TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAJ4a11.xg.3.2
(2249 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BJ464842.1|BJ464842 BJ464842 K. Sato unpublished cDNA li... 476 e-133
gb|CA012277.1|CA012277 HT04P11r HT Hordeum vulgare subsp. v... 391 e-108
gb|BQ465790.1|BQ465790 HU04L04r HU Hordeum vulgare subsp. v... 250 3e-095
gb|AV922784.1|AV922784 AV922784 K. Sato unpublished cDNA li... 147 8e-069
gb|AV925225.1|AV925225 AV925225 K. Sato unpublished cDNA li... 120 6e-052
gb|AV927504.1|AV927504 AV927504 K. Sato unpublished cDNA li... 153 5e-050
gb|CA012050.1|CA012050 HT04E19r HT Hordeum vulgare subsp. v... 120 3e-049
gb|AV930376.1|AV930376 AV930376 K. Sato unpublished cDNA li... 157 2e-048
gb|AV919436.1|AV919436 AV919436 K. Sato unpublished cDNA li... 72 7e-032
gb|BF621599.1|BF621599 HVSMEa0011J02f Hordeum vulgare seedl... 72 1e-029
gb|CV062923.1|CV062923 BNEL84f3 Barley EST endosperm librar... 71 2e-028
gb|AV914404.1|AV914404 AV914404 K. Sato unpublished cDNA li... 72 8e-027
gb|BU987349.1|BU987349 HF14I07r HF Hordeum vulgare subsp. v... 97 2e-024
gb|BQ663940.1|BQ663940 HU04L04u HU Hordeum vulgare subsp. v... 84 6e-024
gb|CA013424.1|CA013424 HT08G16r HT Hordeum vulgare subsp. v... 55 8e-024
>gb|BJ464842.1|BJ464842 BJ464842 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags36e10 5', mRNA sequence
Length = 643
Score = 476 bits (1034), Expect = e-133
Identities = 194/214 (90%), Positives = 205/214 (95%)
Frame = +3 / +1
Query: 717 SSYDLSGDKVFLDKAKDITDRLLPAWDTTSGIPYNRINLAHGRAHNPGWTNGDSILADSG 896
S+YD+SGDKVFL+KAKDI DRLLPAWDTTSGIPYN INLAHGRAHN GWTNGDSILADSG
Sbjct: 1 SAYDMSGDKVFLEKAKDIADRLLPAWDTTSGIPYNSINLAHGRAHNFGWTNGDSILADSG 180
Query: 897 TEQLEFIALSQRTGDPKYQQKAENVIKQLQKIYPSDGLLPIYINPHSGTASYSTITFGAM 1076
TEQLEFIALSQRTGDPKYQ KAENVI+QLQKIYPSDGLLPIYINP SG ASYSTITFGAM
Sbjct: 181 TEQLEFIALSQRTGDPKYQLKAENVIRQLQKIYPSDGLLPIYINPQSGQASYSTITFGAM 360
Query: 1077 GDSFYEYLLKVWIQGNKTEHVKHYRQMWETSMEGLLSLTKKTTPSNYYYICEKNGGSLSD 1256
GDSFYEYLLKVWIQGNKTE VKHYRQMWETSMEGL+SLT++TTPSNY YICEK+GGSLS
Sbjct: 361 GDSFYEYLLKVWIQGNKTESVKHYRQMWETSMEGLISLTRQTTPSNYTYICEKSGGSLSH 540
Query: 1257 KMDELACFAPGMLALGASGYGPEKSEQIMNLAKE 1358
KMDELACFAPGMLALGASGYGPEK++QIMNLA+E
Sbjct: 541 KMDELACFAPGMLALGASGYGPEKAKQIMNLAEE 642
Score = 377 bits (817), Expect = e-103
Identities = 174/212 (82%), Positives = 185/212 (87%)
Frame = -2 / -3
Query: 1357 SFARFIICSDFSGP*PEAPKASIPGAKQASSSILSDNEPPFFSQM***LDGVVFLVKLNR 1178
S ARFIIC FSGP*PEAP ASIPGAK ASSSIL DNEPP FSQ+ *L+GVV LVKL +
Sbjct: 641 SSARFIICLAFSGP*PEAPSASIPGAKHASSSIL*DNEPPLFSQIYV*LEGVVCLVKLIK 462
Query: 1177 PSIDVSHICL*CFTCSVLFPWIQTLSKYS*KLSPIAPNVIVEYDAVPE*GFM*IGSKPSL 998
PSIDVSHICL*CFT SVLFP IQTLSKYS*KLSPIAPNVIVEYDA P+*GF+*IGSKPSL
Sbjct: 461 PSIDVSHICL*CFTLSVLFP*IQTLSKYS*KLSPIAPNVIVEYDACPD*GFI*IGSKPSL 282
Query: 997 GYIF*SCLMTFSAFCWYLGSPVLCERAMNSSCSVPESARILSPLVHPGLWARP*ARFILL 818
GYIF*SC MTFSAF YLGSPVL ++A+NSSCSVPESARILSPLVHP L ARP*A+ I L
Sbjct: 281 GYIF*SCRMTFSAFS*YLGSPVLWDKAINSSCSVPESARILSPLVHPKL*ARP*AKLIEL 102
Query: 817 *GMPDVVSQAGKSRSVISLALSRNTLSPDRSY 722
*G+PDVVSQAG +RS IS A SRNTLSPD SY
Sbjct: 101 *GIPDVVSQAGNNRSAISFAFSRNTLSPDISY 6
Score = 310 bits (671), Expect = 2e-083
Identities = 138/214 (64%), Positives = 164/214 (76%)
Frame = -1 / -2
Query: 1358 LFCKIHNLL*FFWPVTRGT*GQHTRSKASKFIHLVRQRATILFTNVVVIRWCSFLG*T** 1179
LFCKIHNL FF P+TRG+ QHTR +A KFIHLVRQRAT ++ VIR CS G *
Sbjct: 642 LFCKIHNLFSFFRPITRGSKCQHTRGEACKFIHLVRQRATTFLADICVIRGCSLPGQAY* 463
Query: 1178 TFH*CLPHLSVVFYMLSFIPLDPDLEQIFVEAVSHSTKCDS*V*CCPRMRIYVNRQ*TIT 999
TFH*CLPHLSV+FY L FIPL+PDLEQ+ VEA+SHST+C *V*C +RIY++R+* +T
Sbjct: 462 TFH*CLPHLSVMFYALGFIPLNPDLEQVLVEAISHSTECYC*V*CLS*LRIYIDRK*AVT 283
Query: 998 WIYLLKLFNDVLRLLLVFGISSPL*KSYEFKLLRTRICKDTITVSPSRIMGSSMS*VYSI 819
WIYLLKL ND+ L L+ IS L +SY+FKLLR+RI KDTITV PS+IM S+MS*V I
Sbjct: 282 WIYLLKLSNDIFCL*LILRISGSLGQSYKFKLLRSRIRKDTITVGPSKIMSSAMS*VD*I 103
Query: 818 IRDARCCIPSR*ESICNIFSLIKKYFITR*IV*T 717
IRD RCCIP R*+SI NI L +KYF+T I+ T
Sbjct: 102 IRDTRCCIPGR*QSISNILRLFEKYFVTGHIICT 1
Score = 269 bits (581), Expect = 6e-071
Identities = 129/214 (60%), Positives = 154/214 (71%)
Frame = -3 / -1
Query: 1359 ALLQDS*FALIFLARNQRHLRPAYQEQSKQVHPSCQTTSHHSFHKCSSN*MV*FSWLNLI 1180
ALLQDS*F +F A NQR PAYQ +S QVHPSC+TTSHH + N* V*F+W +L+
Sbjct: 643 ALLQDS*FV*LFQAHNQRLQVPAYQGRSMQVHPSCETTSHHFSRRYMCN*RV*FAWSSLL 464
Query: 1179 DLPLMSPTFVCSVLHAQFYSPGSRP*ANIRRSCLP*HQM**LSMMLSQNEDLCK*AVNHH 1000
+LPLMSPTFVC+VL ++FYSP SRP*A+ RRS LP*H+M LSMML EDL +* V+ H
Sbjct: 463 NLPLMSPTFVCNVLRSRFYSPESRP*ASTRRSYLP*HRMLLLSMMLVLTEDLYR*EVSRH 284
Query: 999 LDISFEAV**RSPPSAGIWDLQSSVKEL*IQVAPYQNLQGYYHR*SIQDYGLVHELGLFY 820
LDIS EAV * P DL+ S +L*IQVAP+QN QGYYHR SIQ+Y L HEL
Sbjct: 283 LDISSEAVE*HFLPLVDT*DLRFSGTKL*IQVAPFQNPQGYYHRWSIQNYELGHELS*LN 104
Query: 819 YKGCQMLYPKQVRVDL*YL*PYQEILYHQIDRMN 718
YKG QMLYP+QV +D Y P++EIL H+ M+
Sbjct: 103 YKGYQMLYPRQVTIDQQYPSPFREILCHRTYHMH 2
Score = 264 bits (572), Expect = 1e-069
Identities = 126/205 (61%), Positives = 145/205 (70%)
Frame = +2 / +3
Query: 743 SIS**G*RYYRSTLTCLGYNIWHPL**NKPSSWTSP*SWMD*R**YPCRFWYGAT*IHSS 922
SIS G Y S +TCLGYNIW+PL* N+ SSW S * WMD R**YPC FW GAT*I+S
Sbjct: 27 SISRKGEGYC*SIVTCLGYNIWYPL*FNQLSSWPSS*FWMDQR**YPCGFWNGAT*IYSF 206
Query: 923 FTEDWRSQIPAEGGERH*TASKDISK*WFTAYLHKSSFWDSIILNYHIWCYGRQLLRIFA 1102
E+ RS + +G + H TAS+DISK* T+YL+KSS SIILN +I CYGR LLR+ A
Sbjct: 207 VPENRRS*VSTKGRKCHSTASEDISK*RLTSYLYKSSVRTSIILNNNIRCYGR*LLRVLA 386
Query: 1103 QGLDPGE*N*ACKTLQTNVGDINGRSIKFNQENYTIXXXXXXXKEWWLVV*QDG*TCLLC 1282
