TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAE40a10.yg.2.1
(709 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY177665.1| Hordeum vulgare subsp. vulgare putative call... 434 e-121
gb|CA031522.1|CA031522 HX10D22r HX Hordeum vulgare subsp. v... 344 3e-094
gb|BE215834.2|BE215834 HV_CEb0008J21f Hordeum vulgare seedl... 308 3e-083
gb|BJ469639.1|BJ469639 BJ469639 K. Sato unpublished cDNA li... 285 2e-076
gb|BJ473076.1|BJ473076 BJ473076 K. Sato unpublished cDNA li... 285 2e-076
gb|BF616755.1|BF616755 HVSMEc0012I18f Hordeum vulgare seedl... 262 1e-069
gb|BE559011.2|BE559011 HV_CEb0022E12f Hordeum vulgare seedl... 210 8e-058
gb|BG369637.1|BG369637 HVSMEi0025E14f Hordeum vulgare 20 DA... 205 7e-057
gb|BM374437.2|BM374437 EBpi03_SQ003_J24_R pistil, 4 DPA, no... 218 2e-056
gb|AV836635.1|AV836635 AV836635 K. Sato unpublished cDNA li... 199 1e-050
gb|CA018258.1|CA018258 HV08B15r HV Hordeum vulgare subsp. v... 168 5e-047
gb|CA027060.1|CA027060 HZ57M12r HZ Hordeum vulgare subsp. v... 136 7e-037
gb|BU971000.1|BU971000 HB16F02r BC Hordeum vulgare subsp. v... 153 1e-036
gb|BF627189.2|BF627189 HVSMEb0004D01f Hordeum vulgare seedl... 124 2e-033
gb|BU982241.1|BU982241 HA25P01r HA Hordeum vulgare subsp. v... 135 3e-031
gb|BG418775.1|BG418775 HVSMEk0024G07f Hordeum vulgare testa... 120 7e-027
gb|BG415637.1|BG415637 HVSMEk0007E11f Hordeum vulgare testa... 117 7e-026
gb|AV932586.1|AV932586 AV932586 K. Sato unpublished cDNA li... 102 2e-021
>gb|AY177665.1| Hordeum vulgare subsp. vulgare putative callose synthase mRNA,
complete cds
Length = 6180
Score = 434 bits (942), Expect = e-121
Identities = 168/229 (73%), Positives = 191/229 (83%)
Frame = -1 / +3
Query: 703 SISRXAXFLXXXXLDAALNAQFLXXIGIXTXVPMIMGFILXLGLMKAVFSFITMQLQFCS 524
SI A L ALN QFL IG+ T +PMI+GFIL G++ A SFITMQ Q CS
Sbjct: 4647 SIQNRADIQGNEALSIALNTQFLFQIGVFTAIPMILGFILEEGVLTAFVSFITMQFQLCS 4826
Query: 523 VFFTFSLGTRTHYFGRTILHGGAKYRATGRGFVVRHIKFAENYRLYSRSHFVKALEVALL 344
VFFTFSLGTRTHYFGRTILHGGAKYRATGRGFVVRHIKFAENYRLYSRSHFVK LEVALL
Sbjct: 4827 VFFTFSLGTRTHYFGRTILHGGAKYRATGRGFVVRHIKFAENYRLYSRSHFVKGLEVALL 5006
Query: 343 LIVYIAYGYTKGGSSSFILITISSWFLVMSWLFAPYIFNPSGFEWQKTVEDFDDWTNWLL 164
L++++AYG+ G+ +IL++ISSWF+ +SWLFAPY+FNPSGFEWQK VEDF DWTNWL
Sbjct: 5007 LVIFLAYGFNNSGAIGYILLSISSWFMALSWLFAPYVFNPSGFEWQKVVEDFRDWTNWLF 5186
Query: 163 YKGGVGVKGDNSWESWWDEEQAHIQTFRGRILETILSLRFLMFQYGIVY 17
Y+GG+GVKG+ SWE+WWDEE AHI TFRGRILETILSLRF +FQYG+VY
Sbjct: 5187 YRGGIGVKGEESWEAWWDEELAHIHTFRGRILETILSLRFFIFQYGVVY 5333
Score = 182 bits (392), Expect(2) = 1e-053
Identities = 90/163 (55%), Positives = 104/163 (63%)
Frame = +3 / -3
Query: 168 NQFVQSSKSSTVFCHSKPEGLKM*GAKSQDITRNQLLIVIRINEDEPPFVYPYAM*TIRR 347
+QFVQS KSST FCHS P+GL GAKSQ+ NQLL+ +I P + P A R
Sbjct: 5182 SQFVQSLKSSTTFCHSNPDGLNTYGAKSQERAINQLLMESKI*PIAPLLLKP*ARKITNR 5003
Query: 348 RATSSALTK*LRE*SL*FSANFMCRTTKPLPVARYFAPP*RIVLPK*CVLVPSEKVKNTE 527
ATSS TK LRE* *FSAN +CRTTKPLPVA YFAPP IV PK* VLVP E VKNTE
Sbjct: 5002 SATSSPFTKWLRE*RR*FSANLICRTTKPLPVALYFAPPCSIVRPK**VLVPRENVKNTE 4823
Query: 528 QNWSCIVIKLKTAFISPSXRMKPXXXXXXXXXXXXXKN*AFKA 656
+W+C+V+KL A +PS RMKP +N F+A
Sbjct: 4822 HSWNCMVMKLTKAVRTPSSRMKPRIIGIAVNTPIWKRNWVFRA 4694
Score = 136 bits (291), Expect = 2e-031
Identities = 62/170 (36%), Positives = 92/170 (54%)
Frame = -3 / +2
Query: 656 SFECSIFXXDWYFXXSPDDNGFHSXAGADEGCF*FYYNAAPVLFGVFHLFAWNKDTLLW* 477
