TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AB021176.2.1
(1318 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BM370613.2|BM370613 EBro08_SQ004_L22_R root, 3 week, dro... 242 1e-073
gb|BF254580.2|BF254580 HVSMEf0004G18f Hordeum vulgare seedl... 260 1e-068
gb|CB882390.1|CB882390 HL01L20w HL Hordeum vulgare subsp. v... 240 3e-067
gb|BF253765.2|BF253765 HVSMEf0002B02f Hordeum vulgare seedl... 94 3e-037
gb|CA016489.1|CA016489 HV08K17u HV Hordeum vulgare subsp. v... 155 7e-037
gb|CA016225.1|CA016225 HV09K18u HV Hordeum vulgare subsp. v... 154 1e-036
gb|CA018793.1|CA018793 HV09K18r HV Hordeum vulgare subsp. v... 91 4e-036
gb|BQ767003.1|BQ767003 EBro08_SQ007_P13_R root, 3 week, dro... 136 3e-031
gb|BF258050.2|BF258050 HVSMEf0014J23f Hordeum vulgare seedl... 90 2e-025
gb|BM370277.2|BM370277 EBro08_SQ003_L08_R root, 3 week, dro... 95 2e-025
>gb|BM370613.2|BM370613 EBro08_SQ004_L22_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ004_L22 5', mRNA sequence
Length = 538
Score = 242 bits (523), Expect(2) = 1e-073
Identities = 100/125 (80%), Positives = 111/125 (88%)
Frame = +1 / +1
Query: 658 AAWTSGAVPALSVTRTSAANGVLVSLDGRFTIRANAVPITEEESRVHRYGVTADDCLAHL 837
A WTS VP LSVTRT AANGVLV++D +F+IRANAVPITEEESRVHRYGVT DDCLAHL
Sbjct: 7 AKWTSSRVPELSVTRTKAANGVLVAVDRKFSIRANAVPITEEESRVHRYGVTDDDCLAHL 186
Query: 838 DLAFKFGALTADVHGVVGQTYRSDYVNRFDVKASMPTMGGDSNYTTSSLFAADCAVARYA 1017
+LAFKF ALT DVHGVVGQTYRSDYVN FDV+ASMPTMGGD+ +TTSS+FAADC+VARY
Sbjct: 187 ELAFKFNALTDDVHGVVGQTYRSDYVNHFDVRASMPTMGGDATFTTSSIFAADCSVARYG 366
Query: 1018 PSGGS 1032
S G+
Sbjct: 367 VSRGN 381
Score = 193 bits (416), Expect(2) = 1e-056
Identities = 93/119 (78%), Positives = 101/119 (84%)
Frame = -3 / -3
Query: 1013 *RATAQSAAKRLDVV*LLSPPMVGIEALTSNRLT*SERYVWPTTPCTSAVSAPNLKARSR 834
*RAT QSAAK L+VV + SPPMVG+EALTS LT*SER V PTTP TS+VSA NLKA SR
Sbjct: 362 *RATLQSAAKMLEVVKVASPPMVGMEALTSKWLT*SER*VCPTTPWTSSVSALNLKASSR 183
Query: 833 CARQSSAVTPYRCTLDSSSVMGTALALMVNLPSSETSTPLAALVRVTDSAGTAPDVHAA 657
CARQSS+VTP RCTLDSSSVMGTALALM+N S+ TSTPLAALVRVTDS+GT DVH A
Sbjct: 182 CARQSSSVTP*RCTLDSSSVMGTALALMLNFLSTATSTPLAALVRVTDSSGTRLDVHLA 6
Score = 159 bits (342), Expect(2) = 1e-041
Identities = 70/116 (60%), Positives = 82/116 (70%)
Frame = -2 / -2
Query: 1005 HGAVSGEEAGRGVVAVPSHGGH*GLDIEPVDVVGAVRLADHAVHVGGERAELEGQVKVRE 826