QGLD GE*N KTLQTNVGDINGR K +Q NYT+ ++WWLVV QDG*TC+L
Sbjct: 387 QGLDSGE*NRERKTLQTNVGDINGRFNKLDQANYTL*LHIYLREKWWLVVSQDG*TCMLR 566
Query: 1283 SWYAGLRCLWLRARKIRANYESCKR 1357
WYAG LWL A K NYESC+R
Sbjct: 567 PWYAGTWSLWLWA*KS*TNYESCRR 641
Score = 231 bits (499), Expect = 1e-059
Identities = 116/184 (63%), Positives = 127/184 (69%)
Frame = +1 / +2
Query: 718 VHTIYLVIKYFLIRLKILQIDSYLLGIQHLASLIIE*T*LMDEPIILDGLTVIVSLQILV 897
VH I V KYF R +IL ID YL GIQHL SLII+ T*LM E IILDG TVIVSL+IL
Sbjct: 2 VHMICPVTKYFSKRRRILLIDCYLPGIQHLVSLIIQST*LMAELIILDGPTVIVSLRILE 181
Query: 898 RSNLNS*LFHRGLEIPNXXXXXXXXLNSFKRYIQVMVYCLFT*ILILGQHHTQLSHLVLW 1077
RSNLN *L R EI + +SF+RYIQV Y L *IL +HHTQ H VLW
Sbjct: 182 RSNLNL*LCPREPEILSIN*RQKMSFDSFRRYIQVTAYFLSI*ILSQDKHHTQQ*HSVLW 361
Query: 1078 ETASTNICSRSGSRGIKLSM*NTTDKCGRHQWKVY*V*PRKLHHLITTTFVKRMVARCLT 1257
E AST+ CSRSG RGIK *N TDKCGRHQWKV * *P KLH LIT +++VARCLT
Sbjct: 362 EIASTSTCSRSGFRGIKPRA*NITDKCGRHQWKV**A*PGKLHPLITHISARKVVARCLT 541
Query: 1258 RWMN 1269
RWMN
Sbjct: 542 RWMN 553
>gb|CA012277.1|CA012277 HT04P11r HT Hordeum vulgare subsp. vulgare cDNA clone HT04P11
5-PRIME, mRNA sequence
Length = 527
Score = 391 bits (849), Expect = e-108
Identities = 158/170 (92%), Positives = 166/170 (97%)
Frame = +3 / +2
Query: 408 VVEIDPVNNEKREKVKEAMLHAWNSYVKYAWGMDELQPQSKNGINSFGGLGATLVDSLDT 587
+VEIDP+NNE+REKVKEAMLHAWNSYVKYAWGMDELQPQSKNG+NSFGGLGATLVDSLDT
Sbjct: 17 LVEIDPINNERREKVKEAMLHAWNSYVKYAWGMDELQPQSKNGVNSFGGLGATLVDSLDT 196
Query: 588 LYIMGLKDEFQKARDWVAESLDFDKDYDASVFETTIRVVGGLLSSYDLSGDKVFLDKAKD 767
LYIMGL+DEFQKARDWVAESL FDKDYDASVFETTIRVVGGLLS+YD+SGDKVFL+KAKD
Sbjct: 197 LYIMGLRDEFQKARDWVAESLSFDKDYDASVFETTIRVVGGLLSAYDMSGDKVFLEKAKD 376
Query: 768 ITDRLLPAWDTTSGIPYNRINLAHGRAHNPGWTNGDSILADSGTEQLEFI 917
I DRLLPAWDTTSGIPYN INLAHGRAHN GWTNGDSILADSGTEQLEFI
Sbjct: 377 IADRLLPAWDTTSGIPYNSINLAHGRAHNFGWTNGDSILADSGTEQLEFI 526
Score = 289 bits (625), Expect = 5e-077
Identities = 133/169 (78%), Positives = 138/169 (81%)
Frame = -2 / -3
Query: 916 MNSSCSVPESARILSPLVHPGLWARP*ARFILL*GMPDVVSQAGKSRSVISLALSRNTLS 737
+NSSCSVPESARILSPLVHP L ARP*A+ I L*G+PDVVSQAG +RS IS A SRNTLS
Sbjct: 525 INSSCSVPESARILSPLVHPKL*ARP*AKLIEL*GIPDVVSQAGNNRSAISFAFSRNTLS 346
Query: 736 PDRSYELSRPPTTLMVVXXXXXXXXXXXSNDSATQSLAF*NSSFRPIMYRVSSESTRVAP 557
PD SY L RPPTTLMVV NDSATQSLAF*NSS RPI+Y VSSESTRVAP
Sbjct: 345 PDISYALRRPPTTLMVVSKTLAS*SLSKLNDSATQSLAF*NSSLRPIIYSVSSESTRVAP 166
Query: 556 RPPKLLIPFFDCG*SSSIPQAYLT*EFQAWSIASLTFSRFSLLTGSIST 410
RPPKLL PFFDCG*SSSIP AY T*EFQAWSIASLTFS SLL GSIST
Sbjct: 165 RPPKLLTPFFDCG*SSSIPHAYFT*EFQAWSIASLTFSLLSLLIGSIST 19
Score = 243 bits (526), Expect = 2e-063
Identities = 112/169 (66%), Positives = 131/169 (77%)
Frame = -1 / -2
Query: 917 YEFKLLRTRICKDTITVSPSRIMGSSMS*VYSIIRDARCCIPSR*ESICNIFSLIKKYFI 738
Y+FKLLR+RI KDTITV PS+IM S+MS*V IIRD RCCIP R*+SI NI L +KYF+
Sbjct: 526 YKFKLLRSRIRKDTITVGPSKIMSSAMS*VD*IIRDTRCCIPGR*QSISNILRLFEKYFV 347
Query: 737 TR*IV*TKQTSNNPYGRFKNTRIIILVKV**LRHPVSSFLKFIFQAHYV*GIK*VNKGCS 558
T I+ T++TSNNPYGRFKN +IILVK **L HPVS FLK I AHY+ I V+KGC
Sbjct: 346 TGHIICTEETSNNPYGRFKNACVIILVKA**LCHPVSGFLKLIS*AHYIQCI*RVHKGCP 167
Query: 557 KTTKAVDTILRLWLKLVHSPGILNIRIPSMEHCLFNFFPFFIIDRINFY 411
+TTKA++TIL L LKL+HSP IL I IP MEH L + FP FII+RIN Y
Sbjct: 166 ETTKAINTIL*LRLKLIHSPCILYIGIPGMEHSLLDLFPPFIINRINLY 20
Score = 226 bits (488), Expect = 4e-058
Identities = 109/168 (64%), Positives = 123/168 (73%)
Frame = +2 / +1
Query: 413 RN*SCQ**KTGKS*RGNAPCLEFLC*VCLGNGRASATIEEWYQQLWWSWSNPC*LT*YPI 592
R+*S **K GK G APCLEFLC VC+GNG ASA I+EW LWWS NPC L Y +
Sbjct: 22 RD*SY***KEGKGQGGYAPCLEFLCKVCMGNG*ASAAIKEWC**LWWSRGNPCGLARYTV 201
Query: 593 HNGPER*ISES*RLGGGVIRL*QGL*CECF*NDHKGCWRSA*FIRSIW**SIS**G*RYY 772
+NGP+R*+SES RLGG VI+L*QGL* + F*NDHKGCWRS I + * SIS G Y
Sbjct: 202 YNGPKR*VSESQRLGGRVIKL*QGL*RKRF*NDHKGCWRSPQCI*YVR*QSISRKGEGYC 381
Query: 773 RSTLTCLGYNIWHPL**NKPSSWTSP*SWMD*R**YPCRFWYGAT*IH 916
S +TCLGYNIW+PL* N+ SSW S * WMD R**YPC FW GAT*I+
Sbjct: 382 *SIVTCLGYNIWYPL*FNQLSSWPSS*FWMDQR**YPCGFWNGAT*IY 525
Score = 225 bits (485), Expect = 1e-057
Identities = 103/169 (60%), Positives = 115/169 (68%)
Frame = -3 / -1
Query: 918 L*IQVAPYQNLQGYYHR*SIQDYGLVHELGLFYYKGCQMLYPKQVRVDL*YL*PYQEILY 739
L*IQVAP+QN QGYYHR SIQ+Y L HEL YKG QMLYP+QV +D Y P++EIL
Sbjct: 527 L*IQVAPFQNPQGYYHRWSIQNYELGHELS*LNYKGYQMLYPRQVTIDQQYPSPFREILC 348
Query: 738 HQIDRMN*ADLQQPLWSFQKHSHHNPCQXXXXXXXXXXXSEIHLSGPLCIGYQVSQQGLL 559
H+ M+* DLQQPLWSFQK HNPCQ SE HL GPL Y S QGL
Sbjct: 347 HRTYHMH*GDLQQPLWSFQKRLRHNPCQSLMTLPPSLWLSETHLLGPLYTVYLASPQGLP 168
Query: 558 QDHQSC*YHSSIVAEARPFPRHT*HKNSKHGALPL*LFPVFHY*QDQFL 412
+DHQS *+HS I AEA PFP HT H+NS+HGA P * FP FHY* DQ L
Sbjct: 167 RDHQSY*HHSLIAAEAHPFPMHTLHRNSRHGA*PP*PFPSFHY**DQSL 21
Score = 214 bits (462), Expect = 1e-054
Identities = 107/157 (68%), Positives = 117/157 (74%)
Frame = +1 / +3
Query: 442 GKKLKRQCSMLGILMLSMPGEWTSFSHNRRMVSTALVVLEQPLLTHLIPYT*WA*KMNFR 621
GK+ +R CSM GI M SM GEW SFS N+RMV ALVV QPL T I *WA*+M+FR
Sbjct: 51 GKRSRRLCSMPGIPM*SMHGEWMSFSRNQRMVLIALVVSGQPLWTR*IHCI*WA*EMSFR 230
Query: 622 KLETGWRSH*TLTRIMMRVFLKRP*GLLEVCLVHTIYLVIKYFLIRLKILQIDSYLLGIQ 801
K ETGW+SH* LTRIM + FLKRP*GLLEV VH I V KYF R +IL ID YL GIQ
Sbjct: 231 KPETGWQSH*ALTRIMTQAFLKRP*GLLEVSSVHMICPVTKYFSKRRRILLIDCYLPGIQ 410
Query: 802 HLASLIIE*T*LMDEPIILDGLTVIVSLQILVRSNLN 912
HL SLII+ T*LM E IILDG TVIVSL+IL RSNLN
Sbjct: 411 HLVSLIIQST*LMAELIILDGPTVIVSLRILERSNLN 521
>gb|BQ465790.1|BQ465790 HU04L04r HU Hordeum vulgare subsp. vulgare cDNA clone HU04L04
5-PRIME, mRNA sequence
Length = 597
