TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAE37h07.yg.2.1
(642 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY177665.1| Hordeum vulgare subsp. vulgare putative call... 234 2e-069
gb|BE215834.2|BE215834 HV_CEb0008J21f Hordeum vulgare seedl... 220 8e-057
gb|CA031522.1|CA031522 HX10D22r HX Hordeum vulgare subsp. v... 194 6e-053
gb|BJ469639.1|BJ469639 BJ469639 K. Sato unpublished cDNA li... 182 2e-045
gb|BJ473076.1|BJ473076 BJ473076 K. Sato unpublished cDNA li... 182 2e-045
gb|BF616755.1|BF616755 HVSMEc0012I18f Hordeum vulgare seedl... 170 8e-042
gb|BM374437.2|BM374437 EBpi03_SQ003_J24_R pistil, 4 DPA, no... 147 5e-035
gb|BE559011.2|BE559011 HV_CEb0022E12f Hordeum vulgare seedl... 124 3e-034
gb|BG369637.1|BG369637 HVSMEi0025E14f Hordeum vulgare 20 DA... 142 2e-033
gb|AV836635.1|AV836635 AV836635 K. Sato unpublished cDNA li... 126 1e-028
gb|CA018258.1|CA018258 HV08B15r HV Hordeum vulgare subsp. v... 106 3e-025
>gb|AY177665.1| Hordeum vulgare subsp. vulgare putative callose synthase mRNA,
complete cds
Length = 6180
Score = 234 bits (505), Expect(2) = 2e-069
Identities = 96/165 (58%), Positives = 108/165 (65%)
Frame = -2 / +3
Query: 635 AXNAQFLVXXGIXXXVXMIMGXILXLXXMXXVXXFITMQLQXCSVFXXFSLXTXXXXXGX 456
A N QFL G+ + MI+G IL + FITMQ Q CSVF FSL T G
Sbjct: 4695 ALNTQFLFQIGVFTAIPMILGFILEEGVLTAFVSFITMQFQLCSVFFTFSLGTRTHYFGR 4874
Query: 455 XILHXXAKYRATXRGFVVXHIXFAENYRLYSXSHFVKALEVAXXXXXXIAYXXXXGGSSS 276
ILH AKYRAT RGFVV HI FAENYRLYS SHFVK LEVA +AY G+
Sbjct: 4875 TILHGGAKYRATGRGFVVRHIKFAENYRLYSRSHFVKGLEVALLLVIFLAYGFNNSGAIG 5054
Query: 275 FILITISSWFLVMSWLFAPYIFNPSGFEWQKTVEDFDDWTXWXXY 141
+IL++ISSWF+ +SWLFAPY+FNPSGFEWQK VEDF DWT W Y
Sbjct: 5055 YILLSISSWFMALSWLFAPYVFNPSGFEWQKVVEDFRDWTNWLFY 5189
Score = 173 bits (373), Expect = 7e-043
Identities = 99/212 (46%), Positives = 110/212 (51%)
Frame = +1 / -3
Query: 1 TXPY*NMRNLXLXIVSRIRPLNVWICACSSSHQDSQLXXXXXXXXXL*XXXXVQSSKSST 180
T PY ++NL L IVS I P V ICA SSSHQ SQL * VQS KSST
Sbjct: 5329 TTPYWKIKNLKLSIVSSILPRKV*ICASSSSHQASQLSSPLTPIPPR*KSQFVQSLKSST 5150
Query: 181 VFCHSKPEGLKM*GAKSQDITRNQLLIVIRINEDEPPXXXXYAXXXIRRRATSSALTK*L 360
FCHS P+GL GAKSQ+ NQLL+ +I P A R ATSS TK L
Sbjct: 5149 TFCHSNPDGLNTYGAKSQERAINQLLMESKI*PIAPLLLKP*ARKITNRSATSSPFTKWL 4970
Query: 361 XE*SL*FSANXMCXTTKPLXVARYFAXX*RIXLPX*XXXVXSEKXKNTEQXWSCIVIKXX 540
