TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8612115.2.1
(1078 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI952990.1|BI952990 HVSMEm0008P06f Hordeum vulgare green... 100 3e-083
gb|BF262553.2|BF262553 HV_CEa0004F01f Hordeum vulgare seedl... 100 1e-082
gb|BQ762605.1|BQ762605 EBro02_SQ004_N09 _R root, 3 week, hy... 100 6e-072
gb|BM371207.2|BM371207 EBro04_SQ003_N15_R root, 3 week, sal... 111 8e-072
gb|CB879431.1|CB879431 HP02D14w HP Hordeum vulgare subsp. v... 199 2e-070
gb|BQ762734.1|BQ762734 EBro02_SQ004_L21_R root, 3 week, hyd... 100 3e-066
gb|BQ764132.1|BQ764132 EBro03_SQ006_I12_R root, 3 week, wat... 100 3e-059
gb|CB877860.1|CB877860 HP06H01T HP Hordeum vulgare subsp. v... 100 1e-058
gb|CB878248.1|CB878248 HP07N14T HP Hordeum vulgare subsp. v... 100 6e-058
gb|BF267787.2|BF267787 HV_CEa0018O07f Hordeum vulgare seedl... 98 1e-050
gb|BI952762.1|BI952762 HVSMEm0007K18f Hordeum vulgare green... 94 1e-046
gb|BQ768001.1|BQ768001 EBro08_SQ010_M09_R root, 3 week, dro... 100 2e-045
gb|CB876733.1|CB876733 HP02D14T HP Hordeum vulgare subsp. v... 100 6e-040
gb|BF631287.2|BF631287 HVSMEb0015I04f Hordeum vulgare seedl... 129 3e-034
gb|BG369379.2|BG369379 HVSMEi0024C18f Hordeum vulgare 20 DA... 55 2e-028
gb|BG368670.1|BG368670 HVSMEi0020C19f Hordeum vulgare 20 DA... 55 1e-027
gb|CB877554.1|CB877554 HP05F18T HP Hordeum vulgare subsp. v... 53 8e-026
gb|BM443361.2|BM443361 EBro02_SQ003_M08_R root, 3 week, hyd... 87 1e-025
gb|AL505584.1|AL505584 AL505584 Hordeum vulgare Barke roots... 55 8e-023
gb|AL450587.1|AL450587 AL450587 Hordeum vulgare Barke etiol... 76 9e-023
gb|AL504101.1|AL504101 AL504101 Hordeum vulgare Barke roots... 55 4e-022
>gb|BI952990.1|BI952990 HVSMEm0008P06f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0008P06f, mRNA sequence
Length = 787
Score = 99.6 bits (211), Expect(6) = 3e-083
Identities = 40/52 (76%), Positives = 44/52 (84%)
Frame = +2 / +2
Query: 191 SGGCTGVGADVKACQRMGVKVLLSIGGGVGSYGLSSRADARSVAAYLWDNYL 346
SG CT VGADVK+CQ G+KVLLSIGGGVGSYGLSS DA+ VA YLW+NYL
Sbjct: 260 SGSCTFVGADVKSCQSRGIKVLLSIGGGVGSYGLSSADDAKEVAKYLWENYL 415
Score = 85.4 bits (180), Expect(7) = 5e-061
Identities = 37/52 (71%), Positives = 39/52 (75%)
Frame = -2 / -2
Query: 345 R*LSQRYAATLRASARDESP*LPTPPPMESRTLTPMRWHALTSAPTPVHPPL 190
R* SQRY AT AS+ +E P*LPTPPPMESRTL P W LTSAPT VH PL
Sbjct: 414 R*FSQRYLATSLASSAEERP*LPTPPPMESRTLMPRLWQDLTSAPTKVHDPL 259
Score = 83.1 bits (175), Expect(6) = 3e-083
Identities = 34/57 (59%), Positives = 38/57 (66%)
Frame = +2 / +2
Query: 557 LGTALATGLFDYVWVQFYNNPPCQYSASAGVGSLAKAWAQWTSIRAGRVFLGLPAAP 727
LG AL TGL YVWVQFYNNPPCQY+ + G G+LA + I A VFLGLP P
Sbjct: 614 LGGALGTGLVHYVWVQFYNNPPCQYNKAGGAGNLASPGRKGAWIPARAVFLGLPGGP 784
Score = 82.2 bits (173), Expect(6) = 3e-083
Identities = 31/49 (63%), Positives = 36/49 (73%)
Frame = +2 / +2
Query: 53 GPERQRGXVXQTCATGNYRFVNVAFLPTFGKGQTPALNLAGHCDPASGG 199
G G + CATG+Y+FVNVAFL TFG+GQ P LNLAGHCDPA+ G
Sbjct: 119 GQNGNEGTLAXACATGDYKFVNVAFLFTFGRGQKPLLNLAGHCDPATSG 265
Score = 67.5 bits (141), Expect(6) = 3e-083
Identities = 27/32 (84%), Positives = 28/32 (87%)
Frame = +3 / +2
Query: 390 LGDAVLDGVDFDIESGGGMYWDDLARFLKSYS 485
LGDAVLDGVDFDIESGG +WDDLAR LK YS
Sbjct: 440 LGDAVLDGVDFDIESGGSAHWDDLARELKKYS 535
Score = 64.8 bits (135), Expect(7) = 5e-061
Identities = 28/43 (65%), Positives = 31/43 (72%)
Frame = -2 / -2
Query: 198 PPLAGSQWPARLSAGVCPLPNVGRKATLTNL*XPVAQVCXTSP 70
P +AGSQWPAR S+G PLP V RKATLTNL* PVA + P
Sbjct: 264 PLVAGSQWPARFSSGFWPLPKVKRKATLTNL*SPVAHA*ASVP 136
Score = 62.9 bits (131), Expect(7) = 5e-061
Identities = 26/45 (57%), Positives = 27/45 (60%)
Frame = -2 / -2
Query: 726 GAAGRPRNTRPALMDVHCAHAFARLPTPALALYWHGGLL*NCTHT 592
G G PRNT A + ARLP P LYWHGGLL*NCTHT
Sbjct: 783 GPPGSPRNTARAGIHAPLRPGLARLPAPPALLYWHGGLL*NCTHT 649
Score = 60.2 bits (125), Expect(5) = 8e-027
Identities = 24/31 (77%), Positives = 24/31 (77%)
Frame = -3 / -3
Query: 656 GCPRRRSRCTGTAGCCRTAPTRSRTAPWRAR 564
GCP R CTGTAGCCRTAPTRS AP RAR
Sbjct: 713 GCPPPRLCCTGTAGCCRTAPTRSGPAPSRAR 621
Score = 57.9 bits (120), Expect(5) = 2e-023
Identities = 26/36 (72%), Positives = 28/36 (77%)
Frame = +1 / +1
Query: 556 AGHRARHGAVRLRVGAVLQQPAVPVQRERRRGQPGE 663
A RAR GA LRVGAVLQQPAVPVQ+ R GQPG+
Sbjct: 613 ARRRARDGAGPLRVGAVLQQPAVPVQQSRGGGQPGQ 720
Score = 48.7 bits (100), Expect(5) = 8e-027
Identities = 24/33 (72%), Positives = 24/33 (72%)
Frame = -1 / -1
Query: 319 DAPGVGPGREPVAADAPADGEQDLDAHALARLD 221
D GV G E VAADA ADGEQDLDA ALA LD
Sbjct: 388 DLLGVVGGGEAVAADAAADGEQDLDAAALAGLD 290
Score = 45.5 bits (93), Expect(7) = 5e-061
Identities = 21/27 (77%), Positives = 22/27 (81%)
Frame = -1 / -2
Query: 475 LRNRARSSQYMPPPLSMSKSTPSRTAS 395
L +RARSSQ PPLSMSKSTPS TAS
Sbjct: 525 LSSRARSSQCALPPLSMSKSTPSSTAS 445
Score = 38.6 bits (78), Expect(5) = 2e-023
Identities = 17/35 (48%), Positives = 20/35 (57%)
Frame = +1 / +1
Query: 88 LRHGXLQVRQRGLPPHVRQXXXXXXXXXXXLRPSE 192
+R G LQVRQRGLP H+RQ LRP +
Sbjct: 154 VRDGGLQVRQRGLPLHLRQGPEAAAEPGRPLRPGD 258
Score = 35.9 bits (72), Expect(6) = 3e-083
Identities = 13/18 (72%), Positives = 14/18 (77%)
Frame = +2 / +2
Query: 509 PCTCSAAPQCPFPDASLG 562
P +AAPQCPFPDA LG
Sbjct: 557 PVYLAAAPQCPFPDAMLG 610
Score = 35.0 bits (70), Expect(6) = 3e-083
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +3 / +2
Query: 39 IAIYWGQNGNEG 74
IAIYWGQNGNEG
Sbjct: 104 IAIYWGQNGNEG 139
Score = 34.1 bits (68), Expect(5) = 8e-027
Identities = 14/19 (73%), Positives = 14/19 (73%)
Frame = -3 / -3
Query: 146 PCRTWGGRPR*RTCSXPWR 90
PCR GRPR*RTCS P R
Sbjct: 212 PCRR*RGRPR*RTCSPPSR 156
Score = 34.1 bits (68), Expect(5) = 2e-023
Identities = 14/19 (73%), Positives = 14/19 (73%)
Frame = +1 / +1
Query: 232 PAHGRQGPALHRRGRRQLR 288
P QGPALHRR RRQLR
Sbjct: 301 PEPRHQGPALHRRRRRQLR 357
Score = 31.8 bits (63), Expect(7) = 5e-061
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = -2 / -3
Query: 72 PRCRSGPSRWRC 37
PRCRSGPSR RC
Sbjct: 137 PRCRSGPSRSRC 102
Score = 31.3 bits (62), Expect(5) = 8e-027
