TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAR1e04.yg.2.1
(405 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE421314.1|BE421314 HWM008.A07 ITEC HWM Barley Leaf Libr... 127 8e-049
gb|BM375016.1|BM375016 EBem06_SQ002_B13_R embryo, 21 DPA, n... 188 1e-047
gb|BM370593.2|BM370593 EBro08_SQ004_L01_R root, 3 week, dro... 151 2e-036
gb|AL450828.1|AL450828 AL450828 Hordeum vulgare Barke etiol... 127 2e-029
gb|AV914143.1|AV914143 AV914143 K. Sato unpublished cDNA li... 127 2e-029
gb|AV915913.1|AV915913 AV915913 K. Sato unpublished cDNA li... 127 2e-029
gb|AV917804.1|AV917804 AV917804 K. Sato unpublished cDNA li... 127 2e-029
gb|AV918146.1|AV918146 AV918146 K. Sato unpublished cDNA li... 127 2e-029
gb|AV918330.1|AV918330 AV918330 K. Sato unpublished cDNA li... 127 2e-029
gb|AV918386.1|AV918386 AV918386 K. Sato unpublished cDNA li... 127 2e-029
gb|AV919189.1|AV919189 AV919189 K. Sato unpublished cDNA li... 127 2e-029
gb|AV919660.1|AV919660 AV919660 K. Sato unpublished cDNA li... 127 2e-029
gb|AV921030.1|AV921030 AV921030 K. Sato unpublished cDNA li... 127 2e-029
gb|AV921212.1|AV921212 AV921212 K. Sato unpublished cDNA li... 127 2e-029
gb|AV921340.1|AV921340 AV921340 K. Sato unpublished cDNA li... 127 2e-029
gb|AV922151.1|AV922151 AV922151 K. Sato unpublished cDNA li... 127 2e-029
gb|AV922439.1|AV922439 AV922439 K. Sato unpublished cDNA li... 127 2e-029
gb|AV930978.1|AV930978 AV930978 K. Sato unpublished cDNA li... 127 2e-029
gb|AJ434805.1|AJ434805 AJ434805 S00002 Hordeum vulgare subs... 127 2e-029
gb|BJ462471.1|BJ462471 BJ462471 K. Sato unpublished cDNA li... 127 2e-029
gb|BJ464713.1|BJ464713 BJ464713 K. Sato unpublished cDNA li... 127 2e-029
gb|BJ466235.1|BJ466235 BJ466235 K. Sato unpublished cDNA li... 127 2e-029
gb|BJ466891.1|BJ466891 BJ466891 K. Sato unpublished cDNA li... 127 2e-029
gb|BJ467149.1|BJ467149 BJ467149 K. Sato unpublished cDNA li... 127 2e-029
gb|BJ468002.1|BJ468002 BJ468002 K. Sato unpublished cDNA li... 127 2e-029
gb|BJ468113.1|BJ468113 BJ468113 K. Sato unpublished cDNA li... 127 2e-029
gb|BJ468402.1|BJ468402 BJ468402 K. Sato unpublished cDNA li... 127 2e-029
gb|BJ468540.1|BJ468540 BJ468540 K. Sato unpublished cDNA li... 127 2e-029
gb|CA000217.1|CA000217 HS09L06u HS Hordeum vulgare subsp. v... 127 2e-029
gb|CA000352.1|CA000352 HS08P05u HS Hordeum vulgare subsp. v... 127 2e-029
gb|CA004365.1|CA004365 HS17F22r HS Hordeum vulgare subsp. v... 127 2e-029
gb|CA004933.1|CA004933 HU12M11u HU Hordeum vulgare subsp. v... 127 2e-029
gb|CA006323.1|CA006323 HU14F11u HU Hordeum vulgare subsp. v... 127 2e-029
gb|CA006380.1|CA006380 HU14H21u HU Hordeum vulgare subsp. v... 127 2e-029
gb|CA011357.1|CA011357 HT06C03u HT Hordeum vulgare subsp. v... 127 2e-029
gb|CA016005.1|CA016005 HV11A05u HV Hordeum vulgare subsp. v... 127 2e-029
gb|CA017123.1|CA017123 HV14L14u HV Hordeum vulgare subsp. v... 127 2e-029
gb|CA018696.1|CA018696 HV09G03r HV Hordeum vulgare subsp. v... 127 2e-029
gb|BF256602.3|BF256602 HVSMEf0010H12f Hordeum vulgare seedl... 98 2e-028
gb|AV922440.1|AV922440 AV922440 K. Sato unpublished cDNA li... 124 2e-028
gb|BJ467932.1|BJ467932 BJ467932 K. Sato unpublished cDNA li... 124 2e-028
gb|AL500002.1|AL500002 AL500002 Hordeum vulgare Barke etiol... 122 1e-027
gb|BF255910.2|BF255910 HVSMEf0008C22f Hordeum vulgare seedl... 120 3e-027
gb|BU990324.1|BU990324 HF24L04r HF Hordeum vulgare subsp. v... 120 5e-027
gb|BM370831.2|BM370831 EBro04_SQ002_G23_R root, 3 week, sal... 86 5e-026
gb|BE214373.1|BE214373 HV_CEb0003E06f Hordeum vulgare seedl... 77 2e-025
gb|BJ463756.1|BJ463756 BJ463756 K. Sato unpublished cDNA li... 79 6e-025
gb|CA015948.1|CA015948 HV11J19u HV Hordeum vulgare subsp. v... 112 1e-024
gb|BI958400.1|BI958400 HVSMEn0014M17f Hordeum vulgare rachi... 111 3e-024
gb|AV913050.1|AV913050 AV913050 K. Sato unpublished cDNA li... 79 4e-024
gb|AV917348.1|AV917348 AV917348 K. Sato unpublished cDNA li... 109 7e-024
gb|AV922527.1|AV922527 AV922527 K. Sato unpublished cDNA li... 109 7e-024
gb|BF257531.2|BF257531 HVSMEf0013C16f Hordeum vulgare seedl... 99 3e-023
gb|AL505263.1|AL505263 AL505263 Hordeum vulgare Barke roots... 106 5e-023
gb|BF259968.2|BF259968 HVSMEf0020M01f Hordeum vulgare seedl... 106 5e-023
gb|CA030032.1|CA030032 HX05O06r HX Hordeum vulgare subsp. v... 106 5e-023
gb|CA020103.1|CA020103 HV14F14r HV Hordeum vulgare subsp. v... 104 3e-022
