDRVKHWVTFNEPNLIXKLAYSXXAFPPNXCSEPYXKXXSGNSST 474
CFK FGDRVK+W T NEPN+ Y PP CS P+ N ++
Sbjct: 266 CFKNFGDRVKYWSTVNEPNIEPIGGYDQGILPPRRCSFPFGVLSCDNGNS 415
Score = 39.1 bits (79), Expect(3) = 8e-041
Identities = 13/27 (48%), Positives = 21/27 (77%)
Frame = +1 / +2
Query: 457 SGNSSTXXYIXAHNMILAHAKXXNIYR 537
+GNS+T YI AH+++LAHA ++Y+
Sbjct: 404 NGNSTTEPYIVAHHLLLAHASAASLYK 484
Score = 34.5 bits (69), Expect(3) = 8e-041
Identities = 10/20 (50%), Positives = 17/20 (85%)
Frame = +1 / +2
Query: 82 IGLGSYRFSLSWSRILPKGR 141
+G+ +YRFS++W R++P GR
Sbjct: 26 MGVDAYRFSIAWPRLIPDGR 85
>gb|AV923554.1|AV923554 AV923554 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd13j02 5', mRNA sequence
Length = 630
Score = 111 bits (236), Expect(2) = 1e-040
Identities = 40/80 (50%), Positives = 58/80 (72%)
Frame = +1 / +2
Query: 145 GGVNQAGVKFYNSLINGLLEKGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAEL 324
G VN G+++YN+LIN L++ GIQ V ++H D P+ L + Y WL+ +I EDFT FA++
Sbjct: 362 GAVNPKGLEYYNNLINELVQHGIQVHVMLSHLDFPQVLDDEYAGWLSPKIVEDFTAFADV 541
Query: 325 CFKXFGDRVKHWVTFNEPNL 384
CF+ FGDRV +W T +EPN+
Sbjct: 542 CFREFGDRVSYWTTIDEPNV 601
Score = 75.3 bits (158), Expect(2) = 1e-040
Identities = 27/46 (58%), Positives = 36/46 (78%)
Frame = +1 / +2
Query: 4 IDDGSNGDVAADHYHRYKDDIEMMHSIGLGSYRFSLSWSRILPKGR 141
+ D S GDVAAD YH+YKDD+++M L +YRFS+SWSR++P GR
Sbjct: 224 MSDKSTGDVAADGYHKYKDDVKLMVDTNLEAYRFSISWSRLIPNGR 361
>gb|BJ447807.1|BJ447807 BJ447807 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak17f19 5', mRNA sequence
Length = 628
Score = 111 bits (236), Expect(2) = 1e-040
Identities = 40/80 (50%), Positives = 58/80 (72%)
Frame = +1 / +3
Query: 145 GGVNQAGVKFYNSLINGLLEKGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAEL 324
G VN G+++YN+LIN L++ GIQ V ++H D P+ L + Y WL+ +I EDFT FA++
Sbjct: 363 GAVNPKGLEYYNNLINELVQHGIQVHVMLSHLDFPQVLDDEYAGWLSPKIVEDFTAFADV 542
Query: 325 CFKXFGDRVKHWVTFNEPNL 384
CF+ FGDRV +W T +EPN+
Sbjct: 543 CFREFGDRVSYWTTIDEPNV 602
Score = 75.3 bits (158), Expect(2) = 1e-040
Identities = 27/46 (58%), Positives = 36/46 (78%)
Frame = +1 / +3
Query: 4 IDDGSNGDVAADHYHRYKDDIEMMHSIGLGSYRFSLSWSRILPKGR 141
+ D S GDVAAD YH+YKDD+++M L +YRFS+SWSR++P GR
Sbjct: 225 MSDKSTGDVAADGYHKYKDDVKLMVDTNLEAYRFSISWSRLIPNGR 362
>gb|BF257586.2|BF257586 HVSMEf0013E13f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0013E13f, mRNA sequence
Length = 521
Score = 116 bits (248), Expect(2) = 1e-040
Identities = 41/92 (44%), Positives = 65/92 (70%)
Frame = +1 / +3
Query: 145 GGVNQAGVKFYNSLINGLLEKGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAEL 324
G VN+ GV +YN+LI+ ++++G+ P+V +NHYDIP LQ++Y+ +L+ +I F +AE
Sbjct: 204 GKVNKEGVTYYNNLIDYVIKQGLTPYVNLNHYDIPLALQKKYDGFLSPKIVNIFADYAEF 383