S E + DW + D+ FH +G +Y+A P + +FH+ W+KD+L W
Sbjct: 4694 SSEHPVSFPDWCVYCNSYDSRFHPGRRCPDGFCQLHYHAVPTMLRIFHVLPWDKDSLFWS 4873
Query: 476 NNPSWRCKVSCYWKRFCCSAHKVC*KL*ALFSKSLCQSA*GCSPPDRLHCIWIHKRRFIF 297
+N +WRCKV W FC +A+ VC*+L +LF K C+ A GC+ L +W ++ +
Sbjct: 4874 HNTAWRCKV*SNW*GFCGTAY*VC*ELPSLFPKPFCERAGGCTSVGYLSSLWF*QQWSNW 5053
Query: 296 IYSDYYQ*LVPRYVLAFRALHFQPFWFRVAKDC*GL**LDKLVTL*RWSW 147
+Y +++*LV LAF ++ QP W +AK G LDKL L RW W
Sbjct: 5054 LYLTFHK*LVYGSFLAFCSIRIQPVWI*MAKGRRGFQRLDKLAFLPRWYW 5203
Score = 103 bits (220), Expect(2) = 4e-039
Identities = 45/107 (42%), Positives = 70/107 (65%)
Frame = +2 / -2
Query: 335 NDQEESNLKRFDKVTSRIEPIIFSKLYVPNNKTSSSSTILCTAMKDCSTKVMCPCSKRKG 514
++Q++ NL+ F K+ S I+ +I SKL +P +KT +S +ILCT+M+ C+TK++ PC K +
Sbjct: 5015 DNQQKCNLQPFHKMASGIKTVILSKLNMPYHKTPTSCSILCTSMQYCATKIVSPCPKGER 4836
Query: 515 EKHRTELELHCNKTKNSLHQPQLXNETHYHRDXXXNTNLXQKLSIQS 655
EK+ LELH N+ S +ET HR+ +TNL +KL +QS
Sbjct: 4835 EKYGA*LELHGNEADKSRQDTFFQDET*NHRNCSKHTNLEKKLGVQS 4695
Score = 77.6 bits (163), Expect(2) = 4e-039
Identities = 34/87 (39%), Positives = 55/87 (63%)
Frame = +2 / -2
Query: 17 VHNAILKHEKSKAEDCLKNTSSECLDMRLLLIPPRFPTVVTLYTNSTFIK*PVCPVIKVL 196
V+N+IL+++KS + + +E ++M IPP FP + N+T +K PVCPV ++L
Sbjct: 5333 VNNSILENKKS*TKYSFQYPPAEGVNMCQFFIPPSFPAFFSFNPNTTSVKKPVCPVSEIL 5154
Query: 197 NSLLPLETRRVENVRREKPGHNEEPTT 277
+ LLP ++RRVE V +KP + +P T
Sbjct: 5153 DDLLPFKSRRVEYVWSKKPRKSHKPAT 5073
Score = 47.8 bits (98), Expect(2) = 1e-053
Identities = 22/36 (61%), Positives = 25/36 (69%)
Frame = +3 / -3
Query: 21 TMPY*NMRNLRLRIVSRIRPLNVWICACSSSHQDSQ 128
T PY ++NL+L IVS I P V ICA SSSHQ SQ
Sbjct: 5329 TTPYWKIKNLKLSIVSSILPRKV*ICASSSSHQASQ 5222
>gb|CA031522.1|CA031522 HX10D22r HX Hordeum vulgare subsp. vulgare cDNA clone HX10D22
5-PRIME, mRNA sequence
Length = 478
Score = 344 bits (746), Expect = 3e-094
Identities = 129/158 (81%), Positives = 145/158 (91%)
Frame = -1 / +3
Query: 526 SVFFTFSLGTRTHYFGRTILHGGAKYRATGRGFVVRHIKFAENYRLYSRSHFVKALEVAL 347
SVFFTFSLGTRTHYFGRTILHGGAKYRATGRGFVVRHIKFAENYRLYSRSHFVK LEVAL
Sbjct: 3 SVFFTFSLGTRTHYFGRTILHGGAKYRATGRGFVVRHIKFAENYRLYSRSHFVKGLEVAL 182
Query: 346 LLIVYIAYGYTKGGSSSFILITISSWFLVMSWLFAPYIFNPSGFEWQKTVEDFDDWTNWL 167
LL++++AYG+ G+ +IL++ISSWF+ +SWLFAPY+FNPSGFEWQK VEDF DWTNWL
Sbjct: 183 LLVIFLAYGFNNSGAIGYILLSISSWFMALSWLFAPYVFNPSGFEWQKVVEDFRDWTNWL 362
Query: 166 LYKGGVGVKGDNSWESWWDEEQAHIQTFRGRILETILS 53
Y+GG+GVKG+ SWE+WWDEE AHI TFRGRILETILS
Sbjct: 363 FYRGGIGVKGEESWEAWWDEELAHIHTFRGRILETILS 476
Score = 149 bits (320), Expect(2) = 4e-040
Identities = 75/120 (62%), Positives = 82/120 (68%)
Frame = +3 / -1
Query: 168 NQFVQSSKSSTVFCHSKPEGLKM*GAKSQDITRNQLLIVIRINEDEPPFVYPYAM*TIRR 347
+QFVQS KSST FCHS P+GL GAKSQ+ NQLL+ +I P + P A R
Sbjct: 361 SQFVQSLKSSTTFCHSNPDGLNTYGAKSQERAINQLLMESKI*PIAPLLLKP*ARKITNR 182
Query: 348 RATSSALTK*LRE*SL*FSANFMCRTTKPLPVARYFAPP*RIVLPK*CVLVPSEKVKNTE 527
ATSS TK LRE* *FSAN +CRTTKPLPVA YFAPP IV PK* VLVP E VKNTE
Sbjct: 181 SATSSPFTKWLRE*RR*FSANLICRTTKPLPVALYFAPPCSIVRPK**VLVPRENVKNTE 2
Score = 116 bits (248), Expect = 1e-025
Identities = 51/125 (40%), Positives = 74/125 (59%)
Frame = -3 / +2
Query: 521 VFHLFAWNKDTLLW*NNPSWRCKVSCYWKRFCCSAHKVC*KL*ALFSKSLCQSA*GCSPP 342
+FH+ W+KD+L W +N +WRCKV W FC +A+ VC*+L +LF K C+ A GC+
Sbjct: 8 IFHVLPWDKDSLFWSHNTAWRCKV*SNW*GFCGTAY*VC*ELPSLFPKPFCERAGGCTSV 187