>gb|BE421314.1|BE421314 HWM008.A07 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM008.A07, mRNA sequence
Length = 905
Score = 127 bits (271), Expect(2) = 8e-049
Identities = 47/59 (79%), Positives = 51/59 (86%)
Frame = +1 / +2
Query: 1 NHPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPG 177
NHPIHLHGYDFYILAEGFGN+DA D FN+++PP RNTV VPVNGWAVIRF ADNPG
Sbjct: 383 NHPIHLHGYDFYILAEGFGNYDAEKDADKFNLENPPQRNTVAVPVNGWAVIRFRADNPG 559
Score = 101 bits (216), Expect(2) = 6e-037
Identities = 44/58 (75%), Positives = 45/58 (77%)
Frame = -2 / -3
Query: 176 PGLSATKRMTAQPLTGTPTVFLMGGSSMLKLAVSAXASKLPKPSARM*KS*PWRWMGW 3
PGLSA RMTAQP TGT TVFL GG S L L+ S AS LPKPSARM*KS PWRWMGW
Sbjct: 558 PGLSARNRMTAQPFTGTATVFL*GGFSRLNLSASFSAS*LPKPSARM*KSYPWRWMGW 385
Score = 85.8 bits (181), Expect(2) = 8e-049
Identities = 34/45 (75%), Positives = 37/45 (82%)
Frame = +1 / +1
Query: 172 PGXXLMHCHLDVHITWGLAMAFLVEDGVGEMQSLEAXXXDXXIC* 306
PG +MHCHLDVHITWGLAMAFLVEDG GE+QSLEA D +C*
Sbjct: 553 PGGVVMHCHLDVHITWGLAMAFLVEDGYGELQSLEAPPVDLPMC* 687
Score = 71.2 bits (149), Expect(2) = 6e-037
Identities = 29/40 (72%), Positives = 31/40 (77%)
Frame = -2 / -1
Query: 290 SXXXASSDCISPTPSSTRNAMARPQVMCTSRWQCMSXXPG 171
S AS D SP PSSTRNA+ARPQVMCTSRWQCM+ PG
Sbjct: 671 STGGASRD*SSPYPSSTRNAIARPQVMCTSRWQCMTTPPG 552
>gb|BM375016.1|BM375016 EBem06_SQ002_B13_R embryo, 21 DPA, no treatment, cv Optic, EBem06
Hordeum vulgare subsp. vulgare cDNA clone
EBem06_SQ002_B13 5', mRNA sequence
Length = 389
Score = 188 bits (406), Expect = 1e-047
Identities = 71/78 (91%), Positives = 73/78 (93%)
Frame = +1 / -3
Query: 1 NHPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGX 180
NHPIHLHGYDF+ILAEGFGNFDA DTA FN+DDPPMRNTVGVPVNGWAVIRFVADNPG
Sbjct: 234 NHPIHLHGYDFFILAEGFGNFDAATDTAKFNLDDPPMRNTVGVPVNGWAVIRFVADNPGV 55
Query: 181 XLMHCHLDVHITWGLAMA 234
LMHCHLDVHITWGLAMA
Sbjct: 54 WLMHCHLDVHITWGLAMA 1
Score = 157 bits (337), Expect = 3e-038
Identities = 63/77 (81%), Positives = 66/77 (85%)
Frame = -2 / +2
Query: 233 AMARPQVMCTSRWQCMSXXPGLSATKRMTAQPLTGTPTVFLMGGSSMLKLAVSAXASKLP 54
AMARPQVMCTSRWQC+S PGLSAT RMTA P TGTPTVFL+GGSS L AVS ASKLP
Sbjct: 2 AMARPQVMCTSRWQCISHTPGLSATNRMTAHPFTGTPTVFLIGGSSRLNFAVSVAASKLP 181
Query: 53 KPSARM*KS*PWRWMGW 3
KPSARM KS*PWRW+GW
Sbjct: 182 KPSARMKKS*PWRWIGW 232
>gb|BM370593.2|BM370593 EBro08_SQ004_L01_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ004_L01 5', mRNA sequence
Length = 655
Score = 151 bits (324), Expect = 2e-036
Identities = 55/101 (54%), Positives = 69/101 (68%)
Frame = +1 / +2
Query: 1 NHPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGX 180
+HP+HLHGYD ++L GFGN+DA DT +N+ DP RNT+ VP GW IRFVA+NPG
Sbjct: 209 SHPLHLHGYDLHVLGTGFGNYDAANDTDGYNLVDPEQRNTISVPTAGWVAIRFVANNPGV 388
Query: 181 XLMHCHLDVHITWGLAMAFLVEDGVGEMQSLEAXXXDXXIC 303
+MHCHLDVH++WGL+MA+LV DG L D C
Sbjct: 389 WIMHCHLDVHLSWGLSMAWLVNDGPLPNHKLPPAPSDIPSC 511
>gb|AL450828.1|AL450828 AL450828 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK04H03u 5', mRNA sequence
Length = 524
Score = 127 bits (273), Expect = 2e-029
Identities = 45/83 (54%), Positives = 64/83 (77%)
Frame = +1 / +3
Query: 4 HPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGXX 183
+P+HLHG D ++LA+G G +DA D A++N+ DPP+RNTV VP+ GWAV+RFV NPG
Sbjct: 96 NPMHLHGQDMFVLAQGLGRYDAEKDVATYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVW 275
Query: 184 LMHCHLDVHITWGLAMAFLVEDG 252
+HCH + H + G+A+AF+VE+G
Sbjct: 276 FLHCHFENHSSGGMAVAFVVENG 344
>gb|AV914143.1|AV914143 AV914143 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags4o18 5', mRNA sequence
Length = 539
Score = 127 bits (273), Expect = 2e-029
Identities = 45/83 (54%), Positives = 64/83 (77%)
Frame = +1 / +2
Query: 4 HPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGXX 183
+P+HLHG D ++LA+G G +DA D A++N+ DPP+RNTV VP+ GWAV+RFV NPG
Sbjct: 167 NPMHLHGQDMFVLAQGLGRYDAEKDVATYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVW 346
Query: 184 LMHCHLDVHITWGLAMAFLVEDG 252
+HCH + H + G+A+AF+VE+G
Sbjct: 347 FLHCHFENHSSGGMAVAFVVENG 415
>gb|AV915913.1|AV915913 AV915913 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags16j17 5', mRNA sequence
Length = 533
Score = 127 bits (273), Expect = 2e-029
Identities = 45/83 (54%), Positives = 64/83 (77%)
Frame = +1 / +2
Query: 4 HPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGXX 183