Score = 250 bits (541), Expect(2) = 3e-095
Identities = 100/108 (92%), Positives = 107/108 (99%)
Frame = +3 / +1
Query: 408 VVEIDPVNNEKREKVKEAMLHAWNSYVKYAWGMDELQPQSKNGINSFGGLGATLVDSLDT 587
+VEIDP+NNE+REKVKEAMLHAWNSYVKYAWGMDELQPQSKNG+NSFGGLGATLVDSLDT
Sbjct: 274 LVEIDPINNERREKVKEAMLHAWNSYVKYAWGMDELQPQSKNGVNSFGGLGATLVDSLDT 453
Query: 588 LYIMGLKDEFQKARDWVAESLDFDKDYDASVFETTIRVVGGLLSSYDL 731
LYIMGL+DEFQKARDWVAESL FDKDYDASVFETTIRVVGGLLS+YD+
Sbjct: 454 LYIMGLRDEFQKARDWVAESLSFDKDYDASVFETTIRVVGGLLSAYDM 597
Score = 182 bits (392), Expect(2) = 7e-063
Identities = 83/106 (78%), Positives = 84/106 (79%)
Frame = -2 / -2
Query: 727 SYELSRPPTTLMVVXXXXXXXXXXXSNDSATQSLAF*NSSFRPIMYRVSSESTRVAPRPP 548
SY L RPPTTLMVV NDSATQSLAF*NSS RPI+Y VSSESTRVAPRPP
Sbjct: 593 SYALRRPPTTLMVVSKTLAS*SLSKLNDSATQSLAF*NSSLRPIIYSVSSESTRVAPRPP 414
Query: 547 KLLIPFFDCG*SSSIPQAYLT*EFQAWSIASLTFSRFSLLTGSIST 410
KLL PFFDCG*SSSIP AY T*EFQAWSIASLTFS SLL GSIST
Sbjct: 413 KLLTPFFDCG*SSSIPHAYFT*EFQAWSIASLTFSLLSLLIGSIST 276
Score = 150 bits (322), Expect(2) = 1e-040
Identities = 68/100 (68%), Positives = 77/100 (77%)
Frame = +2 / +3
Query: 413 RN*SCQ**KTGKS*RGNAPCLEFLC*VCLGNGRASATIEEWYQQLWWSWSNPC*LT*YPI 592
R+*S **K GK G APCLEFLC VC+GNG ASA I+EW LWWS NPC L Y +
Sbjct: 279 RD*SY***KEGKGQGGYAPCLEFLCKVCMGNG*ASAAIKEWC**LWWSRGNPCGLARYTV 458
Query: 593 HNGPER*ISES*RLGGGVIRL*QGL*CECF*NDHKGCWRS 712
+NGP+R*+SES RLGG VI+L*QGL* + F*NDHKGCWRS
Sbjct: 459 YNGPKR*VSESQRLGGRVIKL*QGL*RKRF*NDHKGCWRS 578
Score = 150 bits (322), Expect(2) = 2e-048
Identities = 69/106 (65%), Positives = 81/106 (76%)
Frame = -1 / -1
Query: 728 IV*TKQTSNNPYGRFKNTRIIILVKV**LRHPVSSFLKFIFQAHYV*GIK*VNKGCSKTT 549
I+ T++TSNNPYGRFKN +IILVK **L HPVS FLK I AHY+ I V+KGC +TT
Sbjct: 594 IICTEETSNNPYGRFKNACVIILVKA**LCHPVSGFLKLIS*AHYIQCI*RVHKGCPETT 415
Query: 548 KAVDTILRLWLKLVHSPGILNIRIPSMEHCLFNFFPFFIIDRINFY 411
KA++TIL L LKL+HSP IL I IP MEH L + FP FII+RIN Y
Sbjct: 414 KAINTIL*LRLKLIHSPCILYIGIPGMEHSLLDLFPPFIINRINLY 277
Score = 138 bits (296), Expect(2) = 1e-038
Identities = 63/104 (60%), Positives = 68/104 (65%)
Frame = -3 / -3
Query: 723 MN*ADLQQPLWSFQKHSHHNPCQXXXXXXXXXXXSEIHLSGPLCIGYQVSQQGLLQDHQS 544
M+* DLQQPLWSFQK HNPCQ SE HL GPL Y S QGL +DHQS
Sbjct: 589 MH*GDLQQPLWSFQKRLRHNPCQSLMTLPPSLWLSETHLLGPLYTVYLASPQGLPRDHQS 410
Query: 543 C*YHSSIVAEARPFPRHT*HKNSKHGALPL*LFPVFHY*QDQFL 412
*+HS I AEA PFP HT H+NS+HGA P * FP FHY* DQ L
Sbjct: 409 Y*HHSLIAAEAHPFPMHTLHRNSRHGA*PP*PFPSFHY**DQSL 278
Score = 135 bits (289), Expect(2) = 9e-036
Identities = 64/96 (66%), Positives = 71/96 (73%)
Frame = +1 / +2
Query: 442 GKKLKRQCSMLGILMLSMPGEWTSFSHNRRMVSTALVVLEQPLLTHLIPYT*WA*KMNFR 621
GK+ +R CSM GI M SM GEW SFS N+RMV ALVV QPL T I *WA*+M+FR
Sbjct: 308 GKRSRRLCSMPGIPM*SMHGEWMSFSRNQRMVLIALVVSGQPLWTR*IHCI*WA*EMSFR 487
Query: 622 KLETGWRSH*TLTRIMMRVFLKRP*GLLEVCLVHTI 729
K ETGW+SH* LTRIM + FLKRP*GLLEV VH I
Sbjct: 488 KPETGWQSH*ALTRIMTQAFLKRP*GLLEVSSVHMI 595
Score = 120 bits (256), Expect(2) = 3e-095
Identities = 47/81 (58%), Positives = 55/81 (67%)
Frame = +3 / +1
Query: 138 RRXXXXXXGTWRYLNPAYYLKRPKRXXXXXXXXXXXXXXXWDRQSLVSEYESEISRLEDD 317
R G WRYLNPAYYLKRPKR WDRQSLVSEYESEIS+L+++
Sbjct: 13 RSSSSSSSGAWRYLNPAYYLKRPKRLALLFFVFVAATFAFWDRQSLVSEYESEISQLKNE 192
Query: 318 INRLHDQLRKAGVNLDENPVV 380
IN+LH QLRKAG+ L+ENP +
Sbjct: 193 INQLHGQLRKAGIQLEENPAI 255
Score = 80.3 bits (169), Expect(2) = 7e-063
Identities = 38/60 (63%), Positives = 42/60 (70%)
Frame = -1 / -1
Query: 374 WIFIQINSSLS*LVMQPIYIIF*SGNLRLVLADERLAVPXXXXXXXXXXXXERQALGPLE 195
WIF Q+N+SL *L MQ +Y IF* GNLRLVLADERLAVP ER+ALGPLE
Sbjct: 249 WIFFQLNTSLP*LTMQLVYFIF*LGNLRLVLADERLAVPEGEGGGDEDEEEEREALGPLE 70
Score = 64.3 bits (134), Expect(2) = 2e-048
Identities = 29/39 (74%), Positives = 30/39 (76%)
Frame = -2 / -2
Query: 373 GFSSRLTPAFLSWSCNRFISSSNREISDSYSLTSDWRSQ 257
GFSS PAFL+ CN FIS N EISDSYSLTSDWRSQ
Sbjct: 248 GFSSS*IPAFLN*PCNWFISFFNWEISDSYSLTSDWRSQ 132
Score = 43.2 bits (88), Expect(2) = 1e-038
Identities = 19/29 (65%), Positives = 20/29 (68%)
Frame = -3 / -3
Query: 378 LLDFHPD*LQPFLAGHATDLYHLLIGKSQ 292
LLDF P QP L HAT L+H LIGKSQ
Sbjct: 253 LLDFLPVEYQPSLTDHATGLFHFLIGKSQ 167
Score = 37.7 bits (76), Expect(2) = 1e-040
Identities = 18/28 (64%), Positives = 19/28 (67%)
Frame = +1 / +2
Query: 292 LRFPD*KMI*IGCMTS*ERLELIWMKIQ 375
LRFP+*KM * CM S* RL W KIQ
Sbjct: 167 LRFPN*KMK*TSCMVS*GRLVFNWKKIQ 250
Score = 36.8 bits (74), Expect(2) = 9e-036
Identities = 16/21 (76%), Positives = 19/21 (90%)
Frame = +2 / +3
Query: 269 VARQRVRV*DFPIRR*YKSVA 331
+ARQRVRV*DFPI++* K VA
Sbjct: 144 IARQRVRV*DFPIKK*NKPVA 206
>gb|AV922784.1|AV922784 AV922784 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd2f24 5', mRNA sequence
Length = 643
Score = 147 bits (315), Expect(3) = 8e-069
Identities = 59/65 (90%), Positives = 63/65 (96%)
Frame = +3 / +2
Query: 1557 QAFEKNSRIESGYVGLRDVNTGEKDNMMQSFFLAETLKYLYLLFSPPSVISFDEWVFNTE 1736
+AFEKNSRI SGYVGLRDVN+GEKD+ MQSFFLAETLKYLYLLFSPPSV+SFDEWVFNTE
Sbjct: 449 EAFEKNSRIASGYVGLRDVNSGEKDDKMQSFFLAETLKYLYLLFSPPSVVSFDEWVFNTE 628
Query: 1737 AHPLR 1751
AHPLR
Sbjct: 629 AHPLR 643
Score = 127 bits (272), Expect(3) = 3e-048
Identities = 54/64 (84%), Positives = 58/64 (90%)
Frame = -2 / -2
Query: 1750 LNG*ASVLKTHSSKDMTDGGEKSRYRYFSVSARKKLCIMLSFSPVFTSLSPTYPDSMREF 1571
L G*ASVLKTHSSKD TDGGE +R RY SVSARKKLCI+ SFSP+FTSLSPTYPD+MREF
Sbjct: 642 LKG*ASVLKTHSSKDTTDGGENNR*RYLSVSARKKLCILSSFSPLFTSLSPTYPDAMREF 463
Query: 1570 FSNA 1559
FSNA
Sbjct: 462 FSNA 451
Score = 120 bits (256), Expect(3) = 8e-069
Identities = 47/81 (58%), Positives = 55/81 (67%)
