TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF13b04.yg.2.1
(370 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV836635.1|AV836635 AV836635 K. Sato unpublished cDNA li... 223 4e-058
gb|AY177665.1| Hordeum vulgare subsp. vulgare putative call... 223 4e-058
gb|BE215834.2|BE215834 HV_CEb0008J21f Hordeum vulgare seedl... 171 1e-042
gb|BU971000.1|BU971000 HB16F02r BC Hordeum vulgare subsp. v... 141 1e-033
gb|BE559011.2|BE559011 HV_CEb0022E12f Hordeum vulgare seedl... 129 5e-030
gb|BM374437.2|BM374437 EBpi03_SQ003_J24_R pistil, 4 DPA, no... 111 4e-029
gb|AV932586.1|AV932586 AV932586 K. Sato unpublished cDNA li... 100 1e-025
gb|BU982241.1|BU982241 HA25P01r HA Hordeum vulgare subsp. v... 115 1e-025
gb|BJ469639.1|BJ469639 BJ469639 K. Sato unpublished cDNA li... 111 2e-024
gb|BJ473076.1|BJ473076 BJ473076 K. Sato unpublished cDNA li... 111 2e-024
gb|AV934137.1|AV934137 AV934137 K. Sato unpublished cDNA li... 95 3e-024
gb|BU969103.1|BU969103 HB10J09r BC Hordeum vulgare subsp. v... 100 7e-021
>gb|AV836635.1|AV836635 AV836635 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare seedling leaves second leaf stage Hordeum
vulgare subsp. vulgare cDNA clone basd19k01, mRNA
sequence
Length = 644
Score = 223 bits (481), Expect = 4e-058
Identities = 94/111 (84%), Positives = 96/111 (86%)
Frame = +3 / +2
Query: 18 YIFLYGKMYLALSGVGESIQNRADIXXXXXXXXXXXTQFLFQIGVFTAVPMILGFILESG 197
YIFLYGK YLALSGVGESIQNRADI TQFLFQIGVFTA+PMILGFILE G
Sbjct: 254 YIFLYGKTYLALSGVGESIQNRADIQGNEALSIALNTQFLFQIGVFTAIPMILGFILEEG 433
Query: 198 VLTAFVQFITMQFQMCSVFFTFSLGTRTHYFGRAILHGGAKYRATGRGFVV 350
VLTAFV FITMQFQ+CSVFFTFSLGTRTHYFGR ILHGGAKYRATGRGFVV
Sbjct: 434 VLTAFVSFITMQFQLCSVFFTFSLGTRTHYFGRTILHGGAKYRATGRGFVV 586
Score = 205 bits (443), Expect = 7e-053
Identities = 87/111 (78%), Positives = 94/111 (84%)
Frame = -1 / -3
Query: 349 TTKPLPVALYFAPPCNIARPK*WVLVPSEKVKNTEHIWNCIVIN*TKAVKTPDSRMKPRI 170
TTKPLPVALYFAPPC+I RPK* VLVP E VKNTEH WNC+V+ TKAV+TP SRMKPRI
Sbjct: 585 TTKPLPVALYFAPPCSIVRPK**VLVPRENVKNTEHSWNCMVMKLTKAVRTPSSRMKPRI 406
Query: 169 MGTAVNTPIWKRN*VFRAAFKAAFCSISALF*IDSPTPDKARYIFP*RNMY 17
+G AVNTPIWKRN VFRA A+F ISALF*IDSPTPDKAR + P*RNMY