+P+HLHG D ++LA+G G +DA D A++N+ DPP+RNTV VP+ GWAV+RFV NPG
Sbjct: 128 NPMHLHGQDMFVLAQGLGRYDAEKDVATYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVW 307
Query: 184 LMHCHLDVHITWGLAMAFLVEDG 252
+HCH + H + G+A+AF+VE+G
Sbjct: 308 FLHCHFENHSSGGMAVAFVVENG 376
>gb|AV917804.1|AV917804 AV917804 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags11j12 3', mRNA sequence
Length = 591
Score = 127 bits (273), Expect = 2e-029
Identities = 45/83 (54%), Positives = 64/83 (77%)
Frame = +1 / -3
Query: 4 HPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGXX 183
+P+HLHG D ++LA+G G +DA D A++N+ DPP+RNTV VP+ GWAV+RFV NPG
Sbjct: 376 NPMHLHGQDMFVLAQGLGRYDAEKDVATYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVW 197
Query: 184 LMHCHLDVHITWGLAMAFLVEDG 252
+HCH + H + G+A+AF+VE+G
Sbjct: 196 FLHCHFENHSSGGMAVAFVVENG 128
>gb|AV918146.1|AV918146 AV918146 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20a14 3', mRNA sequence
Length = 698
Score = 127 bits (273), Expect = 2e-029
Identities = 45/83 (54%), Positives = 64/83 (77%)
Frame = +1 / -3
Query: 4 HPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGXX 183
+P+HLHG D ++LA+G G +DA D A++N+ DPP+RNTV VP+ GWAV+RFV NPG
Sbjct: 483 NPMHLHGQDMFVLAQGLGRYDAEKDVATYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVW 304
Query: 184 LMHCHLDVHITWGLAMAFLVEDG 252
+HCH + H + G+A+AF+VE+G
Sbjct: 303 FLHCHFENHSSGGMAVAFVVENG 235
>gb|AV918330.1|AV918330 AV918330 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20l02 3', mRNA sequence
Length = 624
Score = 127 bits (273), Expect = 2e-029
Identities = 45/83 (54%), Positives = 64/83 (77%)
Frame = +1 / -2
Query: 4 HPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGXX 183
+P+HLHG D ++LA+G G +DA D A++N+ DPP+RNTV VP+ GWAV+RFV NPG
Sbjct: 404 NPMHLHGQDMFVLAQGLGRYDAEKDVATYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVW 225
Query: 184 LMHCHLDVHITWGLAMAFLVEDG 252
+HCH + H + G+A+AF+VE+G
Sbjct: 224 FLHCHFENHSSGGMAVAFVVENG 156
>gb|AV918386.1|AV918386 AV918386 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20n23 3', mRNA sequence
Length = 638
Score = 127 bits (273), Expect = 2e-029
Identities = 45/83 (54%), Positives = 64/83 (77%)
Frame = +1 / -2
Query: 4 HPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGXX 183
+P+HLHG D ++LA+G G +DA D A++N+ DPP+RNTV VP+ GWAV+RFV NPG
Sbjct: 535 NPMHLHGQDMFVLAQGLGRYDAEKDVATYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVW 356
Query: 184 LMHCHLDVHITWGLAMAFLVEDG 252
+HCH + H + G+A+AF+VE+G
Sbjct: 355 FLHCHFENHSSGGMAVAFVVENG 287
>gb|AV919189.1|AV919189 AV919189 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags4o18 3', mRNA sequence
Length = 636
Score = 127 bits (273), Expect = 2e-029
Identities = 45/83 (54%), Positives = 64/83 (77%)
Frame = +1 / -2
Query: 4 HPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGXX 183
+P+HLHG D ++LA+G G +DA D A++N+ DPP+RNTV VP+ GWAV+RFV NPG
Sbjct: 533 NPMHLHGQDMFVLAQGLGRYDAEKDVATYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVW 354
Query: 184 LMHCHLDVHITWGLAMAFLVEDG 252
+HCH + H + G+A+AF+VE+G
Sbjct: 353 FLHCHFENHSSGGMAVAFVVENG 285
>gb|AV919660.1|AV919660 AV919660 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags7a21 3', mRNA sequence
Length = 710
Score = 127 bits (273), Expect = 2e-029
Identities = 45/83 (54%), Positives = 64/83 (77%)
Frame = +1 / -1
Query: 4 HPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGXX 183
+P+HLHG D ++LA+G G +DA D A++N+ DPP+RNTV VP+ GWAV+RFV NPG
Sbjct: 494 NPMHLHGQDMFVLAQGLGRYDAEKDVATYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVW 315
Query: 184 LMHCHLDVHITWGLAMAFLVEDG 252
+HCH + H + G+A+AF+VE+G
Sbjct: 314 FLHCHFENHSSGGMAVAFVVENG 246
>gb|AV921030.1|AV921030 AV921030 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags16j17 3', mRNA sequence
Length = 663
Score = 127 bits (273), Expect = 2e-029
Identities = 45/83 (54%), Positives = 64/83 (77%)
Frame = +1 / -2
Query: 4 HPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGXX 183
+P+HLHG D ++LA+G G +DA D A++N+ DPP+RNTV VP+ GWAV+RFV NPG
Sbjct: 533 NPMHLHGQDMFVLAQGLGRYDAEKDVATYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVW 354
Query: 184 LMHCHLDVHITWGLAMAFLVEDG 252
+HCH + H + G+A+AF+VE+G
Sbjct: 353 FLHCHFENHSSGGMAVAFVVENG 285
>gb|AV921212.1|AV921212 AV921212 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags1g21 3', mRNA sequence
