TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AB021175.2.1
(1225 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB882390.1|CB882390 HL01L20w HL Hordeum vulgare subsp. v... 125 3e-069
gb|CA018793.1|CA018793 HV09K18r HV Hordeum vulgare subsp. v... 249 2e-065
gb|BF258050.2|BF258050 HVSMEf0014J23f Hordeum vulgare seedl... 241 7e-063
gb|BF254580.2|BF254580 HVSMEf0004G18f Hordeum vulgare seedl... 125 6e-060
gb|BM370277.2|BM370277 EBro08_SQ003_L08_R root, 3 week, dro... 202 4e-051
gb|CA016489.1|CA016489 HV08K17u HV Hordeum vulgare subsp. v... 132 5e-041
gb|CA016225.1|CA016225 HV09K18u HV Hordeum vulgare subsp. v... 132 5e-041
gb|BF253765.2|BF253765 HVSMEf0002B02f Hordeum vulgare seedl... 88 2e-034
gb|BM370613.2|BM370613 EBro08_SQ004_L22_R root, 3 week, dro... 108 9e-033
gb|BQ767003.1|BQ767003 EBro08_SQ007_P13_R root, 3 week, dro... 115 2e-032
>gb|CB882390.1|CB882390 HL01L20w HL Hordeum vulgare subsp. vulgare cDNA clone HL01L20
3-PRIME, mRNA sequence
Length = 562
Score = 125 bits (267), Expect(3) = 3e-069
Identities = 48/61 (78%), Positives = 55/61 (90%)
Frame = +1 / +3
Query: 796 DGDTLAHLDLGFKFYDLTDDVHGVLGQTYRPDYVNSLNVTSNMPVMGGAPDYLSSDLFST 975
+ DTLAHLD+GFKFYDLTDDVHGVLGQTYR DYVN L+V++NMPVMGG Y+SSD+FST
Sbjct: 378 EDDTLAHLDIGFKFYDLTDDVHGVLGQTYRSDYVNKLSVSANMPVMGGVXSYISSDIFST 557
Query: 976 D 978
D
Sbjct: 558 D 560
Score = 103 bits (220), Expect(3) = 3e-069
Identities = 40/48 (83%), Positives = 43/48 (89%)
Frame = +1 / +3
Query: 409 SDAALHINAHFIGKRNPAMSRDFTWIQALGIRFAHHHLYVAAQRTPRW 552
SDA LHINAHFIGKRNPAMSRDFTWIQALGIRFA H LY+ AQ+T +W
Sbjct: 9 SDADLHINAHFIGKRNPAMSRDFTWIQALGIRFADHRLYMGAQKTTKW 152
Score = 97.7 bits (207), Expect(3) = 5e-046
Identities = 47/62 (75%), Positives = 49/62 (79%)
Frame = -3 / -1
Query: 980 QSVEKRSEER*SGAPPMTGMLDVTLRLLT*SGR*VWPSTPCTSSVRS*NLKPRSRCARVS 801
QSVEK SEE * PP+TGML +TL LLT*S R*VWP TP TSSVRS*NL P SRCARVS
Sbjct: 562 QSVEKMSEEM*LXTPPITGMLALTLSLLT*SER*VWPRTP*TSSVRS*NLNPMSRCARVS 383
Query: 800 PS 795
S
Sbjct: 382 SS 377
Score = 80.8 bits (170), Expect(3) = 5e-046
Identities = 36/48 (75%), Positives = 38/48 (79%)
Frame = -3 / -1
Query: 551 HLGVLWAAT*RWWCAKRMPSAWIQVKSRLMAGLRLPMKCALMWRAASE 408
HL V WA *R A RMP AWIQVKSRL+AGLRLPMK ALMWR+ASE
Sbjct: 151 HLVVFWAPM*RR*SANRMPRAWIQVKSRLIAGLRLPMK*ALMWRSASE 8
Score = 73.0 bits (153), Expect(3) = 3e-069
Identities = 29/57 (50%), Positives = 35/57 (61%)