Query: 341 DRLHCIWIHKRRFIFIYSDYYQ*LVPRYVLAFRALHFQPFWFRVAKDC*GL**LDKLVTL 162
L +W ++ ++Y +++*LV LAF ++ QP W +AK G LDKL L
Sbjct: 188 GYLSSLWF*QQWSNWLYLTFHK*LVYGSFLAFCSIRIQPVWI*MAKGRRGFQRLDKLAFL 367
Query: 161 *RWSW 147
RW W
Sbjct: 368 PRWYW 382
Score = 72.5 bits (152), Expect(2) = 8e-027
Identities = 28/63 (44%), Positives = 47/63 (74%)
Frame = +2 / -3
Query: 335 NDQEESNLKRFDKVTSRIEPIIFSKLYVPNNKTSSSSTILCTAMKDCSTKVMCPCSKRKG 514
++Q++ NL+ F K+ S I+ +I SKL +P +KT +S +ILCT+M+ C+TK++ PC K +
Sbjct: 194 DNQQKCNLQPFHKMASGIKTVILSKLNMPYHKTPTSCSILCTSMQYCATKIVSPCPKGER 15
Query: 515 EKH 523
EK+
Sbjct: 14 EKY 6
Score = 67.5 bits (141), Expect(2) = 8e-027
Identities = 28/66 (42%), Positives = 42/66 (63%)
Frame = +2 / -3
Query: 80 SECLDMRLLLIPPRFPTVVTLYTNSTFIK*PVCPVIKVLNSLLPLETRRVENVRREKPGH 259
+E ++M IPP FP + N+T +K PVCPV ++L+ LLP ++RRVE V +KP
Sbjct: 449 AEGVNMCQFFIPPSFPAFFSFNPNTTSVKKPVCPVSEILDDLLPFKSRRVEYVWSKKPRK 270
Query: 260 NEEPTT 277
+ +P T
Sbjct: 269 SHKPAT 252
Score = 35.4 bits (71), Expect(2) = 4e-040
Identities = 17/26 (65%), Positives = 18/26 (69%)
Frame = +3 / -1
Query: 51 RLRIVSRIRPLNVWICACSSSHQDSQ 128
+L IVS I P V ICA SSSHQ SQ
Sbjct: 478 KLSIVSSILPRKV*ICASSSSHQASQ 401
>gb|BE215834.2|BE215834 HV_CEb0008J21f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0008J21f, mRNA sequence
Length = 504
Score = 308 bits (666), Expect = 3e-083
Identities = 120/158 (75%), Positives = 137/158 (86%)
Frame = -1 / +1
Query: 655 ALNAQFLXXIGIXTXVPMIMGFILXLGLMKAVFSFITMQLQFCSVFFTFSLGTRTHYFGR 476
ALN QFL IG+ T +PMI+GFIL G++ A SFITMQ Q CSVFFTFSLGTRTHYFGR
Sbjct: 31 ALNTQFLFQIGVFTAIPMILGFILEEGVLTAFVSFITMQFQLCSVFFTFSLGTRTHYFGR 210
Query: 475 TILHGGAKYRATGRGFVVRHIKFAENYRLYSRSHFVKALEVALLLIVYIAYGYTKGGSSS 296
TILHGGAKYRATGRGFVVRHIKFAENYRLYSRSHFVK LEVALLL++++AYG+ G+
Sbjct: 211 TILHGGAKYRATGRGFVVRHIKFAENYRLYSRSHFVKGLEVALLLVIFLAYGFNNSGAIG 390
Query: 295 FILITISSWFLVMSWLFAPYIFNPSGFEWQKTVEDFDD 182
+IL++ISSWF+ +SWLFAPY+FNPSGFEWQK VEDF D
Sbjct: 391 YILLSISSWFMALSWLFAPYVFNPSGFEWQKVVEDFRD 504
Score = 172 bits (371), Expect = 1e-042
Identities = 86/158 (54%), Positives = 99/158 (62%)
Frame = +3 / -2
Query: 183 SSKSSTVFCHSKPEGLKM*GAKSQDITRNQLLIVIRINEDEPPFVYPYAM*TIRRRATSS 362
S KSST FCHS P+GL GAKSQ+ NQLL+ +I P + P A R ATSS
Sbjct: 503 SLKSSTTFCHSNPDGLNTYGAKSQERAINQLLMESKI*PIAPLLLKP*ARKITNRSATSS 324
Query: 363 ALTK*LRE*SL*FSANFMCRTTKPLPVARYFAPP*RIVLPK*CVLVPSEKVKNTEQNWSC 542
TK LRE* *FSAN +CRTTKPLPVA YFAPP IV PK* VLVP E VKNTE +W+C
Sbjct: 323 PFTKWLRE*RR*FSANLICRTTKPLPVALYFAPPCSIVRPK**VLVPRENVKNTEHSWNC 144
Query: 543 IVIKLKTAFISPSXRMKPXXXXXXXXXXXXXKN*AFKA 656
+V+KL A +PS RMKP +N F+A
Sbjct: 143 MVMKLTKAVRTPSSRMKPRIIGIAVNTPIWKRNWVFRA 30
Score = 121 bits (259), Expect = 4e-027
Identities = 53/151 (35%), Positives = 83/151 (54%)
Frame = -3 / +3
Query: 656 SFECSIFXXDWYFXXSPDDNGFHSXAGADEGCF*FYYNAAPVLFGVFHLFAWNKDTLLW* 477
S E + DW + D+ FH +G +Y+A P + +FH+ W+KD+L W
Sbjct: 30 SSEHPVSFPDWCVYCNSYDSRFHPGRRCPDGFCQLHYHAVPTMLRIFHVLPWDKDSLFWS 209
Query: 476 NNPSWRCKVSCYWKRFCCSAHKVC*KL*ALFSKSLCQSA*GCSPPDRLHCIWIHKRRFIF 297
+N +WRCKV W FC +A+ VC*+L +LF K C+ A GC+ L +W ++ +
Sbjct: 210 HNTAWRCKV*SNW*GFCGTAY*VC*ELPSLFPKPFCERAGGCTSVGYLSSLWF*QQWSNW 389
Query: 296 IYSDYYQ*LVPRYVLAFRALHFQPFWFRVAK 204
+Y +++*LV LAF ++ QP W +AK
Sbjct: 390 LYLTFHK*LVYGSFLAFCSIRIQPVWI*MAK 482
Score = 103 bits (220), Expect(2) = 4e-026