Length = 538
Score = 127 bits (273), Expect = 2e-029
Identities = 45/83 (54%), Positives = 64/83 (77%)
Frame = +1 / -2
Query: 4 HPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGXX 183
+P+HLHG D ++LA+G G +DA D A++N+ DPP+RNTV VP+ GWAV+RFV NPG
Sbjct: 501 NPMHLHGQDMFVLAQGLGRYDAEKDVATYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVW 322
Query: 184 LMHCHLDVHITWGLAMAFLVEDG 252
+HCH + H + G+A+AF+VE+G
Sbjct: 321 FLHCHFENHSSGGMAVAFVVENG 253
>gb|AV921340.1|AV921340 AV921340 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23b16 3', mRNA sequence
Length = 654
Score = 127 bits (273), Expect = 2e-029
Identities = 45/83 (54%), Positives = 64/83 (77%)
Frame = +1 / -1
Query: 4 HPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGXX 183
+P+HLHG D ++LA+G G +DA D A++N+ DPP+RNTV VP+ GWAV+RFV NPG
Sbjct: 438 NPMHLHGQDMFVLAQGLGRYDAEKDVATYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVW 259
Query: 184 LMHCHLDVHITWGLAMAFLVEDG 252
+HCH + H + G+A+AF+VE+G
Sbjct: 258 FLHCHFENHSSGGMAVAFVVENG 190
>gb|AV922151.1|AV922151 AV922151 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags19n20 3', mRNA sequence
Length = 674
Score = 127 bits (273), Expect = 2e-029
Identities = 45/83 (54%), Positives = 64/83 (77%)
Frame = +1 / -3
Query: 4 HPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGXX 183
+P+HLHG D ++LA+G G +DA D A++N+ DPP+RNTV VP+ GWAV+RFV NPG
Sbjct: 393 NPMHLHGQDMFVLAQGLGRYDAEKDVATYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVW 214
Query: 184 LMHCHLDVHITWGLAMAFLVEDG 252
+HCH + H + G+A+AF+VE+G
Sbjct: 213 FLHCHFENHSSGGMAVAFVVENG 145
>gb|AV922439.1|AV922439 AV922439 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags18d09 3', mRNA sequence
Length = 633
Score = 127 bits (273), Expect = 2e-029
Identities = 45/83 (54%), Positives = 64/83 (77%)
Frame = +1 / -1
Query: 4 HPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGXX 183
+P+HLHG D ++LA+G G +DA D A++N+ DPP+RNTV VP+ GWAV+RFV NPG
Sbjct: 420 NPMHLHGQDMFVLAQGLGRYDAEKDVATYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVW 241
Query: 184 LMHCHLDVHITWGLAMAFLVEDG 252
+HCH + H + G+A+AF+VE+G
Sbjct: 240 FLHCHFENHSSGGMAVAFVVENG 172
>gb|AV930978.1|AV930978 AV930978 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd18b14 3', mRNA sequence
Length = 742
Score = 127 bits (273), Expect = 2e-029
Identities = 45/83 (54%), Positives = 64/83 (77%)
Frame = +1 / -2
Query: 4 HPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGXX 183
+P+HLHG D ++LA+G G +DA D A++N+ DPP+RNTV VP+ GWAV+RFV NPG
Sbjct: 525 NPMHLHGQDMFVLAQGLGRYDAEKDVATYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVW 346
Query: 184 LMHCHLDVHITWGLAMAFLVEDG 252
+HCH + H + G+A+AF+VE+G
Sbjct: 345 FLHCHFENHSSGGMAVAFVVENG 277
>gb|AJ434805.1|AJ434805 AJ434805 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200063E08F1, mRNA sequence
Length = 505
Score = 127 bits (273), Expect = 2e-029
Identities = 45/83 (54%), Positives = 64/83 (77%)
Frame = +1 / +2
Query: 4 HPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGXX 183
+P+HLHG D ++LA+G G +DA D A++N+ DPP+RNTV VP+ GWAV+RFV NPG
Sbjct: 41 NPMHLHGQDMFVLAQGLGRYDAEKDVATYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVW 220
Query: 184 LMHCHLDVHITWGLAMAFLVEDG 252
+HCH + H + G+A+AF+VE+G
Sbjct: 221 FLHCHFENHSSGGMAVAFVVENG 289
>gb|BJ462471.1|BJ462471 BJ462471 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags28j06 5', mRNA sequence
Length = 582
Score = 127 bits (273), Expect = 2e-029
Identities = 45/83 (54%), Positives = 64/83 (77%)
Frame = +1 / +1
Query: 4 HPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGXX 183
+P+HLHG D ++LA+G G +DA D A++N+ DPP+RNTV VP+ GWAV+RFV NPG
Sbjct: 313 NPMHLHGQDMFVLAQGLGRYDAEKDVATYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVW 492
Query: 184 LMHCHLDVHITWGLAMAFLVEDG 252
+HCH + H + G+A+AF+VE+G
Sbjct: 493 FLHCHFENHSSGGMAVAFVVENG 561
>gb|BJ464713.1|BJ464713 BJ464713 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags37c22 5', mRNA sequence
Length = 597
Score = 127 bits (273), Expect = 2e-029
Identities = 45/83 (54%), Positives = 64/83 (77%)
Frame = +1 / +3
Query: 4 HPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGXX 183
+P+HLHG D ++LA+G G +DA D A++N+ DPP+RNTV VP+ GWAV+RFV NPG
Sbjct: 246 NPMHLHGQDMFVLAQGLGRYDAEKDVATYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVW 425
Query: 184 LMHCHLDVHITWGLAMAFLVEDG 252
