TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAN24c09.yg.2.1
(425 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ465804.1|BQ465804 HU04L18r HU Hordeum vulgare subsp. v... 178 2e-044
gb|BQ469182.1|BQ469182 HM03K08r HM Hordeum vulgare subsp. v... 178 2e-044
gb|BU971759.1|BU971759 HB19J12r BC Hordeum vulgare subsp. v... 178 2e-044
gb|AV926207.1|AV926207 AV926207 K. Sato unpublished cDNA li... 166 4e-041
gb|AV926208.1|AV926208 AV926208 K. Sato unpublished cDNA li... 166 4e-041
gb|BU984513.1|BU984513 HF04C11r HF Hordeum vulgare subsp. v... 166 4e-041
gb|BU986849.1|BU986849 HF13B10r HF Hordeum vulgare subsp. v... 166 4e-041
gb|BU988138.1|BU988138 HF16M09r HF Hordeum vulgare subsp. v... 166 4e-041
gb|CA025257.1|CA025257 HZ51J24r HZ Hordeum vulgare subsp. v... 162 1e-039
gb|BQ468619.1|BQ468619 HM01M13T HM Hordeum vulgare subsp. v... 161 2e-039
gb|AV925770.1|AV925770 AV925770 K. Sato unpublished cDNA li... 160 4e-039
gb|BG414971.1|BG414971 HVSMEk0004I03f Hordeum vulgare testa... 158 1e-038
gb|AV914152.1|AV914152 AV914152 K. Sato unpublished cDNA li... 158 1e-038
gb|AV914933.1|AV914933 AV914933 K. Sato unpublished cDNA li... 158 1e-038
gb|BM816138.1|BM816138 HC109B12_T3.ab1 HC Hordeum vulgare s... 158 1e-038
gb|CA012990.1|CA012990 HT07B01r HT Hordeum vulgare subsp. v... 158 1e-038
gb|BI779022.2|BI779022 EBro01_SQ002_J19_R root, 3 week, hyd... 158 1e-038
gb|BM816139.1|BM816139 HC105G09_T3.ab1 HC Hordeum vulgare s... 156 5e-038
gb|BQ463573.1|BQ463573 HI05L24r HI Hordeum vulgare subsp. v... 155 9e-038
gb|AV925215.1|AV925215 AV925215 K. Sato unpublished cDNA li... 153 6e-037
gb|AV923333.1|AV923333 AV923333 K. Sato unpublished cDNA li... 149 1e-035
gb|BF258638.2|BF258638 HVSMEf0016E13f Hordeum vulgare seedl... 146 5e-035
gb|BF064711.2|BF064711 HV_CEb0017G02f Hordeum vulgare seedl... 146 5e-035
gb|BJ453328.1|BJ453328 BJ453328 K. Sato unpublished cDNA li... 146 5e-035
gb|BQ467842.1|BQ467842 HR01B16r HR Hordeum vulgare subsp. v... 146 5e-035
gb|BM376392.2|BM376392 EBem05_SQ002_B14_R embryo, 14 DPA, n... 146 5e-035
gb|BU972673.1|BU972673 HB22G06r BC Hordeum vulgare subsp. v... 146 5e-035
gb|BU985115.1|BU985115 HF06C19r HF Hordeum vulgare subsp. v... 146 5e-035
gb|BF259974.3|BF259974 HVSMEf0020M07f Hordeum vulgare seedl... 145 1e-034
gb|AL503512.1|AL503512 AL503512 Hordeum vulgare Barke roots... 142 9e-034
gb|CA030609.1|CA030609 HX07J05r HX Hordeum vulgare subsp. v... 142 9e-034
gb|CA030647.1|CA030647 HX07L05r HX Hordeum vulgare subsp. v... 142 9e-034
gb|BG417165.1|BG417165 HVSMEk0016J06f Hordeum vulgare testa... 141 2e-033
gb|AV932043.1|AV932043 AV932043 K. Sato unpublished cDNA li... 132 1e-030
gb|BI776485.2|BI776485 EBpi05_SQ001_J01_R pistil, 8 DPA, no... 121 2e-027
gb|CB876338.1|CB876338 HX10P19w HX Hordeum vulgare subsp. v... 121 2e-027
gb|AV927219.1|AV927219 AV927219 K. Sato unpublished cDNA li... 120 5e-027
gb|CA025840.1|CA025840 HZ53E19r HZ Hordeum vulgare subsp. v... 120 5e-027
gb|BQ739972.1|BQ739972 HB107G12 HB Hordeum vulgare subsp. v... 112 1e-024
gb|BU990492.1|BU990492 HF25D10r HF Hordeum vulgare subsp. v... 112 1e-024
gb|AV931092.1|AV931092 AV931092 K. Sato unpublished cDNA li... 110 4e-024
gb|BM817226.1|BM817226 HC109A10_T3.ab1 HC Hordeum vulgare s... 106 7e-023
gb|AV931093.1|AV931093 AV931093 K. Sato unpublished cDNA li... 105 1e-022
gb|BU967242.1|BU967242 HB03K11r BC Hordeum vulgare subsp. v... 105 1e-022
gb|CB860194.1|CB860194 HI12P13w HI Hordeum vulgare subsp. v... 105 1e-022
gb|BG365821.2|BG365821 HVSMEi0004F18f Hordeum vulgare 20 DA... 105 2e-022
>gb|BQ465804.1|BQ465804 HU04L18r HU Hordeum vulgare subsp. vulgare cDNA clone HU04L18
5-PRIME, mRNA sequence
Length = 644
Score = 178 bits (383), Expect = 2e-044
Identities = 71/102 (69%), Positives = 83/102 (81%)
Frame = +1 / +1
Query: 100 FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWV 279
+C L + L F +L+N+AS+W+MSLFICIFAT IL MRW+ V +DDWWRNEQFWV
Sbjct: 169 YCTLPAICLLTGKFITPELSNLASIWYMSLFICIFATGILEMRWARVAVDDWWRNEQFWV 348
Query: 280 IGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDDDEFSELY 405
IGGVS+HLFAVFQGLL VIAGVDTS T T+K GDD+EFSELY
Sbjct: 349 IGGVSAHLFAVFQGLLKVIAGVDTSFTVTTKAGDDEEFSELY 474
Score = 110 bits (234), Expect(2) = 5e-028
Identities = 51/84 (60%), Positives = 55/84 (65%)
Frame = -1 / -1
Query: 404 YXXXXXXXXXPFDVXVXLVSTPAMTXRSP*NTAKRCEDTPPMTQNCSFLHQSSIPTPLHL 225
Y F V V LVSTPA+T RSP NTA R +TPPMTQNCSFLHQSS T HL
Sbjct: 473 YSSENSSSSPAFVVTVKLVSTPAITLRSPWNTANRWAETPPMTQNCSFLHQSSTATRAHL 294
Query: 224 IXRMLVAKMQIKSDMNHRLATLFS 153
I R+ VAKMQ+KSDM LA L S
Sbjct: 293 ISRIPVAKMQMKSDMYQILARLLS 222
Score = 33.1 bits (66), Expect(2) = 5e-028
Identities = 12/16 (75%), Positives = 15/16 (93%)
Frame = -1 / -1
Query: 50 TSGVINFPVNKQMAGN 3
+SGV+N PVNKQ+AGN
Sbjct: 224 SSGVMNLPVNKQIAGN 177
>gb|BQ469182.1|BQ469182 HM03K08r HM Hordeum vulgare subsp. vulgare cDNA clone HM03K08
5-PRIME, mRNA sequence
Length = 660
Score = 178 bits (383), Expect = 2e-044
Identities = 71/102 (69%), Positives = 83/102 (81%)
Frame = +1 / +2
Query: 100 FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWV 279
+C L + L F +L+N+AS+W+MSLFICIFAT IL MRW+ V +DDWWRNEQFWV