Sbjct: 405 IGIAVNTPIWKRNWVFRAMLNASFPCISALF*IDSPTPDKAR*VLP*RNMY 253
Score = 190 bits (410), Expect = 2e-048
Identities = 72/113 (63%), Positives = 87/113 (76%)
Frame = +2 / +1
Query: 17 VHISLWENVSGLIWCWRINSK*SGYTAERSLECCSEHSISFPDWCIYCCSHDSWFHP*IR 196
VHISLW N+SG IWCWRINSK* GYT + S+E SEH +SFPDWC+YC S+DS FHP R
Sbjct: 253 VHISLW*NLSGFIWCWRINSK*GGYTGK*SIEHSSEHPVSFPDWCVYCNSYDSRFHPGRR 432
Query: 197 CFNGFCSVYYNAVPNVLCIFYFLTWNKNPLLWPCNITWRCKV*SNR*RFCGTS 355
C +GFC ++Y+AVP +L IF+ L W+K+ L W N WRCKV*SN * FCGT+
Sbjct: 433 CPDGFCQLHYHAVPTMLRIFHVLPWDKDSLFWSHNTAWRCKV*SNW*GFCGTA 591
Score = 159 bits (341), Expect = 8e-039
Identities = 73/111 (65%), Positives = 81/111 (72%)
Frame = -3 / -2
Query: 350 YHKTSTGCSILCTSM*YCTAKVVGSCSK*ESKKYRAHLELHCNKLNKSR*NT*FKDETKN 171
YHKT T CSILCTSM YC K+V C K E +KY A LELH N+ +KSR +T F+DET N
Sbjct: 586 YHKTPTSCSILCTSMQYCATKIVSPCPKGEREKYGA*LELHGNEADKSRQDTFFQDET*N 407
Query: 170 HGNSSKYTNLEKKLSVQSSIQGCVLQYIRSILN*FSNTR*GQIHFPIEKYV 18
H N SK+TNLEKKL VQS Q + YIR ILN*FSNTR* QI F IEKYV
Sbjct: 406 HRNCSKHTNLEKKLGVQSYAQCFISLYIRPILN*FSNTR*SQIGFTIEKYV 254
Score = 154 bits (331), Expect = 2e-037
Identities = 74/112 (66%), Positives = 81/112 (72%)
Frame = -2 / -1
Query: 351 VPQNLYRLLYTLHLHVILHGQSSGFLFQVRK*KIQSTFGTAL**TEQKPLKHLIQG*NQE 172
VPQN Y+LLYTLHLH +L Q+S L Q R *KI+S GTA **+ QKP HL+ G*N E
Sbjct: 587 VPQNPYQLLYTLHLHAVLCDQNSESLSQGRT*KIRSIVGTAW**S*QKPSGHLLPG*NLE 408
Query: 171 SWEQQ*IHQSGKEIECSEQHSRLRSAVYPLYFELILQHQIRPDTFSHREICT 16
S E Q* HQSGKE CSE S L VYP YFELILQHQI+PD F HREICT
Sbjct: 407 S*ELQ*THQSGKETGCSELCSMLHFPVYPPYFELILQHQIKPDRFYHREICT 252
Score = 60.6 bits (126), Expect(2) = 3e-021
Identities = 32/53 (60%), Positives = 34/53 (64%)
Frame = +1 / +3
Query: 193 QVF*RLLFSLLQCSSKCALYFLLSHLEQEPTTLAVQYYMEVQSIEQPVEVLWY 351
+V *RLL + L CSS A YF S L Q T L QY MEVQSIEQ V VLWY
Sbjct: 429 KVS*RLLSASLPCSSNYAPYFSRSPLGQGLTILVAQYCMEVQSIEQLVGVLWY 587
Score = 58.8 bits (122), Expect(2) = 3e-021
Identities = 29/42 (69%), Positives = 31/42 (73%)
Frame = +1 / +3
Query: 19 TYFSMGKCIWPYLVLENQFKIERIYCRTQP*MLL*TLNFFSR 144
TYFSM K IW YLVLENQFKI RIY + * L*T +FFSR
Sbjct: 255 TYFSMVKPIWLYLVLENQFKIGRIYREMKH*A*L*TPSFFSR 380
>gb|AY177665.1| Hordeum vulgare subsp. vulgare putative callose synthase mRNA,