H AV GE AG G + +HGGH G ++ VDVVGAV L+DH V V GER +LEGQ++VR
Sbjct: 354 HAAVRGENAGGGEGGISTHGGHGGPHVKMVDVVGAVGLSDHTVDVVGERVKLEGQLEVR* 175
Query: 825 AVVGRDAVPVHPGLLLCDGHGVGPDGEPAVERDEHAVGRAGAGDGQRRHGAGRPRG 658
AV+ DAV VHP LL DGHGVGPD E +V D+HAVGR GAGD Q + AGRP G
Sbjct: 174 AVIVSDAVAVHPRFLLGDGHGVGPDAELSVNGDQHAVGRLGAGDRQLGYAAGRPLG 7
Score = 126 bits (269), Expect(2) = 7e-033
Identities = 54/90 (60%), Positives = 57/90 (63%)
Frame = +2 / +2
Query: 737 TAGSPSGPTPCPSQRRSPGCTGTASRPTTASRTLTWPSSSARSPPTCTAWSARRTAPTTS 916
T S SGPTPCPS RR+ GCT TAS TA RT +WPSS RSP T T WS R TAPTTS
Sbjct: 86 TESSASGPTPCPSPRRNRGCTATASLTMTA*RTSSWPSSLTRSPTTSTVWSDRPTAPTTS 265
Query: 917 TGSMSRPQCPPWEGTATTPRPASSPLTAPW 1006
T P CPPW +P PA SP TA W
Sbjct: 266 TILT*GPPCPPWVEMPPSPPPAFSPRTAAW 355
Score = 55.6 bits (115), Expect(2) = 1e-073
Identities = 21/33 (63%), Positives = 27/33 (81%)
Frame = +1 / +1
Query: 1042 DDGVAMVSEIAGITCASGMGGQGVVCKK*PRRC 1140
+DG A++SE+AG+TCASGM G+ VVCKK* C
Sbjct: 379 NDGAAVLSELAGVTCASGMDGKSVVCKK*NASC 477
Score = 47.8 bits (98), Expect(2) = 1e-056
Identities = 20/28 (71%), Positives = 21/28 (75%)
Frame = -3 / -3
Query: 1127 YFLHTTPWPPMPLAQVMPAISDTIATPS 1044
YFLHTT P MPLAQV PA SD+ A PS
Sbjct: 464 YFLHTTLLPSMPLAQVTPASSDSTAAPS 381
Score = 35.4 bits (71), Expect(2) = 7e-033
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = +2 / +2
Query: 1070 SLASPVPVAWVAKAWCARS 1126
SL SP PVAW AK CA+S
Sbjct: 407 SLVSPAPVAWTAKVLCAKS 463
Score = 31.3 bits (62), Expect(2) = 1e-041
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -1 / -1
Query: 1126 TSCTPRLGHPCHWHR*CQRS 1067
T CT PCHW R* QR+
Sbjct: 463 TFCTQHFCRPCHWRR*HQRA 404
>gb|BF254580.2|BF254580 HVSMEf0004G18f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEf0004G18f, mRNA sequence
Length = 852
Score = 260 bits (562), Expect = 1e-068
Identities = 105/177 (59%), Positives = 126/177 (71%)
Frame = +1 / +3
Query: 499 MSRDFTWIQAIAVLFDGHELYVGARKTAAWDDDVDRMELTLDGEPVRLLPGTDAAWTSGA 678
MSRDFTWIQA+ + F H LY+GA+KT W++DVDR++L DGE + + G A W S +
Sbjct: 18 MSRDFTWIQALGIRFADHRLYIGAQKTTKWNNDVDRLDLAFDGESINVAAGVGAKWQSTS 197
Query: 679 VPALSVTRTSAANGVLVSLDGRFTIRANAVPITEEESRVHRYGVTADDCLAHLDLAFKFG 858
PAL+VTRT+ NGV V L G F I A VPITEE+SR H YGVT DD LAHLD+ FKF
Sbjct: 198 DPALTVTRTTVTNGVRVQLKGVFDIMAKVVPITEEDSRTHNYGVTEDDSLAHLDIGFKFD 377
Query: 859 ALTADVHGVVGQTYRSDYVNRFDVKASMPTMGGDSNYTTSSLFAADCAVARYAPSGG 1029