+HCH + H + G+A+AF+VE+G
Sbjct: 426 FLHCHFENHSSGGMAVAFVVENG 494
>gb|BJ466235.1|BJ466235 BJ466235 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags31e14 3', mRNA sequence
Length = 727
Score = 127 bits (273), Expect = 2e-029
Identities = 45/83 (54%), Positives = 64/83 (77%)
Frame = +1 / -1
Query: 4 HPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGXX 183
+P+HLHG D ++LA+G G +DA D A++N+ DPP+RNTV VP+ GWAV+RFV NPG
Sbjct: 553 NPMHLHGQDMFVLAQGLGRYDAEKDVATYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVW 374
Query: 184 LMHCHLDVHITWGLAMAFLVEDG 252
+HCH + H + G+A+AF+VE+G
Sbjct: 373 FLHCHFENHSSGGMAVAFVVENG 305
>gb|BJ466891.1|BJ466891 BJ466891 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags34n08 3', mRNA sequence
Length = 637
Score = 127 bits (273), Expect = 2e-029
Identities = 45/83 (54%), Positives = 64/83 (77%)
Frame = +1 / -1
Query: 4 HPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGXX 183
+P+HLHG D ++LA+G G +DA D A++N+ DPP+RNTV VP+ GWAV+RFV NPG
Sbjct: 553 NPMHLHGQDMFVLAQGLGRYDAEKDVATYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVW 374
Query: 184 LMHCHLDVHITWGLAMAFLVEDG 252
+HCH + H + G+A+AF+VE+G
Sbjct: 373 FLHCHFENHSSGGMAVAFVVENG 305
>gb|BJ467149.1|BJ467149 BJ467149 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags36g04 3', mRNA sequence
Length = 463
Score = 127 bits (273), Expect = 2e-029
Identities = 45/83 (54%), Positives = 64/83 (77%)
Frame = +1 / -3
Query: 4 HPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGXX 183
+P+HLHG D ++LA+G G +DA D A++N+ DPP+RNTV VP+ GWAV+RFV NPG
Sbjct: 380 NPMHLHGQDMFVLAQGLGRYDAEKDVATYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVW 201
Query: 184 LMHCHLDVHITWGLAMAFLVEDG 252
+HCH + H + G+A+AF+VE+G
Sbjct: 200 FLHCHFENHSSGGMAVAFVVENG 132
>gb|BJ468002.1|BJ468002 BJ468002 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags30l02 3', mRNA sequence
Length = 641
Score = 127 bits (273), Expect = 2e-029
Identities = 45/83 (54%), Positives = 64/83 (77%)
Frame = +1 / -1
Query: 4 HPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGXX 183
+P+HLHG D ++LA+G G +DA D A++N+ DPP+RNTV VP+ GWAV+RFV NPG
Sbjct: 533 NPMHLHGQDMFVLAQGLGRYDAEKDVATYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVW 354
Query: 184 LMHCHLDVHITWGLAMAFLVEDG 252
+HCH + H + G+A+AF+VE+G
Sbjct: 353 FLHCHFENHSSGGMAVAFVVENG 285
>gb|BJ468113.1|BJ468113 BJ468113 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags37c22 3', mRNA sequence
Length = 639
Score = 127 bits (273), Expect = 2e-029
Identities = 45/83 (54%), Positives = 64/83 (77%)
Frame = +1 / -2
Query: 4 HPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGXX 183
+P+HLHG D ++LA+G G +DA D A++N+ DPP+RNTV VP+ GWAV+RFV NPG
Sbjct: 554 NPMHLHGQDMFVLAQGLGRYDAEKDVATYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVW 375
Query: 184 LMHCHLDVHITWGLAMAFLVEDG 252
+HCH + H + G+A+AF+VE+G
Sbjct: 374 FLHCHFENHSSGGMAVAFVVENG 306
>gb|BJ468402.1|BJ468402 BJ468402 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags38k12 3', mRNA sequence
Length = 719
Score = 127 bits (273), Expect = 2e-029
Identities = 45/83 (54%), Positives = 64/83 (77%)
Frame = +1 / -1
Query: 4 HPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGXX 183
+P+HLHG D ++LA+G G +DA D A++N+ DPP+RNTV VP+ GWAV+RFV NPG
Sbjct: 554 NPMHLHGQDMFVLAQGLGRYDAEKDVATYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVW 375
Query: 184 LMHCHLDVHITWGLAMAFLVEDG 252
+HCH + H + G+A+AF+VE+G
Sbjct: 374 FLHCHFENHSSGGMAVAFVVENG 306
>gb|BJ468540.1|BJ468540 BJ468540 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags39e03 3', mRNA sequence
Length = 542
Score = 127 bits (273), Expect = 2e-029
Identities = 45/83 (54%), Positives = 64/83 (77%)
Frame = +1 / -3
Query: 4 HPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGXX 183
+P+HLHG D ++LA+G G +DA D A++N+ DPP+RNTV VP+ GWAV+RFV NPG
Sbjct: 528 NPMHLHGQDMFVLAQGLGRYDAEKDVATYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVW 349
Query: 184 LMHCHLDVHITWGLAMAFLVEDG 252
+HCH + H + G+A+AF+VE+G
Sbjct: 348 FLHCHFENHSSGGMAVAFVVENG 280
>gb|CA000217.1|CA000217 HS09L06u HS Hordeum vulgare subsp. vulgare cDNA clone HS09L06
3-PRIME, mRNA sequence
Length = 552
Score = 127 bits (273), Expect = 2e-029
Identities = 45/83 (54%), Positives = 64/83 (77%)
Frame = +1 / -2
Query: 4 HPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGXX 183