complete cds
Length = 6180
Score = 223 bits (481), Expect = 4e-058
Identities = 94/111 (84%), Positives = 96/111 (86%)
Frame = +3 / +3
Query: 18 YIFLYGKMYLALSGVGESIQNRADIXXXXXXXXXXXTQFLFQIGVFTAVPMILGFILESG 197
YIFLYGK YLALSGVGESIQNRADI TQFLFQIGVFTA+PMILGFILE G
Sbjct: 4596 YIFLYGKTYLALSGVGESIQNRADIQGNEALSIALNTQFLFQIGVFTAIPMILGFILEEG 4775
Query: 198 VLTAFVQFITMQFQMCSVFFTFSLGTRTHYFGRAILHGGAKYRATGRGFVV 350
VLTAFV FITMQFQ+CSVFFTFSLGTRTHYFGR ILHGGAKYRATGRGFVV
Sbjct: 4776 VLTAFVSFITMQFQLCSVFFTFSLGTRTHYFGRTILHGGAKYRATGRGFVV 4928
Score = 205 bits (443), Expect = 7e-053
Identities = 87/111 (78%), Positives = 94/111 (84%)
Frame = -1 / -3
Query: 349 TTKPLPVALYFAPPCNIARPK*WVLVPSEKVKNTEHIWNCIVIN*TKAVKTPDSRMKPRI 170
TTKPLPVALYFAPPC+I RPK* VLVP E VKNTEH WNC+V+ TKAV+TP SRMKPRI
Sbjct: 4927 TTKPLPVALYFAPPCSIVRPK**VLVPRENVKNTEHSWNCMVMKLTKAVRTPSSRMKPRI 4748
Query: 169 MGTAVNTPIWKRN*VFRAAFKAAFCSISALF*IDSPTPDKARYIFP*RNMY 17
+G AVNTPIWKRN VFRA A+F ISALF*IDSPTPDKAR + P*RNMY
Sbjct: 4747 IGIAVNTPIWKRNWVFRAMLNASFPCISALF*IDSPTPDKAR*VLP*RNMY 4595
Score = 190 bits (410), Expect = 2e-048
Identities = 72/113 (63%), Positives = 87/113 (76%)
Frame = +2 / +2
Query: 17 VHISLWENVSGLIWCWRINSK*SGYTAERSLECCSEHSISFPDWCIYCCSHDSWFHP*IR 196
VHISLW N+SG IWCWRINSK* GYT + S+E SEH +SFPDWC+YC S+DS FHP R
Sbjct: 4595 VHISLW*NLSGFIWCWRINSK*GGYTGK*SIEHSSEHPVSFPDWCVYCNSYDSRFHPGRR 4774
Query: 197 CFNGFCSVYYNAVPNVLCIFYFLTWNKNPLLWPCNITWRCKV*SNR*RFCGTS 355
C +GFC ++Y+AVP +L IF+ L W+K+ L W N WRCKV*SN * FCGT+
Sbjct: 4775 CPDGFCQLHYHAVPTMLRIFHVLPWDKDSLFWSHNTAWRCKV*SNW*GFCGTA 4933
Score = 159 bits (341), Expect = 8e-039
Identities = 73/111 (65%), Positives = 81/111 (72%)
Frame = -3 / -2
Query: 350 YHKTSTGCSILCTSM*YCTAKVVGSCSK*ESKKYRAHLELHCNKLNKSR*NT*FKDETKN 171
YHKT T CSILCTSM YC K+V C K E +KY A LELH N+ +KSR +T F+DET N
Sbjct: 4928 YHKTPTSCSILCTSMQYCATKIVSPCPKGEREKYGA*LELHGNEADKSRQDTFFQDET*N 4749
Query: 170 HGNSSKYTNLEKKLSVQSSIQGCVLQYIRSILN*FSNTR*GQIHFPIEKYV 18
H N SK+TNLEKKL VQS Q + YIR ILN*FSNTR* QI F IEKYV
Sbjct: 4748 HRNCSKHTNLEKKLGVQSYAQCFISLYIRPILN*FSNTR*SQIGFTIEKYV 4596
Score = 154 bits (331), Expect = 2e-037
Identities = 74/112 (66%), Positives = 81/112 (72%)