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = -1 / -2
Query: 73 PSLPFWPQ*MAM 38
PSLPFWPQ*+AM
Sbjct: 138 PSLPFWPQ*IAM 103
Score = 29.9 bits (59), Expect(5) = 2e-023
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = +2 / +1
Query: 38 HRHLLGPERQRG 73
HR LLGPERQRG
Sbjct: 103 HRDLLGPERQRG 138
Score = 27.6 bits (54), Expect(7) = 5e-061
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -1 / -1
Query: 607 ELHPHVVEQP 578
ELHPHVV+QP
Sbjct: 664 ELHPHVVDQP 635
Score = 26.7 bits (52), Expect(7) = 5e-061
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -2 / -2
Query: 546 GNGHCGAAEQVHG 508
GNGHCGAA + G
Sbjct: 594 GNGHCGAAARYTG 556
Score = 25.8 bits (50), Expect(5) = 2e-023
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = +1 / +1
Query: 526 CAAVPVPGRVA 558
CAAVP+PGR A
Sbjct: 574 CAAVPIPGRDA 606
Score = 24.0 bits (46), Expect(5) = 8e-027
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = -3 / -3
Query: 557 ATRPGTGTAAQ 525
A+RPG GTAAQ
Sbjct: 605 ASRPGMGTAAQ 573
>gb|BF262553.2|BF262553 HV_CEa0004F01f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0004F01f, mRNA sequence
Length = 843
Score = 99.6 bits (211), Expect(6) = 1e-082
Identities = 40/52 (76%), Positives = 44/52 (84%)
Frame = +2 / +1
Query: 191 SGGCTGVGADVKACQRMGVKVLLSIGGGVGSYGLSSRADARSVAAYLWDNYL 346
SG CT VGADVK+CQ G+KVLLSIGGGVGSYGLSS DA+ VA YLW+NYL
Sbjct: 253 SGSCTFVGADVKSCQSRGIKVLLSIGGGVGSYGLSSADDAKEVAKYLWENYL 408
Score = 87.2 bits (184), Expect(6) = 1e-082
Identities = 33/49 (67%), Positives = 37/49 (75%)
Frame = +2 / +1
Query: 53 GPERQRGXVXQTCATGNYRFVNVAFLPTFGKGQTPALNLAGHCDPASGG 199
G G + Q CATGNY+FVNVAFL TFG+GQ P LNLAGHCDPA+ G
Sbjct: 112 GQNGNEGTLAQACATGNYKFVNVAFLFTFGRGQKPLLNLAGHCDPATSG 258
Score = 85.4 bits (180), Expect(7) = 6e-058
Identities = 37/52 (71%), Positives = 39/52 (75%)
Frame = -2 / -2
Query: 345 R*LSQRYAATLRASARDESP*LPTPPPMESRTLTPMRWHALTSAPTPVHPPL 190
R* SQRY AT AS+ +E P*LPTPPPMESRTL P W LTSAPT VH PL
Sbjct: 407 R*FSQRYLATSLASSAEERP*LPTPPPMESRTLMPRLWQDLTSAPTKVHDPL 252
Score = 75.8 bits (159), Expect(6) = 1e-082
Identities = 32/64 (50%), Positives = 37/64 (57%)
Frame = +2 / +1
Query: 557 LGTALATGLFDYVWVQFYNNPPCQYSASAGVGSLAKAWAQWTSIRAGRVFLGLPAAPQAA 736
LG AL TGL DYVWVQFYNNP C Y+ + G+ A A +W A R G PA P
Sbjct: 607 LGGALRTGLLDYVWVQFYNNPACHYTKAG*AGNPASALQKWALNPASRGVPGAPAGPAVI 786
Query: 737 GSGF 748
G+ F
Sbjct: 787 GNRF 798
Score = 67.5 bits (141), Expect(6) = 1e-082
Identities = 27/32 (84%), Positives = 28/32 (87%)
Frame = +3 / +1
Query: 390 LGDAVLDGVDFDIESGGGMYWDDLARFLKSYS 485
LGDAVLDGVDFDIESGG +WDDLAR LK YS
Sbjct: 433 LGDAVLDGVDFDIESGGSAHWDDLARELKKYS 528
Score = 64.3 bits (134), Expect(7) = 6e-058
Identities = 28/43 (65%), Positives = 31/43 (72%)
Frame = -2 / -2
Query: 198 PPLAGSQWPARLSAGVCPLPNVGRKATLTNL*XPVAQVCXTSP 70
P +AGSQWPAR S+G PLP V RKATLTNL* PVA + P
Sbjct: 257 PLVAGSQWPARFSSGFWPLPKVKRKATLTNL*FPVAHA*ASVP 129
Score = 56.5 bits (117), Expect(7) = 6e-058
Identities = 25/52 (48%), Positives = 28/52 (53%)
Frame = -2 / -2
Query: 747 NPLPAAWGAAGRPRNTRPALMDVHCAHAFARLPTPALALYWHGGLL*NCTHT 592
N LP G AG P R A + H +A A LP + WH GLL*NCTHT
Sbjct: 797 NLLPMTAGPAGAPGTPRDAGFNAHFCNALAGLPAQPALV*WHAGLL*NCTHT 642
Score = 54.2 bits (112), Expect(5) = 1e-024
Identities = 22/36 (61%), Positives = 24/36 (66%)
Frame = -3 / -3
Query: 656 GCPRRRSRCTGTAGCCRTAPTRSRTAPWRARCPATR 549
GC R C GT GCC+TAPTRS TAP+ AR A R
Sbjct: 706 GCQLSRPWCNGTPGCCKTAPTRSPTAPYGARRRAHR 599
Score = 53.3 bits (110), Expect(6) = 6e-024
Identities = 25/45 (55%), Positives = 30/45 (66%)
Frame = +1 / +3
Query: 550 RVAGHRARHGAVRLRVGAVLQQPAVPVQRERRRGQPGESVGAVDV 684
R A RA +GAV LRVGAVLQQP VP+ + R QPG+ V + V
Sbjct: 600 RWARRRAPYGAVGLRVGAVLQQPGVPLHQGRLSWQPGQRVAEMGV 734
Score = 48.7 bits (100), Expect(5) = 1e-024
Identities = 24/33 (72%), Positives = 24/33 (72%)
Frame = -1 / -1
Query: 319 DAPGVGPGREPVAADAPADGEQDLDAHALARLD 221
D GV G E VAADA ADGEQDLDA ALA LD
Sbjct: 381 DLLGVVGGGEAVAADAAADGEQDLDAAALAGLD 283
Score = 44.1 bits (90), Expect(7) = 6e-058
Identities = 20/25 (80%), Positives = 21/25 (84%)
Frame = -1 / -2
Query: 469 NRARSSQYMPPPLSMSKSTPSRTAS 395
+RARSSQ PPLSMSKSTPS TAS
Sbjct: 512 SRARSSQCALPPLSMSKSTPSSTAS 438
Score = 38.6 bits (78), Expect(6) = 6e-024
Identities = 17/35 (48%), Positives = 20/35 (57%)
Frame = +1 / +3
Query: 88 LRHGXLQVRQRGLPPHVRQXXXXXXXXXXXLRPSE 192
+R G LQVRQRGLP H+RQ LRP +
Sbjct: 147 VRDGELQVRQRGLPLHLRQGPEAAAEPGRPLRPGD 251
Score = 35.9 bits (72), Expect(6) = 1e-082
Identities = 13/18 (72%), Positives = 14/18 (77%)
Frame = +2 / +1
Query: 509 PCTCSAAPQCPFPDASLG 562
P +AAPQCPFPDA LG
Sbjct: 550 PVYLAAAPQCPFPDAMLG 603
Score = 35.0 bits (70), Expect(5) = 1e-024
Identities = 14/19 (73%), Positives = 14/19 (73%)
Frame = -3 / -3
Query: 146 PCRTWGGRPR*RTCSXPWR 90
PCR GRPR*RTCS P R
Sbjct: 205 PCRR*RGRPR*RTCSSPSR 149
Score = 35.0 bits (70), Expect(6) = 1e-082
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +3 / +1
Query: 39 IAIYWGQNGNEG 74
IAIYWGQNGNEG
Sbjct: 97 IAIYWGQNGNEG 132
Score = 34.1 bits (68), Expect(6) = 6e-024
Identities = 14/19 (73%), Positives = 14/19 (73%)
Frame = +1 / +3
Query: 232 PAHGRQGPALHRRGRRQLR 288
P QGPALHRR RRQLR
Sbjct: 294 PEPRHQGPALHRRRRRQLR 350
Score = 31.3 bits (62), Expect(7) = 6e-058
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = -1 / -2
Query: 73 PSLPFWPQ*MAM 38
PSLPFWPQ*+AM
Sbjct: 131 PSLPFWPQ*IAM 96
Score = 28.6 bits (56), Expect(5) = 1e-024
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = -2 / -3
Query: 72 PRCRSGPSRWRC 37
PRCRSGPSR C
Sbjct: 130 PRCRSGPSRSLC 95
Score = 27.2 bits (53), Expect(6) = 6e-024
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = +2 / +3
Query: 38 HRHLLGPERQRG 73
H LLGPERQRG
Sbjct: 96 HSDLLGPERQRG 131
Score = 26.7 bits (52), Expect(7) = 6e-058
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -2 / -2
Query: 546 GNGHCGAAEQVHG 508
GNGHCGAA + G
Sbjct: 587 GNGHCGAAARYTG 549
Score = 25.8 bits (50), Expect(6) = 6e-024
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2 / +2