Frame = +3 / +2
Query: 138 RRXXXXXXGTWRYLNPAYYLKRPKRXXXXXXXXXXXXXXXWDRQSLVSEYESEISRLEDD 317
R G WRYLNPAYYLKRPKR WDRQSLVSEYESEIS+L+++
Sbjct: 140 RSSSSSSSGAWRYLNPAYYLKRPKRLALLFFVFVAATFAFWDRQSLVSEYESEISQLKNE 319
Query: 318 INRLHDQLRKAGVNLDENPVV 380
IN+LH QLRKAG+ L+ENP +
Sbjct: 320 INQLHGQLRKAGIQLEENPAI 382
Score = 106 bits (227), Expect(2) = 2e-034
Identities = 45/74 (60%), Positives = 58/74 (78%)
Frame = -1 / -1
Query: 1751 SQWVSFSIENPLVEGYD*WRGEK*VQVLQRLCQEETLHHVVFFTSVHISQSHISRFYAGV 1572
SQ VSFS+E+PL+E YD* RGE+ ++VL+RLC EE LH VV FT++HI SH+SR YAGV
Sbjct: 643 SQRVSFSVEDPLIERYD*RRGEQQIEVLERLC*EEALHLVVLFTTIHIP*SHVSRCYAGV 464
Query: 1571 LLKCLEYVPPPILV 1530
LKCL + PP ++
Sbjct: 463 FLKCLLDLFPPFII 422
Score = 96.8 bits (205), Expect(2) = 2e-023
Identities = 41/64 (64%), Positives = 48/64 (75%)
Frame = +2 / +1
Query: 1559 GI*EELPHRIWICGTERCEHW*KRQHDAEFLPGRDAEVPVPTFLPSISHILRRVGFQY*S 1738
GI*E+LPH IWI GT+ CE W*K + DAE LP RDA+VP+ LPS+S I R VG Q+*S
Sbjct: 451 GI*EKLPHSIWIRGTKGCE*W*KGRQDAELLPSRDAQVPLSVVLPSVSRIFR*VGLQH*S 630
Query: 1739 SPIE 1750
SP E
Sbjct: 631 SPFE 642
Score = 89.0 bits (188), Expect(2) = 7e-021
Identities = 44/68 (64%), Positives = 48/68 (70%)
Frame = +1 / +3
Query: 1540 GGGTYSRHLRRTPA*NLDMWD*EM*TLVKKTT*CRVSSWQRR*STCTYFSPLHQSYPSTS 1719
GG RHLR+TPA*+LD WD* M* +VK+TT CR SS QRR ST SPL QSY S S
Sbjct: 432 GGKRSRRHLRKTPA*HLDTWD*GM*IVVKRTTRCRASS*QRRSSTSICCSPLRQSYLSMS 611
Query: 1720 GFSILKLT 1743
G S LKLT
Sbjct: 612 GSSTLKLT 635
Score = 87.2 bits (184), Expect(3) = 3e-025
Identities = 41/64 (64%), Positives = 45/64 (70%)
Frame = -3 / -3
Query: 1749 SMGELQY*KPTRRRI*LMEGRKVGTGTSASLPGRNSASCCLFHQCSHLSVPHIQILCGSS 1570
S GELQ *+PT R+I L EGR GT ASL GR+SASC FH SH VP IQ+LCGS
Sbjct: 641 SKGELQC*RPTHRKIRLTEGRTTDRGT*ASLLGRSSASCRPFHHYSHPLVPRIQMLCGSF 462
Query: 1569 SQMP 1558
SQMP
Sbjct: 461 SQMP 450
Score = 80.3 bits (169), Expect(3) = 3e-048
Identities = 38/60 (63%), Positives = 42/60 (70%)
Frame = -1 / -1
Query: 374 WIFIQINSSLS*LVMQPIYIIF*SGNLRLVLADERLAVPXXXXXXXXXXXXERQALGPLE 195
WIF Q+N+SL *L MQ +Y IF* GNLRLVLADERLAVP ER+ALGPLE
Sbjct: 376 WIFFQLNTSLP*LTMQLVYFIF*LGNLRLVLADERLAVPEGEGGGDEDEEEEREALGPLE 197
Score = 64.3 bits (134), Expect(2) = 2e-034
Identities = 29/39 (74%), Positives = 30/39 (76%)
Frame = -2 / -2
Query: 373 GFSSRLTPAFLSWSCNRFISSSNREISDSYSLTSDWRSQ 257
GFSS PAFL+ CN FIS N EISDSYSLTSDWRSQ
Sbjct: 375 GFSSS*IPAFLN*PCNWFISFFNWEISDSYSLTSDWRSQ 259
Score = 43.2 bits (88), Expect(3) = 3e-025
Identities = 19/29 (65%), Positives = 20/29 (68%)
Frame = -3 / -3
Query: 378 LLDFHPD*LQPFLAGHATDLYHLLIGKSQ 292
LLDF P QP L HAT L+H LIGKSQ
Sbjct: 380 LLDFLPVEYQPSLTDHATGLFHFLIGKSQ 294
Score = 40.5 bits (82), Expect(3) = 8e-069
Identities = 15/18 (83%), Positives = 18/18 (100%)
Frame = +3 / +2
Query: 408 VVEIDPVNNEKREKVKEA 461
+VEIDP+NNE+REKVKEA
Sbjct: 401 LVEIDPINNERREKVKEA 454
Score = 37.7 bits (76), Expect(2) = 2e-023
Identities = 18/28 (64%), Positives = 19/28 (67%)
Frame = +1 / +3
Query: 292 LRFPD*KMI*IGCMTS*ERLELIWMKIQ 375
LRFP+*KM * CM S* RL W KIQ
Sbjct: 294 LRFPN*KMK*TSCMVS*GRLVFNWKKIQ 377
Score = 36.8 bits (74), Expect(2) = 7e-021
Identities = 16/21 (76%), Positives = 19/21 (90%)
Frame = +2 / +1
Query: 269 VARQRVRV*DFPIRR*YKSVA 331
+ARQRVRV*DFPI++* K VA
Sbjct: 271 IARQRVRV*DFPIKK*NKPVA 333
Score = 30.9 bits (61), Expect(3) = 3e-048
Identities = 15/20 (75%), Positives = 16/20 (80%)
Frame = -2 / -2
Query: 469 WSIASLTFSRFSLLTGSIST 410
+S ASLTFS SLL GSIST
Sbjct: 462 FSNASLTFSLLSLLIGSIST 403
Score = 30.4 bits (60), Expect(3) = 3e-025
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -1 / -1
Query: 461 CLFNFFPFFIIDRINFY 411
CL + FP FII+RIN Y
Sbjct: 454 CLLDLFPPFIINRINLY 404
>gb|AV925225.1|AV925225 AV925225 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd22e21 5', mRNA sequence
Length = 563
Score = 120 bits (256), Expect(3) = 6e-052
Identities = 47/81 (58%), Positives = 55/81 (67%)
Frame = +3 / +3
Query: 138 RRXXXXXXGTWRYLNPAYYLKRPKRXXXXXXXXXXXXXXXWDRQSLVSEYESEISRLEDD 317
R G WRYLNPAYYLKRPKR WDRQSLVSEYESEIS+L+++
Sbjct: 129 RSSSSSSSGAWRYLNPAYYLKRPKRLALLFFVFVAATFAFWDRQSLVSEYESEISQLKNE 308
Query: 318 INRLHDQLRKAGVNLDENPVV 380
IN+LH QLRKAG+ L+ENP +
Sbjct: 309 INQLHGQLRKAGIQLEENPAI 371
Score = 90.0 bits (190), Expect(3) = 6e-052
Identities = 37/42 (88%), Positives = 40/42 (95%)
Frame = +3 / +3
Query: 1557 QAFEKNSRIESGYVGLRDVNTGEKDNMMQSFFLAETLKYLYL 1682
+AFEKNSRI SGYVGLRDVN+GEKD+ MQSFFLAETLKYLYL
Sbjct: 438 EAFEKNSRIASGYVGLRDVNSGEKDDKMQSFFLAETLKYLYL 563
Score = 85.4 bits (180), Expect(3) = 6e-036
Identities = 35/41 (85%), Positives = 38/41 (92%)
Frame = -2 / -2
Query: 1681 RYRYFSVSARKKLCIMLSFSPVFTSLSPTYPDSMREFFSNA 1559
R RY SVSARKKLCI+ SFSP+FTSLSPTYPD+MREFFSNA
Sbjct: 562 R*RYLSVSARKKLCILSSFSPLFTSLSPTYPDAMREFFSNA 440
Score = 80.3 bits (169), Expect(3) = 6e-036
Identities = 38/60 (63%), Positives = 42/60 (70%)
Frame = -1 / -1
Query: 374 WIFIQINSSLS*LVMQPIYIIF*SGNLRLVLADERLAVPXXXXXXXXXXXXERQALGPLE 195
WIF Q+N+SL *L MQ +Y IF* GNLRLVLADERLAVP ER+ALGPLE
Sbjct: 365 WIFFQLNTSLP*LTMQLVYFIF*LGNLRLVLADERLAVPEGEGGGDEDEEEEREALGPLE 186
Score = 73.0 bits (153), Expect(2) = 2e-024
Identities = 29/50 (58%), Positives = 38/50 (76%)
Frame = -1 / -1
Query: 1679 VQVLQRLCQEETLHHVVFFTSVHISQSHISRFYAGVLLKCLEYVPPPILV 1530
++VL+RLC EE LH VV FT++HI SH+SR YAGV LKCL + PP ++
Sbjct: 560 IEVLERLC*EEALHLVVLFTTIHIP*SHVSRCYAGVFLKCLLDLFPPFII 411
Score = 64.3 bits (134), Expect(2) = 2e-024
Identities = 29/39 (74%), Positives = 30/39 (76%)
Frame = -2 / -2