Frame = -2 / -1
Query: 351 VPQNLYRLLYTLHLHVILHGQSSGFLFQVRK*KIQSTFGTAL**TEQKPLKHLIQG*NQE 172
VPQN Y+LLYTLHLH +L Q+S L Q R *KI+S GTA **+ QKP HL+ G*N E
Sbjct: 4929 VPQNPYQLLYTLHLHAVLCDQNSESLSQGRT*KIRSIVGTAW**S*QKPSGHLLPG*NLE 4750
Query: 171 SWEQQ*IHQSGKEIECSEQHSRLRSAVYPLYFELILQHQIRPDTFSHREICT 16
S E Q* HQSGKE CSE S L VYP YFELILQHQI+PD F HREICT
Sbjct: 4749 S*ELQ*THQSGKETGCSELCSMLHFPVYPPYFELILQHQIKPDRFYHREICT 4594
Score = 60.6 bits (126), Expect(2) = 4e-021
Identities = 32/53 (60%), Positives = 34/53 (64%)
Frame = +1 / +1
Query: 193 QVF*RLLFSLLQCSSKCALYFLLSHLEQEPTTLAVQYYMEVQSIEQPVEVLWY 351
+V *RLL + L CSS A YF S L Q T L QY MEVQSIEQ V VLWY
Sbjct: 4771 KVS*RLLSASLPCSSNYAPYFSRSPLGQGLTILVAQYCMEVQSIEQLVGVLWY 4929
Score = 58.8 bits (122), Expect(2) = 4e-021
Identities = 29/42 (69%), Positives = 31/42 (73%)
Frame = +1 / +1
Query: 19 TYFSMGKCIWPYLVLENQFKIERIYCRTQP*MLL*TLNFFSR 144
TYFSM K IW YLVLENQFKI RIY + * L*T +FFSR
Sbjct: 4597 TYFSMVKPIWLYLVLENQFKIGRIYREMKH*A*L*TPSFFSR 4722
>gb|BE215834.2|BE215834 HV_CEb0008J21f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0008J21f, mRNA sequence
Length = 504
Score = 171 bits (369), Expect = 1e-042
Identities = 70/75 (93%), Positives = 72/75 (96%)
Frame = +3 / +1
Query: 126 TQFLFQIGVFTAVPMILGFILESGVLTAFVQFITMQFQMCSVFFTFSLGTRTHYFGRAIL 305
TQFLFQIGVFTA+PMILGFILE GVLTAFV FITMQFQ+CSVFFTFSLGTRTHYFGR IL
Sbjct: 40 TQFLFQIGVFTAIPMILGFILEEGVLTAFVSFITMQFQLCSVFFTFSLGTRTHYFGRTIL 219
Query: 306 HGGAKYRATGRGFVV 350
HGGAKYRATGRGFVV
Sbjct: 220 HGGAKYRATGRGFVV 264
Score = 155 bits (332), Expect = 1e-037
Identities = 64/83 (77%), Positives = 69/83 (83%)
Frame = -1 / -2
Query: 349 TTKPLPVALYFAPPCNIARPK*WVLVPSEKVKNTEHIWNCIVIN*TKAVKTPDSRMKPRI 170
TTKPLPVALYFAPPC+I RPK* VLVP E VKNTEH WNC+V+ TKAV+TP SRMKPRI
Sbjct: 263 TTKPLPVALYFAPPCSIVRPK**VLVPRENVKNTEHSWNCMVMKLTKAVRTPSSRMKPRI 84
Query: 169 MGTAVNTPIWKRN*VFRAAFKAA 101
+G AVNTPIWKRN VFRA A
Sbjct: 83 IGIAVNTPIWKRNWVFRAMLTRA 15
Score = 131 bits (281), Expect = 1e-030
Identities = 49/82 (59%), Positives = 61/82 (74%)
Frame = +2 / +3
Query: 110 ECCSEHSISFPDWCIYCCSHDSWFHP*IRCFNGFCSVYYNAVPNVLCIFYFLTWNKNPLL 289
E SEH +SFPDWC+YC S+DS FHP RC +GFC ++Y+AVP +L IF+ L W+K+ L
