TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8161196.3.1
(825 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE558327.2|BE558327 HV_CEb0017D19f Hordeum vulgare seedl... 267 5e-071
gb|BI950228.1|BI950228 HVSMEl0019K24f Hordeum vulgare spike... 239 1e-062
gb|BQ458955.1|BQ458955 HA02L20r HA Hordeum vulgare subsp. v... 232 3e-060
gb|BF631488.2|BF631488 HVSMEb0016C05f Hordeum vulgare seedl... 168 8e-043
gb|AV833264.1|AV833264 AV833264 K. Sato unpublished cDNA li... 143 1e-033
gb|BF628377.3|BF628377 HVSMEb0003N23f Hordeum vulgare seedl... 121 6e-027
>gb|BE558327.2|BE558327 HV_CEb0017D19f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0017D19f, mRNA sequence
Length = 800
Score = 267 bits (578), Expect = 5e-071
Identities = 105/139 (75%), Positives = 116/139 (83%)
Frame = +3 / +1
Query: 345 SLILSRIMVPLCGFCGKQRSMIYCRSDAASLCLSCDRSVHSANALSRRHRRTLLCDRCGL 524
+L + IM LC +CG+ RSM+YCRSDAASLCLSCDR+VHSANALSRRH RTLLCDRC
Sbjct: 292 ALSIKTIMGALCDYCGEHRSMVYCRSDAASLCLSCDRNVHSANALSRRHTRTLLCDRCAS 471
Query: 525 QPASVRCLEDNTSLCQNCDWNGHDAASGASGHKRQAINCYSGCPSSAELSRIWSFITDIP 704
QPA VRCLE+NTSLCQNCDWNGH A S A+GHKRQ INCYSGCPSSAELSR+WSFI DIP
Sbjct: 472 QPAMVRCLEENTSLCQNCDWNGHSAGSSAAGHKRQNINCYSGCPSSAELSRMWSFIXDIP 651
Query: 705 TVAAEPNYEDGLSMMTIDD 761
VA E N E +SMM+I D
Sbjct: 652 NVAPELNCEQVISMMSISD 708
Score = 183 bits (394), Expect = 1e-045
Identities = 84/135 (62%), Positives = 95/135 (70%)
Frame = -3 / -1
Query: 763 LSSIVIMLSPSS*LGSAATVGISVINDQILESSADDGHPE*QFMACLLCPEAPDAASCPF 584
LS ++IML S S AT+GIS +ND ILESSADDGHPE*QF+ CLLCP A D A CPF
Sbjct: 710 LSLMLIMLITCSQFSSGATLGISXMNDHILESSADDGHPE*QFIFCLLCPAAEDPALCPF 531
Query: 583 QSQFWQSDVLSSRHRTDAGCKPXXXXXXXXXXXRDSALAE*TLRSHDKHNDAASDLQ*II 404
QSQFWQS+V SSR RT AGC+ R+ ALAE TLRSHDKH +AASD Q* +
Sbjct: 530 QSQFWQSEVFSSRQRTMAGCEAHRSHRRVLVWRRERALAECTLRSHDKHKEAASDRQ*TM 351
Query: 403 DLCFPQKPQRGTMIL 359
DLC PQ QR MI+
Sbjct: 350 DLCSPQ*SQRAPMIV 306
Score = 153 bits (328), Expect = 1e-036
Identities = 73/134 (54%), Positives = 92/134 (68%)
Frame = +2 / +3
Query: 362 DHGSSLWFLWETKVNDLLQIGCGIIVLIMRP*RSFS*CTVSAS*KDPSL*SLWFTACISP 541
+HG SL LW V+ LL I C + VL+MRP +FS*C+ SA K+PS+* + FTAC P
Sbjct: 309 NHGCSLRLLWGA*VHGLLPIRCSLFVLVMRPQCAFS*CSFSAPYKNPSM*PVCFTACHGP 488
Query: 542 MS*GQHITLPKL*LEWA*CSIRGFWA*KAGHKLLLRVPIISRAFENLVIYYRYPDCSS*A 721
+ +H+TLPKL*LEWA*C I W K +KLL VPII RAF+N+VI+ Y CSS*A
Sbjct: 489 LPRREHLTLPKL*LEWA*CWILRCWTQKTEYKLLFGVPIICRAFKNVVIHXGYS*CSS*A 668