Sbjct: 194 YCTLPAICLLTGKFITPELSNLASIWYMSLFICIFATGILEMRWARVAVDDWWRNEQFWV 373
Query: 280 IGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDDDEFSELY 405
IGGVS+HLFAVFQGLL VIAGVDTS T T+K GDD+EFSELY
Sbjct: 374 IGGVSAHLFAVFQGLLKVIAGVDTSFTVTTKAGDDEEFSELY 499
Score = 110 bits (234), Expect(2) = 5e-028
Identities = 51/84 (60%), Positives = 55/84 (65%)
Frame = -1 / -1
Query: 404 YXXXXXXXXXPFDVXVXLVSTPAMTXRSP*NTAKRCEDTPPMTQNCSFLHQSSIPTPLHL 225
Y F V V LVSTPA+T RSP NTA R +TPPMTQNCSFLHQSS T HL
Sbjct: 498 YSSENSSSSPAFVVTVKLVSTPAITLRSPWNTANRWAETPPMTQNCSFLHQSSTATRAHL 319
Query: 224 IXRMLVAKMQIKSDMNHRLATLFS 153
I R+ VAKMQ+KSDM LA L S
Sbjct: 318 ISRIPVAKMQMKSDMYQILARLLS 247
Score = 33.1 bits (66), Expect(2) = 5e-028
Identities = 12/16 (75%), Positives = 15/16 (93%)
Frame = -1 / -1
Query: 50 TSGVINFPVNKQMAGN 3
+SGV+N PVNKQ+AGN
Sbjct: 249 SSGVMNLPVNKQIAGN 202
>gb|BU971759.1|BU971759 HB19J12r BC Hordeum vulgare subsp. vulgare cDNA clone HB19J12
5-PRIME, mRNA sequence
Length = 649
Score = 178 bits (383), Expect = 2e-044
Identities = 71/102 (69%), Positives = 83/102 (81%)
Frame = +1 / +1
Query: 100 FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWV 279
+C L + L F +L+N+AS+W+MSLFICIFAT IL MRW+ V +DDWWRNEQFWV
Sbjct: 61 YCTLPAICLLTGKFITPELSNLASIWYMSLFICIFATGILEMRWARVAVDDWWRNEQFWV 240
Query: 280 IGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDDDEFSELY 405
IGGVS+HLFAVFQGLL VIAGVDTS T T+K GDD+EFSELY
Sbjct: 241 IGGVSAHLFAVFQGLLKVIAGVDTSFTVTTKAGDDEEFSELY 366
Score = 110 bits (234), Expect(2) = 5e-028
Identities = 51/84 (60%), Positives = 55/84 (65%)
Frame = -1 / -3
Query: 404 YXXXXXXXXXPFDVXVXLVSTPAMTXRSP*NTAKRCEDTPPMTQNCSFLHQSSIPTPLHL 225
Y F V V LVSTPA+T RSP NTA R +TPPMTQNCSFLHQSS T HL
Sbjct: 365 YSSENSSSSPAFVVTVKLVSTPAITLRSPWNTANRWAETPPMTQNCSFLHQSSTATRAHL 186
Query: 224 IXRMLVAKMQIKSDMNHRLATLFS 153
I R+ VAKMQ+KSDM LA L S
Sbjct: 185 ISRIPVAKMQMKSDMYQILARLLS 114
Score = 33.1 bits (66), Expect(2) = 5e-028
Identities = 12/16 (75%), Positives = 15/16 (93%)
Frame = -1 / -3
Query: 50 TSGVINFPVNKQMAGN 3
+SGV+N PVNKQ+AGN
Sbjct: 116 SSGVMNLPVNKQIAGN 69
>gb|AV926207.1|AV926207 AV926207 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd18i05 5', mRNA sequence
Length = 668
Score = 166 bits (358), Expect = 4e-041
Identities = 65/96 (67%), Positives = 79/96 (82%)
Frame = +1 / +3
Query: 100 FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWV 279
+C+L V L F + Q++N+AS+WF+SLFI IFAT IL MRWSGVGID+WWRNEQFWV
Sbjct: 219 YCILPAVCLLTGKFIIPQISNIASIWFISLFISIFATGILEMRWSGVGIDEWWRNEQFWV 398
Query: 280 IGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDDD 387
IGG+S+HLFAVFQGLL V+AG+DTS T TSK D+D
Sbjct: 399 IGGISAHLFAVFQGLLKVLAGIDTSFTVTSKASDED 506
Score = 115 bits (245), Expect = 2e-025
Identities = 51/90 (56%), Positives = 60/90 (66%)
Frame = -1 / -2
Query: 371 FDVXVXLVSTPAMTXRSP*NTAKRCEDTPPMTQNCSFLHQSSIPTPLHLIXRMLVAKMQI 192
F+V V LVS PA T R P TA RC + PPMTQNCSFLH SS+PTPLHLI R+ VAK++I
Sbjct: 490 FEVTVKLVSMPASTFRRPWKTANRCAEIPPMTQNCSFLHHSSMPTPLHLISRIPVAKIEI 311
Query: 191 KSDMNHRLATLFSCSR*NSEHKVQTFHNKQ 102
K ++N LA L C N + QT N Q
Sbjct: 310 KREINQILAMLLICGMMNFPVRRQTAGNMQ 221
>gb|AV926208.1|AV926208 AV926208 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd18i06 5', mRNA sequence
Length = 586
Score = 166 bits (358), Expect = 4e-041
Identities = 65/96 (67%), Positives = 79/96 (82%)
Frame = +1 / +3
Query: 100 FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWV 279
+C+L V L F + Q++N+AS+WF+SLFI IFAT IL MRWSGVGID+WWRNEQFWV
Sbjct: 213 YCILPAVCLLTGKFIIPQISNIASIWFISLFISIFATGILEMRWSGVGIDEWWRNEQFWV 392
Query: 280 IGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDDD 387
IGG+S+HLFAVFQGLL V+AG+DTS T TSK D+D
Sbjct: 393 IGGISAHLFAVFQGLLKVLAGIDTSFTVTSKASDED 500
Score = 115 bits (245), Expect = 2e-025
Identities = 51/90 (56%), Positives = 60/90 (66%)
Frame = -1 / -1
Query: 371 FDVXVXLVSTPAMTXRSP*NTAKRCEDTPPMTQNCSFLHQSSIPTPLHLIXRMLVAKMQI 192
F+V V LVS PA T R P TA RC + PPMTQNCSFLH SS+PTPLHLI R+ VAK++I
Sbjct: 484 FEVTVKLVSMPASTFRRPWKTANRCAEIPPMTQNCSFLHHSSMPTPLHLISRIPVAKIEI 305
Query: 191 KSDMNHRLATLFSCSR*NSEHKVQTFHNKQ 102
K ++N LA L C N + QT N Q
Sbjct: 304 KREINQILAMLLICGMMNFPVRRQTAGNMQ 215
>gb|BU984513.1|BU984513 HF04C11r HF Hordeum vulgare subsp. vulgare cDNA clone HF04C11
5-PRIME, mRNA sequence
Length = 629
Score = 166 bits (358), Expect = 4e-041
Identities = 65/96 (67%), Positives = 79/96 (82%)
Frame = +1 / +1
Query: 100 FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWV 279
+C+L V L F + Q++N+AS+WF+SLFI IFAT IL MRWSGVGID+WWRNEQFWV
Sbjct: 286 YCILPAVCLLTGKFIIPQISNIASIWFISLFISIFATGILEMRWSGVGIDEWWRNEQFWV 465
Query: 280 IGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDDD 387
IGG+S+HLFAVFQGLL V+AG+DTS T TSK D+D
Sbjct: 466 IGGISAHLFAVFQGLLKVLAGIDTSFTVTSKASDED 573
Score = 115 bits (245), Expect = 2e-025
Identities = 51/90 (56%), Positives = 60/90 (66%)
Frame = -1 / -1
Query: 371 FDVXVXLVSTPAMTXRSP*NTAKRCEDTPPMTQNCSFLHQSSIPTPLHLIXRMLVAKMQI 192
F+V V LVS PA T R P TA RC + PPMTQNCSFLH SS+PTPLHLI R+ VAK++I
Sbjct: 557 FEVTVKLVSMPASTFRRPWKTANRCAEIPPMTQNCSFLHHSSMPTPLHLISRIPVAKIEI 378