LT DVHGV+GQTYRSDYVN+ V A+MP MGG S+Y +FA DC VAR+ S G
Sbjct: 378 DLTDDVHGVLGQTYRSDYVNKLSVSANMPVMGGVSSYIXYDIFAIDCKVARFGRSAG 548
Score = 142 bits (305), Expect = 4e-033
Identities = 79/168 (47%), Positives = 93/168 (55%)
Frame = -3 / -3
Query: 1007 ATAQSAAKRLDVV*LLSPPMVGIEALTSNRLT*SERYVWPTTPCTSAVSAPNLKARSRCA 828
AT QS AK +*L +PP+ G+ ALT + LT*SER V P TP TS+V + NLK SRCA
Sbjct: 526 ATLQSMAKMS*XM*LDTPPITGMLALTLSLLT*SER*V*PRTP*TSSVRSSNLKPMSRCA 347
Query: 827 RQSSAVTPYRCTLDSSSVMGTALALMVNLPSSETSTPLAALVRVTDSAGTAPDVHAASVP 648
R SS+VTP +SSSV+GT LA+M N P S T TP +V VT AG+ D H A P
Sbjct: 346 RLSSSVTP*LWVRESSSVIGTTLAMMSNTPLSWTLTPFVTVVLVTVRAGSLVDCHLAPTP 167
Query: 647 GRRRTGXXXXXXXXXXXXXSHAAVFLAPT*SSWPSKSTAMAWIHVKSR 504
H VF AP *S +K AWI VKSR
Sbjct: 166 AATLIDSPSKAKSRRSTSLFHLVVFWAPM*SR*SAKRMPRAWIQVKSR 23
Score = 135 bits (290), Expect = 4e-031
Identities = 70/170 (41%), Positives = 91/170 (53%)
Frame = -2 / -2
Query: 1005 HGAVSGEEAGRGVVAVPSHGGH*GLDIEPVDVVGAVRLADHAVHVGGERAELEGQVKVRE 826
H AV GE+ V +H H G D E VD+V A+ L + V++ GE ELE V++ E
Sbjct: 524 HLAVYGEDVVXDVAGYATHHRHVGADTELVDIVRAIGLTEDTVNIVGEVVELEADVQMCE 345
Query: 825 AVVGRDAVPVHPGLLLCDGHGVGPDGEPAVERDEHAVGRAGAGDGQRRHGAGRPRGVGSR 646
AVV A+ V G+LLC H + D E ++ D HAV G DGQ R G P +
Sbjct: 344 AVVLCHAIVVGAGVLLCYRHHLSHDVEHTLKLDPHAVCHGGPCDGQGRIAGGLPLSTDAS 165
Query: 645 QEAHGLAVQGELHAVDVVVPRGRLPGADVELVAVEEHGDGLDPREVPGHA 496
+ +V+G++ AVDVVVP L GADVE V E LDP EV H+
Sbjct: 164 SDVDRFSVEGQVEAVDVVVPLSGLLGADVESVISEADAQSLDPGEVAAHS 15
>gb|CB882390.1|CB882390 HL01L20w HL Hordeum vulgare subsp. vulgare cDNA clone HL01L20
3-PRIME, mRNA sequence
Length = 562
Score = 240 bits (519), Expect(2) = 3e-067
Identities = 95/166 (57%), Positives = 118/166 (71%)
Frame = +1 / +3
Query: 499 MSRDFTWIQAIAVLFDGHELYVGARKTAAWDDDVDRMELTLDGEPVRLLPGTDAAWTSGA 678
MSRDFTWIQA+ + F H LY+GA+KT W++DVDR+E + DGE + + A W S
Sbjct: 63 MSRDFTWIQALGIRFADHRLYMGAQKTTKWNNDVDRLEFSFDGESINIAADIGAKWQSSV 242
Query: 679 VPALSVTRTSAANGVLVSLDGRFTIRANAVPITEEESRVHRYGVTADDCLAHLDLAFKFG 858
P L+VTRT+ NGV V L G F I A VPIT+E+SR+H YGVT DD LAHLD+ FKF
Sbjct: 243 APGLTVTRTTVTNGVRVQLKGVFDIMAKVVPITKEDSRIHNYGVTEDDTLAHLDIGFKFY 422
Query: 859 ALTADVHGVVGQTYRSDYVNRFDVKASMPTMGGDSNYTTSSLFAAD 996
LT DVHGV+GQTYRSDYVN+ V A+MP MGG +Y +S +F+ D
Sbjct: 423 DLTDDVHGVLGQTYRSDYVNKLSVSANMPVMGGVXSYISSDIFSTD 560
Score = 128 bits (275), Expect(2) = 2e-032