Frame = +1 / +3
Query: 628 VGARWSPPTAPALSXXXXXXXXXXXXELRGAFRIVASVVPITAEDSRIHNYGVREDD 798
+GA+W AP L+ +L+G F I+A VVPIT EDSRIHNYGV EDD
Sbjct: 216 IGAKWQSSVAPGLTVTRTTVTNGVRVQLKGVFDIMAKVVPITKEDSRIHNYGVTEDD 386
Score = 49.2 bits (101), Expect(3) = 5e-046
Identities = 21/28 (75%), Positives = 23/28 (82%)
Frame = -3 / -1
Query: 797 SSSLTP*LWIRESSAVMGTTLATMRKAP 714
SSS+TP*LW+RESS VMGTTLA M P
Sbjct: 385 SSSVTP*LWMRESSFVMGTTLAMMSNTP 302
>gb|CA018793.1|CA018793 HV09K18r HV Hordeum vulgare subsp. vulgare cDNA clone HV09K18
5-PRIME, mRNA sequence
Length = 647
Score = 249 bits (539), Expect = 2e-065
Identities = 88/124 (70%), Positives = 102/124 (82%)
Frame = +1 / +3
Query: 181 RSTTLKCTNIKSNKTTCSATCNARCPHKCLIQCPSCKTFCLCDFYPGVSCGDPRFTGADG 360
R+ L C + K + C ATC+ RCP++C++ CP CKT+C+CDFYPGVSCGDPRFTGADG
Sbjct: 225 RNQVLSCDDTKDGNSPCVATCDKRCPNECIVMCPGCKTYCMCDFYPGVSCGDPRFTGADG 404
Query: 361 NNFYFHGKKDRDFCIVSDAALHINAHFIGKRNPAMSRDFTWIQALGIRFAHHHLYVAAQR 540
NNFYFHGKKD+ FC+VSD LHINAHFIGKRNP MSRDFTWIQALGIRFA H LY+ AQ+
Sbjct: 405 NNFYFHGKKDQSFCVVSDTDLHINAHFIGKRNPTMSRDFTWIQALGIRFADHRLYMGAQK 584
Query: 541 TPRW 552
T W
Sbjct: 585 TVGW 596
Score = 172 bits (371), Expect = 3e-042
Identities = 75/96 (78%), Positives = 76/96 (79%)
Frame = -3 / -2
Query: 551 HLGVLWAAT*RWWCAKRMPSAWIQVKSRLMAGLRLPMKCALMWRAASETMQKSRSFLPWK 372
H V WA *R W AKRMP AWIQVKSRLM GLRLPMK ALMWR+ SET QK SFLPWK
Sbjct: 595 HPTVFWAPM*RRWSAKRMPRAWIQVKSRLMVGLRLPMKWALMWRSVSETTQKLWSFLPWK 416
Query: 371 *KLLPSAPVKRGSPQDTPG*KSHKQNVLQLGHWMRH 264
*KLLPSAPVKRGSPQDTPG*KSH Q VLQ GH H
Sbjct: 415 *KLLPSAPVKRGSPQDTPG*KSHMQ*VLQPGHMTMH 308
>gb|BF258050.2|BF258050 HVSMEf0014J23f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0014J23f, mRNA sequence
Length = 574
Score = 241 bits (520), Expect = 7e-063
Identities = 85/121 (70%), Positives = 99/121 (81%)
Frame = +1 / +2
Query: 181 RSTTLKCTNIKSNKTTCSATCNARCPHKCLIQCPSCKTFCLCDFYPGVSCGDPRFTGADG 360
R+ L C + K + C ATC+ RCP++C++ CP CKT+C+CDFYPGVSCGDPRFTGADG
Sbjct: 203 RNQVLSCDDTKDGNSPCVATCDKRCPNECIVMCPGCKTYCMCDFYPGVSCGDPRFTGADG 382
Query: 361 NNFYFHGKKDRDFCIVSDAALHINAHFIGKRNPAMSRDFTWIQALGIRFAHHHLYVAAQR 540
NNFYFHG KD+ FC+VSD LHINAHFIGKRNP MSRDFTWIQALGIR A H LY+ AQ+
Sbjct: 383 NNFYFHGMKDQSFCVVSDTDLHINAHFIGKRNPTMSRDFTWIQALGIRLADHRLYMGAQK 562
Query: 541 T 543
T
Sbjct: 563 T 565
Score = 171 bits (369), Expect = 5e-042
Identities = 74/96 (77%), Positives = 76/96 (79%)