+P+HLHG D ++LA+G G +DA D A++N+ DPP+RNTV VP+ GWAV+RFV NPG
Sbjct: 494 NPMHLHGQDMFVLAQGLGRYDAEKDVATYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVW 315
Query: 184 LMHCHLDVHITWGLAMAFLVEDG 252
+HCH + H + G+A+AF+VE+G
Sbjct: 314 FLHCHFENHSSGGMAVAFVVENG 246
>gb|CA000352.1|CA000352 HS08P05u HS Hordeum vulgare subsp. vulgare cDNA clone HS08P05
3-PRIME, mRNA sequence
Length = 541
Score = 127 bits (273), Expect = 2e-029
Identities = 45/83 (54%), Positives = 64/83 (77%)
Frame = +1 / -1
Query: 4 HPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGXX 183
+P+HLHG D ++LA+G G +DA D A++N+ DPP+RNTV VP+ GWAV+RFV NPG
Sbjct: 448 NPMHLHGQDMFVLAQGLGRYDAEKDVATYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVW 269
Query: 184 LMHCHLDVHITWGLAMAFLVEDG 252
+HCH + H + G+A+AF+VE+G
Sbjct: 268 FLHCHFENHSSGGMAVAFVVENG 200
>gb|CA004365.1|CA004365 HS17F22r HS Hordeum vulgare subsp. vulgare cDNA clone HS17F22
5-PRIME, mRNA sequence
Length = 410
Score = 127 bits (273), Expect = 2e-029
Identities = 45/83 (54%), Positives = 64/83 (77%)
Frame = +1 / +3
Query: 4 HPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGXX 183
+P+HLHG D ++LA+G G +DA D A++N+ DPP+RNTV VP+ GWAV+RFV NPG
Sbjct: 147 NPMHLHGQDMFVLAQGLGRYDAEKDVATYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVW 326
Query: 184 LMHCHLDVHITWGLAMAFLVEDG 252
+HCH + H + G+A+AF+VE+G
Sbjct: 327 FLHCHFENHSSGGMAVAFVVENG 395
>gb|CA004933.1|CA004933 HU12M11u HU Hordeum vulgare subsp. vulgare cDNA clone HU12M11
3-PRIME, mRNA sequence
Length = 503
Score = 127 bits (273), Expect = 2e-029
Identities = 45/83 (54%), Positives = 64/83 (77%)
Frame = +1 / -2
Query: 4 HPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGXX 183
+P+HLHG D ++LA+G G +DA D A++N+ DPP+RNTV VP+ GWAV+RFV NPG
Sbjct: 415 NPMHLHGQDMFVLAQGLGRYDAEKDVATYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVW 236
Query: 184 LMHCHLDVHITWGLAMAFLVEDG 252
+HCH + H + G+A+AF+VE+G
Sbjct: 235 FLHCHFENHSSGGMAVAFVVENG 167
>gb|CA006323.1|CA006323 HU14F11u HU Hordeum vulgare subsp. vulgare cDNA clone HU14F11
3-PRIME, mRNA sequence
Length = 495
Score = 127 bits (273), Expect = 2e-029
Identities = 45/83 (54%), Positives = 64/83 (77%)
Frame = +1 / -3
Query: 4 HPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGXX 183
+P+HLHG D ++LA+G G +DA D A++N+ DPP+RNTV VP+ GWAV+RFV NPG
Sbjct: 415 NPMHLHGQDMFVLAQGLGRYDAEKDVATYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVW 236
Query: 184 LMHCHLDVHITWGLAMAFLVEDG 252
+HCH + H + G+A+AF+VE+G
Sbjct: 235 FLHCHFENHSSGGMAVAFVVENG 167
>gb|CA006380.1|CA006380 HU14H21u HU Hordeum vulgare subsp. vulgare cDNA clone HU14H21
3-PRIME, mRNA sequence
Length = 560
Score = 127 bits (273), Expect = 2e-029
Identities = 45/83 (54%), Positives = 64/83 (77%)
Frame = +1 / -1
Query: 4 HPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGXX 183
+P+HLHG D ++LA+G G +DA D A++N+ DPP+RNTV VP+ GWAV+RFV NPG
Sbjct: 452 NPMHLHGQDMFVLAQGLGRYDAEKDVATYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVW 273
Query: 184 LMHCHLDVHITWGLAMAFLVEDG 252
+HCH + H + G+A+AF+VE+G
Sbjct: 272 FLHCHFENHSSGGMAVAFVVENG 204
>gb|CA011357.1|CA011357 HT06C03u HT Hordeum vulgare subsp. vulgare cDNA clone HT06C03
3-PRIME, mRNA sequence
Length = 463
Score = 127 bits (273), Expect = 2e-029
Identities = 45/83 (54%), Positives = 64/83 (77%)
Frame = +1 / -1
Query: 4 HPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGXX 183
+P+HLHG D ++LA+G G +DA D A++N+ DPP+RNTV VP+ GWAV+RFV NPG
Sbjct: 418 NPMHLHGQDMFVLAQGLGRYDAEKDVATYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVW 239
Query: 184 LMHCHLDVHITWGLAMAFLVEDG 252
+HCH + H + G+A+AF+VE+G
Sbjct: 238 FLHCHFENHSSGGMAVAFVVENG 170
>gb|CA016005.1|CA016005 HV11A05u HV Hordeum vulgare subsp. vulgare cDNA clone HV11A05
3-PRIME, mRNA sequence
Length = 555
Score = 127 bits (273), Expect = 2e-029
Identities = 45/83 (54%), Positives = 64/83 (77%)
Frame = +1 / -3
Query: 4 HPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGXX 183
+P+HLHG D ++LA+G G +DA D A++N+ DPP+RNTV VP+ GWAV+RFV NPG
Sbjct: 547 NPMHLHGQDMFVLAQGLGRYDAEKDVATYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVW 368
Query: 184 LMHCHLDVHITWGLAMAFLVEDG 252
+HCH + H + G+A+AF+VE+G
Sbjct: 367 FLHCHFENHSSGGMAVAFVVENG 299
>gb|CA017123.1|CA017123 HV14L14u HV Hordeum vulgare subsp. vulgare cDNA clone HV14L14
3-PRIME, mRNA sequence
Length = 516