Query: 373 GFSSRLTPAFLSWSCNRFISSSNREISDSYSLTSDWRSQ 257
GFSS PAFL+ CN FIS N EISDSYSLTSDWRSQ
Sbjct: 364 GFSSS*IPAFLN*PCNWFISFFNWEISDSYSLTSDWRSQ 248
Score = 40.5 bits (82), Expect(3) = 6e-052
Identities = 15/18 (83%), Positives = 18/18 (100%)
Frame = +3 / +3
Query: 408 VVEIDPVNNEKREKVKEA 461
+VEIDP+NNE+REKVKEA
Sbjct: 390 LVEIDPINNERREKVKEA 443
Score = 30.9 bits (61), Expect(3) = 6e-036
Identities = 15/20 (75%), Positives = 16/20 (80%)
Frame = -2 / -2
Query: 469 WSIASLTFSRFSLLTGSIST 410
+S ASLTFS SLL GSIST
Sbjct: 451 FSNASLTFSLLSLLIGSIST 392
>gb|AV927504.1|AV927504 AV927504 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd2f24 3', mRNA sequence
Length = 698
Score = 153 bits (328), Expect(5) = 7e-050
Identities = 62/73 (84%), Positives = 67/73 (91%)
Frame = +3 / -1
Query: 1560 AFEKNSRIESGYVGLRDVNTGEKDNMMQSFFLAETLKYLYLLFSPPSVISFDEWVFNTEA 1739
AFEKNSRI SGYVGLR VN+GEKD+ MQSFFLAETLKYLYLLFSPPSV+SFDEWVFNTEA
Sbjct: 620 AFEKNSRIASGYVGLRXVNSGEKDDKMQSFFLAETLKYLYLLFSPPSVVSFDEWVFNTEA 441
Query: 1740 HPLRIVPVNDNKG 1778
HPLRIVP + + G
Sbjct: 440 HPLRIVPTHGSNG 402
Score = 138 bits (295), Expect(7) = 5e-050
Identities = 59/73 (80%), Positives = 63/73 (86%)
Frame = -2 / +1
Query: 1777 PLLSFTGTILNG*ASVLKTHSSKDMTDGGEKSRYRYFSVSARKKLCIMLSFSPVFTSLSP 1598
PLL GTIL G*ASVLKTHSSKD TDGGE +R RY SVSARKKLCI+ SFSP+FT LSP
Sbjct: 403 PLLPCVGTILKG*ASVLKTHSSKDTTDGGENNR*RYLSVSARKKLCILSSFSPLFTXLSP 582
Query: 1597 TYPDSMREFFSNA 1559
TYPD+MREFFSNA
Sbjct: 583 TYPDAMREFFSNA 621
Score = 107 bits (229), Expect(2) = 7e-023
Identities = 45/76 (59%), Positives = 59/76 (77%)
Frame = -1 / +3
Query: 1757 NNSQWVSFSIENPLVEGYD*WRGEK*VQVLQRLCQEETLHHVVFFTSVHISQSHISRFYA 1578
N+SQ VSFS+E+PL+E YD* RGE+ ++VL+RLC EE LH VV FT++H SH+SR YA
Sbjct: 423 NDSQRVSFSVEDPLIERYD*RRGEQQIEVLERLC*EEALHLVVLFTTIHXP*SHVSRCYA 602
Query: 1577 GVLLKCLEYVPPPILV 1530
GV LKCL + PP ++
Sbjct: 603 GVFLKCLLDLFPPFII 650
Score = 100 bits (213), Expect(2) = 7e-024
Identities = 43/67 (64%), Positives = 50/67 (74%)
Frame = +2 / -3
Query: 1559 GI*EELPHRIWICGTERCEHW*KRQHDAEFLPGRDAEVPVPTFLPSISHILRRVGFQY*S 1738
GI*E+LPH IWI GT+ CE W*K + DAE LP RDA+VP+ LPS+S I R VG Q+*S
Sbjct: 621 GI*EKLPHSIWIRGTKXCE*W*KGRQDAELLPSRDAQVPLSVVLPSVSRIFR*VGLQH*S 442
Query: 1739 SPIENCS 1759
SP EN S
Sbjct: 441 SPFENRS 421
Score = 100 bits (212), Expect(5) = 2e-029
Identities = 45/71 (63%), Positives = 51/71 (71%)
Frame = -3 / +2
Query: 1770 YHLLEQFSMGELQY*KPTRRRI*LMEGRKVGTGTSASLPGRNSASCCLFHQCSHLSVPHI 1591
YH+ E+FS GELQ *+PT R+I L EGR GT ASL GR+SASC FH SH VP I
Sbjct: 410 YHVSERFSKGELQC*RPTHRKIRLTEGRTTDRGT*ASLLGRSSASCRPFHHYSHXLVPRI 589
Query: 1590 QILCGSSSQMP 1558
Q+LCGS SQMP
Sbjct: 590 QMLCGSFSQMP 622
Score = 95.0 bits (201), Expect(2) = 1e-021
Identities = 48/77 (62%), Positives = 54/77 (70%)
Frame = +1 / -2
Query: 1540 GGGTYSRHLRRTPA*NLDMWD*EM*TLVKKTT*CRVSSWQRR*STCTYFSPLHQSYPSTS 1719
GG RHLR+TPA*+LD WD* M* +VK+TT CR SS QRR ST SPL QSY S S
Sbjct: 640 GGKRSXRHLRKTPA*HLDTWD*GM*IVVKRTTRCRASS*QRRSSTSICCSPLRQSYLSMS 461
Query: 1720 GFSILKLTH*ELFQ*MI 1770
G S LKLT *E F+ M+
Sbjct: 460 GSSTLKLTL*ESFRHMV 410
Score = 41.4 bits (84), Expect(5) = 7e-050
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +1 / -1
Query: 2068 CIVDV*HTSNSLSICCCFPG 2127
CI+D+ H N +SICCCFPG
Sbjct: 86 CIIDLQHICNLVSICCCFPG 27
Score = 37.7 bits (76), Expect(5) = 7e-050
Identities = 14/18 (77%), Positives = 17/18 (94%)
Frame = +3 / -1
Query: 408 VVEIDPVNNEKREKVKEA 461
+VEIDP+NNE+REKVK A
Sbjct: 671 LVEIDPINNERREKVKXA 618
Score = 37.3 bits (75), Expect(7) = 5e-050
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = -1 / +1
Query: 2126 PGKQQHMDSELDVCYTSTMH 2067
PGKQQHMD++L +C S MH
Sbjct: 28 PGKQQHMDTKLHMCCKSMMH 87
Score = 35.4 bits (71), Expect(2) = 7e-024
Identities = 13/20 (65%), Positives = 17/20 (85%)
Frame = +2 / -2
Query: 2069 ALLMCSIHLTHCPYVVAFLG 2128
A L+C+ ++T CPYVVAFLG
Sbjct: 85 ASLICNTYVT*CPYVVAFLG 26
Score = 35.0 bits (70), Expect(5) = 2e-029
Identities = 14/23 (60%), Positives = 19/23 (82%)
Frame = -3 / +3
Query: 2136 RRAPRKATTYGQ*VRCMLHINNA 2068
+++PRKATTYG *V +L IN+A
Sbjct: 18 QKSPRKATTYGH*VTYVLQINDA 86
Score = 33.6 bits (67), Expect(2) = 1e-021
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = +3 / -3
Query: 2067 VHC*CVAYI*LTVHMLLLSWG 2129
VH * ++*L+VHMLLLSWG
Sbjct: 87 VHH*FATHM*LSVHMLLLSWG 25
Score = 31.8 bits (63), Expect(7) = 5e-050
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -2 / +1
Query: 1837 IQGYSGFPCFLPNCRT 1790
+Q Y FPCFLPN RT
Sbjct: 328 VQAYPCFPCFLPNGRT 375
Score = 30.4 bits (60), Expect(7) = 5e-050
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -1 / +3
Query: 461 CLFNFFPFFIIDRINFY 411
CL + FP FII+RIN Y
Sbjct: 618 CLLDLFPPFIINRINLY 668
Score = 29.9 bits (59), Expect(7) = 5e-050
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2 / +3
Query: 1894 NTSTGRSESDGGFKNPLLYIQGYSGFP 1814
++ GRS+S GG KNPL+ FP
Sbjct: 270 HSQQGRSQSHGGCKNPLICCSSLPLFP 350
Score = 29.5 bits (58), Expect(7) = 5e-050
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -3 / +2
Query: 2022 LLTSRRSLPRI*HHPLPMIFALNNLSP*FLTLTASGRKFPR 1900
++ SR S+P+I HH LP I S L A+GR R
Sbjct: 140 VILSRFSMPQIIHHALPTIVLPK*PSTVICNLAAAGRNSHR 262
Score = 29.0 bits (57), Expect(5) = 2e-029
Identities = 14/20 (70%), Positives = 15/20 (75%)
Frame = -2 / +1
Query: 469 WSIASLTFSRFSLLTGSIST 410
+S A LTFS SLL GSIST
Sbjct: 610 FSNAXLTFSLLSLLIGSIST 669
Score = 26.7 bits (52), Expect(5) = 7e-050
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +3 / -2
Query: 1848 GFLNPPSDSDLP 1883
GFL+PP D DLP
Sbjct: 316 GFLHPPCDCDLP 281