Frame = -3 / -2
Query: 551 HLGVLWAAT*RWWCAKRMPSAWIQVKSRLMAGLRLPMKCALMWRAASETMQKSRSFLPWK 372
H V WA *R W AKRMP AWIQVKSRLM GLRLPMK ALMWR+ SET QK SF+PWK
Sbjct: 573 HPTVFWAPM*RRWSAKRMPRAWIQVKSRLMVGLRLPMKWALMWRSVSETTQKLWSFMPWK 394
Query: 371 *KLLPSAPVKRGSPQDTPG*KSHKQNVLQLGHWMRH 264
*KLLPSAPVKRGSPQDTPG*KSH Q VLQ GH H
Sbjct: 393 *KLLPSAPVKRGSPQDTPG*KSHMQ*VLQPGHMTMH 286
>gb|BF254580.2|BF254580 HVSMEf0004G18f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0004G18f, mRNA sequence
Length = 852
Score = 125 bits (268), Expect(3) = 6e-060
Identities = 48/68 (70%), Positives = 57/68 (83%)
Frame = +1 / +3
Query: 796 DGDTLAHLDLGFKFYDLTDDVHGVLGQTYRPDYVNSLNVTSNMPVMGGAPDYLSSDLFST 975
+ D+LAHLD+GFKF DLTDDVHGVLGQTYR DYVN L+V++NMPVMGG Y+ D+F+
Sbjct: 333 EDDSLAHLDIGFKFDDLTDDVHGVLGQTYRSDYVNKLSVSANMPVMGGVSSYIXYDIFAI 512
Query: 976 DCAVARFG 999
DC VARFG
Sbjct: 513 DCKVARFG 536
Score = 84.5 bits (178), Expect(3) = 1e-033
Identities = 44/68 (64%), Positives = 48/68 (70%)
Frame = -3 / -3
Query: 998 PKRATAQSVEKRSEER*SGAPPMTGMLDVTLRLLT*SGR*VWPSTPCTSSVRS*NLKPRS 819
P AT QS+ K S * PP+TGML +TL LLT*S R*V P TP TSSVRS NLKP S
Sbjct: 535 PNLATLQSMAKMS*XM*LDTPPITGMLALTLSLLT*SER*V*PRTP*TSSVRSSNLKPMS 356
Query: 818 RCARVSPS 795
RCAR+S S
Sbjct: 355 RCARLSSS 332
Score = 74.4 bits (156), Expect(3) = 6e-060
Identities = 27/35 (77%), Positives = 30/35 (85%)
Frame = +1 / +3
Query: 448 KRNPAMSRDFTWIQALGIRFAHHHLYVAAQRTPRW 552
KRNP MSRDFTWIQALGIRFA H LY+ AQ+T +W
Sbjct: 3 KRNPTMSRDFTWIQALGIRFADHRLYIGAQKTTKW 107
Score = 70.7 bits (148), Expect(3) = 6e-060
Identities = 29/57 (50%), Positives = 35/57 (61%)
Frame = +1 / +3
Query: 628 VGARWSPPTAPALSXXXXXXXXXXXXELRGAFRIVASVVPITAEDSRIHNYGVREDD 798
VGA+W + PAL+ +L+G F I+A VVPIT EDSR HNYGV EDD
Sbjct: 171 VGAKWQSTSDPALTVTRTTVTNGVRVQLKGVFDIMAKVVPITEEDSRTHNYGVTEDD 341
Score = 52.8 bits (109), Expect(3) = 1e-033
Identities = 24/35 (68%), Positives = 25/35 (71%)
Frame = -3 / -3
Query: 551 HLGVLWAAT*RWWCAKRMPSAWIQVKSRLMAGLRL 447
HL V WA * AKRMP AWIQVKSRL+ GLRL
Sbjct: 106 HLVVFWAPM*SR*SAKRMPRAWIQVKSRLIVGLRL 2
Score = 49.6 bits (102), Expect(3) = 1e-033
Identities = 20/28 (71%), Positives = 24/28 (85%)
Frame = -3 / -3
Query: 797 SSSLTP*LWIRESSAVMGTTLATMRKAP 714
SSS+TP*LW+RESS+V+GTTLA M P
Sbjct: 340 SSSVTP*LWVRESSSVIGTTLAMMSNTP 257
>gb|BM370277.2|BM370277 EBro08_SQ003_L08_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ003_L08 5', mRNA sequence