E* *FSAN +C TTKPL VA YFA I P * V E KNTE W+C+V+K
Sbjct: 4969 RE*RR*FSANLICRTTKPLPVALYFAPPCSIVRPK**VLVPRENVKNTEHSWNCMVMKLT 4790
Query: 541 TXXIXXSXRMXPIIIXTXXKIPXXTKN*AFXA 636
S RM P II P +N F A
Sbjct: 4789 KAVRTPSSRMKPRIIGIAVNTPIWKRNWVFRA 4694
Score = 68.0 bits (142), Expect(2) = 2e-025
Identities = 30/84 (35%), Positives = 49/84 (58%)
Frame = +3 / -2
Query: 6 AILKHEKSXXXDCLKNTSSECLDMRLLLIPPRFPTXXTLYTNSTFIXXPXCPVIKVLNSL 185
+IL+++KS + +E ++M IPP FP + N+T + P CPV ++L+ L
Sbjct: 5324 SILENKKS*TKYSFQYPPAEGVNMCQFFIPPSFPAFFSFNPNTTSVKKPVCPVSEILDDL 5145
Query: 186 LPLETRRVENVRREKPGHNEEPTT 257
LP ++RRVE V +KP + +P T
Sbjct: 5144 LPFKSRRVEYVWSKKPRKSHKPAT 5073
Score = 67.5 bits (141), Expect(2) = 2e-025
Identities = 34/105 (32%), Positives = 51/105 (48%)
Frame = +3 / -2
Query: 321 QEESNLKRFDKVTXRIEPIIFSKXYVPXNKTSXSSTILCXXMKDXXTXXXXXCXKRKXXK 500
Q++ NL+ F K+ I+ +I SK +P +KT S +ILC M+ T C K + K
Sbjct: 5009 QQKCNLQPFHKMASGIKTVILSKLNMPYHKTPTSCSILCTSMQYCATKIVSPCPKGEREK 4830
Query: 501 HRTXLELHCNKXXNXXHXXQXQNXXHYHRXXXXNTXLXQKLSIXS 635
+ LELH N+ Q+ HR +T L +KL + S
Sbjct: 4829 YGA*LELHGNEADKSRQDTFFQDET*NHRNCSKHTNLEKKLGVQS 4695
Score = 48.3 bits (99), Expect(2) = 2e-069
Identities = 19/25 (76%), Positives = 20/25 (80%)
Frame = -2 / +3
Query: 80 AHIQTFRGRILETIXXXRFLMFQYG 6
AHI TFRGRILETI RF +FQYG
Sbjct: 5250 AHIHTFRGRILETILSLRFFIFQYG 5324
>gb|BE215834.2|BE215834 HV_CEb0008J21f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0008J21f, mRNA sequence
Length = 504
Score = 220 bits (474), Expect = 8e-057
Identities = 92/158 (58%), Positives = 104/158 (65%)
Frame = -2 / +1
Query: 635 AXNAQFLVXXGIXXXVXMIMGXILXLXXMXXVXXFITMQLQXCSVFXXFSLXTXXXXXGX 456
A N QFL G+ + MI+G IL + FITMQ Q CSVF FSL T G
Sbjct: 31 ALNTQFLFQIGVFTAIPMILGFILEEGVLTAFVSFITMQFQLCSVFFTFSLGTRTHYFGR 210
Query: 455 XILHXXAKYRATXRGFVVXHIXFAENYRLYSXSHFVKALEVAXXXXXXIAYXXXXGGSSS 276
ILH AKYRAT RGFVV HI FAENYRLYS SHFVK LEVA +AY G+
Sbjct: 211 TILHGGAKYRATGRGFVVRHIKFAENYRLYSRSHFVKGLEVALLLVIFLAYGFNNSGAIG 390
Query: 275 FILITISSWFLVMSWLFAPYIFNPSGFEWQKTVEDFDD 162
+IL++ISSWF+ +SWLFAPY+FNPSGFEWQK VEDF D
Sbjct: 391 YILLSISSWFMALSWLFAPYVFNPSGFEWQKVVEDFRD 504
Score = 129 bits (277), Expect = 1e-029
Identities = 73/158 (46%), Positives = 82/158 (51%)
Frame = +1 / -2
Query: 163 SSKSSTVFCHSKPEGLKM*GAKSQDITRNQLLIVIRINEDEPPXXXXYAXXXIRRRATSS 342