Score = 127 bits (273), Expect = 2e-029
Identities = 45/83 (54%), Positives = 64/83 (77%)
Frame = +1 / -2
Query: 4 HPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGXX 183
+P+HLHG D ++LA+G G +DA D A++N+ DPP+RNTV VP+ GWAV+RFV NPG
Sbjct: 509 NPMHLHGQDMFVLAQGLGRYDAEKDVATYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVW 330
Query: 184 LMHCHLDVHITWGLAMAFLVEDG 252
+HCH + H + G+A+AF+VE+G
Sbjct: 329 FLHCHFENHSSGGMAVAFVVENG 261
>gb|CA018696.1|CA018696 HV09G03r HV Hordeum vulgare subsp. vulgare cDNA clone HV09G03
5-PRIME, mRNA sequence
Length = 663
Score = 127 bits (273), Expect = 2e-029
Identities = 45/83 (54%), Positives = 64/83 (77%)
Frame = +1 / +1
Query: 4 HPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGXX 183
+P+HLHG D ++LA+G G +DA D A++N+ DPP+RNTV VP+ GWAV+RFV NPG
Sbjct: 319 NPMHLHGQDMFVLAQGLGRYDAEKDVATYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVW 498
Query: 184 LMHCHLDVHITWGLAMAFLVEDG 252
+HCH + H + G+A+AF+VE+G
Sbjct: 499 FLHCHFENHSSGGMAVAFVVENG 567
>gb|BF256602.3|BF256602 HVSMEf0010H12f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0010H12f, mRNA sequence
Length = 667
Score = 98.2 bits (208), Expect(2) = 2e-028
Identities = 38/77 (49%), Positives = 48/77 (62%)
Frame = +1 / +1
Query: 76 DTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGXXLMHCHLDVHITWGLAMAFLVEDGV 255
+T+++N+ DP RNT+ VP GWAVIRFVA+NPG HCHLD H+ GL M F VE+G
Sbjct: 136 NTSAYNLVDPVARNTIAVPTGGWAVIRFVANNPGMWFFHCHLDAHVPMGLGMVFAVENGT 315
Query: 256 GEMQSLEAXXXDXXIC* 306
L D +C*
Sbjct: 316 TADSMLPPPPADLPVC* 366
Score = 46.4 bits (95), Expect(2) = 2e-028
Identities = 14/21 (66%), Positives = 19/21 (90%)
Frame = +1 / +1
Query: 1 NHPIHLHGYDFYILAEGFGNF 63
NHPIHLHG++F++LA+G G F
Sbjct: 64 NHPIHLHGFNFFVLAQGLGTF 126
>gb|AV922440.1|AV922440 AV922440 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags18d10 3', mRNA sequence
Length = 455
Score = 124 bits (266), Expect = 2e-028
Identities = 44/83 (53%), Positives = 62/83 (74%)
Frame = +1 / -2
Query: 4 HPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGXX 183
+P+HLHG D ++LA+G G +D D A++N DPP+RNTV VP+ GWAV+RFV NPG
Sbjct: 394 NPMHLHGQDMFVLAQGLGRYDTEKDVATYNXVDPPVRNTVLVPLFGWAVVRFVTKNPGVW 215
Query: 184 LMHCHLDVHITWGLAMAFLVEDG 252
+HCH + H + G+A+AF+VE+G
Sbjct: 214 FLHCHFENHSSGGMAVAFVVENG 146
>gb|BJ467932.1|BJ467932 BJ467932 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags30f23 3', mRNA sequence
Length = 572
Score = 124 bits (266), Expect = 2e-028
Identities = 44/83 (53%), Positives = 63/83 (75%)
Frame = +1 / -2
Query: 4 HPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGXX 183
+P+HLHG ++LA+G G +DA D A++N+ DPP+RNTV VP+ GWAV+RFV NPG
Sbjct: 556 NPMHLHGQXMFVLAQGLGRYDAEKDVATYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVW 377
Query: 184 LMHCHLDVHITWGLAMAFLVEDG 252
+HCH + H + G+A+AF+VE+G
Sbjct: 376 FLHCHFENHSSGGMAVAFVVENG 308
>gb|AL500002.1|AL500002 AL500002 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK04H05r 3', mRNA sequence
Length = 597
Score = 122 bits (260), Expect = 1e-027
Identities = 44/82 (53%), Positives = 61/82 (74%)
Frame = +1 / -1
Query: 7 PIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGXXL 186
P LHG D ++LA+G G +DA D A++N+ DPP+RNTV VP+ GWAV+RFV NPG
Sbjct: 468 PCTLHGQDMFVLAQGLGRYDAEKDVATYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVWF 289
Query: 187 MHCHLDVHITWGLAMAFLVEDG 252
+HCH + H + G+A+AF+VE+G
Sbjct: 288 LHCHFENHSSGGMAVAFVVENG 223
>gb|BF255910.2|BF255910 HVSMEf0008C22f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0008C22f, mRNA sequence
Length = 868
Score = 120 bits (257), Expect = 3e-027
Identities = 43/83 (51%), Positives = 62/83 (74%)
Frame = +1 / -2
Query: 4 HPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGXX 183
+P+HLHG D ++LA+G G +DA ++N+ DPP+RNTV VP+ GWAV+RFV NPG
Sbjct: 540 NPMHLHGQDMFVLAQGLG*YDAEKHVRTYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVW 361
Query: 184 LMHCHLDVHITWGLAMAFLVEDG 252
+HCH + H + G+A+AF+VE+G
Sbjct: 360 FLHCHFENHSSGGMAVAFVVENG 292
>gb|BU990324.1|BU990324 HF24L04r HF Hordeum vulgare subsp. vulgare cDNA clone HF24L04
5-PRIME, mRNA sequence
Length = 599
Score = 120 bits (256), Expect = 5e-027
Identities = 42/78 (53%), Positives = 59/78 (75%)
Frame = +1 / +3
Query: 4 HPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGXX 183
+P+HLHG D ++LA+G G +DA D A++N+ DPP+RNTV VP+ GWAV+RFV NPG