Length = 568
Score = 202 bits (435), Expect = 4e-051
Identities = 74/125 (59%), Positives = 85/125 (68%)
Frame = +1 / +2
Query: 160 LKVGSNDRSTTLKCTNIKSNKTTCSATCNARCPHKCLIQCPSCKTFCLCDFYPGVSCGDP 339
+ + N T + KT C +C RCP+KCL C C +FC+CD PG SCGDP
Sbjct: 194 ITIPKNSIKRLFAVTCSERRKTPCVVSCPRRCPNKCLAYCKYCMSFCVCDLVPGTSCGDP 373
Query: 340 RFTGADGNNFYFHGKKDRDFCIVSDAALHINAHFIGKRNPAMSRDFTWIQALGIRFAHHH 519
RFTG DGN FYFHGKKD+DFCIVSD ALHINAHFIG NPA+ R FTWIQA+G+ F H
Sbjct: 374 RFTGGDGNTFYFHGKKDQDFCIVSDEALHINAHFIGNHNPAVKRSFTWIQAIGVSFGQHR 553
Query: 520 LYVAA 534
LYV A
Sbjct: 554 LYVGA 568
Score = 134 bits (287), Expect = 1e-030
Identities = 60/90 (66%), Positives = 65/90 (72%)
Frame = -3 / -2
Query: 533 AAT*RWWCAKRMPSAWIQVKSRLMAGLRLPMKCALMWRAASETMQKSRSFLPWK*KLLPS 354
A T*R C K P AWI VK R AGL LPMK ALMWRA+SETMQKS SFLPWK*K+LPS
Sbjct: 567 APT*RRCCPKLTPMAWIHVKLRFTAGLWLPMKWALMWRASSETMQKSWSFLPWK*KVLPS 388
Query: 353 APVKRGSPQDTPG*KSHKQNVLQLGHWMRH 264
PVKRGSP + PG +SH QN +Q RH
Sbjct: 387 PPVKRGSPHEVPGTRSHTQNDMQYLQ*ARH 298
>gb|CA016489.1|CA016489 HV08K17u HV Hordeum vulgare subsp. vulgare cDNA clone HV08K17
3-PRIME, mRNA sequence
Length = 555
Score = 132 bits (283), Expect(2) = 5e-041
Identities = 50/68 (73%), Positives = 60/68 (88%)
Frame = +1 / -1
Query: 796 DGDTLAHLDLGFKFYDLTDDVHGVLGQTYRPDYVNSLNVTSNMPVMGGAPDYLSSDLFST 975
+ D+LAH D+GFKF+ LTDDVHGVLGQTYR DYVN L+V++NMP+MGGA Y+SSD+FST
Sbjct: 462 EDDSLAHFDMGFKFHGLTDDVHGVLGQTYRTDYVNKLSVSANMPIMGGAASYVSSDIFST 283
Query: 976 DCAVARFG 999
DC VARFG
Sbjct: 282 DCKVARFG 259
Score = 100 bits (213), Expect(2) = 6e-029
Identities = 48/68 (70%), Positives = 51/68 (75%)
Frame = -3 / +2
Query: 998 PKRATAQSVEKRSEER*SGAPPMTGMLDVTLRLLT*SGR*VWPSTPCTSSVRS*NLKPRS 819
P AT QSVEK SEE * APPM GML +TL LLT*S R*VWPSTP TSSVR NL P S
Sbjct: 260 PNLATLQSVEKMSEET*LAAPPMMGMLALTLSLLT*SVR*VWPSTPWTSSVRPWNLNPMS 439
Query: 818 RCARVSPS 795
+CAR+S S
Sbjct: 440 KCARLSSS 463
Score = 56.1 bits (116), Expect(2) = 5e-041
Identities = 22/31 (70%), Positives = 26/31 (83%)
Frame = +1 / -1
Query: 706 ELRGAFRIVASVVPITAEDSRIHNYGVREDD 798
+L G F I+A+VVPIT +DSRIHNYGV EDD
Sbjct: 546 QLEGVFDILANVVPITEKDSRIHNYGVTEDD 454
Score = 47.8 bits (98), Expect(2) = 6e-029
Identities = 20/28 (71%), Positives = 23/28 (82%)
Frame = -3 / +2
Query: 797 SSSLTP*LWIRESSAVMGTTLATMRKAP 714
SSS+TP*LW+RES +VMGTTLA M P
Sbjct: 455 SSSVTP*LWMRESFSVMGTTLAKMSNTP 538