S KSST FCHS P+GL GAKSQ+ NQLL+ +I P A R ATSS
Sbjct: 503 SLKSSTTFCHSNPDGLNTYGAKSQERAINQLLMESKI*PIAPLLLKP*ARKITNRSATSS 324
Query: 343 ALTK*LXE*SL*FSANXMCXTTKPLXVARYFAXX*RIXLPX*XXXVXSEKXKNTEQXWSC 522
TK L E* *FSAN +C TTKPL VA YFA I P * V E KNTE W+C
Sbjct: 323 PFTKWLRE*RR*FSANLICRTTKPLPVALYFAPPCSIVRPK**VLVPRENVKNTEHSWNC 144
Query: 523 IVIKXXTXXIXXSXRMXPIIIXTXXKIPXXTKN*AFXA 636
+V+K S RM P II P +N F A
Sbjct: 143 MVMKLTKAVRTPSSRMKPRIIGIAVNTPIWKRNWVFRA 30
>gb|CA031522.1|CA031522 HX10D22r HX Hordeum vulgare subsp. vulgare cDNA clone HX10D22
5-PRIME, mRNA sequence
Length = 478
Score = 194 bits (419), Expect(2) = 6e-053
Identities = 78/122 (63%), Positives = 86/122 (70%)
Frame = -2 / +3
Query: 506 SVFXXFSLXTXXXXXGXXILHXXAKYRATXRGFVVXHIXFAENYRLYSXSHFVKALEVAX 327
SVF FSL T G ILH AKYRAT RGFVV HI FAENYRLYS SHFVK LEVA
Sbjct: 3 SVFFTFSLGTRTHYFGRTILHGGAKYRATGRGFVVRHIKFAENYRLYSRSHFVKGLEVAL 182
Query: 326 XXXXXIAYXXXXGGSSSFILITISSWFLVMSWLFAPYIFNPSGFEWQKTVEDFDDWTXWX 147
+AY G+ +IL++ISSWF+ +SWLFAPY+FNPSGFEWQK VEDF DWT W
Sbjct: 183 LLVIFLAYGFNNSGAIGYILLSISSWFMALSWLFAPYVFNPSGFEWQKVVEDFRDWTNWL 362
Query: 146 XY 141
Y
Sbjct: 363 FY 368
Score = 133 bits (285), Expect = 9e-031
Identities = 80/158 (50%), Positives = 85/158 (53%)
Frame = +1 / -1
Query: 34 LXIVSRIRPLNVWICACSSSHQDSQLXXXXXXXXXL*XXXXVQSSKSSTVFCHSKPEGLK 213
L IVS I P V ICA SSSHQ SQL * VQS KSST FCHS P+GL
Sbjct: 475 LSIVSSILPRKV*ICASSSSHQASQLSSPLTPIPPR*KSQFVQSLKSSTTFCHSNPDGLN 296
Query: 214 M*GAKSQDITRNQLLIVIRINEDEPPXXXXYAXXXIRRRATSSALTK*LXE*SL*FSANX 393
GAKSQ+ NQLL+ +I P A R ATSS TK L E* *FSAN
Sbjct: 295 TYGAKSQERAINQLLMESKI*PIAPLLLKP*ARKITNRSATSSPFTKWLRE*RR*FSANL 116
Query: 394 MCXTTKPLXVARYFAXX*RIXLPX*XXXVXSEKXKNTE 507
+C TTKPL VA YFA I P * V E KNTE
Sbjct: 115 ICRTTKPLPVALYFAPPCSIVRPK**VLVPRENVKNTE 2
Score = 32.7 bits (65), Expect(2) = 6e-053
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = -2 / +3
Query: 80 AHIQTFRGRILETI 39
AHI TFRGRILETI
Sbjct: 429 AHIHTFRGRILETI 470
>gb|BJ469639.1|BJ469639 BJ469639 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal27j14 5', mRNA sequence
Length = 604
Score = 182 bits (392), Expect = 2e-045
Identities = 76/162 (46%), Positives = 96/162 (59%)
Frame = -2 / +1
Query: 635 AXNAQFLVXXGIXXXVXMIMGXILXLXXMXXVXXFITMQLQXCSVFXXFSLXTXXXXXGX 456
A +Q V G + M+M L + F+ MQLQ SVF FSL T G
Sbjct: 1 ALASQSFVQLGFLMALPMMMEIGLERGFRTALSDFVLMQLQLASVFFTFSLGTKTHYYGK 180