Query: 722 QL*GWTKHDDN**Q 763
+L* KHD++ *Q
Sbjct: 669 EL*ASNKHDEHQ*Q 710
Score = 134 bits (287), Expect = 6e-031
Identities = 66/133 (49%), Positives = 78/133 (58%)
Frame = -1 / -2
Query: 762 CHQLSSCLVHPHSWAQLLQSGYR**MTRFSKALLMMGTLSNSLWPAFYAQKPLMLHHAHS 583
CH SSCL+ H+ AQ L Y *MT F KAL MMGT ++SL+ F Q+ + H+AHS
Sbjct: 709 CH*CSSCLLLAHNSAQELH*EYPX*MTTFLKALQMMGTPNSSLYSVFCVQQRRIQHYAHS 530
Query: 582 NHSFGKVMCCPQDIGLMQAVNHNDHKEGSFYDAETVH*LNERYGRMISTMMPHPICSRSL 403
+H+FGKV C G QAV H H EG Y AE H*LN GRM ST H I S+
Sbjct: 529 SHNFGKVRCSLLGSGPWQAVKHTGHIEGFLYGAEKEH*LNAHCGRMTSTKRLHRIGSKPW 350
Query: 402 TFVSHRNHREEP* 364
T+ H N RE P*
Sbjct: 349 TYAPHSNRREHP* 311
Score = 125 bits (268), Expect = 3e-028
Identities = 67/138 (48%), Positives = 85/138 (61%)
Frame = -2 / -3
Query: 776 LVTSLVINCHHA*SILIVGLSCYSRDIGNK*PDSRKLC**WAP*VTVYGLPFMPRSP*CC 597
+ S V + HHA +L + L Y R+I N+*P S KLC *WAP + VY L F+ S
Sbjct: 723 ITDSTVTDAHHAYYLLTIQLRSYIRNIXNE*PHS*KLCR*WAPRIAVYILSFVSSSGGSS 544
Query: 596 IMPIPITVLAK*CVVLKTSD*CRL*TTTITKKGPSMTPRQCIS*MNATVA**AQ*CRIRS 417
MPIP+T+LAK* V+ +D RL*+T +T KG M PR+ IS*M+ VA* AQ I S
Sbjct: 543 TMPIPVTILAK*GVLF*AADHGRL*STPVT*KGSCMAPRKSIS*MHIAVA*QAQRGCIGS 364
Query: 416 AVDH*PLFPTETTERNHD 363
AV+H P+ PT E HD
Sbjct: 363 AVNHGPMLPTVIAESTHD 310
>gb|BI950228.1|BI950228 HVSMEl0019K24f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0019K24f, mRNA sequence
Length = 572
Score = 239 bits (517), Expect = 1e-062
Identities = 91/118 (77%), Positives = 101/118 (85%)
Frame = +3 / +3
Query: 345 SLILSRIMVPLCGFCGKQRSMIYCRSDAASLCLSCDRSVHSANALSRRHRRTLLCDRCGL 524
+L + IM LC +CG+ RSM+YCRSDA SLCLSCDR+VHSANALSRRH RTLLCDRC
Sbjct: 219 ALSIKTIMGALCDYCGEHRSMVYCRSDAXSLCLSCDRNVHSANALSRRHTRTLLCDRCAS 398
Query: 525 QPASVRCLEDNTSLCQNCDWNGHDAASGASGHKRQAINCYSGCPSSAELSRIWSFITD 698
QPA VRCL++NTSLCQNCDWNGH A S A+GHKRQ INCYSGCPSSAELSR+WSFI D
Sbjct: 399 QPAMVRCLKENTSLCQNCDWNGHSAGSSAAGHKRQNINCYSGCPSSAELSRMWSFIXD 572
Score = 160 bits (343), Expect = 1e-038
Identities = 71/113 (62%), Positives = 79/113 (69%)
Frame = -3 / -2
Query: 697 SVINDQILESSADDGHPE*QFMACLLCPEAPDAASCPFQSQFWQSDVLSSRHRTDAGCKP 518
S +ND ILESSADDGHPE*QF+ CLLCP A D A CPFQSQFWQS+V S R RT AGC+
Sbjct: 571 SXMNDHILESSADDGHPE*QFIFCLLCPAAEDPALCPFQSQFWQSEVFSFRQRTMAGCEA 392
Query: 517 XXXXXXXXXXXRDSALAE*TLRSHDKHNDAASDLQ*IIDLCFPQKPQRGTMIL 359
R+ ALAE TLRSHDKH + ASD Q* +DLC PQ QR MI+
Sbjct: 391 HRSHRRVLVWRRERALAECTLRSHDKHKEXASDRQ*TMDLCSPQ*SQRAPMIV 233