Query: 686 IRAGRVFLGLPAAPQAAGSGFVPASDLVAQVLP 784
IR FLG P P+++ GF+ + V Q LP
Sbjct: 737 IRRREGFLGHPRGPRSSVIGFLEPNPPVDQGLP 835
Score = 25.8 bits (50), Expect(6) = 6e-024
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = +1 / +3
Query: 526 CAAVPVPGRVA 558
CAAVP+PGR A
Sbjct: 567 CAAVPIPGRDA 599
Score = 25.8 bits (50), Expect(7) = 6e-058
Identities = 8/10 (80%), Positives = 10/10 (100%)
Frame = -1 / -1
Query: 607 ELHPHVVEQP 578
+LHPHVV+QP
Sbjct: 657 KLHPHVVQQP 628
Score = 24.9 bits (48), Expect(5) = 1e-024
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -3 / -3
Query: 557 ATRPGTGTAAQRNRYTGLRARPRRGVGL 474
A+RPG GTAAQ R P L
Sbjct: 598 ASRPGMGTAAQPPGTPACRRSPSASTSL 515
>gb|BQ762605.1|BQ762605 EBro02_SQ004_N09 _R root, 3 week, hydroponic grown, low nitrogen,
cv Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA
clone EBro02_SQ004_N09 5', mRNA sequence
Length = 670
Score = 99.6 bits (211), Expect(6) = 6e-072
Identities = 40/52 (76%), Positives = 44/52 (84%)
Frame = +2 / +2
Query: 191 SGGCTGVGADVKACQRMGVKVLLSIGGGVGSYGLSSRADARSVAAYLWDNYL 346
SG CT VGADVK+CQ G+KVLLSIGGGVGSYGLSS DA+ VA YLW+NYL
Sbjct: 266 SGSCTFVGADVKSCQSRGIKVLLSIGGGVGSYGLSSADDAKEVAKYLWENYL 421
Score = 87.2 bits (184), Expect(6) = 6e-072
Identities = 33/49 (67%), Positives = 37/49 (75%)
Frame = +2 / +2
Query: 53 GPERQRGXVXQTCATGNYRFVNVAFLPTFGKGQTPALNLAGHCDPASGG 199
G G + Q CATGNY+FVNVAFL TFG+GQ P LNLAGHCDPA+ G
Sbjct: 125 GQNGNEGTLAQACATGNYKFVNVAFLFTFGRGQKPLLNLAGHCDPATSG 271
Score = 85.4 bits (180), Expect(6) = 5e-048
Identities = 37/52 (71%), Positives = 39/52 (75%)
Frame = -2 / -2
Query: 345 R*LSQRYAATLRASARDESP*LPTPPPMESRTLTPMRWHALTSAPTPVHPPL 190
R* SQRY AT AS+ +E P*LPTPPPMESRTL P W LTSAPT VH PL
Sbjct: 420 R*FSQRYLATSLASSAEERP*LPTPPPMESRTLMPRLWQDLTSAPTKVHDPL 265
Score = 67.5 bits (141), Expect(6) = 6e-072
Identities = 27/32 (84%), Positives = 28/32 (87%)
Frame = +3 / +2
Query: 390 LGDAVLDGVDFDIESGGGMYWDDLARFLKSYS 485
LGDAVLDGVDFDIESGG +WDDLAR LK YS
Sbjct: 446 LGDAVLDGVDFDIESGGSAHWDDLARELKKYS 541
Score = 64.3 bits (134), Expect(6) = 5e-048
Identities = 28/43 (65%), Positives = 31/43 (72%)
Frame = -2 / -2
Query: 198 PPLAGSQWPARLSAGVCPLPNVGRKATLTNL*XPVAQVCXTSP 70
P +AGSQWPAR S+G PLP V RKATLTNL* PVA + P
Sbjct: 270 PLVAGSQWPARFSSGFWPLPKVKRKATLTNL*FPVAHA*ASVP 142
Score = 45.5 bits (93), Expect(6) = 5e-048
Identities = 21/27 (77%), Positives = 22/27 (81%)
Frame = -1 / -2
Query: 475 LRNRARSSQYMPPPLSMSKSTPSRTAS 395
L +RARSSQ PPLSMSKSTPS TAS
Sbjct: 531 LSSRARSSQCALPPLSMSKSTPSSTAS 451
Score = 38.6 bits (78), Expect(6) = 6e-072
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = +2 / +2
Query: 488 GAGARGGPCTCSAAPQCPFPDASLG 562
G G+ P +AAPQCPFPDA LG
Sbjct: 542 GKGSAYKPVYLAAAPQCPFPDAMLG 616
Score = 36.8 bits (74), Expect(6) = 6e-072
Identities = 14/17 (82%), Positives = 14/17 (82%)
Frame = +2 / +2
Query: 557 LGTALATGLFDYVWVQF 607
LG AL TGL DYVWVQF
Sbjct: 620 LGGALGTGLLDYVWVQF 670
Score = 35.0 bits (70), Expect(6) = 6e-072
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +3 / +2
Query: 39 IAIYWGQNGNEG 74
IAIYWGQNGNEG
Sbjct: 110 IAIYWGQNGNEG 145
Score = 31.8 bits (63), Expect(6) = 5e-048
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = -2 / -3
Query: 72 PRCRSGPSRWRC 37
PRCRSGPSR RC
Sbjct: 143 PRCRSGPSRSRC 108
Score = 29.0 bits (57), Expect(6) = 5e-048
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = -1 / -1
Query: 607 ELHPHVVEQP 578
ELHPHVVEQP
Sbjct: 670 ELHPHVVEQP 641
Score = 26.7 bits (52), Expect(6) = 5e-048
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = -3 / -3
Query: 557 ATRPGTGTAAQ 525
A+RPGTGTAAQ
Sbjct: 611 ASRPGTGTAAQ 579
>gb|BM371207.2|BM371207 EBro04_SQ003_N15_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ003_N15 5', mRNA sequence
Length = 579
Score = 111 bits (237), Expect(5) = 8e-072
Identities = 42/57 (73%), Positives = 47/57 (82%)
Frame = +2 / +1
Query: 557 LGTALATGLFDYVWVQFYNNPPCQYSASAGVGSLAKAWAQWTSIRAGRVFLGLPAAP 727
LG AL TGLFDYVWVQFYNNPPCQY+ + G G+LA AW +W SI A +VFLGLPAAP
Sbjct: 409 LGGALGTGLFDYVWVQFYNNPPCQYTKAGGAGNLASAWQKWASIPARQVFLGLPAAP 579
Score = 93.6 bits (198), Expect(5) = 8e-072
Identities = 38/52 (73%), Positives = 42/52 (80%)
Frame = +2 / +1
Query: 191 SGGCTGVGADVKACQRMGVKVLLSIGGGVGSYGLSSRADARSVAAYLWDNYL 346
SG CT VGADVK+CQ G+KVLLSIGGG SYGLSS DA+ VA YLW+NYL
Sbjct: 55 SGSCTFVGADVKSCQSRGIKVLLSIGGGACSYGLSSADDAKEVAKYLWENYL 210
Score = 79.4 bits (167), Expect(6) = 2e-050
Identities = 35/52 (67%), Positives = 37/52 (71%)
Frame = -2 / -2
Query: 345 R*LSQRYAATLRASARDESP*LPTPPPMESRTLTPMRWHALTSAPTPVHPPL 190
R* SQRY AT AS+ +E P*L PPPMESRTL P W LTSAPT VH PL
Sbjct: 209 R*FSQRYLATSLASSAEERP*LQAPPPMESRTLMPRLWQDLTSAPTKVHDPL 54
Score = 79.4 bits (167), Expect(6) = 2e-050
Identities = 31/45 (68%), Positives = 33/45 (73%)
Frame = -2 / -2
Query: 726 GAAGRPRNTRPALMDVHCAHAFARLPTPALALYWHGGLL*NCTHT 592
GAAG PRNT A +D H HA ARLP P +YWHGGLL*NCTHT
Sbjct: 578 GAAGSPRNTCRAGIDAHFCHALARLPAPPALVYWHGGLL*NCTHT 444
Score = 67.5 bits (141), Expect(5) = 8e-072
Identities = 27/32 (84%), Positives = 28/32 (87%)
Frame = +3 / +1
Query: 390 LGDAVLDGVDFDIESGGGMYWDDLARFLKSYS 485
LGDAVLDGVDFDIESGG +WDDLAR LK YS
Sbjct: 235 LGDAVLDGVDFDIESGGSAHWDDLARELKKYS 330
Score = 45.5 bits (93), Expect(6) = 2e-050
Identities = 21/27 (77%), Positives = 22/27 (81%)
Frame = -1 / -2
Query: 475 LRNRARSSQYMPPPLSMSKSTPSRTAS 395
L +RARSSQ PPLSMSKSTPS TAS
Sbjct: 320 LSSRARSSQCALPPLSMSKSTPSSTAS 240
Score = 38.6 bits (78), Expect(5) = 8e-072
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = +2 / +1
Query: 488 GAGARGGPCTCSAAPQCPFPDASLG 562
G G+ P +AAPQCPFPDA LG
Sbjct: 331 GKGSAYKPVYLAAAPQCPFPDAMLG 405
Score = 35.4 bits (71), Expect(5) = 8e-072
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = +2 / +1
Query: 155 PALNLAGHCDPASGG 199
P LNLAGHCDPA+ G
Sbjct: 16 PLLNLAGHCDPATSG 60
Score = 31.3 bits (62), Expect(6) = 2e-050
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = -2 / -2
Query: 198 PPLAGSQWPARLSAG 154