Query: 455 XILHXXAKYRATXRGFVVXHIXFAENYRLYSXSHFVKALEVAXXXXXXIAYXXXXGGSSS 276
+LH A+YRAT RGFVV H FAENYRLYS SHFVK +E+ + G+ +
Sbjct: 181 TLLHGGAEYRATGRGFVVFHAKFAENYRLYSRSHFVKGIELMILLIVFEIFGQSYRGAIA 360
Query: 275 FILITISSWFLVMSWLFAPYIFNPSGFEWQKTVEDFDDWTXW 150
+I IT S WF+V++WLFAP++FNPSGFEWQK V+D+ DW W
Sbjct: 361 YIFITFSMWFMVVTWLFAPFLFNPSGFEWQKIVDDWTDWNKW 486
>gb|BJ473076.1|BJ473076 BJ473076 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal40n15 5', mRNA sequence
Length = 614
Score = 182 bits (392), Expect = 2e-045
Identities = 76/162 (46%), Positives = 96/162 (59%)
Frame = -2 / +3
Query: 635 AXNAQFLVXXGIXXXVXMIMGXILXLXXMXXVXXFITMQLQXCSVFXXFSLXTXXXXXGX 456
A +Q V G + M+M L + F+ MQLQ SVF FSL T G
Sbjct: 12 ALASQSFVQLGFLMALPMMMEIGLERGFRTALSDFVLMQLQLASVFFTFSLGTKTHYYGK 191
Query: 455 XILHXXAKYRATXRGFVVXHIXFAENYRLYSXSHFVKALEVAXXXXXXIAYXXXXGGSSS 276
+LH A+YRAT RGFVV H FAENYRLYS SHFVK +E+ + G+ +
Sbjct: 192 TLLHGGAEYRATGRGFVVFHAKFAENYRLYSRSHFVKGIELMILLIVFEIFGQSYRGAIA 371
Query: 275 FILITISSWFLVMSWLFAPYIFNPSGFEWQKTVEDFDDWTXW 150
+I IT S WF+V++WLFAP++FNPSGFEWQK V+D+ DW W
Sbjct: 372 YIFITFSMWFMVVTWLFAPFLFNPSGFEWQKIVDDWTDWNKW 497
>gb|BF616755.1|BF616755 HVSMEc0012I18f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0012I18f, mRNA sequence
Length = 762
Score = 170 bits (365), Expect = 8e-042
Identities = 67/125 (53%), Positives = 82/125 (65%)
Frame = -2 / +3
Query: 524 MQLQXCSVFXXFSLXTXXXXXGXXILHXXAKYRATXRGFVVXHIXFAENYRLYSXSHFVK 345
MQLQ SV FSL T G +LH A+YRAT RGFVV H FAENYRLYS SHFVK
Sbjct: 6 MQLQLASVLFTFSLGTKTHWYGKTLLHGGAEYRATGRGFVVFHAKFAENYRLYSRSHFVK 185
Query: 344 ALEVAXXXXXXIAYXXXXGGSSSFILITISSWFLVMSWLFAPYIFNPSGFEWQKTVEDFD 165
+E+ + G+ ++I IT S WF+V++WLFAP++FNPSGFEWQK V+D+
Sbjct: 186 GIELMILLIVFEIFGQSYRGAIAYIFITFSMWFMVVTWLFAPFLFNPSGFEWQKIVDDWT 365
Query: 164 DWTXW 150
DW W
Sbjct: 366 DWNKW 380
>gb|BM374437.2|BM374437 EBpi03_SQ003_J24_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ003_J24 5', mRNA sequence
Length = 573
Score = 147 bits (316), Expect = 5e-035
Identities = 65/145 (44%), Positives = 83/145 (57%)
Frame = -2 / +1
Query: 635 AXNAQFLVXXGIXXXVXMIMGXILXLXXMXXVXXFITMQLQXCSVFXXFSLXTXXXXXGX 456
A +Q V G + M+M L + F+ MQLQ SVF FSL T G
Sbjct: 139 ALASQSFVQLGFLMALPMMMEIGLERGFRTALSDFVLMQLQLASVFFTFSLGTKTHYYGK 318