Query: 191 KSDMNHRLATLFSCSR*NSEHKVQTFHNKQ 102
K ++N LA L C N + QT N Q
Sbjct: 377 KREINQILAMLLICGMMNFPVRRQTAGNMQ 288
>gb|BU986849.1|BU986849 HF13B10r HF Hordeum vulgare subsp. vulgare cDNA clone HF13B10
5-PRIME, mRNA sequence
Length = 622
Score = 166 bits (358), Expect = 4e-041
Identities = 65/96 (67%), Positives = 79/96 (82%)
Frame = +1 / +3
Query: 100 FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWV 279
+C+L V L F + Q++N+AS+WF+SLFI IFAT IL MRWSGVGID+WWRNEQFWV
Sbjct: 45 YCILPAVCLLTGKFIIPQISNIASIWFISLFISIFATGILEMRWSGVGIDEWWRNEQFWV 224
Query: 280 IGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDDD 387
IGG+S+HLFAVFQGLL V+AG+DTS T TSK D+D
Sbjct: 225 IGGISAHLFAVFQGLLKVLAGIDTSFTVTSKASDED 332
Score = 115 bits (245), Expect = 2e-025
Identities = 51/90 (56%), Positives = 60/90 (66%)
Frame = -1 / -1
Query: 371 FDVXVXLVSTPAMTXRSP*NTAKRCEDTPPMTQNCSFLHQSSIPTPLHLIXRMLVAKMQI 192
F+V V LVS PA T R P TA RC + PPMTQNCSFLH SS+PTPLHLI R+ VAK++I
Sbjct: 316 FEVTVKLVSMPASTFRRPWKTANRCAEIPPMTQNCSFLHHSSMPTPLHLISRIPVAKIEI 137
Query: 191 KSDMNHRLATLFSCSR*NSEHKVQTFHNKQ 102
K ++N LA L C N + QT N Q
Sbjct: 136 KREINQILAMLLICGMMNFPVRRQTAGNMQ 47
>gb|BU988138.1|BU988138 HF16M09r HF Hordeum vulgare subsp. vulgare cDNA clone HF16M09
5-PRIME, mRNA sequence
Length = 643
Score = 166 bits (358), Expect = 4e-041
Identities = 65/96 (67%), Positives = 79/96 (82%)
Frame = +1 / +1
Query: 100 FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWV 279
+C+L V L F + Q++N+AS+WF+SLFI IFAT IL MRWSGVGID+WWRNEQFWV
Sbjct: 142 YCILPAVCLLTGKFIIPQISNIASIWFISLFISIFATGILEMRWSGVGIDEWWRNEQFWV 321
Query: 280 IGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDDD 387
IGG+S+HLFAVFQGLL V+AG+DTS T TSK D+D
Sbjct: 322 IGGISAHLFAVFQGLLKVLAGIDTSFTVTSKASDED 429
Score = 115 bits (245), Expect = 2e-025
Identities = 51/90 (56%), Positives = 60/90 (66%)
Frame = -1 / -3
Query: 371 FDVXVXLVSTPAMTXRSP*NTAKRCEDTPPMTQNCSFLHQSSIPTPLHLIXRMLVAKMQI 192
F+V V LVS PA T R P TA RC + PPMTQNCSFLH SS+PTPLHLI R+ VAK++I
Sbjct: 413 FEVTVKLVSMPASTFRRPWKTANRCAEIPPMTQNCSFLHHSSMPTPLHLISRIPVAKIEI 234
Query: 191 KSDMNHRLATLFSCSR*NSEHKVQTFHNKQ 102
K ++N LA L C N + QT N Q
Sbjct: 233 KREINQILAMLLICGMMNFPVRRQTAGNMQ 144
>gb|CA025257.1|CA025257 HZ51J24r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ51J24
5-PRIME, mRNA sequence
Length = 463
Score = 162 bits (348), Expect = 1e-039
Identities = 61/82 (74%), Positives = 72/82 (87%)
Frame = +1 / +1
Query: 142 HLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWVIGGVSSHLFAVFQG 321
H Q++N+AS+WF+SLFI IFAT IL MRWSGVGID+WWRNEQFWVIGG+S+HLFAVFQG
Sbjct: 4 HEAQISNIASIWFISLFISIFATGILEMRWSGVGIDEWWRNEQFWVIGGISAHLFAVFQG 183
Query: 322 LLXVIAGVDTSXTXTSKGGDDD 387
LL V+AG+DTS T TSK D+D
Sbjct: 184 LLKVLAGIDTSFTVTSKASDED 249
Score = 111 bits (236), Expect = 3e-024
Identities = 46/75 (61%), Positives = 55/75 (73%)
Frame = -1 / -3
Query: 371 FDVXVXLVSTPAMTXRSP*NTAKRCEDTPPMTQNCSFLHQSSIPTPLHLIXRMLVAKMQI 192
F+V V LVS PA T R P TA RC + PPMTQNCSFLH SS+PTPLHLI R+ VAK++I
Sbjct: 233 FEVTVKLVSMPASTFRRPWKTANRCAEIPPMTQNCSFLHHSSMPTPLHLISRIPVAKIEI 54
Query: 191 KSDMNHRLATLFSCS 147
K ++N LA L C+
Sbjct: 53 KREINQILAMLLICA 9
>gb|BQ468619.1|BQ468619 HM01M13T HM Hordeum vulgare subsp. vulgare cDNA clone HM01M13
5-PRIME, mRNA sequence
Length = 653
Score = 161 bits (346), Expect = 2e-039
Identities = 61/83 (73%), Positives = 73/83 (87%)
Frame = +1 / +3
Query: 139 FHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWVIGGVSSHLFAVFQ 318
F + Q++N+AS+WF+SLFI IFAT IL MRWSGVGID+WWRNEQFWVIGG+S+HLFAVFQ
Sbjct: 12 FIIPQISNIASIWFISLFISIFATGILEMRWSGVGIDEWWRNEQFWVIGGISAHLFAVFQ 191
Query: 319 GLLXVIAGVDTSXTXTSKGGDDD 387
GLL V+AG+DTS T TSK D+D
Sbjct: 192 GLLKVLAGIDTSFTVTSKASDED 260
Score = 111 bits (236), Expect = 3e-024
Identities = 47/78 (60%), Positives = 55/78 (70%)
Frame = -1 / -2
Query: 371 FDVXVXLVSTPAMTXRSP*NTAKRCEDTPPMTQNCSFLHQSSIPTPLHLIXRMLVAKMQI 192
F+V V LVS PA T R P TA RC + PPMTQNCSFLH SS+PTPLHLI R+ VAK++I
Sbjct: 244 FEVTVKLVSMPASTFRRPWKTANRCAEIPPMTQNCSFLHHSSMPTPLHLISRIPVAKIEI 65
Query: 191 KSDMNHRLATLFSCSR*N 138
K ++N LA L C N
Sbjct: 64 KREINQILAMLLICGMMN 11
>gb|AV925770.1|AV925770 AV925770 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd25l19 5', mRNA sequence
Length = 425
Score = 160 bits (344), Expect = 4e-039
Identities = 60/79 (75%), Positives = 71/79 (89%)
Frame = +1 / +3
Query: 151 QLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWVIGGVSSHLFAVFQGLLX 330
Q++N+AS+WF+SLFI IFAT IL MRWSGVGID+WWRNEQFWVIGG+S+HLFAVFQGLL
Sbjct: 3 QISNIASIWFISLFISIFATGILEMRWSGVGIDEWWRNEQFWVIGGISAHLFAVFQGLLK 182
Query: 331 VIAGVDTSXTXTSKGGDDD 387
V+AG+DTS T TSK D+D
Sbjct: 183 VLAGIDTSFTVTSKASDED 239
Score = 110 bits (235), Expect = 4e-024
Identities = 46/74 (62%), Positives = 54/74 (72%)
Frame = -1 / -2
Query: 371 FDVXVXLVSTPAMTXRSP*NTAKRCEDTPPMTQNCSFLHQSSIPTPLHLIXRMLVAKMQI 192
F+V V LVS PA T R P TA RC + PPMTQNCSFLH SS+PTPLHLI R+ VAK++I
Sbjct: 223 FEVTVKLVSMPASTFRRPWKTANRCAEIPPMTQNCSFLHHSSMPTPLHLISRIPVAKIEI 44
Query: 191 KSDMNHRLATLFSC 150
K ++N LA L C
Sbjct: 43 KREINQILAMLLIC 2
>gb|BG414971.1|BG414971 HVSMEk0004I03f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0004I03f, mRNA sequence