Score = 26.7 bits (52), Expect(5) = 2e-029
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3 / +1
Query: 1884 QGGQNQTADSKIHCSISKVTQAFPVF 1807
+ G N TAD+KI S+ + FP F
Sbjct: 280 KAGHNHTADAKIL*SVVQAYPCFPCF 357
Score = 24.9 bits (48), Expect(2) = 7e-023
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -2 / +2
Query: 2116 NNIWTVS*MYATHQQCT 2066
NNIWT+S + +Q CT
Sbjct: 38 NNIWTLSYICVANQ*CT 88
Score = 24.0 bits (46), Expect(5) = 7e-050
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +3 / -1
Query: 1791 VRQFGRKQGK 1820
VR FGRKQGK
Sbjct: 374 VRPFGRKQGK 345
Score = 21.7 bits (41), Expect(5) = 2e-029
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = -1 / +2
Query: 2054 KQIQR*KLLWG 2022
+Q++R*KL WG
Sbjct: 95 RQVRR*KLSWG 127
Score = 21.7 bits (41), Expect(7) = 5e-050
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -3 / +1
Query: 2061 GA*ANPKIKASMGLL 2017
GA* + K+K MGLL
Sbjct: 88 GA*TSSKVKTFMGLL 132
>gb|CA012050.1|CA012050 HT04E19r HT Hordeum vulgare subsp. vulgare cDNA clone HT04E19
5-PRIME, mRNA sequence
Length = 496
Score = 120 bits (256), Expect(2) = 3e-049
Identities = 47/81 (58%), Positives = 55/81 (67%)
Frame = +3 / +3
Query: 138 RRXXXXXXGTWRYLNPAYYLKRPKRXXXXXXXXXXXXXXXWDRQSLVSEYESEISRLEDD 317
R G WRYLNPAYYLKRPKR WDRQSLVSEYESEIS+L+++
Sbjct: 117 RSSSSSSSGAWRYLNPAYYLKRPKRLALLFFVFVAATFAFWDRQSLVSEYESEISQLKNE 296
Query: 318 INRLHDQLRKAGVNLDENPVV 380
IN+LH QLRKAG+ L+ENP +
Sbjct: 297 INQLHGQLRKAGIQLEENPAI 359
Score = 96.8 bits (205), Expect(2) = 3e-049
Identities = 36/39 (92%), Positives = 39/39 (100%)
Frame = +3 / +3
Query: 408 VVEIDPVNNEKREKVKEAMLHAWNSYVKYAWGMDELQPQ 524
+VEIDP+NNE+REKVKEAMLHAWNSYVKYAWGMDELQPQ
Sbjct: 378 LVEIDPINNERREKVKEAMLHAWNSYVKYAWGMDELQPQ 494
Score = 80.3 bits (169), Expect(2) = 4e-031
Identities = 38/60 (63%), Positives = 42/60 (70%)
Frame = -1 / -3
Query: 374 WIFIQINSSLS*LVMQPIYIIF*SGNLRLVLADERLAVPXXXXXXXXXXXXERQALGPLE 195
WIF Q+N+SL *L MQ +Y IF* GNLRLVLADERLAVP ER+ALGPLE
Sbjct: 353 WIFFQLNTSLP*LTMQLVYFIF*LGNLRLVLADERLAVPEGEGGGDEDEEEEREALGPLE 174
Score = 76.2 bits (160), Expect(2) = 4e-031
Identities = 34/39 (87%), Positives = 34/39 (87%)
Frame = -2 / -1
Query: 526 DCG*SSSIPQAYLT*EFQAWSIASLTFSRFSLLTGSIST 410
DCG*SSSIP AY T*EFQAWSIASLTFS SLL GSIST
Sbjct: 496 DCG*SSSIPHAYFT*EFQAWSIASLTFSLLSLLIGSIST 380
Score = 64.3 bits (134), Expect(2) = 1e-021
Identities = 29/39 (74%), Positives = 30/39 (76%)
Frame = -2 / -1
Query: 373 GFSSRLTPAFLSWSCNRFISSSNREISDSYSLTSDWRSQ 257
GFSS PAFL+ CN FIS N EISDSYSLTSDWRSQ
Sbjct: 352 GFSSS*IPAFLN*PCNWFISFFNWEISDSYSLTSDWRSQ 236
Score = 60.2 bits (125), Expect(2) = 1e-021
Identities = 26/38 (68%), Positives = 28/38 (73%)
Frame = -3 / -2
Query: 525 IVAEARPFPRHT*HKNSKHGALPL*LFPVFHY*QDQFL 412
I AEA PFP HT H+NS+HGA P * FP FHY* DQ L
Sbjct: 495 IAAEAHPFPMHTLHRNSRHGA*PP*PFPSFHY**DQSL 382
>gb|AV930376.1|AV930376 AV930376 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd22e21 3', mRNA sequence
Length = 630
Score = 157 bits (337), Expect(4) = 1e-045
Identities = 63/74 (85%), Positives = 69/74 (93%)
Frame = +3 / -3
Query: 1557 QAFEKNSRIESGYVGLRDVNTGEKDNMMQSFFLAETLKYLYLLFSPPSVISFDEWVFNTE 1736
+AFEKNSRI SGYVGLRDVN+GEKD+ MQSFFLAETLKYLYLLFSPPSV+SFDEWVFNTE
Sbjct: 622 EAFEKNSRIASGYVGLRDVNSGEKDDKMQSFFLAETLKYLYLLFSPPSVVSFDEWVFNTE 443
Query: 1737 AHPLRIVPVNDNKG 1778
AHPLRIVP + + G
Sbjct: 442 AHPLRIVPTHGSNG 401
Score = 139 bits (299), Expect(5) = 2e-048
Identities = 60/73 (82%), Positives = 64/73 (87%)
Frame = -2 / +3
Query: 1777 PLLSFTGTILNG*ASVLKTHSSKDMTDGGEKSRYRYFSVSARKKLCIMLSFSPVFTSLSP 1598
PLL GTIL G*ASVLKTHSSKD TDGGE +R RY SVSARKKLCI+ SFSP+FTSLSP
Sbjct: 402 PLLPCVGTILKG*ASVLKTHSSKDTTDGGENNR*RYLSVSARKKLCILSSFSPLFTSLSP 581
Query: 1597 TYPDSMREFFSNA 1559
TYPD+MREFFSNA
Sbjct: 582 TYPDAMREFFSNA 620
Score = 105 bits (224), Expect(4) = 6e-028
Identities = 44/67 (65%), Positives = 55/67 (82%)
Frame = -1 / +2
Query: 1757 NNSQWVSFSIENPLVEGYD*WRGEK*VQVLQRLCQEETLHHVVFFTSVHISQSHISRFYA 1578
N+SQ VSFS+E+PL+E YD* RGE+ ++VL+RLC EE LH VV FT++HI SH+SR YA
Sbjct: 422 NDSQRVSFSVEDPLIERYD*RRGEQQIEVLERLC*EEALHLVVLFTTIHIP*SHVSRCYA 601
Query: 1577 GVLLKCL 1557
GV LKCL
Sbjct: 602 GVFLKCL 622
Score = 100 bits (212), Expect(2) = 9e-024
Identities = 43/67 (64%), Positives = 50/67 (74%)
Frame = +2 / -2
Query: 1559 GI*EELPHRIWICGTERCEHW*KRQHDAEFLPGRDAEVPVPTFLPSISHILRRVGFQY*S 1738
GI*E+LPH IWI GT+ CE W*K + DAE LP RDA+VP+ LPS+S I R VG Q+*S
Sbjct: 620 GI*EKLPHSIWIRGTKGCE*W*KGRQDAELLPSRDAQVPLSVVLPSVSRIFR*VGLQH*S 441
Query: 1739 SPIENCS 1759
SP EN S
Sbjct: 440 SPFENRS 420
Score = 99.1 bits (210), Expect(3) = 7e-021
Identities = 45/71 (63%), Positives = 51/71 (71%)
Frame = -3 / +1
Query: 1770 YHLLEQFSMGELQY*KPTRRRI*LMEGRKVGTGTSASLPGRNSASCCLFHQCSHLSVPHI 1591
YH+ E+FS GELQ *+PT R+I L EGR GT ASL GR+SASC FH SH VP I
Sbjct: 409 YHVSERFSKGELQC*RPTHRKIRLTEGRTTDRGT*ASLLGRSSASCRPFHHYSHPLVPRI 588
Query: 1590 QILCGSSSQMP 1558
Q+LCGS SQMP
Sbjct: 589 QMLCGSFSQMP 621
Score = 91.8 bits (194), Expect(2) = 9e-021
Identities = 46/71 (64%), Positives = 52/71 (73%)
Frame = +1 / -1
Query: 1558 RHLRRTPA*NLDMWD*EM*TLVKKTT*CRVSSWQRR*STCTYFSPLHQSYPSTSGFSILK 1737
RHLR+TPA*+LD WD* M* +VK+TT CR SS QRR ST SPL QSY S SG S LK
Sbjct: 621 RHLRKTPA*HLDTWD*GM*IVVKRTTRCRASS*QRRSSTSICCSPLRQSYLSMSGSSTLK 442
Query: 1738 LTH*ELFQ*MI 1770
LT *E F+ M+
Sbjct: 441 LTL*ESFRHMV 409
Score = 41.4 bits (84), Expect(4) = 1e-045
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +1 / -3
Query: 2068 CIVDV*HTSNSLSICCCFPG 2127
CI+D+ H N +SICCCFPG
Sbjct: 85 CIIDLQHICNLVSICCCFPG 26