Sbjct: 24 EHSSEHPVSFPDWCVYCNSYDSRFHPGRRCPDGFCQLHYHAVPTMLRIFHVLPWDKDSLF 203
Query: 290 WPCNITWRCKV*SNR*RFCGTS 355
W N WRCKV*SN * FCGT+
Sbjct: 204 WSHNTAWRCKV*SNW*GFCGTA 269
Score = 121 bits (259), Expect = 2e-027
Identities = 52/87 (59%), Positives = 62/87 (71%)
Frame = -3 / -1
Query: 350 YHKTSTGCSILCTSM*YCTAKVVGSCSK*ESKKYRAHLELHCNKLNKSR*NT*FKDETKN 171
YHKT T CSILCTSM YC K+V C K E +KY A LELH N+ +KSR +T F+DET N
Sbjct: 264 YHKTPTSCSILCTSMQYCATKIVSPCPKGEREKYGA*LELHGNEADKSRQDTFFQDET*N 85
Query: 170 HGNSSKYTNLEKKLSVQSSIQGCVLQY 90
H N SK+TNLEKKL VQS C +++
Sbjct: 84 HRNCSKHTNLEKKLGVQSYAHSCRIRH 4
Score = 99.6 bits (211), Expect = 7e-021
Identities = 50/78 (64%), Positives = 56/78 (71%)
Frame = -2 / -3
Query: 351 VPQNLYRLLYTLHLHVILHGQSSGFLFQVRK*KIQSTFGTAL**TEQKPLKHLIQG*NQE 172
VPQN Y+LLYTLHLH +L Q+S L Q R *KI+S GTA **+ QKP HL+ G*N E
Sbjct: 265 VPQNPYQLLYTLHLHAVLCDQNSESLSQGRT*KIRSIVGTAW**S*QKPSGHLLPG*NLE 86
Query: 171 SWEQQ*IHQSGKEIECSE 118
S E Q* HQSGKE CSE
Sbjct: 85 S*ELQ*THQSGKETGCSE 32
>gb|BU971000.1|BU971000 HB16F02r BC Hordeum vulgare subsp. vulgare cDNA clone HB16F02
5-PRIME, mRNA sequence
Length = 380
Score = 141 bits (303), Expect = 1e-033
Identities = 60/109 (55%), Positives = 74/109 (67%)
Frame = +3 / +3
Query: 24 FLYGKMYLALSGVGESIQNRADIXXXXXXXXXXXTQFLFQIGVFTAVPMILGFILESGVL 203
F++G++YLALSG+ IQ A+ QF+ Q+G FTA+PMIL LE G L
Sbjct: 12 FVWGRLYLALSGLEAGIQGSANATNNKALGAVLNQQFVIQLGFFTALPMILENSLELGFL 191
Query: 204 TAFVQFITMQFQMCSVFFTFSLGTRTHYFGRAILHGGAKYRATGRGFVV 350
A F TMQ SVF+TFS+GT++HY+GR ILHGGAKYRATGRGFVV
Sbjct: 192 PAVWDFFTMQMNFSSVFYTFSMGTKSHYYGRTILHGGAKYRATGRGFVV 338
>gb|BE559011.2|BE559011 HV_CEb0022E12f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0022E12f, mRNA sequence
Length = 730
Score = 129 bits (277), Expect = 5e-030
Identities = 52/66 (78%), Positives = 57/66 (86%)
Frame = +3 / +2
Query: 153 FTAVPMILGFILESGVLTAFVQFITMQFQMCSVFFTFSLGTRTHYFGRAILHGGAKYRAT 332
FTAVPMI+GFI E G++ A FITMQ Q CS+FFTFSLGTRTHYFGR ILHGGAK+RAT
Sbjct: 17 FTAVPMIMGFISELGLMKAIFSFITMQLQFCSLFFTFSLGTRTHYFGRTILHGGAKHRAT 196
Query: 333 GRGFVV 350
GRGFVV
Sbjct: 197 GRGFVV 214
>gb|BM374437.2|BM374437 EBpi03_SQ003_J24_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ003_J24 5', mRNA sequence