Length = 634
Score = 158 bits (340), Expect = 1e-038
Identities = 59/96 (61%), Positives = 79/96 (82%)
Frame = +1 / +3
Query: 100 FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWV 279
+C+L + L F + +++N+AS+WF++LF+ IFAT IL MRWSGVGID+WWRNEQFWV
Sbjct: 123 YCILPAICLLTGKFIMPEISNLASIWFIALFLSIFATGILEMRWSGVGIDEWWRNEQFWV 302
Query: 280 IGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDDD 387
IGG+S+HLFAVFQGLL V+AG+DT+ T TSK D++
Sbjct: 303 IGGISAHLFAVFQGLLKVLAGIDTNFTVTSKANDEE 410
Score = 101 bits (215), Expect(2) = 1e-024
Identities = 45/71 (63%), Positives = 51/71 (71%)
Frame = -1 / -1
Query: 371 FDVXVXLVSTPAMTXRSP*NTAKRCEDTPPMTQNCSFLHQSSIPTPLHLIXRMLVAKMQI 192
F+V V LVS PA T R P* TA R + PPMTQNCSFLH SS+PTPLHLI R+ VAK++
Sbjct: 394 FEVTVKLVSIPASTFRRP*KTANRWAEIPPMTQNCSFLHHSSMPTPLHLISRIPVAKIER 215
Query: 191 KSDMNHRLATL 159
K MN LA L
Sbjct: 214 KRAMNQILAKL 182
Score = 30.4 bits (60), Expect(2) = 1e-024
Identities = 10/15 (66%), Positives = 15/15 (100%)
Frame = -1 / -1
Query: 47 SGVINFPVNKQMAGN 3
SG++NFPV++Q+AGN
Sbjct: 175 SGMMNFPVSRQIAGN 131
>gb|AV914152.1|AV914152 AV914152 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags4p09 5', mRNA sequence
Length = 583
Score = 158 bits (340), Expect = 1e-038
Identities = 59/96 (61%), Positives = 79/96 (82%)
Frame = +1 / +1
Query: 100 FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWV 279
+C+L + L F + +++N+AS+WF++LF+ IFAT IL MRWSGVGID+WWRNEQFWV
Sbjct: 43 YCILPAICLLTGKFIMPEISNLASIWFIALFLSIFATGILEMRWSGVGIDEWWRNEQFWV 222
Query: 280 IGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDDD 387
IGG+S+HLFAVFQGLL V+AG+DT+ T TSK D++
Sbjct: 223 IGGISAHLFAVFQGLLKVLAGIDTNFTVTSKANDEE 330
Score = 101 bits (215), Expect(2) = 5e-025
Identities = 45/71 (63%), Positives = 51/71 (71%)
Frame = -1 / -3
Query: 371 FDVXVXLVSTPAMTXRSP*NTAKRCEDTPPMTQNCSFLHQSSIPTPLHLIXRMLVAKMQI 192
F+V V LVS PA T R P* TA R + PPMTQNCSFLH SS+PTPLHLI R+ VAK++
Sbjct: 314 FEVTVKLVSIPASTFRRP*KTANRWAEIPPMTQNCSFLHHSSMPTPLHLISRIPVAKIER 135
Query: 191 KSDMNHRLATL 159
K MN LA L
Sbjct: 134 KRAMNQILAKL 102
Score = 31.8 bits (63), Expect(2) = 5e-025
Identities = 11/15 (73%), Positives = 15/15 (100%)
Frame = -1 / -3
Query: 47 SGVINFPVNKQMAGN 3
SG++NFPV+KQ+AGN
Sbjct: 95 SGMMNFPVSKQIAGN 51
>gb|AV914933.1|AV914933 AV914933 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags9b06 5', mRNA sequence
Length = 654
Score = 158 bits (340), Expect = 1e-038
Identities = 59/96 (61%), Positives = 79/96 (82%)
Frame = +1 / +2
Query: 100 FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWV 279
+C+L + L F + +++N+AS+WF++LF+ IFAT IL MRWSGVGID+WWRNEQFWV
Sbjct: 44 YCILPAICLLTGKFIMPEISNLASIWFIALFLSIFATGILEMRWSGVGIDEWWRNEQFWV 223
Query: 280 IGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDDD 387
IGG+S+HLFAVFQGLL V+AG+DT+ T TSK D++
Sbjct: 224 IGGISAHLFAVFQGLLKVLAGIDTNFTVTSKANDEE 331
Score = 101 bits (215), Expect(2) = 5e-025
Identities = 45/71 (63%), Positives = 51/71 (71%)
Frame = -1 / -1
Query: 371 FDVXVXLVSTPAMTXRSP*NTAKRCEDTPPMTQNCSFLHQSSIPTPLHLIXRMLVAKMQI 192
F+V V LVS PA T R P* TA R + PPMTQNCSFLH SS+PTPLHLI R+ VAK++
Sbjct: 315 FEVTVKLVSIPASTFRRP*KTANRWAEIPPMTQNCSFLHHSSMPTPLHLISRIPVAKIER 136
Query: 191 KSDMNHRLATL 159
K MN LA L
Sbjct: 135 KRAMNQILAKL 103
Score = 31.8 bits (63), Expect(2) = 5e-025
Identities = 11/15 (73%), Positives = 15/15 (100%)
Frame = -1 / -1
Query: 47 SGVINFPVNKQMAGN 3
SG++NFPV+KQ+AGN
Sbjct: 96 SGMMNFPVSKQIAGN 52
>gb|BM816138.1|BM816138 HC109B12_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC109B12_T3.ab1 similar to (AF200528) cellulose
synthase-4 [Zea mays],(AF200529) cellulose synthase-5
[Zea mays],(AF200533) cellulose synthase-9 [Zea
mays],cellulose synthase catalytic subunit [Arabidopsis
thaliana],unnamed protein product [Arabidopsis
thaliana],, mRNA sequence
Length = 880
Score = 158 bits (340), Expect = 1e-038
Identities = 59/96 (61%), Positives = 79/96 (82%)
Frame = +1 / +2
Query: 100 FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWV 279
+C+L + L F + +++N+AS+WF++LF+ IFAT IL MRWSGVGID+WWRNEQFWV
Sbjct: 242 YCILPAICLLTGKFIMPEISNLASIWFIALFLSIFATGILEMRWSGVGIDEWWRNEQFWV 421
Query: 280 IGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDDD 387
IGG+S+HLFAVFQGLL V+AG+DT+ T TSK D++
Sbjct: 422 IGGISAHLFAVFQGLLKVLAGIDTNFTVTSKANDEE 529
Score = 101 bits (215), Expect(2) = 5e-025
Identities = 45/71 (63%), Positives = 51/71 (71%)
Frame = -1 / -2
Query: 371 FDVXVXLVSTPAMTXRSP*NTAKRCEDTPPMTQNCSFLHQSSIPTPLHLIXRMLVAKMQI 192
F+V V LVS PA T R P* TA R + PPMTQNCSFLH SS+PTPLHLI R+ VAK++
Sbjct: 513 FEVTVKLVSIPASTFRRP*KTANRWAEIPPMTQNCSFLHHSSMPTPLHLISRIPVAKIER 334
Query: 191 KSDMNHRLATL 159
K MN LA L
Sbjct: 333 KRAMNQILAKL 301
Score = 31.8 bits (63), Expect(2) = 5e-025
Identities = 11/15 (73%), Positives = 15/15 (100%)
Frame = -1 / -2
Query: 47 SGVINFPVNKQMAGN 3
SG++NFPV+KQ+AGN
Sbjct: 294 SGMMNFPVSKQIAGN 250
>gb|CA012990.1|CA012990 HT07B01r HT Hordeum vulgare subsp. vulgare cDNA clone HT07B01
5-PRIME, mRNA sequence
Length = 579
Score = 158 bits (340), Expect = 1e-038
Identities = 59/96 (61%), Positives = 79/96 (82%)
Frame = +1 / +3