Identities = 45/107 (42%), Positives = 70/107 (65%)
Frame = +2 / -1
Query: 335 NDQEESNLKRFDKVTSRIEPIIFSKLYVPNNKTSSSSTILCTAMKDCSTKVMCPCSKRKG 514
++Q++ NL+ F K+ S I+ +I SKL +P +KT +S +ILCT+M+ C+TK++ PC K +
Sbjct: 351 DNQQKCNLQPFHKMASGIKTVILSKLNMPYHKTPTSCSILCTSMQYCATKIVSPCPKGER 172
Query: 515 EKHRTELELHCNKTKNSLHQPQLXNETHYHRDXXXNTNLXQKLSIQS 655
EK+ LELH N+ S +ET HR+ +TNL +KL +QS
Sbjct: 171 EKYGA*LELHGNEADKSRQDTFFQDET*NHRNCSKHTNLEKKLGVQS 31
Score = 34.1 bits (68), Expect(2) = 4e-026
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = +2 / -1
Query: 182 VIKVLNSLLPLETRRVENVRREKPGHNEEPTT 277
+ ++L+ LLP ++RRVE V +KP + +P T
Sbjct: 504 ISEILDDLLPFKSRRVEYVWSKKPRKSHKPAT 409
>gb|BJ469639.1|BJ469639 BJ469639 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal27j14 5', mRNA sequence
Length = 604
Score = 285 bits (617), Expect = 2e-076
Identities = 107/184 (58%), Positives = 140/184 (76%)
Frame = -1 / +1
Query: 655 ALNAQFLXXIGIXTXVPMIMGFILXLGLMKAVFSFITMQLQFCSVFFTFSLGTRTHYFGR 476
AL +Q +G +PM+M L G A+ F+ MQLQ SVFFTFSLGT+THY+G+
Sbjct: 1 ALASQSFVQLGFLMALPMMMEIGLERGFRTALSDFVLMQLQLASVFFTFSLGTKTHYYGK 180
Query: 475 TILHGGAKYRATGRGFVVRHIKFAENYRLYSRSHFVKALEVALLLIVYIAYGYTKGGSSS 296
T+LHGGA+YRATGRGFVV H KFAENYRLYSRSHFVK +E+ +LLIV+ +G + G+ +
Sbjct: 181 TLLHGGAEYRATGRGFVVFHAKFAENYRLYSRSHFVKGIELMILLIVFEIFGQSYRGAIA 360
Query: 295 FILITISSWFLVMSWLFAPYIFNPSGFEWQKTVEDFDDWTNWLLYKGGVGVKGDNSWESW 116
+I IT S WF+V++WLFAP++FNPSGFEWQK V+D+ DW W+ +GG+GV + SWESW
Sbjct: 361 YIFITFSMWFMVVTWLFAPFLFNPSGFEWQKIVDDWTDWNKWISNRGGIGVSPEKSWESW 540
Query: 115 WDEE 104
W++E
Sbjct: 541 WEKE 552
Score = 123 bits (264), Expect = 8e-028
Identities = 67/136 (49%), Positives = 78/136 (57%)
Frame = +3 / -3
Query: 180 QSSKSSTVFCHSKPEGLKM*GAKSQDITRNQLLIVIRINEDEPPFVYPYAM*TIRRRATS 359
QS +SST+FCHS PEGL GAKSQ T N + V+++ P + P TI + S
Sbjct: 476 QSVQSSTIFCHSNPEGLNRNGAKSQVTTMNHMEKVMKMYAMAPRYDCPKISNTISKIINS 297
Query: 360 SALTK*LRE*SL*FSANFMCRTTKPLPVARYFAPP*RIVLPK*CVLVPSEKVKNTEQNWS 539
LTK LRE S *FSAN TT P PVA Y APP V P * VLVP E VK T+ N S
Sbjct: 296 MPLTKWLREYSR*FSANLAWNTTNPRPVALYSAPPCSSVFP***VLVPRENVKKTDAN*S 117
Query: 540 CIVIKLKTAFISPSXR 587
CI K A ++P R
Sbjct: 116 CISTKSLNAVLNPLSR 69
>gb|BJ473076.1|BJ473076 BJ473076 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal40n15 5', mRNA sequence
Length = 614
Score = 285 bits (617), Expect = 2e-076
Identities = 107/184 (58%), Positives = 140/184 (76%)
Frame = -1 / +3
Query: 655 ALNAQFLXXIGIXTXVPMIMGFILXLGLMKAVFSFITMQLQFCSVFFTFSLGTRTHYFGR 476
AL +Q +G +PM+M L G A+ F+ MQLQ SVFFTFSLGT+THY+G+
Sbjct: 12 ALASQSFVQLGFLMALPMMMEIGLERGFRTALSDFVLMQLQLASVFFTFSLGTKTHYYGK 191
Query: 475 TILHGGAKYRATGRGFVVRHIKFAENYRLYSRSHFVKALEVALLLIVYIAYGYTKGGSSS 296
T+LHGGA+YRATGRGFVV H KFAENYRLYSRSHFVK +E+ +LLIV+ +G + G+ +
Sbjct: 192 TLLHGGAEYRATGRGFVVFHAKFAENYRLYSRSHFVKGIELMILLIVFEIFGQSYRGAIA 371
Query: 295 FILITISSWFLVMSWLFAPYIFNPSGFEWQKTVEDFDDWTNWLLYKGGVGVKGDNSWESW 116
+I IT S WF+V++WLFAP++FNPSGFEWQK V+D+ DW W+ +GG+GV + SWESW
Sbjct: 372 YIFITFSMWFMVVTWLFAPFLFNPSGFEWQKIVDDWTDWNKWISNRGGIGVSPEKSWESW 551
Query: 115 WDEE 104
W++E
Sbjct: 552 WEKE 563
Score = 123 bits (264), Expect = 8e-028
Identities = 67/136 (49%), Positives = 78/136 (57%)
Frame = +3 / -2
Query: 180 QSSKSSTVFCHSKPEGLKM*GAKSQDITRNQLLIVIRINEDEPPFVYPYAM*TIRRRATS 359
QS +SST+FCHS PEGL GAKSQ T N + V+++ P + P TI + S
Sbjct: 487 QSVQSSTIFCHSNPEGLNRNGAKSQVTTMNHMEKVMKMYAMAPRYDCPKISNTISKIINS 308