Score = 37.3 bits (75), Expect(5) = 2e-048
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = -1 / +3
Query: 2126 PGKQQHMDSELDVCYTSTMH 2067
PGKQQHMD++L +C S MH
Sbjct: 27 PGKQQHMDTKLHMCCKSMMH 86
Score = 35.4 bits (71), Expect(2) = 9e-024
Identities = 13/20 (65%), Positives = 17/20 (85%)
Frame = +2 / -1
Query: 2069 ALLMCSIHLTHCPYVVAFLG 2128
A L+C+ ++T CPYVVAFLG
Sbjct: 84 ASLICNTYVT*CPYVVAFLG 25
Score = 35.0 bits (70), Expect(4) = 6e-028
Identities = 14/23 (60%), Positives = 19/23 (82%)
Frame = -3 / +2
Query: 2136 RRAPRKATTYGQ*VRCMLHINNA 2068
+++PRKATTYG *V +L IN+A
Sbjct: 17 QKSPRKATTYGH*VTYVLQINDA 85
Score = 33.6 bits (67), Expect(2) = 9e-021
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = +3 / -2
Query: 2067 VHC*CVAYI*LTVHMLLLSWG 2129
VH * ++*L+VHMLLLSWG
Sbjct: 86 VHH*FATHM*LSVHMLLLSWG 24
Score = 31.8 bits (63), Expect(5) = 2e-048
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -2 / +3
Query: 1837 IQGYSGFPCFLPNCRT 1790
+Q Y FPCFLPN RT
Sbjct: 327 VQAYPCFPCFLPNGRT 374
Score = 29.9 bits (59), Expect(5) = 2e-048
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2 / +2
Query: 1894 NTSTGRSESDGGFKNPLLYIQGYSGFP 1814
++ GRS+S GG KNPL+ FP
Sbjct: 269 HSQQGRSQSHGGCKNPLICCSSLPLFP 349
Score = 29.5 bits (58), Expect(5) = 2e-048
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -3 / +1
Query: 2022 LLTSRRSLPRI*HHPLPMIFALNNLSP*FLTLTASGRKFPR 1900
++ SR S+P+I HH LP I S L A+GR R
Sbjct: 139 VILSRFSMPQIIHHALPTIVLPK*PSTVICNLAAAGRNSHR 261
Score = 26.7 bits (52), Expect(4) = 1e-045
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +3 / -1
Query: 1848 GFLNPPSDSDLP 1883
GFL+PP D DLP
Sbjct: 315 GFLHPPCDCDLP 280
Score = 26.7 bits (52), Expect(4) = 6e-028
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3 / +3
Query: 1884 QGGQNQTADSKIHCSISKVTQAFPVF 1807
+ G N TAD+KI S+ + FP F
Sbjct: 279 KAGHNHTADAKIL*SVVQAYPCFPCF 356
Score = 24.9 bits (48), Expect(3) = 7e-021
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -2 / +1
Query: 2116 NNIWTVS*MYATHQQCT 2066
NNIWT+S + +Q CT
Sbjct: 37 NNIWTLSYICVANQ*CT 87
Score = 24.0 bits (46), Expect(4) = 1e-045
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +3 / -3
Query: 1791 VRQFGRKQGK 1820
VR FGRKQGK
Sbjct: 373 VRPFGRKQGK 344
Score = 21.7 bits (41), Expect(3) = 7e-021
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = -1 / +1
Query: 2054 KQIQR*KLLWG 2022
+Q++R*KL WG
Sbjct: 94 RQVRR*KLSWG 126
Score = 21.7 bits (41), Expect(4) = 6e-028
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -3 / +3
Query: 2061 GA*ANPKIKASMGLL 2017
GA* + K+K MGLL
Sbjct: 87 GA*TSSKVKTFMGLL 131
>gb|AV919436.1|AV919436 AV919436 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags6a10 3', mRNA sequence
Length = 678
Score = 71.6 bits (150), Expect(3) = 7e-032
Identities = 26/43 (60%), Positives = 35/43 (81%)
Frame = +3 / -2
Query: 1464 NILRPETVESLMYLWRLTGNKTYQDWGWDIFQAFEKNSRIESG 1592
N+LRPETVESL L R+T + Y++WGW IFQAFEK ++++SG
Sbjct: 404 NLLRPETVESLFVLHRITEDPKYREWGWQIFQAFEKYTKVDSG 276
Score = 70.3 bits (147), Expect(3) = 7e-032
Identities = 25/41 (60%), Positives = 34/41 (82%)
Frame = +3 / -2
Query: 1638 MQSFFLAETLKYLYLLFSPPSVISFDEWVFNTEAHPLRIVP 1760
M++FFL ETLKYLYLLF +++ D++VFNTEAHPL ++P
Sbjct: 221 METFFLGETLKYLYLLFGESNILPLDKYVFNTEAHPLPVIP 99
Score = 35.0 bits (70), Expect(3) = 7e-032
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +3 / -2
Query: 1341 MNLAKELARTCYNFYQTTPTKLAGENYFFH 1430
+ LA++LA+TC Y T T LA E +FH
Sbjct: 584 LQLAEDLAKTCVEMYFVTSTGLAPEIAYFH 495
>gb|BF621599.1|BF621599 HVSMEa0011J02f Hordeum vulgare seedling shoot EST library HVcDNA0001
(Cold stress) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEa0011J02f, mRNA sequence
Length = 809
Score = 71.6 bits (150), Expect(3) = 1e-029
Identities = 26/43 (60%), Positives = 35/43 (81%)
Frame = +3 / +3
Query: 1464 NILRPETVESLMYLWRLTGNKTYQDWGWDIFQAFEKNSRIESG 1592
N+LRPETVESL L R+T + Y++WGW IFQAFEK ++++SG
Sbjct: 219 NLLRPETVESLFVLHRITEDPKYREWGWQIFQAFEKYTKVDSG 347
Score = 62.9 bits (131), Expect(3) = 1e-029
Identities = 24/53 (45%), Positives = 35/53 (66%)
Frame = +3 / +3
Query: 1638 MQSFFLAETLKYLYLLFSPPSVISFDEWVFNTEAHPLRIVPVNDNKGIGTPVR 1796
M++FFL ET KYLY LF ++++ D+ V NTEAHPL ++P + I +R
Sbjct: 402 METFFLGETSKYLYSLFGESTILTLDKCVLNTEAHPLTVIPSEEQFHIPISIR 560
Score = 35.0 bits (70), Expect(3) = 1e-029
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +3 / +3
Query: 1341 MNLAKELARTCYNFYQTTPTKLAGENYFFH 1430
+ LA++LA+TC Y T T LA E +FH
Sbjct: 39 LQLAEDLAKTCVEMYFVTSTGLAPEIAYFH 128
>gb|CV062923.1|CV062923 BNEL84f3 Barley EST endosperm library Hordeum vulgare subsp. vulgare
cDNA clone BNEL84f3 5' similar to putative
alpha-mannosidase, mRNA sequence
Length = 638
Score = 71.2 bits (149), Expect(4) = 2e-028
Identities = 26/43 (60%), Positives = 34/43 (79%)
Frame = +3 / +3
Query: 1464 NILRPETVESLMYLWRLTGNKTYQDWGWDIFQAFEKNSRIESG 1592
N+LRPETVESL L R+T + Y +WGW IFQAFEK ++++SG
Sbjct: 396 NLLRPETVESLFVLHRITEDPKYMEWGWQIFQAFEKYTKVDSG 524
Score = 39.1 bits (79), Expect(4) = 2e-028
Identities = 15/23 (65%), Positives = 17/23 (73%)
Frame = +3 / +3
Query: 1242 GSLSDKMDELACFAPGMLALGAS 1310
G+ S KMD L CF PG LALGA+
Sbjct: 84 GAFSPKMDHLVCFLPGTLALGAT 152
Score = 37.3 bits (75), Expect(4) = 2e-028
Identities = 14/17 (82%), Positives = 16/17 (94%)
Frame = +3 / +3
Query: 1638 MQSFFLAETLKYLYLLF 1688
M++FFL ETLKYLYLLF
Sbjct: 579 METFFLGETLKYLYLLF 629
Score = 35.0 bits (70), Expect(4) = 2e-028
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +3 / +3
Query: 1341 MNLAKELARTCYNFYQTTPTKLAGENYFFH 1430