Sbjct: 366 NPMHLHGQDMFVLAQGLGRYDAEKDVATYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVW 545
Query: 184 LMHCHLDVHITWGLAMAF 237
+HCH + H + G+A+AF
Sbjct: 546 FLHCHFENHSSGGMAVAF 599
>gb|BM370831.2|BM370831 EBro04_SQ002_G23_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ002_G23 5', mRNA sequence
Length = 657
Score = 86.3 bits (182), Expect(2) = 5e-026
Identities = 34/57 (59%), Positives = 42/57 (73%)
Frame = +1 / +1
Query: 82 ASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGXXLMHCHLDVHITWGLAMAFLVEDG 252
A++N+ +P +RNTV VP GW VIRFVA+NPG MHCHLD H+ GLAM F V +G
Sbjct: 160 ATYNLVNPRVRNTVIVPGGGWTVIRFVANNPGMWFMHCHLDAHLPLGLAMVFEVLNG 330
Score = 50.1 bits (103), Expect(2) = 5e-026
Identities = 16/25 (64%), Positives = 21/25 (84%)
Frame = +1 / +1
Query: 1 NHPIHLHGYDFYILAEGFGNFDAXA 75
NHPIHLHG++F++LA+G G FD A
Sbjct: 88 NHPIHLHGFNFFVLAQGLGTFDPNA 162
>gb|BE214373.1|BE214373 HV_CEb0003E06f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0003E06f, mRNA sequence
Length = 709
Score = 76.7 bits (161), Expect(2) = 2e-025
Identities = 27/49 (55%), Positives = 36/49 (73%)
Frame = +1 / -2
Query: 1 NHPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWA 147
++P+HLHGYDF++LA G GN++ AD FN +P +RNTV VP GWA
Sbjct: 615 SNPMHLHGYDFFVLATGLGNYNPKADPDKFNYHNPQLRNTVQVPRTGWA 469
Score = 57.9 bits (120), Expect(2) = 2e-025
Identities = 20/35 (57%), Positives = 26/35 (74%)
Frame = +1 / -3
Query: 148 VIRFVADNPGXXLMHCHLDVHITWGLAMAFLVEDG 252
V+RFV DNPG +HCH + HI G+A AF+VE+G
Sbjct: 467 VVRFVTDNPGMWYLHCHFEFHIIMGMATAFIVENG 363
>gb|BJ463756.1|BJ463756 BJ463756 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags30f23 5', mRNA sequence
Length = 678
Score = 78.5 bits (165), Expect(2) = 6e-025
Identities = 27/48 (56%), Positives = 38/48 (79%)
Frame = +1 / +3
Query: 4 HPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWA 147
+P+HLHG D ++LA+G G +DA D A++N+ DPP+RNTV VP+ GWA
Sbjct: 306 NPMHLHGQDMFVLAQGLGRYDAEKDVATYNLVDPPVRNTVLVPLFGWA 449
Score = 54.2 bits (112), Expect(2) = 6e-025
Identities = 19/39 (48%), Positives = 28/39 (71%)
Frame = +1 / +1
Query: 136 NGWAVIRFVADNPGXXLMHCHLDVHITWGLAMAFLVEDG 252
+G V+RFV NPG +HCH + H + G+A+AF+VE+G
Sbjct: 439 SGGPVVRFVTKNPGVWFLHCHFENHSSGGMAVAFVVENG 555
>gb|CA015948.1|CA015948 HV11J19u HV Hordeum vulgare subsp. vulgare cDNA clone HV11J19
3-PRIME, mRNA sequence
Length = 426
Score = 112 bits (239), Expect = 1e-024
Identities = 40/75 (53%), Positives = 57/75 (76%)
Frame = +1 / -2
Query: 28 DFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGXXLMHCHLDV 207
D ++LA+G G +DA D A++N+ DPP+RNTV VP+ GWAV+RFV NPG +HCH +
Sbjct: 425 DMFVLAQGLGRYDAEKDVATYNLVDPPVRNTVLVPLFGWAVVRFVTKNPGVWFLHCHFEN 246
Query: 208 HITWGLAMAFLVEDG 252
H + G+A+AF+VE+G
Sbjct: 245 HSSGGMAVAFVVENG 201
>gb|BI958400.1|BI958400 HVSMEn0014M17f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0014M17f, mRNA sequence
Length = 677
Score = 111 bits (236), Expect = 3e-024
Identities = 36/68 (52%), Positives = 50/68 (73%)
Frame = +1 / +2
Query: 1 NHPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGX 180
+HP+H+HG++F+++ +GFGN+D D A +N+ DP RNTV VP GW +RF+ADNP
Sbjct: 473 SHPLHMHGFNFFVVGQGFGNYDPINDPAKYNLVDPVERNTVSVPTAGWVAVRFLADNPXV 652
Query: 181 XLMHCHLD 204
LMHCH D
Sbjct: 653 WLMHCHFD 676
>gb|AV913050.1|AV913050 AV913050 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags11j12 5', mRNA sequence
Length = 567
Score = 78.5 bits (165), Expect(2) = 4e-024
Identities = 27/48 (56%), Positives = 38/48 (79%)
Frame = +1 / +1
Query: 4 HPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWA 147
+P+HLHG D ++LA+G G +DA D A++N+ DPP+RNTV VP+ GWA
Sbjct: 322 NPMHLHGQDMFVLAQGLGRYDAEKDVATYNLVDPPVRNTVLVPLFGWA 465
Score = 51.0 bits (105), Expect(2) = 4e-024
Identities = 18/37 (48%), Positives = 26/37 (70%)
Frame = +1 / +2
Query: 136 NGWAVIRFVADNPGXXLMHCHLDVHITWGLAMAFLVE 246
+G V+RFV NPG +HCH + H + G+A+AF+VE
Sbjct: 455 SGGPVVRFVTKNPGVWFLHCHFENHSSGGMAVAFVVE 565
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 141,503,388
Number of Sequences: 312970
Number of extensions: 2073020
Number of successful extensions: 139441
Number of sequences better than 1.0e-020: 80
length of database: 58,378,179
effective HSP length: 49
effective length of database: 43,042,649
effective search space used: 3658625165
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)