Query: 360 SALTK*LRE*SL*FSANFMCRTTKPLPVARYFAPP*RIVLPK*CVLVPSEKVKNTEQNWS 539
LTK LRE S *FSAN TT P PVA Y APP V P * VLVP E VK T+ N S
Sbjct: 307 MPLTKWLREYSR*FSANLAWNTTNPRPVALYSAPPCSSVFP***VLVPRENVKKTDAN*S 128
Query: 540 CIVIKLKTAFISPSXR 587
CI K A ++P R
Sbjct: 127 CISTKSLNAVLNPLSR 80
>gb|BF616755.1|BF616755 HVSMEc0012I18f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0012I18f, mRNA sequence
Length = 762
Score = 262 bits (567), Expect = 1e-069
Identities = 96/157 (61%), Positives = 126/157 (80%)
Frame = -1 / +3
Query: 544 MQLQFCSVFFTFSLGTRTHYFGRTILHGGAKYRATGRGFVVRHIKFAENYRLYSRSHFVK 365
MQLQ SV FTFSLGT+TH++G+T+LHGGA+YRATGRGFVV H KFAENYRLYSRSHFVK
Sbjct: 6 MQLQLASVLFTFSLGTKTHWYGKTLLHGGAEYRATGRGFVVFHAKFAENYRLYSRSHFVK 185
Query: 364 ALEVALLLIVYIAYGYTKGGSSSFILITISSWFLVMSWLFAPYIFNPSGFEWQKTVEDFD 185
+E+ +LLIV+ +G + G+ ++I IT S WF+V++WLFAP++FNPSGFEWQK V+D+
Sbjct: 186 GIELMILLIVFEIFGQSYRGAIAYIFITFSMWFMVVTWLFAPFLFNPSGFEWQKIVDDWT 365
Query: 184 DWTNWLLYKGGVGVKGDNSWESWWDEEQAHIQTFRGR 74
DW W+ +GG+GV + SWESWW++E ++ R R
Sbjct: 366 DWNKWITNRGGIGVPPEKSWESWWEKEHEPLKYSRKR 476
Score = 113 bits (242), Expect = 9e-025
Identities = 61/122 (50%), Positives = 70/122 (57%)
Frame = +3 / -3
Query: 180 QSSKSSTVFCHSKPEGLKM*GAKSQDITRNQLLIVIRINEDEPPFVYPYAM*TIRRRATS 359
QS +SST+FCHS PEGL GAKSQ T N + V+++ P + P TI + S
Sbjct: 370 QSVQSSTIFCHSNPEGLNRNGAKSQVTTMNHMEKVMKMYAMAPRYDCPKISNTISKIINS 191
Query: 360 SALTK*LRE*SL*FSANFMCRTTKPLPVARYFAPP*RIVLPK*CVLVPSEKVKNTEQNWS 539
LTK LRE S *FSAN TT P PVA Y APP V P VLVP E V T+ N S
Sbjct: 190 MPLTKWLREYSR*FSANLAWNTTNPRPVALYSAPPCSSVFPYQ*VLVPRENVNKTDAN*S 11
Query: 540 CI 545
CI
Sbjct: 10 CI 5
>gb|BE559011.2|BE559011 HV_CEb0022E12f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0022E12f, mRNA sequence
Length = 730
Score = 210 bits (454), Expect(2) = 8e-058
Identities = 87/95 (91%), Positives = 91/95 (95%)
Frame = -1 / +2
Query: 616 TXVPMIMGFILXLGLMKAVFSFITMQLQFCSVFFTFSLGTRTHYFGRTILHGGAKYRATG 437
T VPMIMGFI LGLMKA+FSFITMQLQFCS+FFTFSLGTRTHYFGRTILHGGAK+RATG
Sbjct: 20 TAVPMIMGFISELGLMKAIFSFITMQLQFCSLFFTFSLGTRTHYFGRTILHGGAKHRATG 199
Query: 436 RGFVVRHIKFAENYRLYSRSHFVKALEVALLLIVY 332
RGFVVRHIKFA+NYRLYSRSHFVKALEVALLLI Y
Sbjct: 200 RGFVVRHIKFADNYRLYSRSHFVKALEVALLLIAY 304
Score = 156 bits (336), Expect(2) = 4e-043
Identities = 60/92 (65%), Positives = 69/92 (75%)
Frame = -3 / +1
Query: 620 FXXSPDDNGFHSXAGADEGCF*FYYNAAPVLFGVFHLFAWNKDTLLW*NNPSWRCKVSCY 441
F +DNGF+ A+EG F FY+NA VL +FHLF WN +TL W NNPSW CK SCY
Sbjct: 16 FYSRTNDNGFYFGIRANEGYFQFYHNATAVLLIIFHLFTWN*NTLFWENNPSWWCKASCY 195
Query: 440 WKRFCCSAHKVC*KL*ALFSKSLCQSA*GCSP 345
W RFCCS HK+C*+L*ALFSK LC+SA*GCSP
Sbjct: 196 WTRFCCSPHKIC*QL*ALFSKPLCESA*GCSP 291
Score = 155 bits (334), Expect(2) = 4e-038
Identities = 73/88 (82%), Positives = 75/88 (85%)
Frame = +3 / -2
Query: 333 *TIRRRATSSALTK*LRE*SL*FSANFMCRTTKPLPVARYFAPP*RIVLPK*CVLVPSEK 512
* I RRATSSA TK LRE*SL* SANFM RTTKP PVAR FAPP*RIVLPK*CVLVPSEK
Sbjct: 303 *AISRRATSSAFTKWLRE*SL*LSANFMWRTTKPRPVARCFAPP*RIVLPK*CVLVPSEK 124
Query: 513 VKNTEQNWSCIVIKLKTAFISPSXRMKP 596
VKN EQN SCIVIKLK AFISP+ +KP
Sbjct: 123 VKNNEQNCSCIVIKLKIAFISPNSEIKP 40
Score = 153 bits (329), Expect = 9e-037
Identities = 64/91 (70%), Positives = 73/91 (80%)
Frame = +2 / -1
Query: 332 VNDQEESNLKRFDKVTSRIEPIIFSKLYVPNNKTSSSSTILCTAMKDCSTKVMCPCSKRK 511