Identities = 67/167 (40%), Positives = 87/167 (52%)
Frame = -2 / -3
Query: 996 VSGEEAGRGVVAVPSHGGH*GLDIEPVDVVGAVRLADHAVHVGGERAELEGQVKVREAVV 817
V GE+ G V +H H G E VDVV AV LA+ V++ GE E E V++RE V+
Sbjct: 560 VGGEDVGGDVARYATHHWHVGAYAELVDVVRAVGLAEDTVNIIGEVIEFEPDVQMREGVI 381
Query: 816 GRDAVPVHPGLLLCDGHGVGPDGEPAVERDEHAVGRAGAGDGQRRHGAGRPRGVGSRQEA 637
A+ V G+LLCDG+ + D E ++ D H VG G D Q G P +
Sbjct: 380 LCHAIVVDAGVLLCDGNHLSHDVEHTLKLDPHTVGHGGPSDSQPGCDTGLPLCPDVCSDI 201
Query: 636 HGLAVQGELHAVDVVVPRGRLPGADVELVAVEEHGDGLDPREVPGHA 496
+++GEL AVDVVVP G L G VE V + LDP EV H+
Sbjct: 200 DRFSIEGELEAVDVVVPLGSLLGTHVETVISKPDAQSLDPGEVTAHS 60
Score = 118 bits (252), Expect(2) = 4e-028
Identities = 61/114 (53%), Positives = 73/114 (64%)
Frame = -3 / -1
Query: 998 QSAAKRLDVV*LLSPPMVGIEALTSNRLT*SERYVWPTTPCTSAVSAPNLKARSRCARQS 819
QS K + +*L +PP+ G+ ALT + LT*SER VWP TP TS+V + NL SRCAR S
Sbjct: 562 QSVEKMSEEM*LXTPPITGMLALTLSLLT*SER*VWPRTP*TSSVRS*NLNPMSRCARVS 383
Query: 818 SAVTPYRCTLDSSSVMGTALALMVNLPSSETSTPLAALVRVTDSAGTAPDVHAA 657
S+VTP +SS VMGT LA+M N P S T TPL +V VT S G D H A
Sbjct: 382 SSVTP*LWMRESSFVMGTTLAMMSNTPLSWTLTPLVTVVLVTVSPGATLDCHFA 221
Score = 35.9 bits (72), Expect(2) = 3e-067
Identities = 14/16 (87%), Positives = 14/16 (87%)
Frame = +1 / +3
Query: 436 VLSDRDLHINAHFIGK 483
V SD DLHINAHFIGK
Sbjct: 3 VRSDADLHINAHFIGK 50
Score = 31.3 bits (62), Expect(2) = 2e-032
Identities = 13/16 (81%), Positives = 13/16 (81%)
Frame = -3 / -1
Query: 482 LPMKCALMWRSRSEST 435
LPMK ALMWRS SE T
Sbjct: 49 LPMK*ALMWRSASERT 2
Score = 27.2 bits (53), Expect(2) = 4e-028
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = -3 / -1
Query: 587 HAAVFLAPT*SSWPSKSTAMAWIHVKSR 504
H VF AP * + AWI VKSR
Sbjct: 151 HLVVFWAPM*RR*SANRMPRAWIQVKSR 68
>gb|BF253765.2|BF253765 HVSMEf0002B02f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0002B02f, mRNA sequence
Length = 875
Score = 93.6 bits (198), Expect(4) = 3e-037
Identities = 34/41 (82%), Positives = 37/41 (90%)
Frame = +1 / +3
Query: 361 CGDPRFIGGDGNAFYFHGRRDADFCVLSDRDLHINAHFIGK 483
C DPRF+GGDGN F FHGRRDADFC+LSD +LHINAHFIGK
Sbjct: 372 CYDPRFVGGDGNKFLFHGRRDADFCLLSDANLHINAHFIGK 494
Score = 49.6 bits (102), Expect(4) = 3e-037
Identities = 16/30 (53%), Positives = 22/30 (73%)
Frame = +1 / +1
Query: 502 SRDFTWIQAIAVLFDGHELYVGARKTAAWD 591
+RDFTW+QA+ + F GH LYVG ++T D