>gb|CA016225.1|CA016225 HV09K18u HV Hordeum vulgare subsp. vulgare cDNA clone HV09K18
3-PRIME, mRNA sequence
Length = 553
Score = 132 bits (283), Expect(2) = 5e-041
Identities = 50/68 (73%), Positives = 60/68 (88%)
Frame = +1 / -2
Query: 796 DGDTLAHLDLGFKFYDLTDDVHGVLGQTYRPDYVNSLNVTSNMPVMGGAPDYLSSDLFST 975
+ D+LAH D+GFKF+ LTDDVHGVLGQTYR DYVN L+V++NMP+MGGA Y+SSD+FST
Sbjct: 462 EDDSLAHFDMGFKFHGLTDDVHGVLGQTYRTDYVNKLSVSANMPIMGGAASYVSSDIFST 283
Query: 976 DCAVARFG 999
DC VARFG
Sbjct: 282 DCKVARFG 259
Score = 100 bits (213), Expect(2) = 6e-029
Identities = 48/68 (70%), Positives = 51/68 (75%)
Frame = -3 / +2
Query: 998 PKRATAQSVEKRSEER*SGAPPMTGMLDVTLRLLT*SGR*VWPSTPCTSSVRS*NLKPRS 819
P AT QSVEK SEE * APPM GML +TL LLT*S R*VWPSTP TSSVR NL P S
Sbjct: 260 PNLATLQSVEKMSEET*LAAPPMMGMLALTLSLLT*SVR*VWPSTPWTSSVRPWNLNPMS 439
Query: 818 RCARVSPS 795
+CAR+S S
Sbjct: 440 KCARLSSS 463
Score = 56.1 bits (116), Expect(2) = 5e-041
Identities = 22/31 (70%), Positives = 26/31 (83%)
Frame = +1 / -2
Query: 706 ELRGAFRIVASVVPITAEDSRIHNYGVREDD 798
+L G F I+A+VVPIT +DSRIHNYGV EDD
Sbjct: 546 QLEGVFDILANVVPITEKDSRIHNYGVTEDD 454
Score = 47.8 bits (98), Expect(2) = 6e-029
Identities = 20/28 (71%), Positives = 23/28 (82%)
Frame = -3 / +2
Query: 797 SSSLTP*LWIRESSAVMGTTLATMRKAP 714
SSS+TP*LW+RES +VMGTTLA M P
Sbjct: 455 SSSVTP*LWMRESFSVMGTTLAKMSNTP 538
>gb|BF253765.2|BF253765 HVSMEf0002B02f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0002B02f, mRNA sequence
Length = 875
Score = 88.1 bits (186), Expect(3) = 2e-034
Identities = 32/48 (66%), Positives = 36/48 (75%)
Frame = +1 / +3
Query: 319 GVSCGDPRFTGADGNNFYFHGKKDRDFCIVSDAALHINAHFIGKRNPA 462
G C DPRF G DGN F FHG++D DFC++SDA LHINAHFIGK A
Sbjct: 363 GTECYDPRFVGGDGNKFLFHGRRDADFCLLSDANLHINAHFIGKAQRA 506
Score = 57.9 bits (120), Expect(3) = 2e-034
Identities = 22/33 (66%), Positives = 25/33 (75%)
Frame = +1 / +1
Query: 445 GKRNPAMSRDFTWIQALGIRFAHHHLYVAAQRT 543
GKRN +RDFTW+QALGIRF H LYV +RT
Sbjct: 490 GKRNVHAARDFTWVQALGIRFGGHRLYVGVKRT 588
Score = 38.6 bits (78), Expect(3) = 2e-034
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1 / +3
Query: 241 CNARCPHKCLIQCPSCKTFCLCD 309
C A C C + CPSCK C+C+
Sbjct: 288 CPAGCRDLCYVHCPSCKLVCMCE 356
>gb|BM370613.2|BM370613 EBro08_SQ004_L22_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ004_L22 5', mRNA sequence
Length = 538
Score = 108 bits (230), Expect(2) = 9e-033