Query: 455 XILHXXAKYRATXRGFVVXHIXFAENYRLYSXSHFVKALEVAXXXXXXIAYXXXXGGSSS 276
+LH A+YRAT RGFVV H FAENYRLYS SHFVK +E+ + G+ +
Sbjct: 319 TLLHGGAEYRATGRGFVVFHAKFAENYRLYSRSHFVKGIELMILLIVFEIFGQSYRGAIA 498
Query: 275 FILITISSWFLVMSWLFAPYIFNPS 201
+I IT S WF+V++WLFAP++FNPS
Sbjct: 499 YIFITFSMWFMVVTWLFAPFLFNPS 573
>gb|BE559011.2|BE559011 HV_CEb0022E12f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0022E12f, mRNA sequence
Length = 730
Score = 124 bits (266), Expect(3) = 3e-034
Identities = 56/87 (64%), Positives = 60/87 (68%)
Frame = -2 / +2
Query: 590 VXMIMGXILXLXXMXXVXXFITMQLQXCSVFXXFSLXTXXXXXGXXILHXXAKYRATXRG 411
V MIMG I L M + FITMQLQ CS+F FSL T G ILH AK+RAT RG
Sbjct: 26 VPMIMGFISELGLMKAIFSFITMQLQFCSLFFTFSLGTRTHYFGRTILHGGAKHRATGRG 205
Query: 410 FVVXHIXFAENYRLYSXSHFVKALEVA 330
FVV HI FA+NYRLYS SHFVKALEVA
Sbjct: 206 FVVRHIKFADNYRLYSRSHFVKALEVA 286
Score = 105 bits (223), Expect = 3e-022
Identities = 44/92 (47%), Positives = 52/92 (56%)
Frame = -1 / +1
Query: 600 FXXSXDDNGXHSXAGXDXXCXXLYYNAAPXLFGVFXLFAXNXXXLXW*XNPSXXCKVSCY 421
F +DNG + + Y+NA L +F LF N L W NPS CK SCY
Sbjct: 16 FYSRTNDNGFYFGIRANEGYFQFYHNATAVLLIIFHLFTWN*NTLFWENNPSWWCKASCY 195
Query: 420 XXRFCCXAHXVC*KL*ALFXKSLCQSA*GCSP 325
RFCC H +C*+L*ALF K LC+SA*GCSP
Sbjct: 196 WTRFCCSPHKIC*QL*ALFSKPLCESA*GCSP 291
Score = 100 bits (213), Expect(2) = 1e-021
Identities = 56/94 (59%), Positives = 58/94 (61%)
Frame = +1 / -2
Query: 319 IRRRATSSALTK*LXE*SL*FSANXMCXTTKPLXVARYFAXX*RIXLPX*XXXVXSEKXK 498
I RRATSSA TK L E*SL* SAN M TTKP VAR FA *RI LP * V SEK K
Sbjct: 297 ISRRATSSAFTKWLRE*SL*LSANFMWRTTKPRPVARCFAPP*RIVLPK*CVLVPSEKVK 118
Query: 499 NTEQXWSCIVIKXXTXXIXXSXRMXPIIIXTXXK 600
N EQ SCIVIK I + + PIII T K
Sbjct: 117 NNEQNCSCIVIKLKIAFISPNSEIKPIIIGTAVK 16
Score = 32.2 bits (64), Expect(3) = 3e-034
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -2 / +1
Query: 257 SSWFLVMSWLFAPYIF 210
++WF V+ W FAPYIF
Sbjct: 361 NTWFKVIYWTFAPYIF 408
Score = 25.8 bits (50), Expect(3) = 3e-034
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -2 / +3
Query: 347 KALEVAXXXXXXIAYXXXXGGSSSFILITI 258
K L + IAY G SS+FIL+TI
Sbjct: 270 KRLRLLSCLLPTIAYGYPKGRSSTFILLTI 359
Score = 22.1 bits (42), Expect(2) = 1e-021
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = +3 / -2
Query: 198 TRRVENVRREKPGHNEEPTTD 260
T+ ++NVR + P +N EP+ +
Sbjct: 420 TKVLKNVRCKSPVYNLEPSIE 358