+ LA++LA+TC Y T T LA E +FH
Sbjct: 216 LQLAEDLAKTCVEMYFVTSTGLAPEIAYFH 305
>gb|AV914404.1|AV914404 AV914404 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags6a10 5', mRNA sequence
Length = 672
Score = 71.6 bits (150), Expect(4) = 8e-027
Identities = 26/43 (60%), Positives = 35/43 (81%)
Frame = +3 / +1
Query: 1464 NILRPETVESLMYLWRLTGNKTYQDWGWDIFQAFEKNSRIESG 1592
N+LRPETVESL L R+T + Y++WGW IFQAFEK ++++SG
Sbjct: 508 NLLRPETVESLFVLHRITEDPKYREWGWQIFQAFEKYTKVDSG 636
Score = 39.6 bits (80), Expect(4) = 8e-027
Identities = 14/20 (70%), Positives = 17/20 (85%)
Frame = +3 / +3
Query: 1068 GAMGDSFYEYLLKVWIQGNK 1127
G+ GDS+YEYLLKVW+Q K
Sbjct: 3 GSRGDSYYEYLLKVWMQQXK 62
Score = 39.1 bits (79), Expect(4) = 8e-027
Identities = 15/23 (65%), Positives = 17/23 (73%)
Frame = +3 / +1
Query: 1242 GSLSDKMDELACFAPGMLALGAS 1310
G+ S KMD L CF PG LALGA+
Sbjct: 196 GAFSPKMDHLVCFLPGTLALGAT 264
Score = 35.0 bits (70), Expect(4) = 8e-027
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +3 / +1
Query: 1341 MNLAKELARTCYNFYQTTPTKLAGENYFFH 1430
+ LA++LA+TC Y T T LA E +FH
Sbjct: 328 LQLAEDLAKTCVEMYFVTSTGLAPEIAYFH 417
>gb|BU987349.1|BU987349 HF14I07r HF Hordeum vulgare subsp. vulgare cDNA clone HF14I07
5-PRIME, mRNA sequence
Length = 576
Score = 96.8 bits (205), Expect(2) = 2e-024
Identities = 40/84 (47%), Positives = 58/84 (69%)
Frame = +3 / +3
Query: 867 NGDSILADSGTEQLEFIALSQRTGDPKYQQKAENVIKQLQKIYPSDGLLPIYINPHSGTA 1046
+G S +++ T QLEF LS+ +GDPKY + V++ ++ + +GL+PIYINP+SG
Sbjct: 312 DGLSSTSEATTLQLEFSYLSRISGDPKYDSETMKVLEHMRTLPTVEGLVPIYINPYSGQF 491
Query: 1047 SYSTITFGAMGDSFYEYLLKVWIQ 1118
S I G+ GDS+YEYLLKVW+Q
Sbjct: 492 SGENIRLGSRGDSYYEYLLKVWMQ 563
Score = 40.5 bits (82), Expect(2) = 2e-024
Identities = 16/21 (76%), Positives = 20/21 (95%)
Frame = +3 / +3
Query: 675 SVFETTIRVVGGLLSSYDLSG 737
++FETTIRV+GGLLS+Y LSG
Sbjct: 66 NLFETTIRVLGGLLSAYHLSG 128
>gb|BQ663940.1|BQ663940 HU04L04u HU Hordeum vulgare subsp. vulgare cDNA clone HU04L04
3-PRIME, mRNA sequence
Length = 559
Score = 84.5 bits (178), Expect(4) = 3e-021
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +3 / -2
Query: 1665 LKYLYLLFSPPSVISFDEWVFNTEAHPLRIVPVNDNKG 1778
LKYLYLLFSPPSV+SFDEWVFNTEAHPLRIVP + + G
Sbjct: 558 LKYLYLLFSPPSVVSFDEWVFNTEAHPLRIVPTHGSNG 445
Score = 65.2 bits (136), Expect(5) = 6e-024
Identities = 29/38 (76%), Positives = 30/38 (78%)
Frame = -2 / +2
Query: 1777 PLLSFTGTILNG*ASVLKTHSSKDMTDGGEKSRYRYFS 1664
PLL GTIL G*ASVLKTHSSKD TDGGE +R RY S
Sbjct: 446 PLLPCVGTILKG*ASVLKTHSSKDTTDGGENNR*RYLS 559
Score = 31.8 bits (63), Expect(5) = 6e-024
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -2 / +2
Query: 1837 IQGYSGFPCFLPNCRT 1790
+Q Y FPCFLPN RT
Sbjct: 371 VQAYPCFPCFLPNGRT 418
Score = 29.9 bits (59), Expect(4) = 3e-021
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = +1 / -1
Query: 2095 NSLSICCCFPG 2127
N +SICCCFPG
Sbjct: 103 NLVSICCCFPG 71
Score = 29.9 bits (59), Expect(5) = 6e-024
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2 / +1
Query: 1894 NTSTGRSESDGGFKNPLLYIQGYSGFP 1814
++ GRS+S GG KNPL+ FP
Sbjct: 313 HSQQGRSQSHGGCKNPLICCSSLPLFP 393
Score = 29.5 bits (58), Expect(5) = 6e-024
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -3 / +3
Query: 2022 LLTSRRSLPRI*HHPLPMIFALNNLSP*FLTLTASGRKFPR 1900
++ SR S+P+I HH LP I S L A+GR R
Sbjct: 183 VILSRFSMPQIIHHALPTIVLPK*PSTVICNLAAAGRNSHR 305
Score = 27.2 bits (53), Expect(5) = 6e-024
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = -3 / +2
Query: 2136 RRAPRKATTYGQ*V 2095
+++PRKATTYG *V
Sbjct: 62 QKSPRKATTYGH*V 103
Score = 26.7 bits (52), Expect(4) = 3e-021
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +3 / -3
Query: 1848 GFLNPPSDSDLP 1883
GFL+PP D DLP
Sbjct: 359 GFLHPPCDCDLP 324
Score = 24.0 bits (46), Expect(4) = 3e-021
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +3 / -2
Query: 1791 VRQFGRKQGK 1820
VR FGRKQGK
Sbjct: 417 VRPFGRKQGK 388
>gb|CA013424.1|CA013424 HT08G16r HT Hordeum vulgare subsp. vulgare cDNA clone HT08G16
5-PRIME, mRNA sequence
Length = 534
Score = 54.7 bits (113), Expect(5) = 8e-024
Identities = 24/29 (82%), Positives = 24/29 (82%)
Frame = -2 / +1
Query: 1777 PLLSFTGTILNG*ASVLKTHSSKDMTDGG 1691
PLL GTIL G*ASVLKTHSSKD TDGG
Sbjct: 448 PLLPCVGTILKG*ASVLKTHSSKDTTDGG 534
Score = 37.3 bits (75), Expect(5) = 8e-024
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = -1 / +1
Query: 2126 PGKQQHMDSELDVCYTSTMH 2067
PGKQQHMD++L +C S MH
Sbjct: 73 PGKQQHMDTKLHMCCKSMMH 132
Score = 31.8 bits (63), Expect(5) = 8e-024
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -2 / +1
Query: 1837 IQGYSGFPCFLPNCRT 1790
+Q Y FPCFLPN RT
Sbjct: 373 VQAYPCFPCFLPNGRT 420
Score = 29.9 bits (59), Expect(5) = 8e-024
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2 / +3
Query: 1894 NTSTGRSESDGGFKNPLLYIQGYSGFP 1814
++ GRS+S GG KNPL+ FP
Sbjct: 315 HSQQGRSQSHGGCKNPLICCSSLPLFP 395
Score = 29.5 bits (58), Expect(5) = 8e-024
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -3 / +2
Query: 2022 LLTSRRSLPRI*HHPLPMIFALNNLSP*FLTLTASGRKFPR 1900
++ SR S+P+I HH LP I S L A+GR R
Sbjct: 185 VILSRFSMPQIIHHALPTIVLPK*PSTVICNLAAAGRNSHR 307
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,014,238,860
Number of Sequences: 312970
Number of extensions: 15858497
Number of successful extensions: 71010
Number of sequences better than 1.0e-020: 18
length of database: 58,378,179
effective HSP length: 54
effective length of database: 41,477,799
effective search space used: 28827070305
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)