Identities = 43/77 (55%), Positives = 54/77 (70%)
Frame = +1 / +1
Query: 796 DGDTLAHLDLGFKFYDLTDDVHGVLGQTYRPDYVNSLNVTSNMPVMGGAPDYLSSDLFST 975
D D LAHL+L FKF LTDDVHGV+GQTYR DYVN +V ++MP MGG + +S +F+
Sbjct: 163 DDDCLAHLELAFKFNALTDDVHGVVGQTYRSDYVNHFDVRASMPTMGGDATFTTSSIFAA 342
Query: 976 DCAVARFGGRRHQQATA 1026
DC+VAR+G R A
Sbjct: 343 DCSVARYGVSRGNDGAA 393
Score = 52.8 bits (109), Expect(2) = 9e-033
Identities = 22/56 (39%), Positives = 29/56 (51%)
Frame = +1 / +1
Query: 631 GARWSPPTAPALSXXXXXXXXXXXXELRGAFRIVASVVPITAEDSRIHNYGVREDD 798
GA+W+ P LS + F I A+ VPIT E+SR+H YGV +DD
Sbjct: 4 GAKWTSSRVPELSVTRTKAANGVLVAVDRKFSIRANAVPITEEESRVHRYGVTDDD 171
>gb|BQ767003.1|BQ767003 EBro08_SQ007_P13_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ007_P13 5', mRNA sequence
Length = 460
Score = 115 bits (245), Expect(2) = 2e-032
Identities = 45/65 (69%), Positives = 54/65 (83%)
Frame = +1 / +3
Query: 802 DTLAHLDLGFKFYDLTDDVHGVLGQTYRPDYVNSLNVTSNMPVMGGAPDYLSSDLFSTDC 981
D+L HLDLGFKF+ LT+ V GVLGQTY DY++ +NVT+ MP+MGGAP Y S+ LFSTDC
Sbjct: 81 DSLVHLDLGFKFHALTNGVDGVLGQTYSSDYISKVNVTAKMPIMGGAPKYHSASLFSTDC 260
Query: 982 AVARF 996
AVARF
Sbjct: 261 AVARF 275
Score = 88.6 bits (187), Expect(2) = 1e-023
Identities = 43/63 (68%), Positives = 46/63 (73%)
Frame = -3 / -1
Query: 989 ATAQSVEKRSEER*SGAPPMTGMLDVTLRLLT*SGR*VWPSTPCTSSVRS*NLKPRSRCA 810
ATAQSVEKR E GAPPM G+L VTL LL *S *VWPSTP T VR+ NL PRSRC
Sbjct: 268 ATAQSVEKRLAEWYLGAPPMIGILAVTLTLLM*SEL*VWPSTPSTPLVRAWNLNPRSRCT 89
Query: 809 RVS 801
R+S
Sbjct: 88 RLS 80
Score = 45.1 bits (92), Expect(2) = 2e-032
Identities = 19/27 (70%), Positives = 20/27 (74%)
Frame = +1 / +3
Query: 718 AFRIVASVVPITAEDSRIHNYGVREDD 798
AF I A+ VPIT EDSRIHNYG E D
Sbjct: 3 AFSISANAVPITDEDSRIHNYGKTEKD 83
Score = 41.8 bits (85), Expect(2) = 1e-023
Identities = 19/27 (70%), Positives = 21/27 (77%)
Frame = -3 / -1
Query: 797 SSSLTP*LWIRESSAVMGTTLATMRKA 717
S S+ P*LWIRESS+VMGT LA M A
Sbjct: 82 SFSVFP*LWIRESSSVMGTALAEMLNA 2
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 346,609,447
Number of Sequences: 312970
Number of extensions: 4307189
Number of successful extensions: 35673
Number of sequences better than 1.0e-020: 12
length of database: 58,378,179
effective HSP length: 53
effective length of database: 41,790,769
effective search space used: 14793932226
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)