Query: 100 FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWV 279
+C+L + L F + +++N+AS+WF++LF+ IFAT IL MRWSGVGID+WWRNEQFWV
Sbjct: 168 YCILPAICLLTGKFIMPEISNLASIWFIALFLSIFATGILEMRWSGVGIDEWWRNEQFWV 347
Query: 280 IGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDDD 387
IGG+S+HLFAVFQGLL V+AG+DT+ T TSK D++
Sbjct: 348 IGGISAHLFAVFQGLLKVLAGIDTNFTVTSKANDEE 455
Score = 101 bits (215), Expect(2) = 5e-025
Identities = 45/71 (63%), Positives = 51/71 (71%)
Frame = -1 / -3
Query: 371 FDVXVXLVSTPAMTXRSP*NTAKRCEDTPPMTQNCSFLHQSSIPTPLHLIXRMLVAKMQI 192
F+V V LVS PA T R P* TA R + PPMTQNCSFLH SS+PTPLHLI R+ VAK++
Sbjct: 439 FEVTVKLVSIPASTFRRP*KTANRWAEIPPMTQNCSFLHHSSMPTPLHLISRIPVAKIER 260
Query: 191 KSDMNHRLATL 159
K MN LA L
Sbjct: 259 KRAMNQILAKL 227
Score = 31.8 bits (63), Expect(2) = 5e-025
Identities = 11/15 (73%), Positives = 15/15 (100%)
Frame = -1 / -3
Query: 47 SGVINFPVNKQMAGN 3
SG++NFPV+KQ+AGN
Sbjct: 220 SGMMNFPVSKQIAGN 176
>gb|BI779022.2|BI779022 EBro01_SQ002_J19_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ002_J19 5', mRNA sequence
Length = 439
Score = 158 bits (340), Expect = 1e-038
Identities = 59/96 (61%), Positives = 79/96 (82%)
Frame = +1 / +2
Query: 100 FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWV 279
+C+L + L F + +++N+AS+WF++LF+ IFAT IL MRWSGVGID+WWRNEQFWV
Sbjct: 74 YCILPAICLLTGKFIMPEISNLASIWFIALFLSIFATGILEMRWSGVGIDEWWRNEQFWV 253
Query: 280 IGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDDD 387
IGG+S+HLFAVFQGLL V+AG+DT+ T TSK D++
Sbjct: 254 IGGISAHLFAVFQGLLKVLAGIDTNFTVTSKANDEE 361
Score = 101 bits (215), Expect(2) = 3e-025
Identities = 45/71 (63%), Positives = 51/71 (71%)
Frame = -1 / -2
Query: 371 FDVXVXLVSTPAMTXRSP*NTAKRCEDTPPMTQNCSFLHQSSIPTPLHLIXRMLVAKMQI 192
F+V V LVS PA T R P* TA R + PPMTQNCSFLH SS+PTPLHLI R+ VAK++
Sbjct: 345 FEVTVKLVSIPASTFRRP*KTANRWAEIPPMTQNCSFLHHSSMPTPLHLISRIPVAKIER 166
Query: 191 KSDMNHRLATL 159
K MN LA L
Sbjct: 165 KRAMNQILAKL 133
Score = 31.8 bits (63), Expect(2) = 3e-025
Identities = 11/15 (73%), Positives = 15/15 (100%)
Frame = -1 / -2
Query: 47 SGVINFPVNKQMAGN 3
SG++NFPV+KQ+AGN
Sbjct: 126 SGMMNFPVSKQIAGN 82
>gb|BM816139.1|BM816139 HC105G09_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC105G09_T3.ab1 similar to (AF200528) cellulose
synthase-4 [Zea mays],(AF200529) cellulose synthase-5
[Zea mays],(AF200533) cellulose synthase-9 [Zea
mays],cellulose synthase catalytic subunit [Arabidopsis
thaliana],unnamed protein product [Arabidopsis
thaliana],, mRNA sequence
Length = 916
Score = 156 bits (336), Expect = 5e-038
Identities = 57/82 (69%), Positives = 73/82 (89%)
Frame = +1 / +1
Query: 142 HLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWVIGGVSSHLFAVFQG 321
HL +++N+AS+WF++LF+ IFAT IL MRWSGVGID+WWRNEQFWVIGG+S+HLFAVFQG
Sbjct: 46 HLPEISNLASIWFIALFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGISAHLFAVFQG 225
Query: 322 LLXVIAGVDTSXTXTSKGGDDD 387
LL V+AG+DT+ T TSK D++
Sbjct: 226 LLKVLAGIDTNFTVTSKANDEE 291
Score = 102 bits (218), Expect = 9e-022
Identities = 47/77 (61%), Positives = 53/77 (68%)
Frame = -1 / -3
Query: 371 FDVXVXLVSTPAMTXRSP*NTAKRCEDTPPMTQNCSFLHQSSIPTPLHLIXRMLVAKMQI 192
F+V V LVS PA T R P* TA R + PPMTQNCSFLH SS+PTPLHLI R+ VAK++
Sbjct: 275 FEVTVKLVSIPASTFRRP*KTANRWAEIPPMTQNCSFLHHSSMPTPLHLISRIPVAKIER 96
Query: 191 KSDMNHRLATLFSCSR* 141
K MN LA L R*
Sbjct: 95 KRAMNQILAKLLISGR* 45
>gb|BQ463573.1|BQ463573 HI05L24r HI Hordeum vulgare subsp. vulgare cDNA clone HI05L24
5-PRIME, mRNA sequence
Length = 591
Score = 155 bits (334), Expect = 9e-038
Identities = 58/96 (60%), Positives = 78/96 (81%)
Frame = +1 / +1
Query: 100 FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWV 279
+C+L + L F + +++N+AS+WF++LF+ IFAT IL MRWSGVGID+WWRNEQFWV
Sbjct: 277 YCILPAICLLTGKFIMPEISNLASIWFIALFLSIFATGILEMRWSGVGIDEWWRNEQFWV 456
Query: 280 IGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDDD 387
IGG+S+HLFAVFQGLL V+AG+DT+ T TS D++
Sbjct: 457 IGGISAHLFAVFQGLLKVLAGIDTNFTVTSXANDEE 564
Score = 98.7 bits (209), Expect(2) = 3e-024
Identities = 44/70 (62%), Positives = 50/70 (71%)
Frame = -1 / -2
Query: 368 DVXVXLVSTPAMTXRSP*NTAKRCEDTPPMTQNCSFLHQSSIPTPLHLIXRMLVAKMQIK 189
+V V LVS PA T R P* TA R + PPMTQNCSFLH SS+PTPLHLI R+ VAK++ K
Sbjct: 545 EVTVKLVSIPASTFRRP*KTANRWAEIPPMTQNCSFLHHSSMPTPLHLISRIPVAKIERK 366
Query: 188 SDMNHRLATL 159
MN LA L
Sbjct: 365 RAMNQILAKL 336
Score = 31.8 bits (63), Expect(2) = 3e-024
Identities = 11/15 (73%), Positives = 15/15 (100%)
Frame = -1 / -2
Query: 47 SGVINFPVNKQMAGN 3
SG++NFPV+KQ+AGN
Sbjct: 329 SGMMNFPVSKQIAGN 285
>gb|AV925215.1|AV925215 AV925215 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd22e04 5', mRNA sequence
Length = 656
Score = 153 bits (328), Expect = 6e-037
Identities = 56/77 (72%), Positives = 69/77 (89%)
Frame = +1 / +3
Query: 157 NNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWVIGGVSSHLFAVFQGLLXVI 336
NN+AS+WF++LF+ IFAT IL MRWSGVGID+WWRNEQFWVIGG+S+HLFAVFQGLL V+
Sbjct: 108 NNLASIWFIALFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGISAHLFAVFQGLLKVL 287
Query: 337 AGVDTSXTXTSKGGDDD 387
AG+DT+ T TSK D++
Sbjct: 288 AGIDTNFTVTSKANDEE 338
Score = 101 bits (215), Expect = 2e-021