V +++ESNLKRF KV SRIEPII SK YV NNKTSSSST+LCT MKDCS K+MC SK K
Sbjct: 304 VGNKQESNLKRFHKVASRIEPIIVSKFYVANNKTSSSSTMLCTTMKDCSPKIMCSSSK*K 125
Query: 512 GEKHRTELELHCNKTKNSLHQPQLXNETHYH 604
GEK EL+LHC+KT+NSLH P N+THYH
Sbjct: 124 GEK**AELQLHCDKTENSLH*P*FRNKTHYH 32
Score = 128 bits (275), Expect = 2e-029
Identities = 62/86 (72%), Positives = 65/86 (75%)
Frame = +1 / -3
Query: 346 GEQPQAL*QSDFENRAYNFQQTLCAEQQNLFQ*HDTLHRHEGLFYQSNVSLFQAKR*KTP 525
GEQPQAL QS FENRAYN QQ LC EQQNL Q*HD LH HEGLF Q+NV FQ KR*K
Sbjct: 290 GEQPQALSQSGFENRAYNCQQILCGEQQNLVQ*HDALHHHEGLFSQNNVF*FQVKR*KIM 111
Query: 526 NRTGAAL**N*KQPSSAPAXE*NPLS 603
+RT AL**N*K PS A +*NPLS
Sbjct: 110 SRTAVAL**N*K*PSLALIPK*NPLS 33
Score = 110 bits (234), Expect(2) = 1e-025
Identities = 55/78 (70%), Positives = 60/78 (76%)
Frame = -2 / +3
Query: 606 R**WVSFXSWG**RLFLVLLQCSSSSVRCFSPFRLEQGHITLVEQSFMAVQSIVLLEEVL 427
+**WV F + G**RLF VL QC+ SS FSPF LE HI L EQSFM VQSIVLL+EVL
Sbjct: 30 Q**WVLFRN*G**RLFSVLSQCNCSSAHYFSPFHLELEHIILGEQSFMVVQSIVLLDEVL 209
Query: 426 LFGT*SLLKIIGSILEVT 373
LF T*+LL IIGSILE T
Sbjct: 210 LFAT*NLLTIIGSILEAT 263
Score = 38.2 bits (77), Expect(2) = 4e-043
Identities = 17/30 (56%), Positives = 21/30 (70%)
Frame = -1 / +3
Query: 367 KALEVALLLIVYIAYGYTKGGSSSFILITI 278
K L + L+ IAYGY KG SS+FIL+TI
Sbjct: 270 KRLRLLSCLLPTIAYGYPKGRSSTFILLTI 359
Score = 33.1 bits (66), Expect(2) = 8e-058
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -1 / +1
Query: 313 KGGSSSFILITISSWFLVMSWLFAPYIF 230
K G ++WF V+ W FAPYIF
Sbjct: 325 KAGHRPLFC*QFNTWFKVIYWTFAPYIF 408
Score = 25.8 bits (50), Expect(2) = 1e-025
Identities = 7/15 (46%), Positives = 12/15 (80%)
Frame = -3 / +2
Query: 332 HCIWIHKRRFIFIYS 288
HC+W+ +R+ I +YS
Sbjct: 305 HCLWLPERQVIDLYS 349
Score = 22.1 bits (42), Expect(2) = 4e-038
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = +2 / -2
Query: 218 TRRVENVRREKPGHNEEPTTD 280
T+ ++NVR + P +N EP+ +
Sbjct: 420 TKVLKNVRCKSPVYNLEPSIE 358
>gb|BG369637.1|BG369637 HVSMEi0025E14f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0025E14f, mRNA sequence
Length = 725
Score = 205 bits (442), Expect(2) = 7e-057
Identities = 73/122 (59%), Positives = 97/122 (79%)
Frame = -1 / +2
Query: 469 LHGGAKYRATGRGFVVRHIKFAENYRLYSRSHFVKALEVALLLIVYIAYGYTKGGSSSFI 290
LHGGA+YRATGRGF+ H KFAENYRLYSRSHFVK +E+ +LLIV+ + + G+ ++I
Sbjct: 2 LHGGAEYRATGRGFLGFHAKFAENYRLYSRSHFVKGIELMILLIVFEIFRQSYRGAIAYI 181
Query: 289 LITISSWFLVMSWLFAPYIFNPSGFEWQKTVEDFDDWTNWLLYKGGVGVKGDNSWESWWD 110
IT S WF+V +WLFAP++FNPSGF+WQK V+D+ DW W+ +GG+GV + SWESWW+
Sbjct: 182 FITFSMWFMVATWLFAPFLFNPSGFQWQKIVDDWTDWNKWISNRGGIGVSPEKSWESWWE 361
Query: 109 EE 104
+E
Sbjct: 362 KE 367
Score = 35.4 bits (71), Expect(2) = 7e-057
Identities = 12/22 (54%), Positives = 18/22 (81%)
Frame = -1 / +2
Query: 82 RGRILETILSLRFLMFQYGIVY 17
RG +LE +L+ RF ++QYG+VY
Sbjct: 395 RGTVLEIVLAGRFFIYQYGLVY 460
>gb|BM374437.2|BM374437 EBpi03_SQ003_J24_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ003_J24 5', mRNA sequence
Length = 573
Score = 218 bits (471), Expect = 2e-056
Identities = 88/163 (53%), Positives = 116/163 (71%)
Frame = -1 / +1
Query: 709 DYSISRXAXFLXXXXLDAALNAQFLXXIGIXTXVPMIMGFILXLGLMKAVFSFITMQLQF 530
D ++ F+ L AL +Q +G +PM+M L G A+ F+ MQLQ
Sbjct: 85 DEGLATGRRFIHNNPLQVALASQSFVQLGFLMALPMMMEIGLERGFRTALSDFVLMQLQL 264
Query: 529 CSVFFTFSLGTRTHYFGRTILHGGAKYRATGRGFVVRHIKFAENYRLYSRSHFVKALEVA 350