Score = 130 bits (278), Expect = 1e-029
Identities = 60/110 (54%), Positives = 76/110 (69%)
Frame = +2 / +2
Query: 362 DHGSSLWFLWETKVNDLLQIGCGIIVLIMRP*RSFS*CTVSAS*KDPSL*SLWFTACISP 541
+HG SL LW V+ LL I C + VL+MRP +FS*C+ SA K+PS+* + FTAC P
Sbjct: 236 NHGCSLRLLWGA*VHGLLPIRCXLFVLVMRPQCAFS*CSFSAPYKNPSM*PVCFTACHGP 415
Query: 542 MS*GQHITLPKL*LEWA*CSIRGFWA*KAGHKLLLRVPIISRAFENLVIY 691
+ +H+TLPKL*LEWA*C I W K +KLL VPII RAF+N+VI+
Sbjct: 416 LPKREHLTLPKL*LEWA*CWILRCWTQKTEYKLLFGVPIICRAFKNVVIH 565
Score = 116 bits (247), Expect = 2e-025
Identities = 55/109 (50%), Positives = 65/109 (59%)
Frame = -1 / -3
Query: 690 *MTRFSKALLMMGTLSNSLWPAFYAQKPLMLHHAHSNHSFGKVMCCPQDIGLMQAVNHND 511
*MT F KAL MMGT ++SL+ F Q+ + H+AHS+H+FGKV C G QAV H
Sbjct: 564 *MTTFLKALQMMGTPNSSLYSVFCVQQRRIQHYAHSSHNFGKVRCSLLGSGPWQAVKHTG 385
Query: 510 HKEGSFYDAETVH*LNERYGRMISTMMPHPICSRSLTFVSHRNHREEP* 364
H EG Y AE H*LN GRM ST H I S+ T+ H N RE P*
Sbjct: 384 HIEGFLYGAEKEH*LNAHCGRMTSTKRXHRIGSKPWTYAPHSNRREHP* 238
Score = 106 bits (227), Expect = 1e-022
Identities = 58/112 (51%), Positives = 71/112 (63%)
Frame = -2 / -1
Query: 698 IGNK*PDSRKLC**WAP*VTVYGLPFMPRSP*CCIMPIPITVLAK*CVVLKTSD*CRL*T 519
I N+*P S KLC *WAP + VY L F+ S MPIP+T+LAK* V+ +D RL*+
Sbjct: 572 IXNE*PHS*KLCR*WAPRIAVYILSFVSSSGGSSTMPIPVTILAK*GVLF*AADHGRL*S 393
Query: 518 TTITKKGPSMTPRQCIS*MNATVA**AQ*CRIRSAVDH*PLFPTETTERNHD 363
T +T KG M PR+ IS*M+ VA* AQ I SAV+H P+ PT E HD
Sbjct: 392 TPVT*KGSCMAPRKSIS*MHIAVA*QAQRGCIGSAVNHGPMLPTVIAESTHD 237
>gb|BQ458955.1|BQ458955 HA02L20r HA Hordeum vulgare subsp. vulgare cDNA clone HA02L20
5-PRIME, mRNA sequence
Length = 591
Score = 232 bits (500), Expect = 3e-060
Identities = 90/116 (77%), Positives = 98/116 (84%)
Frame = +3 / +3
Query: 360 RIMVPLCGFCGKQRSMIYCRSDAASLCLSCDRSVHSANALSRRHRRTLLCDRCGLQPASV 539
RIM LC FCG+QR IYCRSDAASLCLSCDR+VHSAN+LSRRH RTLLCDRC QPA+V
Sbjct: 240 RIMGALCDFCGEQRPTIYCRSDAASLCLSCDRNVHSANSLSRRHMRTLLCDRCASQPAAV 419
Query: 540 RCLEDNTSLCQNCDWNGHDAASGASGHKRQAINCYSGCPSSAELSRIWSFITDIPT 707
RCLE+N SLCQNCDWNGH A S A+GH RQ INCYSGCPSS EL+RIWSF D P+
Sbjct: 420 RCLEENISLCQNCDWNGHGATSLAAGHLRQTINCYSGCPSSEELARIWSFDFDAPS 587
Score = 169 bits (363), Expect = 2e-041
Identities = 74/115 (64%), Positives = 80/115 (69%)
Frame = -3 / -3
Query: 703 GISVINDQILESSADDGHPE*QFMACLLCPEAPDAASCPFQSQFWQSDVLSSRHRTDAGC 524
G S DQIL SS+DDGHPE*QFM CL CP A D A CPFQSQFWQS++ SSRHRT AGC
Sbjct: 583 GASKSKDQILASSSDDGHPE*QFMVCLRCPAAKDVAPCPFQSQFWQSEMFSSRHRTAAGC 404