Query: 325 CFKXFGDRVKHWVTFNEPNLIXKLAYSXXAFP 420
CFK +GDR+K+W TFNEP ++ L + P
Sbjct: 384 CFKTYGDRIKNWFTFNEPRIVSALGFDTGTNP 479
Score = 69.8 bits (146), Expect(2) = 1e-040
Identities = 24/46 (52%), Positives = 34/46 (73%)
Frame = +1 / +3
Query: 1 NIDDGSNGDVAADHYHRYKDDIEMMHSIGLGSYRFSLSWSRILPKG 138
NI + +N VA D YHRYK+D++++ S+ +YRFS+SWSRI P G
Sbjct: 63 NIAENANAYVATDEYHRYKEDVDLLKSLNFDAYRFSISWSRIFPDG 200
>gb|BU985650.1|BU985650 HF08D13r HF Hordeum vulgare subsp. vulgare cDNA clone HF08D13
5-PRIME, mRNA sequence
Length = 473
Score = 117 bits (250), Expect(2) = 1e-040
Identities = 43/77 (55%), Positives = 56/77 (72%)
Frame = +1 / +1
Query: 145 GGVNQAGVKFYNSLINGLLEKGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAEL 324
G VNQ GV +YN+LIN LL+KGI P++ + HYD+P L+++Y WLN + F +A+
Sbjct: 241 GKVNQEGVAYYNNLINYLLQKGITPYINLYHYDLPLALEKKYGGWLNAKTVGLFADYADF 420
Query: 325 CFKXFGDRVKHWVTFNE 375
CFK FGDRVKHW TFNE
Sbjct: 421 CFKTFGDRVKHWFTFNE 471
Score = 68.9 bits (144), Expect(2) = 1e-040
Identities = 24/46 (52%), Positives = 30/46 (65%)
Frame = +1 / +1
Query: 1 NIDDGSNGDVAADHYHRYKDDIEMMHSIGLGSYRFSLSWSRILPKG 138
NI N DV D YHRYK+D+ +M + +YRFS+SWSRI P G
Sbjct: 100 NIAGNQNADVTTDQYHRYKEDVNLMKGLNFDAYRFSISWSRIFPDG 237
>gb|CB882677.1|CB882677 HL02I17w HL Hordeum vulgare subsp. vulgare cDNA clone HL02I17
3-PRIME, mRNA sequence
Length = 598
Score = 104 bits (222), Expect(2) = 3e-039
Identities = 37/76 (48%), Positives = 55/76 (72%)
Frame = +1 / +1
Query: 145 GGVNQAGVKFYNSLINGLLEKGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAEL 324
G VN G+++YN+LIN L ++GIQ VT+ H D P+ L++ Y+ WL+ + +DFT FA+
Sbjct: 370 GPVNPKGLEYYNNLINELTKRGIQIHVTLYHLDFPQILEDEYHGWLSPRVVDDFTAFADA 549
Query: 325 CFKXFGDRVKHWVTFN 372
CF+ FGDRV+HW T +
Sbjct: 550 CFREFGDRVRHWTTMD 597
Score = 76.7 bits (161), Expect(2) = 3e-039
Identities = 27/44 (61%), Positives = 36/44 (81%)
Frame = +1 / +1
Query: 10 DGSNGDVAADHYHRYKDDIEMMHSIGLGSYRFSLSWSRILPKGR 141
D S GD+ AD YHRYK+D+E+M GL +YRFS+SWSR++P+GR
Sbjct: 238 DKSTGDLGADGYHRYKEDVELMVDTGLEAYRFSISWSRLIPRGR 369
>gb|BU998469.1|BU998469 HI11C15r HI Hordeum vulgare subsp. vulgare cDNA clone HI11C15
5-PRIME, mRNA sequence
Length = 650
Score = 155 bits (333), Expect(2) = 6e-039
Identities = 55/111 (49%), Positives = 76/111 (68%)
Frame = +1 / +3
Query: 205 KGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAELCFKXFGDRVKHWVTFNEPNL 384
+GI+PFVT++H+D+P EL+ R+ WL I+E+F Y+A++CFK FGDRVK W T NEPNL
Sbjct: 48 EGIEPFVTLHHFDLPHELETRHGGWLGAGIREEFGYYADVCFKAFGDRVKFWTTLNEPNL 227
Query: 385 IXKLAYSXXAFPPNXCSEPYXKXXSGNSSTXXYIXAHNMILAHAKXXNIYR 537
K AY +PP CS P+ SG+S Y+ AHNMI++HA + Y+
Sbjct: 228 FTKFAYMLGQYPPKHCSPPFGTCNSGDSRREPYVAAHNMIMSHAAAVDNYK 380
Score = 24.9 bits (48), Expect(2) = 6e-039