>gb|BG369637.1|BG369637 HVSMEi0025E14f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0025E14f, mRNA sequence
Length = 725
Score = 142 bits (305), Expect = 2e-033
Identities = 53/100 (53%), Positives = 68/100 (68%)
Frame = -2 / +2
Query: 449 LHXXAKYRATXRGFVVXHIXFAENYRLYSXSHFVKALEVAXXXXXXIAYXXXXGGSSSFI 270
LH A+YRAT RGF+ H FAENYRLYS SHFVK +E+ + G+ ++I
Sbjct: 2 LHGGAEYRATGRGFLGFHAKFAENYRLYSRSHFVKGIELMILLIVFEIFRQSYRGAIAYI 181
Query: 269 LITISSWFLVMSWLFAPYIFNPSGFEWQKTVEDFDDWTXW 150
IT S WF+V +WLFAP++FNPSGF+WQK V+D+ DW W
Sbjct: 182 FITFSMWFMVATWLFAPFLFNPSGFQWQKIVDDWTDWNKW 301
>gb|AV836635.1|AV836635 AV836635 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare seedling leaves second leaf stage Hordeum
vulgare subsp. vulgare cDNA clone basd19k01, mRNA
sequence
Length = 644
Score = 126 bits (270), Expect = 1e-028
Identities = 56/97 (57%), Positives = 60/97 (61%)
Frame = -2 / +2
Query: 635 AXNAQFLVXXGIXXXVXMIMGXILXLXXMXXVXXFITMQLQXCSVFXXFSLXTXXXXXGX 456
A N QFL G+ + MI+G IL + FITMQ Q CSVF FSL T G
Sbjct: 353 ALNTQFLFQIGVFTAIPMILGFILEEGVLTAFVSFITMQFQLCSVFFTFSLGTRTHYFGR 532
Query: 455 XILHXXAKYRATXRGFVVXHIXFAENYRLYSXSHFVK 345
ILH AKYRAT RGFVV HI FAENYRLYS SHFVK
Sbjct: 533 TILHGGAKYRATGRGFVVRHIKFAENYRLYSRSHFVK 643
>gb|CA018258.1|CA018258 HV08B15r HV Hordeum vulgare subsp. vulgare cDNA clone HV08B15
5-PRIME, mRNA sequence
Length = 654
Score = 106 bits (226), Expect(2) = 3e-025
Identities = 38/75 (50%), Positives = 51/75 (68%)
Frame = -2 / +2
Query: 374 RLYSXSHFVKALEVAXXXXXXIAYXXXXGGSSSFILITISSWFLVMSWLFAPYIFNPSGF 195
RLYS SHFVK +E+ + G+ ++I IT+S WF+V +WLFAP++FNPSGF
Sbjct: 11 RLYSRSHFVKGIELMILLVVYEIFGQTYRGAITYIFITVSMWFMVGTWLFAPFLFNPSGF 190
Query: 194 EWQKTVEDFDDWTXW 150
EWQK V+D+ DW W
Sbjct: 191 EWQKIVDDWTDWNKW 235
Score = 28.1 bits (55), Expect(2) = 3e-025
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -2 / +2
Query: 62 RGRILETIXXXRFLMFQYG 6
RG ILE + RF ++QYG
Sbjct: 329 RGTILEILLALRFFIYQYG 385
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 157,759,245
Number of Sequences: 312970
Number of extensions: 1369236
Number of successful extensions: 11033
Number of sequences better than 1.0e-020: 12
length of database: 58,378,179
effective HSP length: 51
effective length of database: 42,416,709
effective search space used: 6871506858
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)