Sbjct: 511 ARDFTWVQALGIRFGGHRLYVGVKRTVTLD 600
Score = 45.5 bits (93), Expect(4) = 3e-037
Identities = 25/65 (38%), Positives = 33/65 (50%)
Frame = +1 / +1
Query: 661 AWTSGAVPALSVTRTSAANGVLVSLDGRFTIRANAVPITEEESRVHRYGVTADDCLAHLD 840
A T P LSV R A +GV V + + V +T +S+ H +G+TAD L HL
Sbjct: 673 AGTQAFGPGLSVFRIGAGHGVGVRPQRTGSHGCHRVAVTRGDSKGHDFGLTADKRLGHLK 852
Query: 841 LAFKF 855
FKF
Sbjct: 853 GGFKF 867
Score = 23.1 bits (44), Expect(4) = 3e-037
Identities = 8/19 (42%), Positives = 8/19 (42%)
Frame = +1 / +3
Query: 253 PYCPGKPMECPAECSQSCY 309
P C CPA C CY
Sbjct: 261 PECMIPVRRCPAGCRDLCY 317
>gb|CA016489.1|CA016489 HV08K17u HV Hordeum vulgare subsp. vulgare cDNA clone HV08K17
3-PRIME, mRNA sequence
Length = 555
Score = 155 bits (332), Expect = 7e-037
Identities = 61/103 (59%), Positives = 77/103 (74%)
Frame = +1 / -1
Query: 721 VLVSLDGRFTIRANAVPITEEESRVHRYGVTADDCLAHLDLAFKFGALTADVHGVVGQTY 900
V V L+G F I AN VPITE++SR+H YGVT DD LAH D+ FKF LT DVHGV+GQTY
Sbjct: 555 VRVQLEGVFDILANVVPITEKDSRIHNYGVTEDDSLAHFDMGFKFHGLTDDVHGVLGQTY 376
Query: 901 RSDYVNRFDVKASMPTMGGDSNYTTSSLFAADCAVARYAPSGG 1029
R+DYVN+ V A+MP MGG ++Y +S +F+ DC VAR+ + G
Sbjct: 375 RTDYVNKLSVSANMPIMGGAASYVSSDIFSTDCKVARFGRAHG 247
>gb|CA016225.1|CA016225 HV09K18u HV Hordeum vulgare subsp. vulgare cDNA clone HV09K18
3-PRIME, mRNA sequence
Length = 553
Score = 154 bits (330), Expect = 1e-036
Identities = 60/101 (59%), Positives = 76/101 (75%)
Frame = +1 / -2
Query: 727 VSLDGRFTIRANAVPITEEESRVHRYGVTADDCLAHLDLAFKFGALTADVHGVVGQTYRS 906
V L+G F I AN VPITE++SR+H YGVT DD LAH D+ FKF LT DVHGV+GQTYR+
Sbjct: 549 VQLEGVFDILANVVPITEKDSRIHNYGVTEDDSLAHFDMGFKFHGLTDDVHGVLGQTYRT 370
Query: 907 DYVNRFDVKASMPTMGGDSNYTTSSLFAADCAVARYAPSGG 1029
DYVN+ V A+MP MGG ++Y +S +F+ DC VAR+ + G
Sbjct: 369 DYVNKLSVSANMPIMGGAASYVSSDIFSTDCKVARFGRAHG 247
>gb|CA018793.1|CA018793 HV09K18r HV Hordeum vulgare subsp. vulgare cDNA clone HV09K18
5-PRIME, mRNA sequence
Length = 647
Score = 91.3 bits (193), Expect(2) = 4e-036
Identities = 32/42 (76%), Positives = 36/42 (85%)
Frame = +1 / +3
Query: 358 ACGDPRFIGGDGNAFYFHGRRDADFCVLSDRDLHINAHFIGK 483
+CGDPRF G DGN FYFHG++D FCV+SD DLHINAHFIGK
Sbjct: 369 SCGDPRFTGADGNNFYFHGKKDQSFCVVSDTDLHINAHFIGK 494
Score = 81.3 bits (171), Expect(2) = 4e-036
Identities = 29/46 (63%), Positives = 35/46 (76%)
Frame = +1 / +3
Query: 499 MSRDFTWIQAIAVLFDGHELYVGARKTAAWDDDVDRMELTLDGEPV 636