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = +1 / +1
Query: 172 FYNSLINGLLEKG 210
FYN LI LLEKG
Sbjct: 16 FYNRLIAALLEKG 54
>gb|BF620280.1|BF620280 HVSMEc0019E21f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0019E21f, mRNA sequence
Length = 864
Score = 73.9 bits (155), Expect(4) = 9e-039
Identities = 25/46 (54%), Positives = 35/46 (76%)
Frame = +1 / +3
Query: 1 NIDDGSNGDVAADHYHRYKDDIEMMHSIGLGSYRFSLSWSRILPKG 138
NI + +N DVA D YHRYK+D++++ S+ +YRFS+SWSRI P G
Sbjct: 312 NIAENANADVATDEYHRYKEDVDLLKSLNFDAYRFSISWSRIFPDG 449
Score = 61.1 bits (127), Expect(4) = 9e-039
Identities = 21/42 (50%), Positives = 34/42 (80%)
Frame = +1 / +3
Query: 145 GGVNQAGVKFYNSLINGLLEKGIQPFVTINHYDIPEELQERY 270
G VN+ GV +YN+LI+ ++++G+ P+V +NHYDIP LQ++Y
Sbjct: 453 GKVNKEGVTYYNNLIDYVIKQGLTPYVNLNHYDIPLALQKKY 578
Score = 51.0 bits (105), Expect(4) = 9e-039
Identities = 17/38 (44%), Positives = 25/38 (65%)
Frame = +1 / +2
Query: 325 CFKXFGDRVKHWVTFNEPNLIXKLAYSXXAFPPNXCSE 438
CFK +GDR+K+WVTF+EP ++ L PP C++
Sbjct: 635 CFKTYGDRIKNWVTFHEPRIVAALGL*YWNEPPYRCTK 748
Score = 29.5 bits (58), Expect(4) = 9e-039
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +1 / +2
Query: 460 GNSSTXXYIXAHNMILAHA 516
GNS+T Y HNM+L HA
Sbjct: 761 GNSTTDPYTGVHNMLLWHA 817
>gb|CA015072.1|CA015072 HT13C22r HT Hordeum vulgare subsp. vulgare cDNA clone HT13C22
5-PRIME, mRNA sequence
Length = 613
Score = 111 bits (238), Expect(2) = 2e-038
Identities = 40/76 (52%), Positives = 57/76 (75%)
Frame = +1 / +1
Query: 145 GGVNQAGVKFYNSLINGLLEKGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAEL 324
G VN G+++YN+LIN LL GIQP VT+ H+D+P+ LQ+ YN L+ + +D+T +A++
Sbjct: 385 GAVNAKGLEYYNNLINELLRHGIQPHVTVYHFDLPQALQDEYNGMLSRKFIDDYTVYADV 564
Query: 325 CFKXFGDRVKHWVTFN 372
CFK FGDRVK+W T N
Sbjct: 565 CFKNFGDRVKYWSTLN 612
Score = 67.0 bits (140), Expect(2) = 2e-038
Identities = 20/43 (46%), Positives = 34/43 (79%)
Frame = +1 / +1
Query: 13 GSNGDVAADHYHRYKDDIEMMHSIGLGSYRFSLSWSRILPKGR 141
G+ DV AD YH+YK+D++++ +G+ +YRFS++W R++P GR
Sbjct: 256 GATADVTADQYHKYKEDVKLLSEMGVDAYRFSIAWPRLIPDGR 384
>gb|BU988606.1|BU988606 HF18C11r HF Hordeum vulgare subsp. vulgare cDNA clone HF18C11
5-PRIME, mRNA sequence
Length = 636
Score = 107 bits (229), Expect(4) = 4e-038
Identities = 37/78 (47%), Positives = 51/78 (65%)
Frame = +1 / +1
Query: 205 KGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAELCFKXFGDRVKHWVTFNEPNL 384
KGI P++ + HYD+P L+++Y WLN + F +A+ CFK FGDRVKHW TFNEP +
Sbjct: 142 KGITPYINLYHYDLPLALEKKYGGWLNAKTVGLFADYADFCFKTFGDRVKHWFTFNEPRI 321
Query: 385 IXKLAYSXXAFPPNXCSE 438
+ L Y + PP CS+
Sbjct: 322 VALLGYDVGSNPPQRCSK 375
Score = 35.9 bits (72), Expect(4) = 4e-038
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1 / +2