Length = 573
Score = 111 bits (237), Expect(2) = 4e-029
Identities = 44/75 (58%), Positives = 56/75 (74%)
Frame = +3 / +1
Query: 126 TQFLFQIGVFTAVPMILGFILESGVLTAFVQFITMQFQMCSVFFTFSLGTRTHYFGRAIL 305
+Q Q+G A+PM++ LE G TA F+ MQ Q+ SVFFTFSLGT+THY+G+ +L
Sbjct: 148 SQSFVQLGFLMALPMMMEIGLERGFRTALSDFVLMQLQLASVFFTFSLGTKTHYYGKTLL 327
Query: 306 HGGAKYRATGRGFVV 350
HGGA+YRATGRGFVV
Sbjct: 328 HGGAEYRATGRGFVV 372
Score = 34.5 bits (69), Expect(2) = 4e-029
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = +3 / +1
Query: 18 YIFLYGKMYLALSGVGESI 74
Y+FLYG++YL LSG+ E +
Sbjct: 40 YVFLYGRLYLVLSGLDEGL 96
>gb|AV932586.1|AV932586 AV932586 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal1e06 5', mRNA sequence
Length = 582
Score = 100 bits (212), Expect(2) = 1e-025
Identities = 39/70 (55%), Positives = 51/70 (72%)
Frame = +3 / +1
Query: 126 TQFLFQIGVFTAVPMILGFILESGVLTAFVQFITMQFQMCSVFFTFSLGTRTHYFGRAIL 305
+Q Q+G A+PM++ LE G TA F+ MQ Q+ SVFFTFSLGT+THY+G+ +L
Sbjct: 373 SQSFVQLGFLMALPMMMEIGLERGFRTALSDFVLMQLQLASVFFTFSLGTKTHYYGKTLL 552
Query: 306 HGGAKYRATG 335
HGGA+YRATG
Sbjct: 553 HGGAEYRATG 582
Score = 34.5 bits (69), Expect(2) = 1e-025
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = +3 / +1
Query: 18 YIFLYGKMYLALSGVGESI 74
Y+FLYG++YL LSG+ E +
Sbjct: 265 YVFLYGRLYLVLSGLDEGL 321
>gb|BU982241.1|BU982241 HA25P01r HA Hordeum vulgare subsp. vulgare cDNA clone HA25P01
5-PRIME, mRNA sequence
Length = 300
Score = 115 bits (245), Expect = 1e-025
Identities = 46/74 (62%), Positives = 56/74 (75%)
Frame = +3 / +3
Query: 129 QFLFQIGVFTAVPMILGFILESGVLTAFVQFITMQFQMCSVFFTFSLGTRTHYFGRAILH 308
Q +FQ+G+ +PM++ LE G TA +FI MQ Q+ SVFFTF LGT+THY+GR ILH
Sbjct: 33 QSVFQLGLLLVLPMVMEVGLEKGFRTAVGEFIIMQLQLASVFFTFQLGTKTHYYGRTILH 212
Query: 309 GGAKYRATGRGFVV 350
GGAKYR TGRGFVV
Sbjct: 213 GGAKYRPTGRGFVV 254
>gb|BJ469639.1|BJ469639 BJ469639 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal27j14 5', mRNA sequence
Length = 604
Score = 111 bits (237), Expect = 2e-024
Identities = 44/75 (58%), Positives = 56/75 (74%)
Frame = +3 / +1
Query: 126 TQFLFQIGVFTAVPMILGFILESGVLTAFVQFITMQFQMCSVFFTFSLGTRTHYFGRAIL 305
+Q Q+G A+PM++ LE G TA F+ MQ Q+ SVFFTFSLGT+THY+G+ +L