SVFFTFSLGT+THY+G+T+LHGGA+YRATGRGFVV H KFAENYRLYSRSHFVK +E+
Sbjct: 265 ASVFFTFSLGTKTHYYGKTLLHGGAEYRATGRGFVVFHAKFAENYRLYSRSHFVKGIELM 444
Query: 349 LLLIVYIAYGYTKGGSSSFILITISSWFLVMSWLFAPYIFNPS 221
+LLIV+ +G + G+ ++I IT S WF+V++WLFAP++FNPS
Sbjct: 445 ILLIVFEIFGQSYRGAIAYIFITFSMWFMVVTWLFAPFLFNPS 573
>gb|AV836635.1|AV836635 AV836635 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare seedling leaves second leaf stage Hordeum
vulgare subsp. vulgare cDNA clone basd19k01, mRNA
sequence
Length = 644
Score = 199 bits (430), Expect = 1e-050
Identities = 84/113 (74%), Positives = 89/113 (78%)
Frame = -1 / +2
Query: 703 SISRXAXFLXXXXLDAALNAQFLXXIGIXTXVPMIMGFILXLGLMKAVFSFITMQLQFCS 524
SI A L ALN QFL IG+ T +PMI+GFIL G++ A SFITMQ Q CS
Sbjct: 305 SIQNRADIQGNEALSIALNTQFLFQIGVFTAIPMILGFILEEGVLTAFVSFITMQFQLCS 484
Query: 523 VFFTFSLGTRTHYFGRTILHGGAKYRATGRGFVVRHIKFAENYRLYSRSHFVK 365
VFFTFSLGTRTHYFGRTILHGGAKYRATGRGFVVRHIKFAENYRLYSRSHFVK
Sbjct: 485 VFFTFSLGTRTHYFGRTILHGGAKYRATGRGFVVRHIKFAENYRLYSRSHFVK 643
Score = 119 bits (254), Expect = 2e-026
Identities = 56/96 (58%), Positives = 64/96 (66%)
Frame = +3 / -3
Query: 369 TK*LRE*SL*FSANFMCRTTKPLPVARYFAPP*RIVLPK*CVLVPSEKVKNTEQNWSCIV 548
TK LRE* *FSAN +CRTTKPLPVA YFAPP IV PK* VLVP E VKNTE +W+C+V
Sbjct: 639 TKWLRE*RR*FSANLICRTTKPLPVALYFAPPCSIVRPK**VLVPRENVKNTEHSWNCMV 460
Query: 549 IKLKTAFISPSXRMKPXXXXXXXXXXXXXKN*AFKA 656
+KL A +PS RMKP +N F+A
Sbjct: 459 MKLTKAVRTPSSRMKPRIIGIAVNTPIWKRNWVFRA 352
>gb|CA018258.1|CA018258 HV08B15r HV Hordeum vulgare subsp. vulgare cDNA clone HV08B15
5-PRIME, mRNA sequence
Length = 654
Score = 168 bits (362), Expect(2) = 5e-047
Identities = 58/102 (56%), Positives = 80/102 (78%)
Frame = -1 / +2
Query: 394 RLYSRSHFVKALEVALLLIVYIAYGYTKGGSSSFILITISSWFLVMSWLFAPYIFNPSGF 215
RLYSRSHFVK +E+ +LL+VY +G T G+ ++I IT+S WF+V +WLFAP++FNPSGF
Sbjct: 11 RLYSRSHFVKGIELMILLVVYEIFGQTYRGAITYIFITVSMWFMVGTWLFAPFLFNPSGF 190
Query: 214 EWQKTVEDFDDWTNWLLYKGGVGVKGDNSWESWWDEEQAHIQ 89
EWQK V+D+ DW W+ +GG+GV + SWESWWD+EQ ++
Sbjct: 191 EWQKIVDDWTDWNKWISNRGGIGVAPEKSWESWWDKEQGPLR 316
Score = 39.1 bits (79), Expect(2) = 5e-047
Identities = 14/22 (63%), Positives = 19/22 (86%)
Frame = -1 / +2
Query: 82 RGRILETILSLRFLMFQYGIVY 17
RG ILE +L+LRF ++QYG+VY
Sbjct: 329 RGTILEILLALRFFIYQYGLVY 394
>gb|CA027060.1|CA027060 HZ57M12r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ57M12
5-PRIME, mRNA sequence
Length = 384
Score = 136 bits (291), Expect(2) = 7e-037
Identities = 45/88 (51%), Positives = 67/88 (76%)
Frame = -1 / +1
Query: 367 KALEVALLLIVYIAYGYTKGGSSSFILITISSWFLVMSWLFAPYIFNPSGFEWQKTVEDF 188
K +E+ +LLIV+ +G + G+ ++I IT S WF+V++WLFAP++FNPSGFEWQK V+D+
Sbjct: 4 KGIELMILLIVFEIFGQSYRGAIAYIFITFSMWFMVVTWLFAPFLFNPSGFEWQKIVDDW 183
Query: 187 DDWTNWLLYKGGVGVKGDNSWESWWDEE 104
W W+ +GG+GV + SWESWW++E
Sbjct: 184 TVWNKWISNRGGIGVSPEKSWESWWEKE 267
Score = 37.7 bits (76), Expect(2) = 7e-037
Identities = 12/22 (54%), Positives = 19/22 (86%)
Frame = -1 / +1
Query: 82 RGRILETILSLRFLMFQYGIVY 17
RG +LE +L++RF ++QYG+VY
Sbjct: 295 RGTVLEIVLAVRFFIYQYGLVY 360
>gb|BU971000.1|BU971000 HB16F02r BC Hordeum vulgare subsp. vulgare cDNA clone HB16F02
5-PRIME, mRNA sequence
Length = 380
Score = 153 bits (328), Expect = 1e-036
Identities = 61/95 (64%), Positives = 75/95 (78%)
Frame = -1 / +3
Query: 664 LDAALNAQFLXXIGIXTXVPMIMGFILXLGLMKAVFSFITMQLQFCSVFFTFSLGTRTHY 485