P +AGSQWPAR S+G
Sbjct: 59 PLVAGSQWPARFSSG 15
Score = 29.0 bits (57), Expect(6) = 2e-050
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = -1 / -1
Query: 607 ELHPHVVEQP 578
ELHPHVVEQP
Sbjct: 459 ELHPHVVEQP 430
Score = 26.7 bits (52), Expect(6) = 2e-050
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = -3 / -3
Query: 557 ATRPGTGTAAQ 525
A+RPGTGTAAQ
Sbjct: 400 ASRPGTGTAAQ 368
>gb|CB879431.1|CB879431 HP02D14w HP Hordeum vulgare subsp. vulgare cDNA clone HP02D14
3-PRIME, mRNA sequence
Length = 665
Score = 199 bits (429), Expect(3) = 2e-070
Identities = 80/110 (72%), Positives = 92/110 (83%)
Frame = +2 / -3
Query: 557 LGTALATGLFDYVWVQFYNNPPCQYSASAGVGSLAKAWAQWTSIRAGRVFLGLPAAPQAA 736
LG AL TGLFDYVWVQFYNNPPCQY+ + G G+LA AW +W SI A +VFLGLPAAP AA
Sbjct: 471 LGGALGTGLFDYVWVQFYNNPPCQYTKAGGAGNLASAWQKWASIPARQVFLGLPAAPAAA 292
Query: 737 GSGFVPASDLVAQVLPVVKNSTKYGGIMLWSRYYDGLTGYSDAVKSYV*A 886
GSGFV SDL+++VLPVV+ S KYGGIMLWSR++DG TG+SD VKS V*A
Sbjct: 291 GSGFVEPSDLLSEVLPVVQKSPKYGGIMLWSRFFDGQTGFSDKVKSSV*A 142
Score = 154 bits (330), Expect(4) = 4e-050
Identities = 66/98 (67%), Positives = 70/98 (71%)
Frame = -2 / +2
Query: 885 AHT*DLTASLYPVSPS*YLDQSMMPPYLVEFLTTGSTCATRSLAGTNPLPAAWGAAGRPR 706
AHT D T SL PV PS LDQSM+PPY +F TTGST RSL TNPLPAA GAAG PR
Sbjct: 143 AHTLDFTLSLNPVCPSKNLDQSMIPPYFGDFCTTGSTSDNRSLGSTNPLPAAAGAAGSPR 322
Query: 705 NTRPALMDVHCAHAFARLPTPALALYWHGGLL*NCTHT 592
NT A +D H HA ARLP P +YWHGGLL*NCTHT
Sbjct: 323 NTCRAGIDAHFCHALARLPAPPALVYWHGGLL*NCTHT 436
Score = 71.6 bits (150), Expect(4) = 8e-023
Identities = 32/45 (71%), Positives = 34/45 (75%)
Frame = +1 / -2
Query: 550 RVAGHRARHGAVRLRVGAVLQQPAVPVQRERRRGQPGESVGAVDV 684
R A RARHG VRLRVGAVLQQPAVPV + RR GQPG+ V V V
Sbjct: 478 RRARRRARHGVVRLRVGAVLQQPAVPVHQGRRGGQPGQRVAEVGV 344
Score = 69.8 bits (146), Expect(3) = 2e-024
Identities = 28/36 (77%), Positives = 28/36 (77%)
Frame = -3 / +3
Query: 656 GCPRRRSRCTGTAGCCRTAPTRSRTAPWRARCPATR 549
GCP RR CTGTAGCCRTAPTRSRT P RAR A R
Sbjct: 372 GCPPRRPWCTGTAGCCRTAPTRSRTTPCRARRRARR 479
Score = 67.5 bits (141), Expect(3) = 2e-070
Identities = 27/32 (84%), Positives = 28/32 (87%)
Frame = +3 / -3
Query: 390 LGDAVLDGVDFDIESGGGMYWDDLARFLKSYS 485
LGDAVLDGVDFDIESGG +WDDLAR LK YS
Sbjct: 645 LGDAVLDGVDFDIESGGSAHWDDLARELKKYS 550
Score = 54.2 bits (112), Expect(3) = 2e-024
Identities = 23/40 (57%), Positives = 26/40 (65%)
Frame = -1 / +1
Query: 820 HDAPVLGGVLDHRQHLRHEVARRHEPAASGLGRGGEAEEH 701
HD VL +L HRQHL +VA HEPAA G GR E +EH
Sbjct: 208 HDPAVLRRLLHHRQHLGQQVAGLHEPAAGGRGRRREPQEH 327
Score = 45.5 bits (93), Expect(4) = 4e-050
Identities = 21/27 (77%), Positives = 22/27 (81%)
Frame = -1 / +2
Query: 475 LRNRARSSQYMPPPLSMSKSTPSRTAS 395
L +RARSSQ PPLSMSKSTPS TAS
Sbjct: 560 LSSRARSSQCALPPLSMSKSTPSSTAS 640
Score = 39.1 bits (79), Expect(4) = 8e-023
Identities = 20/32 (62%), Positives = 24/32 (75%)
Frame = +1 / -2
Query: 793 ELHQVRGHHALVQVLRRAHGVQRRGQVLRVS* 888
E+ +VR HALV+VLR A VQR G+V RVS*
Sbjct: 235 EVAEVRRDHALVEVLRWADWVQR*GEVQRVS* 140
Score = 38.6 bits (78), Expect(3) = 2e-070
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = +2 / -3
Query: 488 GAGARGGPCTCSAAPQCPFPDASLG 562
G G+ P +AAPQCPFPDA LG
Sbjct: 549 GKGSAYKPVYLAAAPQCPFPDAMLG 475
Score = 29.0 bits (57), Expect(4) = 4e-050
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = -1 / +1
Query: 607 ELHPHVVEQP 578
ELHPHVVEQP
Sbjct: 421 ELHPHVVEQP 450
Score = 26.7 bits (52), Expect(3) = 2e-024
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -2 / +2
Query: 546 GNGHCGAAEQVHG 508
GNGHCGAA + G
Sbjct: 491 GNGHCGAAARYTG 529
Score = 26.7 bits (52), Expect(4) = 4e-050
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = -3 / +3
Query: 557 ATRPGTGTAAQ 525
A+RPGTGTAAQ
Sbjct: 480 ASRPGTGTAAQ 512
Score = 26.7 bits (52), Expect(4) = 8e-023
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = +1 / -2
Query: 526 CAAVPVPGRVAGHRAR 573
CAAVPVPGR A R
Sbjct: 511 CAAVPVPGRDARRARR 464
Score = 24.4 bits (47), Expect(4) = 8e-023
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +3 / -1
Query: 759 ATSWRRCCRWSR 794
AT RCCRW R
Sbjct: 269 ATCCPRCCRWCR 234
>gb|BQ762734.1|BQ762734 EBro02_SQ004_L21_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ004_L21 5', mRNA sequence
Length = 629
Score = 99.6 bits (211), Expect(5) = 3e-066
Identities = 40/52 (76%), Positives = 44/52 (84%)
Frame = +2 / +1
Query: 191 SGGCTGVGADVKACQRMGVKVLLSIGGGVGSYGLSSRADARSVAAYLWDNYL 346
SG CT VGADVK+CQ G+KVLLSIGGGVGSYGLSS DA+ VA YLW+NYL
Sbjct: 262 SGSCTFVGADVKSCQSRGIKVLLSIGGGVGSYGLSSADDAKEVAKYLWENYL 417
Score = 87.2 bits (184), Expect(5) = 3e-066
Identities = 33/49 (67%), Positives = 37/49 (75%)
Frame = +2 / +1
Query: 53 GPERQRGXVXQTCATGNYRFVNVAFLPTFGKGQTPALNLAGHCDPASGG 199
G G + Q CATGNY+FVNVAFL TFG+GQ P LNLAGHCDPA+ G
Sbjct: 121 GQNGNEGTLAQACATGNYKFVNVAFLFTFGRGQKPLLNLAGHCDPATSG 267
Score = 85.4 bits (180), Expect(5) = 2e-044
Identities = 37/52 (71%), Positives = 39/52 (75%)
Frame = -2 / -1
Query: 345 R*LSQRYAATLRASARDESP*LPTPPPMESRTLTPMRWHALTSAPTPVHPPL 190
R* SQRY AT AS+ +E P*LPTPPPMESRTL P W LTSAPT VH PL
Sbjct: 416 R*FSQRYLATSLASSAEERP*LPTPPPMESRTLMPRLWQDLTSAPTKVHDPL 261
Score = 67.5 bits (141), Expect(5) = 3e-066
Identities = 27/32 (84%), Positives = 28/32 (87%)
Frame = +3 / +1
Query: 390 LGDAVLDGVDFDIESGGGMYWDDLARFLKSYS 485
LGDAVLDGVDFDIESGG +WDDLAR LK YS
Sbjct: 442 LGDAVLDGVDFDIESGGSAHWDDLARELKKYS 537
Score = 64.3 bits (134), Expect(5) = 2e-044
Identities = 28/43 (65%), Positives = 31/43 (72%)
Frame = -2 / -1
Query: 198 PPLAGSQWPARLSAGVCPLPNVGRKATLTNL*XPVAQVCXTSP 70
P +AGSQWPAR S+G PLP V RKATLTNL* PVA + P
Sbjct: 266 PLVAGSQWPARFSSGFWPLPKVKRKATLTNL*FPVAHA*ASVP 138
Score = 45.5 bits (93), Expect(5) = 2e-044
Identities = 21/27 (77%), Positives = 22/27 (81%)
Frame = -1 / -1
Query: 475 LRNRARSSQYMPPPLSMSKSTPSRTAS 395
L +RARSSQ PPLSMSKSTPS TAS
Sbjct: 527 LSSRARSSQCALPPLSMSKSTPSSTAS 447
Score = 38.6 bits (78), Expect(5) = 3e-066
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = +2 / +1