Query: 70 MMHSIGLGSYRFSLSWSRILPKG 138
+M + +YRFS+SWSRI P G
Sbjct: 11 LMKGLNFDAYRFSISWSRIFPDG 79
Score = 35.0 bits (70), Expect(4) = 4e-038
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +1 / +2
Query: 145 GGVNQAGVKFYNSLINGLLEKGI 213
G VNQ GV +YN+LIN LL K +
Sbjct: 83 GKVNQEGVAYYNNLINYLLRKAL 151
Score = 34.5 bits (69), Expect(4) = 4e-038
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +1 / +1
Query: 460 GNSSTXXYIXAHNMILAHAKXXNIYR 537
GNS+T YI AHN +LAH YR
Sbjct: 388 GNSATEPYIVAHNFLLAHGYAVARYR 465
>gb|BU997130.1|BU997130 HI07A02r HI Hordeum vulgare subsp. vulgare cDNA clone HI07A02
5-PRIME, mRNA sequence
Length = 632
Score = 127 bits (271), Expect(3) = 1e-037
Identities = 44/98 (44%), Positives = 70/98 (71%)
Frame = +1 / +3
Query: 145 GGVNQAGVKFYNSLINGLLEKGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAEL 324
G VN+ GV +YN+LI+ ++++G+ P+V +NHYDIP LQ++Y+ +L+ +I F +AE
Sbjct: 60 GKVNKEGVTYYNNLIDYVIKQGLTPYVNLNHYDIPLALQKKYDGFLSPKIVNIFADYAEF 239
Query: 325 CFKXFGDRVKHWVTFNEPNLIXKLAYSXXAFPPNXCSE 438
CFK +GDR+K+W TFNEP ++ L + PPN C++
Sbjct: 240 CFKTYGDRIKNWFTFNEPRIVAALGFDTGTNPPNRCTK 353
Score = 34.1 bits (68), Expect(3) = 1e-037
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1 / +3
Query: 460 GNSSTXXYIXAHNMILAHAKXXNIYRN 540
GNS+T Y HN++L HA YRN
Sbjct: 366 GNSATEPYTVVHNILLCHATAVARYRN 446
Score = 33.1 bits (66), Expect(3) = 1e-037
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +1 / +3
Query: 91 GSYRFSLSWSRILPKG 138
G+YRF +SWSRI P G
Sbjct: 9 GAYRFPISWSRIFPDG 56
>gb|BE601754.2|BE601754 HVSMEh0099G19f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0099G19f, mRNA sequence
Length = 505
Score = 121 bits (259), Expect(3) = 2e-037
Identities = 46/98 (46%), Positives = 63/98 (64%)
Frame = +1 / +2
Query: 145 GGVNQAGVKFYNSLINGLLEKGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAEL 324
G VNQ GV +YN LI+ +L++GI P+ + HYD+P L ++Y WL+ +I F +AE
Sbjct: 86 GKVNQEGVDYYNRLIDYMLQQGITPYANLYHYDLPLALHQQYLGWLSPKIVGAFADYAEF 265
Query: 325 CFKXFGDRVKHWVTFNEPNLIXKLAYSXXAFPPNXCSE 438
CFK FGDRVK+W TFNEP ++ L Y P CS+
Sbjct: 266 CFKVFGDRVKNWFTFNEPRVVAALGYDNGFHAPGRCSK 379
Score = 42.3 bits (86), Expect(3) = 2e-037
Identities = 14/27 (51%), Positives = 21/27 (77%)
Frame = +1 / +2
Query: 58 DDIEMMHSIGLGSYRFSLSWSRILPKG 138
+D+ +M ++G +YRFS+SWSRI P G
Sbjct: 2 EDVGIMKNMGFDAYRFSISWSRIFPDG 82
Score = 29.5 bits (58), Expect(3) = 2e-037
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1 / +2
Query: 460 GNSSTXXYIXAHNMILAHA 516
G+S T YI HN+IL+HA
Sbjct: 392 GDSRTEPYIVTHNIILSHA 448
>gb|CA032870.1|CA032870 HX14G24r HX Hordeum vulgare subsp. vulgare cDNA clone HX14G24
5-PRIME, mRNA sequence
Length = 631
Score = 102 bits (218), Expect(2) = 2e-036
Identities = 38/71 (53%), Positives = 51/71 (71%)