L A LN QF+ +G T +PMI+ L LG + AV+ F TMQ+ F SVF+TFS+GT++HY
Sbjct: 96 LGAVLNQQFVIQLGFFTALPMILENSLELGFLPAVWDFFTMQMNFSSVFYTFSMGTKSHY 275
Query: 484 FGRTILHGGAKYRATGRGFVVRHIKFAENYRLYSR 380
+GRTILHGGAKYRATGRGFVV+H FAENYRLY+R
Sbjct: 276 YGRTILHGGAKYRATGRGFVVQHKSFAENYRLYAR 380
>gb|BF627189.2|BF627189 HVSMEb0004D01f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0004D01f, mRNA sequence
Length = 765
Score = 124 bits (266), Expect(2) = 2e-033
Identities = 39/68 (57%), Positives = 55/68 (80%)
Frame = -1 / +1
Query: 307 GSSSFILITISSWFLVMSWLFAPYIFNPSGFEWQKTVEDFDDWTNWLLYKGGVGVKGDNS 128
G+ ++I IT S WF+V++WLFAP++FNPSGFEWQK V+D+ DW W+ +GG+GV + S
Sbjct: 10 GAIAYIFITFSMWFMVVTWLFAPFLFNPSGFEWQKIVDDWTDWNKWISNRGGIGVSPEKS 189
Query: 127 WESWWDEE 104
WESWW++E
Sbjct: 190 WESWWEKE 213
Score = 37.7 bits (76), Expect(2) = 2e-033
Identities = 12/22 (54%), Positives = 19/22 (86%)
Frame = -1 / +1
Query: 82 RGRILETILSLRFLMFQYGIVY 17
RG +LE +L++RF ++QYG+VY
Sbjct: 241 RGTVLEIVLAVRFFIYQYGLVY 306
>gb|BU982241.1|BU982241 HA25P01r HA Hordeum vulgare subsp. vulgare cDNA clone HA25P01
5-PRIME, mRNA sequence
Length = 300
Score = 135 bits (289), Expect = 3e-031
Identities = 56/89 (62%), Positives = 65/89 (73%)
Frame = -1 / +3
Query: 643 QFLXXIGIXTXVPMIMGFILXLGLMKAVFSFITMQLQFCSVFFTFSLGTRTHYFGRTILH 464
Q + +G+ +PM+M L G AV FI MQLQ SVFFTF LGT+THY+GRTILH
Sbjct: 33 QSVFQLGLLLVLPMVMEVGLEKGFRTAVGEFIIMQLQLASVFFTFQLGTKTHYYGRTILH 212
Query: 463 GGAKYRATGRGFVVRHIKFAENYRLYSRS 377
GGAKYR TGRGFVV H KFA+NY +YSRS
Sbjct: 213 GGAKYRPTGRGFVVYHAKFADNYHMYSRS 299
>gb|BG418775.1|BG418775 HVSMEk0024G07f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0024G07f, mRNA sequence
Length = 834
Score = 120 bits (257), Expect = 7e-027
Identities = 43/54 (79%), Positives = 49/54 (90%)
Frame = -1 / +2
Query: 178 TNWLLYKGGVGVKGDNSWESWWDEEQAHIQTFRGRILETILSLRFLMFQYGIVY 17
TNWL Y+GG+GVKG+ SWE+WWDEE AHI TFRGRILETILSLRF +FQYG+VY
Sbjct: 2 TNWLFYRGGIGVKGEESWEAWWDEELAHIHTFRGRILETILSLRFFIFQYGVVY 163
>gb|BG415637.1|BG415637 HVSMEk0007E11f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0007E11f, mRNA sequence
Length = 645
Score = 117 bits (250), Expect = 7e-026
Identities = 42/56 (75%), Positives = 49/56 (87%)
Frame = -1 / +1
Query: 184 DWTNWLLYKGGVGVKGDNSWESWWDEEQAHIQTFRGRILETILSLRFLMFQYGIVY 17
DWTNWLLY+GG+GVKG+ SWE+ WDE+ AHI T RGRILETILSLRF + QYG+VY
Sbjct: 4 DWTNWLLYRGGIGVKGEESWEACWDEQLAHIHTLRGRILETILSLRFFIIQYGVVY 171
>gb|AV932586.1|AV932586 AV932586 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal1e06 5', mRNA sequence
Length = 582
Score = 102 bits (218), Expect = 2e-021
Identities = 43/91 (47%), Positives = 57/91 (62%)
Frame = -1 / +1
Query: 709 DYSISRXAXFLXXXXLDAALNAQFLXXIGIXTXVPMIMGFILXLGLMKAVFSFITMQLQF 530
D ++ F+ L AL +Q +G +PM+M L G A+ F+ MQLQ
Sbjct: 310 DEGLATGRRFIHNNPLQVALASQSFVQLGFLMALPMMMEIGLERGFRTALSDFVLMQLQL 489
Query: 529 CSVFFTFSLGTRTHYFGRTILHGGAKYRATG 437
SVFFTFSLGT+THY+G+T+LHGGA+YRATG
Sbjct: 490 ASVFFTFSLGTKTHYYGKTLLHGGAEYRATG 582
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 300,957,736
Number of Sequences: 312970
Number of extensions: 4494076
Number of successful extensions: 36950
Number of sequences better than 1.0e-020: 21
length of database: 58,378,179
effective HSP length: 51
effective length of database: 42,416,709
effective search space used: 7804674456
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)