Query: 488 GAGARGGPCTCSAAPQCPFPDASLG 562
G G+ P +AAPQCPFPDA LG
Sbjct: 538 GKGSAYKPVYLAAAPQCPFPDAMLG 612
Score = 35.0 bits (70), Expect(5) = 3e-066
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +3 / +1
Query: 39 IAIYWGQNGNEG 74
IAIYWGQNGNEG
Sbjct: 106 IAIYWGQNGNEG 141
Score = 31.8 bits (63), Expect(5) = 2e-044
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = -2 / -2
Query: 72 PRCRSGPSRWRC 37
PRCRSGPSR RC
Sbjct: 139 PRCRSGPSRSRC 104
Score = 26.7 bits (52), Expect(5) = 2e-044
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = -3 / -2
Query: 557 ATRPGTGTAAQ 525
A+RPGTGTAAQ
Sbjct: 607 ASRPGTGTAAQ 575
>gb|BQ764132.1|BQ764132 EBro03_SQ006_I12_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ006_I12 5', mRNA sequence
Length = 537
Score = 99.6 bits (211), Expect(4) = 3e-059
Identities = 40/52 (76%), Positives = 44/52 (84%)
Frame = +2 / +1
Query: 191 SGGCTGVGADVKACQRMGVKVLLSIGGGVGSYGLSSRADARSVAAYLWDNYL 346
SG CT VGADVK+CQ G+KVLLSIGGGVGSYGLSS DA+ VA YLW+NYL
Sbjct: 259 SGSCTFVGADVKSCQSRGIKVLLSIGGGVGSYGLSSADDAKEVAKYLWENYL 414
Score = 87.2 bits (184), Expect(4) = 3e-059
Identities = 33/49 (67%), Positives = 37/49 (75%)
Frame = +2 / +1
Query: 53 GPERQRGXVXQTCATGNYRFVNVAFLPTFGKGQTPALNLAGHCDPASGG 199
G G + Q CATGNY+FVNVAFL TFG+GQ P LNLAGHCDPA+ G
Sbjct: 118 GQNGNEGTLAQACATGNYKFVNVAFLFTFGRGQKPLLNLAGHCDPATSG 264
Score = 85.4 bits (180), Expect(4) = 3e-041
Identities = 37/52 (71%), Positives = 39/52 (75%)
Frame = -2 / -2
Query: 345 R*LSQRYAATLRASARDESP*LPTPPPMESRTLTPMRWHALTSAPTPVHPPL 190
R* SQRY AT AS+ +E P*LPTPPPMESRTL P W LTSAPT VH PL
Sbjct: 413 R*FSQRYLATSLASSAEERP*LPTPPPMESRTLMPRLWQDLTSAPTKVHDPL 258
Score = 64.8 bits (135), Expect(4) = 3e-059
Identities = 26/32 (81%), Positives = 27/32 (84%)
Frame = +3 / +1
Query: 390 LGDAVLDGVDFDIESGGGMYWDDLARFLKSYS 485
LGDAVLDGVDFDI SGG +WDDLAR LK YS
Sbjct: 439 LGDAVLDGVDFDIXSGGSAHWDDLARELKKYS 534
Score = 64.3 bits (134), Expect(4) = 3e-041
Identities = 28/43 (65%), Positives = 31/43 (72%)
Frame = -2 / -2
Query: 198 PPLAGSQWPARLSAGVCPLPNVGRKATLTNL*XPVAQVCXTSP 70
P +AGSQWPAR S+G PLP V RKATLTNL* PVA + P
Sbjct: 263 PLVAGSQWPARFSSGFWPLPKVKRKATLTNL*FPVAHA*ASVP 135
Score = 43.7 bits (89), Expect(4) = 3e-041
Identities = 20/27 (74%), Positives = 21/27 (77%)
Frame = -1 / -2
Query: 475 LRNRARSSQYMPPPLSMSKSTPSRTAS 395
L +RARSSQ PPL MSKSTPS TAS
Sbjct: 524 LSSRARSSQCALPPLXMSKSTPSSTAS 444
Score = 35.0 bits (70), Expect(4) = 3e-059
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +3 / +1
Query: 39 IAIYWGQNGNEG 74
IAIYWGQNGNEG
Sbjct: 103 IAIYWGQNGNEG 138
Score = 31.8 bits (63), Expect(4) = 3e-041
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = -2 / -3
Query: 72 PRCRSGPSRWRC 37
PRCRSGPSR RC
Sbjct: 136 PRCRSGPSRSRC 101
>gb|CB877860.1|CB877860 HP06H01T HP Hordeum vulgare subsp. vulgare cDNA clone HP06H01
5-PRIME, mRNA sequence
Length = 509
Score = 99.6 bits (211), Expect(4) = 1e-058
Identities = 40/52 (76%), Positives = 44/52 (84%)
Frame = +2 / +3
Query: 191 SGGCTGVGADVKACQRMGVKVLLSIGGGVGSYGLSSRADARSVAAYLWDNYL 346
SG CT VGADVK+CQ G+KVLLSIGGGVGSYGLSS DA+ VA YLW+NYL
Sbjct: 243 SGSCTFVGADVKSCQSRGIKVLLSIGGGVGSYGLSSADDAKEVAKYLWENYL 398
Score = 87.2 bits (184), Expect(4) = 1e-058
Identities = 33/49 (67%), Positives = 37/49 (75%)
Frame = +2 / +3
Query: 53 GPERQRGXVXQTCATGNYRFVNVAFLPTFGKGQTPALNLAGHCDPASGG 199
G G + Q CATGNY+FVNVAFL TFG+GQ P LNLAGHCDPA+ G
Sbjct: 102 GQNGNEGTLAQACATGNYKFVNVAFLFTFGRGQKPLLNLAGHCDPATSG 248
Score = 85.4 bits (180), Expect(4) = 9e-042
Identities = 37/52 (71%), Positives = 39/52 (75%)
Frame = -2 / -2
Query: 345 R*LSQRYAATLRASARDESP*LPTPPPMESRTLTPMRWHALTSAPTPVHPPL 190
R* SQRY AT AS+ +E P*LPTPPPMESRTL P W LTSAPT VH PL
Sbjct: 397 R*FSQRYLATSLASSAEERP*LPTPPPMESRTLMPRLWQDLTSAPTKVHDPL 242
Score = 64.3 bits (134), Expect(4) = 9e-042
Identities = 28/43 (65%), Positives = 31/43 (72%)
Frame = -2 / -2
Query: 198 PPLAGSQWPARLSAGVCPLPNVGRKATLTNL*XPVAQVCXTSP 70
P +AGSQWPAR S+G PLP V RKATLTNL* PVA + P
Sbjct: 247 PLVAGSQWPARFSSGFWPLPKVKRKATLTNL*FPVAHA*ASVP 119
Score = 62.5 bits (130), Expect(4) = 1e-058
Identities = 25/29 (86%), Positives = 26/29 (89%)
Frame = +3 / +3
Query: 390 LGDAVLDGVDFDIESGGGMYWDDLARFLK 476
LGDAVLDGVDFDIESGG +WDDLAR LK
Sbjct: 423 LGDAVLDGVDFDIESGGSAHWDDLARELK 509
Score = 45.5 bits (93), Expect(4) = 9e-042
Identities = 21/27 (77%), Positives = 22/27 (81%)
Frame = -1 / -2
Query: 475 LRNRARSSQYMPPPLSMSKSTPSRTAS 395
L +RARSSQ PPLSMSKSTPS TAS
Sbjct: 508 LSSRARSSQCALPPLSMSKSTPSSTAS 428
Score = 35.0 bits (70), Expect(4) = 1e-058
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +3 / +3
Query: 39 IAIYWGQNGNEG 74
IAIYWGQNGNEG
Sbjct: 87 IAIYWGQNGNEG 122
Score = 31.8 bits (63), Expect(4) = 9e-042
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = -2 / -3
Query: 72 PRCRSGPSRWRC 37
PRCRSGPSR RC
Sbjct: 120 PRCRSGPSRSRC 85
>gb|CB878248.1|CB878248 HP07N14T HP Hordeum vulgare subsp. vulgare cDNA clone HP07N14
5-PRIME, mRNA sequence
Length = 506
Score = 99.6 bits (211), Expect(4) = 6e-058
Identities = 40/52 (76%), Positives = 44/52 (84%)
Frame = +2 / +3
Query: 191 SGGCTGVGADVKACQRMGVKVLLSIGGGVGSYGLSSRADARSVAAYLWDNYL 346
SG CT VGADVK+CQ G+KVLLSIGGGVGSYGLSS DA+ VA YLW+NYL
Sbjct: 243 SGSCTFVGADVKSCQSRGIKVLLSIGGGVGSYGLSSADDAKEVAKYLWENYL 398
Score = 87.2 bits (184), Expect(4) = 6e-058
Identities = 33/49 (67%), Positives = 37/49 (75%)
Frame = +2 / +3
Query: 53 GPERQRGXVXQTCATGNYRFVNVAFLPTFGKGQTPALNLAGHCDPASGG 199
G G + Q CATGNY+FVNVAFL TFG+GQ P LNLAGHCDPA+ G
Sbjct: 102 GQNGNEGTLAQACATGNYKFVNVAFLFTFGRGQKPLLNLAGHCDPATSG 248
Score = 85.4 bits (180), Expect(4) = 2e-041
Identities = 37/52 (71%), Positives = 39/52 (75%)
Frame = -2 / -2
Query: 345 R*LSQRYAATLRASARDESP*LPTPPPMESRTLTPMRWHALTSAPTPVHPPL 190
R* SQRY AT AS+ +E P*LPTPPPMESRTL P W LTSAPT VH PL
Sbjct: 397 R*FSQRYLATSLASSAEERP*LPTPPPMESRTLMPRLWQDLTSAPTKVHDPL 242
Score = 64.3 bits (134), Expect(4) = 2e-041
Identities = 28/43 (65%), Positives = 31/43 (72%)
Frame = -2 / -2