Identities = 45/71 (63%), Positives = 51/71 (71%)
Frame = -1 / -2
Query: 371 FDVXVXLVSTPAMTXRSP*NTAKRCEDTPPMTQNCSFLHQSSIPTPLHLIXRMLVAKMQI 192
F+V V LVS PA T R P* TA R + PPMTQNCSFLH SS+PTPLHLI R+ VAK++
Sbjct: 322 FEVTVKLVSIPASTFRRP*KTANRWAEIPPMTQNCSFLHHSSMPTPLHLISRIPVAKIER 143
Query: 191 KSDMNHRLATL 159
K MN LA L
Sbjct: 142 KRAMNQILAKL 110
>gb|AV923333.1|AV923333 AV923333 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd12l12 5', mRNA sequence
Length = 656
Score = 149 bits (319), Expect = 1e-035
Identities = 58/96 (60%), Positives = 73/96 (76%)
Frame = +1 / +2
Query: 100 FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWV 279
+C + V L F + LNN+AS+WF++LF+ I AT +L +RWSGV I+DWWRNEQFWV
Sbjct: 77 YCTIPAVCLLTGKFIIPTLNNLASIWFIALFMSIIATGVLELRWSGVSIEDWWRNEQFWV 256
Query: 280 IGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDDD 387
IGGVS+HLFAVFQG L V+ GVDT+ T TSK G D+
Sbjct: 257 IGGVSAHLFAVFQGFLKVLGGVDTNFTVTSKAGADE 364
>gb|BF258638.2|BF258638 HVSMEf0016E13f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0016E13f, mRNA sequence
Length = 578
Score = 146 bits (314), Expect = 5e-035
Identities = 56/96 (58%), Positives = 75/96 (78%)
Frame = +1 / +1
Query: 100 FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWV 279
+C+L + L + F + +++N A ++F+ +F IFAT IL +RWSGVGI+DWWRNEQFWV
Sbjct: 115 YCVLPAICLLTNKFIIPEISNYAGMFFILMFASIFATGILELRWSGVGIEDWWRNEQFWV 294
Query: 280 IGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDDD 387
IGG S+HLFAVFQGLL V+AG+DT+ T TSK D+D
Sbjct: 295 IGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKANDED 402
>gb|BF064711.2|BF064711 HV_CEb0017G02f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0017G02f, mRNA sequence
Length = 812
Score = 146 bits (314), Expect = 5e-035
Identities = 56/96 (58%), Positives = 75/96 (78%)
Frame = +1 / +2
Query: 100 FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWV 279
+C+L + L + F + +++N A ++F+ +F IFAT IL +RWSGVGI+DWWRNEQFWV
Sbjct: 278 YCVLPAICLLTNKFIIPEISNYAGMFFILMFASIFATGILELRWSGVGIEDWWRNEQFWV 457
Query: 280 IGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDDD 387
IGG S+HLFAVFQGLL V+AG+DT+ T TSK D+D
Sbjct: 458 IGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKANDED 565
>gb|BJ453328.1|BJ453328 BJ453328 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak42j03 5', mRNA sequence
Length = 685
Score = 146 bits (314), Expect = 5e-035
Identities = 56/96 (58%), Positives = 75/96 (78%)
Frame = +1 / +1
Query: 100 FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWV 279
+C+L + L + F + +++N A ++F+ +F IFAT IL +RWSGVGI+DWWRNEQFWV
Sbjct: 190 YCVLPAICLLTNKFIIPEISNYAGMFFILMFASIFATGILELRWSGVGIEDWWRNEQFWV 369
Query: 280 IGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDDD 387
IGG S+HLFAVFQGLL V+AG+DT+ T TSK D+D
Sbjct: 370 IGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKANDED 477
>gb|BQ467842.1|BQ467842 HR01B16r HR Hordeum vulgare subsp. vulgare cDNA clone HR01B16
5-PRIME, mRNA sequence
Length = 498
Score = 146 bits (314), Expect = 5e-035
Identities = 56/96 (58%), Positives = 75/96 (78%)
Frame = +1 / +3
Query: 100 FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWV 279
+C+L + L + F + +++N A ++F+ +F IFAT IL +RWSGVGI+DWWRNEQFWV
Sbjct: 84 YCVLPAICLLTNKFIIPEISNYAGMFFILMFASIFATGILELRWSGVGIEDWWRNEQFWV 263
Query: 280 IGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDDD 387
IGG S+HLFAVFQGLL V+AG+DT+ T TSK D+D
Sbjct: 264 IGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKANDED 371
>gb|BM376392.2|BM376392 EBem05_SQ002_B14_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ002_B14 5', mRNA sequence
Length = 555
Score = 146 bits (314), Expect = 5e-035
Identities = 56/96 (58%), Positives = 75/96 (78%)
Frame = +1 / +2
Query: 100 FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWV 279
+C+L + L + F + +++N A ++F+ +F IFAT IL +RWSGVGI+DWWRNEQFWV
Sbjct: 143 YCVLPAICLLTNKFIIPEISNYAGMFFILMFASIFATGILELRWSGVGIEDWWRNEQFWV 322
Query: 280 IGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDDD 387
IGG S+HLFAVFQGLL V+AG+DT+ T TSK D+D
Sbjct: 323 IGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKANDED 430
>gb|BU972673.1|BU972673 HB22G06r BC Hordeum vulgare subsp. vulgare cDNA clone HB22G06
5-PRIME, mRNA sequence
Length = 655
Score = 146 bits (314), Expect = 5e-035
Identities = 56/96 (58%), Positives = 75/96 (78%)
Frame = +1 / +3
Query: 100 FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWV 279
+C+L + L + F + +++N A ++F+ +F IFAT IL +RWSGVGI+DWWRNEQFWV
Sbjct: 342 YCVLPAICLLTNKFIIPEISNYAGMFFILMFASIFATGILELRWSGVGIEDWWRNEQFWV 521
Query: 280 IGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDDD 387
IGG S+HLFAVFQGLL V+AG+DT+ T TSK D+D
Sbjct: 522 IGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKANDED 629
>gb|BU985115.1|BU985115 HF06C19r HF Hordeum vulgare subsp. vulgare cDNA clone HF06C19
5-PRIME, mRNA sequence
Length = 548
Score = 146 bits (314), Expect = 5e-035
Identities = 56/96 (58%), Positives = 75/96 (78%)
Frame = +1 / +3
Query: 100 FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWV 279
+C+L + L + F + +++N A ++F+ +F IFAT IL +RWSGVGI+DWWRNEQFWV