MSRDFTWIQA+ + F H LY+GA+KT WD DVDR+EL DG P+
Sbjct: 507 MSRDFTWIQALGIRFADHRLYMGAQKTVGWDSDVDRLELAFDGMPI 644
>gb|BQ767003.1|BQ767003 EBro08_SQ007_P13_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ007_P13 5', mRNA sequence
Length = 460
Score = 136 bits (291), Expect = 3e-031
Identities = 55/90 (61%), Positives = 68/90 (75%)
Frame = +1 / +3
Query: 745 FTIRANAVPITEEESRVHRYGVTADDCLAHLDLAFKFGALTADVHGVVGQTYRSDYVNRF 924
F+I ANAVPIT+E+SR+H YG T D L HLDL FKF ALT V GV+GQTY SDY+++
Sbjct: 6 FSISANAVPITDEDSRIHNYGKTEKDSLVHLDLGFKFHALTNGVDGVLGQTYSSDYISKV 185
Query: 925 DVKASMPTMGGDSNYTTSSLFAADCAVARY 1014
+V A MP MGG Y ++SLF+ DCAVAR+
Sbjct: 186 NVTAKMPIMGGAPKYHSASLFSTDCAVARF 275
>gb|BF258050.2|BF258050 HVSMEf0014J23f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0014J23f, mRNA sequence
Length = 574
Score = 90.0 bits (190), Expect(2) = 2e-025
Identities = 32/42 (76%), Positives = 35/42 (83%)
Frame = +1 / +2
Query: 358 ACGDPRFIGGDGNAFYFHGRRDADFCVLSDRDLHINAHFIGK 483
+CGDPRF G DGN FYFHG +D FCV+SD DLHINAHFIGK
Sbjct: 347 SCGDPRFTGADGNNFYFHGMKDQSFCVVSDTDLHINAHFIGK 472
Score = 46.9 bits (96), Expect(2) = 2e-025
Identities = 17/27 (62%), Positives = 21/27 (77%)
Frame = +1 / +2
Query: 499 MSRDFTWIQAIAVLFDGHELYVGARKT 579
MSRDFTWIQA+ + H LY+GA+KT
Sbjct: 485 MSRDFTWIQALGIRLADHRLYMGAQKT 565
>gb|BM370277.2|BM370277 EBro08_SQ003_L08_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ003_L08 5', mRNA sequence
Length = 568
Score = 95.5 bits (202), Expect(2) = 2e-025
Identities = 32/43 (74%), Positives = 37/43 (86%)
Frame = +1 / +2
Query: 358 ACGDPRFIGGDGNAFYFHGRRDADFCVLSDRDLHINAHFIGKH 486
+CGDPRF GGDGN FYFHG++D DFC++SD LHINAHFIG H
Sbjct: 359 SCGDPRFTGGDGNTFYFHGKKDQDFCIVSDEALHINAHFIGNH 487
Score = 40.9 bits (83), Expect(2) = 2e-025
Identities = 16/24 (66%), Positives = 17/24 (70%)
Frame = +1 / +2
Query: 499 MSRDFTWIQAIAVLFDGHELYVGA 570
+ R FTWIQAI V F H LYVGA
Sbjct: 497 VKRSFTWIQAIGVSFGQHRLYVGA 568
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 516,944,339
Number of Sequences: 312970
Number of extensions: 9216871
Number of successful extensions: 265867
Number of sequences better than 1.0e-020: 12
length of database: 58,378,179
effective HSP length: 53
effective length of database: 41,790,769
effective search space used: 16089446065
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)