TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAM14e11.yg.2.1
(197 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG369152.1|BG369152 HVSMEi0022M21f Hordeum vulgare 20 DA... 128 1e-029
gb|CA012753.1|CA012753 HT06F12r HT Hordeum vulgare subsp. v... 128 1e-029
gb|AV836706.1|AV836706 AV836706 K. Sato unpublished cDNA li... 116 3e-026
gb|CA007166.1|CA007166 HU06P22r HU Hordeum vulgare subsp. v... 114 2e-025
gb|CA008120.1|CA008120 HU09P10r HU Hordeum vulgare subsp. v... 114 2e-025
gb|CA018261.1|CA018261 HV08B18r HV Hordeum vulgare subsp. v... 110 4e-024
>gb|BG369152.1|BG369152 HVSMEi0022M21f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0022M21f, mRNA sequence
Length = 826
Score = 128 bits (274), Expect = 1e-029
Identities = 51/65 (78%), Positives = 61/65 (93%)
Frame = -2 / +1
Query: 196 PMVLTGHSLGRNKLEQILKQGRMSKEEIDSTYKIMRRIEGEELALDASELVITSTRQEID 17
PMV TGHSLGR+KLEQ+LKQGR +++E+++TYKIMRRIE EEL LDASE+VITSTRQEID
Sbjct: 58 PMVFTGHSLGRDKLEQLLKQGRQTRDEVNATYKIMRRIEAEELCLDASEIVITSTRQEID 237
Query: 16 EQWGL 2
+QWGL
Sbjct: 238 KQWGL 252
>gb|CA012753.1|CA012753 HT06F12r HT Hordeum vulgare subsp. vulgare cDNA clone HT06F12
5-PRIME, mRNA sequence
Length = 700
Score = 128 bits (274), Expect = 1e-029
Identities = 51/65 (78%), Positives = 61/65 (93%)
Frame = -2 / +1
Query: 196 PMVLTGHSLGRNKLEQILKQGRMSKEEIDSTYKIMRRIEGEELALDASELVITSTRQEID 17
PMV TGHSLGR+KLEQ+LKQGR +++E+++TYKIMRRIE EEL LDASE+VITSTRQEID
Sbjct: 469 PMVFTGHSLGRDKLEQLLKQGRQTRDEVNATYKIMRRIEAEELCLDASEIVITSTRQEID 648
Query: 16 EQWGL 2
+QWGL
Sbjct: 649 KQWGL 663
>gb|AV836706.1|AV836706 AV836706 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare seedling leaves second leaf stage Hordeum
vulgare subsp. vulgare cDNA clone basd26l03, mRNA
sequence
Length = 555
Score = 116 bits (249), Expect = 3e-026
Identities = 48/65 (73%), Positives = 56/65 (86%)
Frame = -2 / +1
Query: 196 PMVLTGHSLGRNKLEQILKQGRMSKEEIDSTYKIMRRIEGEELALDASELVITSTRQEID 17
PM TGH LG++KLE +LKQGR S+EEI+ TYKIMRRIE EEL+LDASE+VI STRQEI+
Sbjct: 298 PMAFTGHFLGKDKLEGLLKQGRQSREEINMTYKIMRRIEAEELSLDASEIVIASTRQEIE 477
Query: 16 EQWGL 2
EQW L
Sbjct: 478 EQWNL 492
>gb|CA007166.1|CA007166 HU06P22r HU Hordeum vulgare subsp. vulgare cDNA clone HU06P22
5-PRIME, mRNA sequence
Length = 660
Score = 114 bits (243), Expect = 2e-025
Identities = 47/64 (73%), Positives = 56/64 (87%)
Frame = -2 / +3
Query: 193 MVLTGHSLGRNKLEQILKQGRMSKEEIDSTYKIMRRIEGEELALDASELVITSTRQEIDE 14
MV TGH LG++KLE +LKQGR ++EEI+ TYKIMRRIE EEL+LDASE+VI STRQEI+E
Sbjct: 42 MVFTGHFLGKDKLEGLLKQGRQTREEINMTYKIMRRIEAEELSLDASEIVIASTRQEIEE 221
Query: 13 QWGL 2
QW L
Sbjct: 222 QWNL 233
>gb|CA008120.1|CA008120 HU09P10r HU Hordeum vulgare subsp. vulgare cDNA clone HU09P10
5-PRIME, mRNA sequence
Length = 594
Score = 114 bits (243), Expect = 2e-025
Identities = 47/64 (73%), Positives = 56/64 (87%)
Frame = -2 / +3
Query: 193 MVLTGHSLGRNKLEQILKQGRMSKEEIDSTYKIMRRIEGEELALDASELVITSTRQEIDE 14
MV TGH LG++KLE +LKQGR ++EEI+ TYKIMRRIE EEL+LDASE+VI STRQEI+E
Sbjct: 258 MVFTGHFLGKDKLEGLLKQGRQTREEINMTYKIMRRIEAEELSLDASEIVIASTRQEIEE 437
Query: 13 QWGL 2
QW L
Sbjct: 438 QWNL 449
>gb|CA018261.1|CA018261 HV08B18r HV Hordeum vulgare subsp. vulgare cDNA clone HV08B18
5-PRIME, mRNA sequence
Length = 634
Score = 110 bits (234), Expect = 4e-024
Identities = 45/61 (73%), Positives = 54/61 (88%)
Frame = -2 / +1
Query: 184 TGHSLGRNKLEQILKQGRMSKEEIDSTYKIMRRIEGEELALDASELVITSTRQEIDEQWG 5
TGH LG++KLE +LKQGR ++EEI+ TYKIMRRIE EEL+LDASE+VI STRQEI+EQW
Sbjct: 25 TGHFLGKDKLEGLLKQGRQTREEINMTYKIMRRIEAEELSLDASEIVIASTRQEIEEQWN 204
Query: 4 L 2
L
Sbjct: 205 L 207
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 111,727,384
Number of Sequences: 312970
Number of extensions: 1686891
Number of successful extensions: 295857
Number of sequences better than 1.0e-020: 7
length of database: 58,378,179
effective HSP length: 46
effective length of database: 43,981,559
effective search space used: 835649621
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)