Sbjct: 150 YCVLPAICLLTNKFIIPEISNYAGMFFILMFASIFATGILELRWSGVGIEDWWRNEQFWV 329
Query: 280 IGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDDD 387
IGG S+HLFAVFQGLL V+AG+DT+ T TSK D+D
Sbjct: 330 IGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKANDED 437
>gb|BF259974.3|BF259974 HVSMEf0020M07f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0020M07f, mRNA sequence
Length = 533
Score = 145 bits (311), Expect = 1e-034
Identities = 54/78 (69%), Positives = 66/78 (84%)
Frame = +1 / +3
Query: 154 LNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWVIGGVSSHLFAVFQGLLXV 333
LNN+AS+WF++LF+ I AT +L +RWSGV I+DWWRNEQFWVIGGVS+HLFAVFQG L V
Sbjct: 3 LNNLASIWFIALFMSIIATGVLELRWSGVSIEDWWRNEQFWVIGGVSAHLFAVFQGFLKV 182
Query: 334 IAGVDTSXTXTSKGGDDD 387
+ GVDT+ T TSK G D+
Sbjct: 183 LGGVDTNFTVTSKAGADE 236
>gb|AL503512.1|AL503512 AL503512 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02G16T 5', mRNA sequence
Length = 700
Score = 142 bits (305), Expect = 9e-034
Identities = 54/87 (62%), Positives = 70/87 (80%)
Frame = +1 / +3
Query: 127 LCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWVIGGVSSHLF 306
L + F + +++N A ++F+ +F IFAT IL +RWSGVGI+DWWRNEQFWVIGG S+HLF
Sbjct: 36 LTNKFIIPEISNYAGMFFILMFASIFATGILELRWSGVGIEDWWRNEQFWVIGGTSAHLF 215
Query: 307 AVFQGLLXVIAGVDTSXTXTSKGGDDD 387
AVFQGLL V+AG+DT+ T TSK D+D
Sbjct: 216 AVFQGLLKVLAGIDTNFTVTSKANDED 296
>gb|CA030609.1|CA030609 HX07J05r HX Hordeum vulgare subsp. vulgare cDNA clone HX07J05
5-PRIME, mRNA sequence
Length = 617
Score = 142 bits (305), Expect = 9e-034
Identities = 54/87 (62%), Positives = 70/87 (80%)
Frame = +1 / +2
Query: 127 LCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWVIGGVSSHLF 306
L + F + +++N A ++F+ +F IFAT IL +RWSGVGI+DWWRNEQFWVIGG S+HLF
Sbjct: 44 LTNKFIIPEISNYAGMFFILMFASIFATGILELRWSGVGIEDWWRNEQFWVIGGTSAHLF 223
Query: 307 AVFQGLLXVIAGVDTSXTXTSKGGDDD 387
AVFQGLL V+AG+DT+ T TSK D+D
Sbjct: 224 AVFQGLLKVLAGIDTNFTVTSKANDED 304
>gb|CA030647.1|CA030647 HX07L05r HX Hordeum vulgare subsp. vulgare cDNA clone HX07L05
5-PRIME, mRNA sequence
Length = 638
Score = 142 bits (305), Expect = 9e-034
Identities = 54/87 (62%), Positives = 70/87 (80%)
Frame = +1 / +2
Query: 127 LCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWVIGGVSSHLF 306
L + F + +++N A ++F+ +F IFAT IL +RWSGVGI+DWWRNEQFWVIGG S+HLF
Sbjct: 44 LTNKFIIPEISNYAGMFFILMFASIFATGILELRWSGVGIEDWWRNEQFWVIGGTSAHLF 223
Query: 307 AVFQGLLXVIAGVDTSXTXTSKGGDDD 387
AVFQGLL V+AG+DT+ T TSK D+D
Sbjct: 224 AVFQGLLKVLAGIDTNFTVTSKANDED 304
>gb|BG417165.1|BG417165 HVSMEk0016J06f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0016J06f, mRNA sequence
Length = 475
Score = 141 bits (302), Expect = 2e-033
Identities = 54/82 (65%), Positives = 68/82 (82%)
Frame = +1 / +3
Query: 100 FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWV 279
+C+L V L F + Q++N+AS+WF+SLFI IFAT IL M+WS VGID+WWRNEQFWV
Sbjct: 228 YCILPAVCLLTGKFIIPQISNIASIWFISLFISIFATGILEMKWSXVGIDEWWRNEQFWV 407
Query: 280 IGGVSSHLFAVFQGLLXVIAGV 345
IGG+S+HLFAVFQGLL V+AG+
Sbjct: 408 IGGISAHLFAVFQGLLKVLAGI 473
Score = 99.6 bits (211), Expect = 8e-021
Identities = 44/80 (55%), Positives = 52/80 (65%)
Frame = -1 / -1
Query: 341 PAMTXRSP*NTAKRCEDTPPMTQNCSFLHQSSIPTPLHLIXRMLVAKMQIKSDMNHRLAT 162
PA T R P* TA RC + PPMTQNCSFLH SS+PT LH I R+ VAK++IK ++N LA
Sbjct: 469 PASTFRRP*KTANRCAEIPPMTQNCSFLHHSSMPTXLHFISRIPVAKIEIKREINQILAM 290
Query: 161 LFSCSR*NSEHKVQTFHNKQ 102
L C N + QT N Q
Sbjct: 289 LLICGMMNFPVRRQTAGNMQ 230
>gb|AV932043.1|AV932043 AV932043 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal2a04 5', mRNA sequence
Length = 615
Score = 132 bits (283), Expect = 1e-030
Identities = 49/76 (64%), Positives = 64/76 (84%)
Frame = +1 / +2
Query: 100 FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWV 279
+C+L + L F + +++N+AS+WF++LF+ IFAT IL MRWSGVGID+WWRNEQFWV
Sbjct: 383 YCILPAICLLTGKFIMPEISNLASIWFIALFLSIFATGILEMRWSGVGIDEWWRNEQFWV 562
Query: 280 IGGVSSHLFAVFQGLL 327
IGG+S+HLFAVFQGLL
Sbjct: 563 IGGISAHLFAVFQGLL 610
>gb|BI776485.2|BI776485 EBpi05_SQ001_J01_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ001_J01 5', mRNA sequence
Length = 518
Score = 121 bits (259), Expect = 2e-027
Identities = 45/57 (78%), Positives = 51/57 (89%)
Frame = +1 / +1
Query: 217 LXMRWSGVGIDDWWRNEQFWVIGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDDD 387
L MRWSGVGID+WWRNEQFWVIGG+S+HLFAVFQGLL V+AG+DTS T TSK D+D
Sbjct: 1 LEMRWSGVGIDEWWRNEQFWVIGGISAHLFAVFQGLLKVLAGIDTSFTVTSKASDED 171
>gb|CB876338.1|CB876338 HX10P19w HX Hordeum vulgare subsp. vulgare cDNA clone HX10P19
3-PRIME, mRNA sequence
Length = 616
Score = 121 bits (259), Expect = 2e-027
Identities = 45/57 (78%), Positives = 51/57 (89%)
Frame = +1 / -2
Query: 217 LXMRWSGVGIDDWWRNEQFWVIGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDDD 387
L MRWSGVGID+WWRNEQFWVIGG+S+HLFAVFQGLL V+AG+DTS T TSK D+D
Sbjct: 615 LEMRWSGVGIDEWWRNEQFWVIGGISAHLFAVFQGLLKVLAGIDTSFTVTSKASDED 445
>gb|AV927219.1|AV927219 AV927219 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd1a04 3', mRNA sequence
Length = 588
Score = 120 bits (256), Expect = 5e-027
Identities = 46/54 (85%), Positives = 50/54 (92%)
Frame = +1 / -3
Query: 244 IDDWWRNEQFWVIGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDDDEFSELY 405
+DDWWRNEQFWVIGGVS+HLFAVFQGLL VIAGVDTS T T+K GDD+EFSELY
Sbjct: 583 VDDWWRNEQFWVIGGVSAHLFAVFQGLLKVIAGVDTSFTVTTKAGDDEEFSELY 422
>gb|CA025840.1|CA025840 HZ53E19r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ53E19
5-PRIME, mRNA sequence
Length = 456
Score = 120 bits (256), Expect = 5e-027
Identities = 46/54 (85%), Positives = 50/54 (92%)
Frame = +1 / +3
Query: 244 IDDWWRNEQFWVIGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDDDEFSELY 405
+DDWWRNEQFWVIGGVS+HLFAVFQGLL VIAGVDTS T T+K GDD+EFSELY
Sbjct: 3 VDDWWRNEQFWVIGGVSAHLFAVFQGLLKVIAGVDTSFTVTTKAGDDEEFSELY 164
>gb|BQ739972.1|BQ739972 HB107G12 HB Hordeum vulgare subsp. vulgare cDNA clone HB107G12
similar to (AF200533) cellulose synthase-9 [Zea mays],
mRNA sequence
Length = 623
Score = 112 bits (239), Expect = 1e-024
Identities = 45/85 (52%), Positives = 61/85 (71%)
Frame = +1 / +1
Query: 100 FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWV 279
+C+L + L F + +++N+AS+WF++LF+ IFA L MRWSGVGID WR EQFWV
Sbjct: 295 YCILPAICLLTGKFIMPEISNLASIWFIALFLSIFANGNLEMRWSGVGIDQGWRKEQFWV 474
Query: 280 IGGVSSHLFAVFQGLLXVIAGVDTS 354
IGG+S+ FA FQGLL +AG T+
Sbjct: 475 IGGISALRFARFQGLLKGLAGYQTT 549
>gb|BU990492.1|BU990492 HF25D10r HF Hordeum vulgare subsp. vulgare cDNA clone HF25D10
5-PRIME, mRNA sequence
Length = 621
Score = 112 bits (239), Expect = 1e-024
Identities = 40/53 (75%), Positives = 48/53 (90%)
Frame = +1 / +3
Query: 229 WSGVGIDDWWRNEQFWVIGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDDD 387
WSGVGID+WWRNEQFWVIGG+S+HLFAVFQGLL V+AG+DT+ T TSK D++
Sbjct: 12 WSGVGIDEWWRNEQFWVIGGISAHLFAVFQGLLKVLAGIDTNFTVTSKANDEE 170
>gb|AV931092.1|AV931092 AV931092 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd18i05 3', mRNA sequence
Length = 658
Score = 110 bits (235), Expect = 4e-024
Identities = 41/52 (78%), Positives = 47/52 (90%)
Frame = +1 / -2
Query: 232 SGVGIDDWWRNEQFWVIGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDDD 387
SGVGID+WWRNEQFWVIGG+S+HLFAVFQGLL V+AG+DTS T TSK D+D
Sbjct: 657 SGVGIDEWWRNEQFWVIGGISAHLFAVFQGLLKVLAGIDTSFTVTSKASDED 502
>gb|BM817226.1|BM817226 HC109A10_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC109A10_T3.ab1 similar to (AC009525) Very similar to
cellulose synthase catalytic subunit [Arabidopsis
thaliana], mRNA sequence
Length = 927
Score = 106 bits (226), Expect = 7e-023
Identities = 40/87 (45%), Positives = 60/87 (68%)
Frame = +1 / +1
Query: 139 FHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWVIGGVSSHLFAVFQ 318
F + +L+ + + + + + ++L ++WSG+ +++WWRNEQFW+IGG S+HL AV Q
Sbjct: 43 FIVKELDVTFLTYLLVITLTLCMLAVLEIKWSGINLEEWWRNEQFWLIGGTSAHLAAVLQ 222
Query: 319 GLLXVIAGVDTSXTXTSKGGDDDEFSE 399
GLL VIAG++ S T TSK G DDE E
Sbjct: 223 GLLKVIAGIEISFTLTSKSGADDENDE 303
>gb|AV931093.1|AV931093 AV931093 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd18i06 3', mRNA sequence
Length = 658
Score = 105 bits (225), Expect = 1e-022
Identities = 39/50 (78%), Positives = 45/50 (90%)
Frame = +1 / -1
Query: 238 VGIDDWWRNEQFWVIGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDDD 387
VGID+WWRNEQFWVIGG+S+HLFAVFQGLL V+AG+DTS T TSK D+D
Sbjct: 658 VGIDEWWRNEQFWVIGGISAHLFAVFQGLLKVLAGIDTSFTVTSKASDED 509
>gb|BU967242.1|BU967242 HB03K11r BC Hordeum vulgare subsp. vulgare cDNA clone HB03K11
5-PRIME, mRNA sequence
Length = 577
Score = 105 bits (225), Expect = 1e-022
Identities = 39/51 (76%), Positives = 45/51 (88%)
Frame = +1 / +1
Query: 235 GVGIDDWWRNEQFWVIGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDDD 387
GV ID+WWRNEQFWVIGG+S+HLFAVFQGLL V+AG+DTS T TSK D+D
Sbjct: 13 GVAIDEWWRNEQFWVIGGISAHLFAVFQGLLKVLAGIDTSFTVTSKASDED 165
>gb|CB860194.1|CB860194 HI12P13w HI Hordeum vulgare subsp. vulgare cDNA clone HI12P13
3-PRIME, mRNA sequence
Length = 651
Score = 105 bits (225), Expect = 1e-022
Identities = 39/50 (78%), Positives = 45/50 (90%)
Frame = +1 / -1
Query: 238 VGIDDWWRNEQFWVIGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDDD 387
VGID+WWRNEQFWVIGG+S+HLFAVFQGLL V+AG+DTS T TSK D+D
Sbjct: 651 VGIDEWWRNEQFWVIGGISAHLFAVFQGLLKVLAGIDTSFTVTSKASDED 502
>gb|BG365821.2|BG365821 HVSMEi0004F18f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0004F18f, mRNA sequence
Length = 888
Score = 105 bits (223), Expect = 2e-022
Identities = 41/100 (41%), Positives = 63/100 (63%)
Frame = +1 / +1
Query: 100 FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWV 279
+C L + F + +L+ + + + + + ++L ++WSG+ +++WWRNEQFW+
Sbjct: 151 YCFLPALSLFSGQFIVKELDVTFLTYLLVITLTLCMLAVLEIKWSGINLEEWWRNEQFWL 330
Query: 280 IGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDDDEFSE 399
IGG S+HL AV QGLL VIAG++ T TSK G DDE E
Sbjct: 331 IGGTSAHLAAVLQGLLKVIAGIEIYFTLTSKSGADDENDE 450
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 179,775,767
Number of Sequences: 312970
Number of extensions: 2362267
Number of successful extensions: 69878
Number of sequences better than 1.0e-020: 61
length of database: 58,378,179
effective HSP length: 50
effective length of database: 42,729,679
effective search space used: 3888400789
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)