Query: 198 PPLAGSQWPARLSAGVCPLPNVGRKATLTNL*XPVAQVCXTSP 70
P +AGSQWPAR S+G PLP V RKATLTNL* PVA + P
Sbjct: 247 PLVAGSQWPARFSSGFWPLPKVKRKATLTNL*FPVAHA*ASVP 119
Score = 60.2 bits (125), Expect(4) = 6e-058
Identities = 24/28 (85%), Positives = 25/28 (89%)
Frame = +3 / +3
Query: 390 LGDAVLDGVDFDIESGGGMYWDDLARFL 473
LGDAVLDGVDFDIESGG +WDDLAR L
Sbjct: 423 LGDAVLDGVDFDIESGGSAHWDDLAREL 506
Score = 44.1 bits (90), Expect(4) = 2e-041
Identities = 20/25 (80%), Positives = 21/25 (84%)
Frame = -1 / -2
Query: 469 NRARSSQYMPPPLSMSKSTPSRTAS 395
+RARSSQ PPLSMSKSTPS TAS
Sbjct: 502 SRARSSQCALPPLSMSKSTPSSTAS 428
Score = 35.0 bits (70), Expect(4) = 6e-058
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +3 / +3
Query: 39 IAIYWGQNGNEG 74
IAIYWGQNGNEG
Sbjct: 87 IAIYWGQNGNEG 122
Score = 31.8 bits (63), Expect(4) = 2e-041
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = -2 / -3
Query: 72 PRCRSGPSRWRC 37
PRCRSGPSR RC
Sbjct: 120 PRCRSGPSRSRC 85
>gb|BF267787.2|BF267787 HV_CEa0018O07f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0018O07f, mRNA sequence
Length = 828
Score = 97.7 bits (207), Expect(4) = 1e-050
Identities = 39/52 (75%), Positives = 43/52 (82%)
Frame = +2 / +3
Query: 191 SGGCTGVGADVKACQRMGVKVLLSIGGGVGSYGLSSRADARSVAAYLWDNYL 346
SG CT VGADVK+CQ G+KVLLSIGGGVGSYGLSS D + VA YLW+NYL
Sbjct: 264 SGSCTFVGADVKSCQSRGIKVLLSIGGGVGSYGLSSADDTKEVAKYLWENYL 419
Score = 87.2 bits (184), Expect(4) = 1e-050
Identities = 33/49 (67%), Positives = 37/49 (75%)
Frame = +2 / +3
Query: 53 GPERQRGXVXQTCATGNYRFVNVAFLPTFGKGQTPALNLAGHCDPASGG 199
G G + Q CATGNY+FVNVAFL TFG+GQ P LNLAGHCDPA+ G
Sbjct: 123 GQNGNEGTLAQACATGNYKFVNVAFLFTFGRGQKPLLNLAGHCDPATSG 269
Score = 81.3 bits (171), Expect(3) = 2e-032
Identities = 35/52 (67%), Positives = 37/52 (71%)
Frame = -2 / -3
Query: 345 R*LSQRYAATLRASARDESP*LPTPPPMESRTLTPMRWHALTSAPTPVHPPL 190
R* S RY AT S+ +E P*LPTPPPMESRTL P W LTSAPT VH PL
Sbjct: 418 R*FSHRYLATSLVSSAEERP*LPTPPPMESRTLMPRLWQDLTSAPTKVHDPL 263
Score = 64.3 bits (134), Expect(3) = 2e-032
Identities = 28/43 (65%), Positives = 31/43 (72%)
Frame = -2 / -3
Query: 198 PPLAGSQWPARLSAGVCPLPNVGRKATLTNL*XPVAQVCXTSP 70
P +AGSQWPAR S+G PLP V RKATLTNL* PVA + P
Sbjct: 268 PLVAGSQWPARFSSGFWPLPKVKRKATLTNL*FPVAHA*ASVP 140
Score = 37.3 bits (75), Expect(4) = 1e-050
Identities = 16/28 (57%), Positives = 20/28 (71%)
Frame = +3 / +3
Query: 390 LGDAVLDGVDFDIESGGGMYWDDLARFL 473
LGDA+LDG D D+ SGG + D+L R L
Sbjct: 444 LGDAMLDGRDCDMNSGGSAH*DNLTRDL 527
Score = 35.0 bits (70), Expect(4) = 1e-050
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +3 / +3
Query: 39 IAIYWGQNGNEG 74
IAIYWGQNGNEG
Sbjct: 108 IAIYWGQNGNEG 143
Score = 31.8 bits (63), Expect(3) = 2e-032
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = -2 / -1
Query: 72 PRCRSGPSRWRC 37
PRCRSGPSR RC
Sbjct: 141 PRCRSGPSRSRC 106
>gb|BI952762.1|BI952762 HVSMEm0007K18f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0007K18f, mRNA sequence
Length = 418
Score = 94.1 bits (199), Expect(4) = 1e-046
Identities = 35/52 (67%), Positives = 40/52 (76%)
Frame = +2 / +1
Query: 557 LGTALATGLFDYVWVQFYNNPPCQYSASAGVGSLAKAWAQWTSIRAGRVFLG 712
LG AL TGLF YVWVQFYNNPPC Y+ + G G+LA AW +W SI A +VFLG
Sbjct: 262 LGGALGTGLFHYVWVQFYNNPPCHYTKAGGAGNLASAWQKWASIPARQVFLG 417
Score = 84.5 bits (178), Expect(4) = 1e-046
Identities = 32/50 (64%), Positives = 36/50 (72%)
Frame = +2 / +1
Query: 53 GPERQRGXVXQTCATGNYRFVNVAFLPTFGKGQTPALNLAGHCDPASGGC 202
G G + Q CATGNY+FVNVAFL TFG+G P LNLAGHCDPA+ C
Sbjct: 85 GQNGNEGTLAQACATGNYKFVNVAFLFTFGRGHKPLLNLAGHCDPAAPQC 234
Score = 65.7 bits (137), Expect(5) = 9e-032
Identities = 26/40 (65%), Positives = 28/40 (70%)
Frame = -2 / -3
Query: 711 PRNTRPALMDVHCAHAFARLPTPALALYWHGGLL*NCTHT 592
PRNT A +D H HA ARLP P + WHGGLL*NCTHT
Sbjct: 416 PRNTCRAGIDAHFCHALARLPAPPALV*WHGGLL*NCTHT 297
Score = 63.8 bits (133), Expect(5) = 9e-032
Identities = 28/44 (63%), Positives = 31/44 (70%)
Frame = -2 / -3
Query: 201 HPPLAGSQWPARLSAGVCPLPNVGRKATLTNL*XPVAQVCXTSP 70
H AGSQWPAR S+G+ PLP V RKATLTNL* PVA + P
Sbjct: 233 HCGAAGSQWPARFSSGLWPLPKVKRKATLTNL*FPVAHA*ASVP 102
Score = 34.1 bits (68), Expect(4) = 1e-046
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = +2 / +1
Query: 524 AAPQCPFPDASLG 562
AAPQCPFPDA LG
Sbjct: 220 AAPQCPFPDAMLG 258
Score = 33.1 bits (66), Expect(4) = 1e-046
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = +3 / +1
Query: 39 IAIYWGQNGNEG 74
I IYWGQNGNEG
Sbjct: 70 ITIYWGQNGNEG 105
Score = 29.5 bits (58), Expect(5) = 9e-032
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = -1 / -3
Query: 73 PSLPFWPQ*MAM 38
PSLPFWPQ*+ M
Sbjct: 104 PSLPFWPQ*IVM 69
Score = 27.2 bits (53), Expect(5) = 9e-032
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -1 / -2
Query: 607 ELHPHVVEQP 578
+LHPHVVEQP
Sbjct: 312 KLHPHVVEQP 283
Score = 25.4 bits (49), Expect(5) = 9e-032
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2 / -3
Query: 546 GNGHCGAA 523
GNGHCGAA
Sbjct: 242 GNGHCGAA 219
>gb|BQ768001.1|BQ768001 EBro08_SQ010_M09_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ010_M09 5', mRNA sequence
Length = 440
Score = 99.6 bits (211), Expect(3) = 2e-045
Identities = 40/52 (76%), Positives = 44/52 (84%)
Frame = +2 / +1
Query: 191 SGGCTGVGADVKACQRMGVKVLLSIGGGVGSYGLSSRADARSVAAYLWDNYL 346
SG CT VGADVK+CQ G+KVLLSIGGGVGSYGLSS DA+ VA YLW+NYL
Sbjct: 259 SGSCTFVGADVKSCQSRGIKVLLSIGGGVGSYGLSSADDAKEVAKYLWENYL 414
Score = 87.2 bits (184), Expect(3) = 2e-045
Identities = 33/49 (67%), Positives = 37/49 (75%)
Frame = +2 / +1
Query: 53 GPERQRGXVXQTCATGNYRFVNVAFLPTFGKGQTPALNLAGHCDPASGG 199
G G + Q CATGNY+FVNVAFL TFG+GQ P LNLAGHCDPA+ G
Sbjct: 118 GQNGNEGTLAQACATGNYKFVNVAFLFTFGRGQKPLLNLAGHCDPATSG 264
Score = 85.4 bits (180), Expect(3) = 1e-033
Identities = 37/52 (71%), Positives = 39/52 (75%)
Frame = -2 / -1
Query: 345 R*LSQRYAATLRASARDESP*LPTPPPMESRTLTPMRWHALTSAPTPVHPPL 190
R* SQRY AT AS+ +E P*LPTPPPMESRTL P W LTSAPT VH PL
Sbjct: 413 R*FSQRYLATSLASSAEERP*LPTPPPMESRTLMPRLWQDLTSAPTKVHDPL 258
Score = 64.3 bits (134), Expect(3) = 1e-033