Frame = +1 / +2
Query: 145 GGVNQAGVKFYNSLINGLLEKGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAEL 324
G VNQ GV +YN+LIN LL+KGI P++ + HYD+P L+++Y WLN + F +A+
Sbjct: 419 GKVNQEGVAYYNNLINYLLQKGITPYINLYHYDLPLALEKKYGGWLNAKTVGLFADYADF 598
Query: 325 CFKXFGDRVKH 357
CFK FGDRVKH
Sbjct: 599 CFKTFGDRVKH 631
Score = 68.9 bits (144), Expect(2) = 2e-036
Identities = 24/46 (52%), Positives = 30/46 (65%)
Frame = +1 / +2
Query: 1 NIDDGSNGDVAADHYHRYKDDIEMMHSIGLGSYRFSLSWSRILPKG 138
NI N DV D YHRYK+D+ +M + +YRFS+SWSRI P G
Sbjct: 278 NIAGNQNADVTTDQYHRYKEDVNLMKGLNFDAYRFSISWSRIFPDG 415
>gb|CA002958.1|CA002958 HS09A03r HS Hordeum vulgare subsp. vulgare cDNA clone HS09A03
5-PRIME, mRNA sequence
Length = 447
Score = 134 bits (287), Expect(2) = 3e-036
Identities = 51/108 (47%), Positives = 72/108 (66%)
Frame = +1 / +2
Query: 151 VNQAGVKFYNSLINGLLEKGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAELCF 330
VN G+++YN+LIN LL GIQP VT+ H+D+P+ LQ+ YN L+ + +D+T +A++CF
Sbjct: 11 VNAKGLEYYNNLINELLRHGIQPHVTVYHFDLPQALQDEYNGMLSRKFIDDYTVYADVCF 190
Query: 331 KXFGDRVKHWVTFNEPNLIXKLAYSXXAFPPNXCSEPYXKXXSGNSST 474
K FGDRVK+W T NEPN+ Y FPP CS P+ + +ST
Sbjct: 191 KNFGDRVKYWSTLNEPNIEPIGGYDQGFFPPQRCSLPFGISCNNGNST 334
Score = 36.8 bits (74), Expect(2) = 3e-036
Identities = 12/27 (44%), Positives = 20/27 (74%)
Frame = +1 / +2
Query: 457 SGNSSTXXYIXAHNMILAHAKXXNIYR 537
+GNS+T YI H+++LAHA ++Y+
Sbjct: 320 NGNSTTEPYIVTHHLLLAHASAVSLYK 400
>gb|BI947104.1|BI947104 HVSMEl0003L04f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0003L04f, mRNA sequence
Length = 1046
Score = 131 bits (280), Expect(2) = 6e-036
Identities = 51/110 (46%), Positives = 70/110 (63%)
Frame = +1 / +2
Query: 145 GGVNQAGVKFYNSLINGLLEKGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAEL 324
G VN G+++YN+LI+ LL GIQP VTI H+D P+ LQ+ YN L+ + +D+T +AE+
Sbjct: 41 GAVNPKGLEYYNNLIDELLAHGIQPHVTIYHFDFPQALQDEYNGMLSRKFVDDYTAYAEV 220
Query: 325 CFKXFGDRVKHWVTFNEPNLIXKLAYSXXAFPPNXCSEPYXKXXSGNSST 474
CFK FGDRVK+W T NEPN+ Y PP CS P+ N ++
Sbjct: 221 CFKNFGDRVKYWSTVNEPNIEPIGGYDQGILPPRRCSFPFGVLSCDNGNS 370
Score = 39.1 bits (79), Expect(2) = 6e-036
Identities = 13/27 (48%), Positives = 21/27 (77%)
Frame = +1 / +2
Query: 457 SGNSSTXXYIXAHNMILAHAKXXNIYR 537
+GNS+T YI AH+++LAHA ++Y+
Sbjct: 359 NGNSTTEPYIVAHHLLLAHASAASLYK 439
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 192,899,158
Number of Sequences: 312970
Number of extensions: 2108914
Number of successful extensions: 28836
Number of sequences better than 1.0e-020: 139
length of database: 58,378,179
effective HSP length: 50
effective length of database: 42,729,679
effective search space used: 5512128591
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)