Sbjct: 10 SQSFVQLGFLMALPMMMEIGLERGFRTALSDFVLMQLQLASVFFTFSLGTKTHYYGKTLL 189
Query: 306 HGGAKYRATGRGFVV 350
HGGA+YRATGRGFVV
Sbjct: 190 HGGAEYRATGRGFVV 234
>gb|BJ473076.1|BJ473076 BJ473076 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal40n15 5', mRNA sequence
Length = 614
Score = 111 bits (237), Expect = 2e-024
Identities = 44/75 (58%), Positives = 56/75 (74%)
Frame = +3 / +3
Query: 126 TQFLFQIGVFTAVPMILGFILESGVLTAFVQFITMQFQMCSVFFTFSLGTRTHYFGRAIL 305
+Q Q+G A+PM++ LE G TA F+ MQ Q+ SVFFTFSLGT+THY+G+ +L
Sbjct: 21 SQSFVQLGFLMALPMMMEIGLERGFRTALSDFVLMQLQLASVFFTFSLGTKTHYYGKTLL 200
Query: 306 HGGAKYRATGRGFVV 350
HGGA+YRATGRGFVV
Sbjct: 201 HGGAEYRATGRGFVV 245
>gb|AV934137.1|AV934137 AV934137 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal11c09 5', mRNA sequence
Length = 589
Score = 95.0 bits (201), Expect(2) = 3e-024
Identities = 37/68 (54%), Positives = 49/68 (72%)
Frame = +3 / +1
Query: 126 TQFLFQIGVFTAVPMILGFILESGVLTAFVQFITMQFQMCSVFFTFSLGTRTHYFGRAIL 305
+Q Q+G A+PM++ LE G TA F+ MQ Q+ SVFFTFSLGT+THY+G+ +L
Sbjct: 385 SQSFVQLGFLMALPMMMEIGLERGFRTALSDFVLMQLQLASVFFTFSLGTKTHYYGKTLL 564
Query: 306 HGGAKYRA 329
HGGA+YRA
Sbjct: 565 HGGAEYRA 588
Score = 34.5 bits (69), Expect(2) = 3e-024
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = +3 / +1
Query: 18 YIFLYGKMYLALSGVGESI 74
Y+FLYG++YL LSG+ E +
Sbjct: 277 YVFLYGRLYLVLSGLDEGL 333
>gb|BU969103.1|BU969103 HB10J09r BC Hordeum vulgare subsp. vulgare cDNA clone HB10J09
5-PRIME, mRNA sequence
Length = 426
Score = 99.6 bits (211), Expect = 7e-021
Identities = 35/48 (72%), Positives = 40/48 (83%)
Frame = +2 / +1
Query: 17 VHISLWENVSGLIWCWRINSK*SGYTAERSLECCSEHSISFPDWCIYC 160
VHISLW N+SG IWCWRINSK* GYT + S+E SEH +SFPDWC+YC
Sbjct: 283 VHISLW*NLSGFIWCWRINSK*GGYTGK*SIEHSSEHPVSFPDWCVYC 426
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 183,106,418
Number of Sequences: 312970
Number of extensions: 2645314
Number of successful extensions: 148787
Number of sequences better than 1.0e-020: 15
length of database: 58,378,179
effective HSP length: 49
effective length of database: 43,042,649
effective search space used: 3142113377
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)