Identities = 28/43 (65%), Positives = 31/43 (72%)
Frame = -2 / -1
Query: 198 PPLAGSQWPARLSAGVCPLPNVGRKATLTNL*XPVAQVCXTSP 70
P +AGSQWPAR S+G PLP V RKATLTNL* PVA + P
Sbjct: 263 PLVAGSQWPARFSSGFWPLPKVKRKATLTNL*FPVAHA*ASVP 135
Score = 35.0 bits (70), Expect(3) = 2e-045
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +3 / +1
Query: 39 IAIYWGQNGNEG 74
IAIYWGQNGNEG
Sbjct: 103 IAIYWGQNGNEG 138
Score = 31.8 bits (63), Expect(3) = 1e-033
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = -2 / -2
Query: 72 PRCRSGPSRWRC 37
PRCRSGPSR RC
Sbjct: 136 PRCRSGPSRSRC 101
>gb|CB876733.1|CB876733 HP02D14T HP Hordeum vulgare subsp. vulgare cDNA clone HP02D14
5-PRIME, mRNA sequence
Length = 340
Score = 99.6 bits (211), Expect(3) = 6e-040
Identities = 40/52 (76%), Positives = 44/52 (84%)
Frame = +2 / +2
Query: 191 SGGCTGVGADVKACQRMGVKVLLSIGGGVGSYGLSSRADARSVAAYLWDNYL 346
SG CT VGADVK+CQ G+KVLLSIGGGVGSYGLSS DA+ VA YLW+NYL
Sbjct: 62 SGSCTFVGADVKSCQSRGIKVLLSIGGGVGSYGLSSADDAKEVAKYLWENYL 217
Score = 85.4 bits (180), Expect(3) = 9e-028
Identities = 37/52 (71%), Positives = 39/52 (75%)
Frame = -2 / -2
Query: 345 R*LSQRYAATLRASARDESP*LPTPPPMESRTLTPMRWHALTSAPTPVHPPL 190
R* SQRY AT AS+ +E P*LPTPPPMESRTL P W LTSAPT VH PL
Sbjct: 216 R*FSQRYLATSLASSAEERP*LPTPPPMESRTLMPRLWQDLTSAPTKVHDPL 61
Score = 66.1 bits (138), Expect(3) = 6e-040
Identities = 26/32 (81%), Positives = 28/32 (87%)
Frame = +3 / +2
Query: 390 LGDAVLDGVDFDIESGGGMYWDDLARFLKSYS 485
LGDAVLDGVDFDIESGG +WDDL+R LK YS
Sbjct: 242 LGDAVLDGVDFDIESGGSAHWDDLSRELKKYS 337
Score = 42.8 bits (87), Expect(3) = 9e-028
Identities = 20/27 (74%), Positives = 21/27 (77%)
Frame = -1 / -2
Query: 475 LRNRARSSQYMPPPLSMSKSTPSRTAS 395
L +R RSSQ PPLSMSKSTPS TAS
Sbjct: 327 LSSRDRSSQCALPPLSMSKSTPSSTAS 247
Score = 37.3 bits (75), Expect(3) = 6e-040
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +2 / +2
Query: 143 KGQTPALNLAGHCDPASGG 199
+G P LNLAGHCDPA+ G
Sbjct: 11 RGCRPLLNLAGHCDPATSG 67
Score = 33.6 bits (67), Expect(3) = 9e-028
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = -2 / -2
Query: 198 PPLAGSQWPARLSAGVCP 145
P +AGSQWPAR S+G+ P
Sbjct: 66 PLVAGSQWPARFSSGLQP 13
>gb|BF631287.2|BF631287 HVSMEb0015I04f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0015I04f, mRNA sequence
Length = 746
Score = 129 bits (277), Expect(2) = 3e-034
Identities = 54/88 (61%), Positives = 63/88 (71%)
Frame = +2 / +1
Query: 557 LGTALATGLFDYVWVQFYNNPPCQYSASAGVGSLAKAWAQWTSIRAGRVFLGLPAAPQAA 736
LG AL TGLFDYVWVQFYNNPPCQY+ + G G+LA AW +W SI A +VFLGLPAAP A
Sbjct: 61 LGGALGTGLFDYVWVQFYNNPPCQYTKAGGAGNLASAWHKWASIPARQVFLGLPAAPAAT 240
Query: 737 GSGFVPASDLVAQVLPVVKNSTKYGGIM 820
GSGF ++L +VL ST Y I+
Sbjct: 241 GSGFEEPNNLKTRVLTEELKSTIYCRIL 324
Score = 105 bits (225), Expect(3) = 9e-028
Identities = 43/72 (59%), Positives = 50/72 (69%)
Frame = -2 / -1
Query: 807 YLVEFLTTGSTCATRSLAGTNPLPAAWGAAGRPRNTRPALMDVHCAHAFARLPTPALALY 628
Y+V+F ++ ST R L +NPLP A GAAG PRNT A +D H HA ARLP P +Y
Sbjct: 311 YIVDFSSSVSTLVFRLLGSSNPLPVAAGAAGSPRNTCRAGIDAHLCHALARLPAPPALVY 132
Query: 627 WHGGLL*NCTHT 592
WHGGLL*NCTHT
Sbjct: 131 WHGGLL*NCTHT 96
Score = 35.9 bits (72), Expect(2) = 3e-034
Identities = 13/18 (72%), Positives = 14/18 (77%)
Frame = +2 / +1
Query: 509 PCTCSAAPQCPFPDASLG 562
P +AAPQCPFPDA LG
Sbjct: 4 PVYLAAAPQCPFPDAMLG 57
Score = 29.0 bits (57), Expect(3) = 9e-028
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = -1 / -3
Query: 607 ELHPHVVEQP 578
ELHPHVVEQP
Sbjct: 111 ELHPHVVEQP 82
Score = 26.7 bits (52), Expect(3) = 9e-028
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -2 / -1
Query: 546 GNGHCGAAEQVHG 508
GNGHCGAA + G
Sbjct: 41 GNGHCGAAARYTG 3
>gb|BG369379.2|BG369379 HVSMEi0024C18f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0024C18f, mRNA sequence
Length = 859
Score = 55.1 bits (114), Expect(5) = 2e-028
Identities = 24/57 (42%), Positives = 31/57 (54%)
Frame = +2 / +2
Query: 176 HCDPASGGCTGVGADVKACQRMGVKVLLSIGGGVGSYGLSSRADARSVAAYLWDNYL 346
H D + + VGAD+K CQ + V LSIGG Y L + A VA YLW+ Y+
Sbjct: 230 HLDLSGHDVSAVGADIKHCQSKNILVFLSIGGFGKQYSLPTAHSAADVAYYLWNAYM 400
Score = 46.4 bits (95), Expect(5) = 2e-028
Identities = 18/50 (36%), Positives = 29/50 (58%)
Frame = +2 / +2
Query: 509 PCTCSAAPQCPFPDASLGTALATGLFDYVWVQFYNNPPCQYSASAGVGSL 658
P +A P+C +PD + ALATGL ++V+FY++ C + VG +
Sbjct: 548 PVQLTATPRCGYPDRHVERALATGLEGRIFVRFYDDADCACQLAKAVGQV 697
Score = 35.9 bits (72), Expect(5) = 2e-028
Identities = 14/31 (45%), Positives = 23/31 (74%)
Frame = +3 / +2
Query: 393 GDAVLDGVDFDIESGGGMYWDDLARFLKSYS 485
GDA +DG+DF IE+G +D+LA+ L +++
Sbjct: 434 GDAFVDGIDFFIENGAPDNYDELAKRLWNFN 526
Score = 34.1 bits (68), Expect(5) = 2e-028
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2 / +2
Query: 53 GPERQRGXVXQTCATGNYRFVNVAFLPTFGKG 148
G + G + + C TG Y ++FL FG+G
Sbjct: 128 GRNKNEGSLREACDTGTYTIAIISFLDVFGRG 223
Score = 26.7 bits (52), Expect(5) = 2e-028
Identities = 7/12 (58%), Positives = 11/12 (91%)
Frame = +3 / +2
Query: 39 IAIYWGQNGNEG 74
+A++WG+N NEG
Sbjct: 113 VAVFWGRNKNEG 148
>gb|BG368670.1|BG368670 HVSMEi0020C19f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0020C19f, mRNA sequence
Length = 830
Score = 55.1 bits (114), Expect(5) = 1e-027
Identities = 24/57 (42%), Positives = 31/57 (54%)
Frame = +2 / +1
Query: 176 HCDPASGGCTGVGADVKACQRMGVKVLLSIGGGVGSYGLSSRADARSVAAYLWDNYL 346
H D + + VGAD+K CQ + V LSIGG Y L + A VA YLW+ Y+
Sbjct: 235 HLDLSGHDVSAVGADIKHCQSKNILVFLSIGGFGKQYSLPTAHSAADVAYYLWNAYM 405
Score = 44.1 bits (90), Expect(5) = 1e-027
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = +2 / +1
Query: 509 PCTCSAAPQCPFPDASLGTALATGLFDYVWVQFYNNPPC 625
P +A P+C +PD + ALATGL ++V+FY++ C
Sbjct: 553 PVQLTATPRCGYPDRHVERALATGLVGRIFVRFYDDADC 669
Score = 35.0 bits (70), Expect(5) = 1e-027
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = +3 / +1
Query: 393 GDAVLDGVDFDIESGGGMYWDDLARFLKSYS 485
GDA DG+DF IE+G +D+LA+ L +++
Sbjct: 439 GDAFTDGIDFFIENGAPDNYDELAKRLWNFN 531
Score = 34.1 bits (68), Expect(5) = 1e-027
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2 / +1
Query: 53 GPERQRGXVXQTCATGNYRFVNVAFLPTFGKG 148
G + G + + C TG Y ++FL FG+G
Sbjct: 133 GRNKNEGSLREACDTGTYTIAIISFLDVFGRG 228
Score = 26.7 bits (52), Expect(5) = 1e-027
Identities = 7/12 (58%), Positives = 11/12 (91%)
Frame = +3 / +1
Query: 39 IAIYWGQNGNEG 74
+A++WG+N NEG
Sbjct: 118 VAVFWGRNKNEG 153
>gb|CB877554.1|CB877554 HP05F18T HP Hordeum vulgare subsp. vulgare cDNA clone HP05F18
5-PRIME, mRNA sequence
Length = 590
Score = 53.3 bits (110), Expect(5) = 8e-026
Identities = 23/57 (40%), Positives = 30/57 (52%)
Frame = +2 / +3
Query: 176 HCDPASGGCTGVGADVKACQRMGVKVLLSIGGGVGSYGLSSRADARSVAAYLWDNYL 346
H D + + VGAD+K CQ + V LSIGG Y L + VA YLW+ Y+
Sbjct: 153 HLDLSGHDVSAVGADIKHCQSKNILVFLSIGGFGKQYSLPTAHSVADVAYYLWNAYM 323
Score = 39.6 bits (80), Expect(5) = 8e-026
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +2 / +3
Query: 509 PCTCSAAPQCPFPDASLGTALATGLFDYVWVQFYNNPPC 625
P +A +C +PD + ALATGL ++V+FY++ C
Sbjct: 471 PVQLTATLRCGYPDRHVERALATGLVGRIFVRFYDDADC 587
Score = 35.9 bits (72), Expect(5) = 8e-026
Identities = 14/31 (45%), Positives = 23/31 (74%)
Frame = +3 / +3
Query: 393 GDAVLDGVDFDIESGGGMYWDDLARFLKSYS 485
GDA +DG+DF IE+G +D+LA+ L +++
Sbjct: 357 GDAFVDGIDFFIENGAPDNYDELAKRLWNFN 449
Score = 34.1 bits (68), Expect(5) = 8e-026
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2 / +3
Query: 53 GPERQRGXVXQTCATGNYRFVNVAFLPTFGKG 148
G + G + + C TG Y ++FL FG+G
Sbjct: 51 GRNKNEGSLREACDTGTYTIAIISFLDVFGRG 146
Score = 26.3 bits (51), Expect(5) = 8e-026
Identities = 7/12 (58%), Positives = 11/12 (91%)
Frame = +3 / +3
Query: 39 IAIYWGQNGNEG 74
+A++WG+N NEG
Sbjct: 36 LAVFWGRNKNEG 71
>gb|BM443361.2|BM443361 EBro02_SQ003_M08_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ003_M08 5', mRNA sequence
Length = 311
Score = 87.2 bits (184), Expect(3) = 1e-025
Identities = 33/49 (67%), Positives = 37/49 (75%)
Frame = +2 / +1
Query: 53 GPERQRGXVXQTCATGNYRFVNVAFLPTFGKGQTPALNLAGHCDPASGG 199
G G + Q CATGNY+FVNVAFL TFG+GQ P LNLAGHCDPA+ G
Sbjct: 121 GQNGNEGTLAQACATGNYKFVNVAFLFTFGRGQKPLLNLAGHCDPATSG 267
Score = 35.0 bits (70), Expect(3) = 1e-025
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +3 / +1
Query: 39 IAIYWGQNGNEG 74
IAIYWGQNGNEG
Sbjct: 106 IAIYWGQNGNEG 141
Score = 32.7 bits (65), Expect(3) = 1e-025
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = +2 / +1
Query: 191 SGGCTGVGADVKACQ 235
SG CT VGADVK+CQ
Sbjct: 262 SGSCTFVGADVKSCQ 306
>gb|AL505584.1|AL505584 AL505584 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW08O17V 5', mRNA sequence
Length = 691
Score = 55.1 bits (114), Expect(5) = 8e-023
Identities = 24/57 (42%), Positives = 31/57 (54%)
Frame = +2 / +3
Query: 176 HCDPASGGCTGVGADVKACQRMGVKVLLSIGGGVGSYGLSSRADARSVAAYLWDNYL 346
H D + + VGAD+K CQ + V LSIGG Y L + A VA YLW+ Y+
Sbjct: 246 HLDLSGHDVSAVGADIKHCQSKNILVFLSIGGFGKQYSLPTAHSAADVAYYLWNAYM 416
Score = 35.9 bits (72), Expect(5) = 8e-023
Identities = 14/31 (45%), Positives = 23/31 (74%)
Frame = +3 / +3
Query: 393 GDAVLDGVDFDIESGGGMYWDDLARFLKSYS 485
GDA +DG+DF IE+G +D+LA+ L +++
Sbjct: 450 GDAFVDGIDFFIENGAPDNYDELAKRLWNFN 542
Score = 34.1 bits (68), Expect(5) = 8e-023
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2 / +3
Query: 53 GPERQRGXVXQTCATGNYRFVNVAFLPTFGKG 148
G + G + + C TG Y ++FL FG+G
Sbjct: 144 GRNKNEGSLREACDTGTYTIAIISFLDVFGRG 239
Score = 26.7 bits (52), Expect(5) = 8e-023
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1 / +2
Query: 529 AAVPVPGRVAGHRARHGAVR 588
AAV +PG G ARHGA R
Sbjct: 584 AAVRLPGPARGAGARHGARR 643
Score = 26.7 bits (52), Expect(5) = 8e-023
Identities = 7/12 (58%), Positives = 11/12 (91%)
Frame = +3 / +3
Query: 39 IAIYWGQNGNEG 74
+A++WG+N NEG
Sbjct: 129 VAVFWGRNKNEG 164
>gb|AL450587.1|AL450587 AL450587 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK03E19u 5', mRNA sequence
Length = 511
Score = 75.8 bits (159), Expect(2) = 9e-023
Identities = 32/64 (50%), Positives = 42/64 (65%)
Frame = +2 / +2
Query: 692 AGRVFLGLPAAPQAAGSGFVPASDLVAQVLPVVKNSTKYGGIMLWSRYYDGLTGYSDAVK 871
+G +LG+PA+ AAGSG+V DL + VLP V ++ YGGIM+W RY D YS+ VK
Sbjct: 119 SGGFYLGVPASTAAAGSGYVSPGDLTSAVLPGVTGASNYGGIMVWDRYNDVQNSYSEQVK 298
Query: 872 SYV* 883
V*
Sbjct: 299 DSV* 310
Score = 51.5 bits (106), Expect(2) = 9e-023
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = +2 / +2
Query: 578 GLFDYVWVQFYNNPPCQYSA 637
GLFD VWVQFYNNPPCQY++
Sbjct: 2 GLFDNVWVQFYNNPPCQYAS 61
>gb|AL504101.1|AL504101 AL504101 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW04D09V 5', mRNA sequence
Length = 700
Score = 55.1 bits (114), Expect(4) = 4e-022
Identities = 24/57 (42%), Positives = 31/57 (54%)
Frame = +2 / +3
Query: 176 HCDPASGGCTGVGADVKACQRMGVKVLLSIGGGVGSYGLSSRADARSVAAYLWDNYL 346
H D + + VGAD+K CQ + V LSIGG Y L + A VA YLW+ Y+
Sbjct: 117 HLDLSGHDVSAVGADIKHCQSKNILVFLSIGGFGKQYSLPTAHSAADVAYYLWNAYM 287
Score = 37.3 bits (75), Expect(4) = 4e-022
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +2 / +3
Query: 509 PCTCSAAPQCPFPDASLGTALATGLFDYVWVQFYNNPPC 625
P + +C +PD + ALATGL ++V+FY++ C
Sbjct: 435 PXQLTXTLRCGYPDRHVERALATGLVGRIFVRFYDDADC 551
Score = 35.9 bits (72), Expect(4) = 4e-022
Identities = 14/31 (45%), Positives = 23/31 (74%)
Frame = +3 / +3
Query: 393 GDAVLDGVDFDIESGGGMYWDDLARFLKSYS 485
GDA +DG+DF IE+G +D+LA+ L +++
Sbjct: 321 GDAFVDGIDFFIENGAPDNYDELAKRLWNFN 413
Score = 31.3 bits (62), Expect(4) = 4e-022
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2 / +3
Query: 71 GXVXQTCATGNYRFVNVAFLPTFGKG 148
G + + C TG Y ++FL FG+G
Sbjct: 33 GSLREACDTGTYTIAIISFLDVFGRG 110
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 451,476,006
Number of Sequences: 312970
Number of extensions: 8263702
Number of successful extensions: 168810
Number of sequences better than 1.0e-020: 28
length of database: 58,378,179
effective HSP length: 52
effective length of database: 42,103,739
effective search space used: 12883744134
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)