Query: 523 KPXXXXXXXXXXXRDSALAE*TLRSHDKHNDAASDLQ*IIDLCFPQKPQRGTMIL 359
+ R+ LAE TLRSHDKH DAASD Q*I+ LC PQK QR MIL
Sbjct: 403 EAQRSQRRVLICRRERELAECTLRSHDKHRDAASDRQ*IVGLCSPQKSQRAPMIL 239
Score = 144 bits (310), Expect = 4e-034
Identities = 66/118 (55%), Positives = 77/118 (65%)
Frame = -1 / -1
Query: 711 LQSGYR**MTRFSKALLMMGTLSNSLWPAFYAQKPLMLHHAHSNHSFGKVMCCPQDIGLM 532
LQ G++ TRF A LMMGT S++LW A A++P M HA SNHSFGKV C QDIGL
Sbjct: 591 LQKGHQNQRTRFLPAPLMMGTPSSNLWSALDARQPRMSRHARSNHSFGKVKCSLQDIGLP 412
Query: 531 QAVNHNDHKEGSFYDAETVH*LNERYGRMISTMMPHPICSRSLTFVSHRNHREEP*SW 358
QAV HNDHKEGS Y E +* N YGR IS H I ++ L F +NH+E P*SW
Sbjct: 411 QAVKHNDHKEGSSYVVEKGN*PNAHYGRTISIGTRHLIGNKLLAFAPRKNHKEHP*SW 238
Score = 127 bits (272), Expect = 8e-029
Identities = 68/116 (58%), Positives = 80/116 (68%)
Frame = -2 / -2
Query: 704 RDIGNK*PDSRKLC**WAP*VTVYGLPFMPRSP*CCIMPIPITVLAK*CVVLKTSD*CRL 525
R I K PDS +L **WAP V +YGLP MP S C MP+PITVLAK* V+ KTSD RL
Sbjct: 584 RGIKIKGPDSCQLL**WAPRVAIYGLP*MPGSQGCRAMPVPITVLAK*NVLFKTSDCRRL 405
Query: 524 *TTTITKKGPSMTPRQCIS*MNATVA**AQ*CRIRSAVDH*PLFPTETTERNHDPG 357
*+TTITKKGP M+ R+ IS M+ TVA *A I SA++ PL P + T+ HDPG
Sbjct: 404 *STTITKKGPHMSSRKGISRMHITVAR*A*GRGI*SAINCWPLLPAKITKSTHDPG 237
Score = 127 bits (271), Expect = 1e-028
Identities = 61/112 (54%), Positives = 74/112 (66%)
Frame = +1 / +1
Query: 358 PGSWFLSVVSVGNKGQ*STADRMRHHCAYHATVAFIQLMHCLGVIEGPFFVIVVVYSLHQ 537
PGSW L V+ G+KGQ AD+M AY ATV I+L+ L I GPFFVIVV++SL Q
Sbjct: 238 PGSWVLFVIFAGSKGQQFIADQMPRPYAYRATVMCIRLIPFLDDI*GPFFVIVVLHSLRQ 417
Query: 538 SDVLRTTHHFAKTVIXXXXXXXXXXXXIKGRP*TVTQGAHHQQSFRESGHLL 693
SDVL+ T HFAKTVI I GRP* T+GAHHQ+S++ESG L+
Sbjct: 418 SDVLKRTFHFAKTVIGTGMARHPWLPGI*GRP*IATRGAHHQRSWQESGPLI 573
Score = 125 bits (267), Expect = 4e-028
Identities = 68/117 (58%), Positives = 79/117 (67%)
Frame = +2 / +2
Query: 359 QDHGSSLWFLWETKVNDLLQIGCGIIVLIMRP*RSFS*CTVSAS*KDPSL*SLWFTACIS 538
QDHG SL FL K N+LL I C + +LI+RP* +F * S + +DPSL*SL FTAC S
Sbjct: 239 QDHGCSL*FLRGAKANNLLPIRCRVPMLIVRP*CAFG*FPFSTTYEDPSL*SLCFTACGS 418
Query: 539 PMS*GQHITLPKL*LEWA*CSIRGFWA*KAGHKLLLRVPIISRAFENLVIYYRYPDC 709
PMS* +H TLPKL*LE A I G A KA HKLLL VPII A +NLV+ + P C
Sbjct: 419 PMS*REHFTLPKL*LERAWRDILGCRASKADHKLLLGVPIIRGAGKNLVL*F*CPFC 589
>gb|BF631488.2|BF631488 HVSMEb0016C05f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0016C05f, mRNA sequence
Length = 788
Score = 168 bits (362), Expect(2) = 8e-043
Identities = 64/87 (73%), Positives = 73/87 (83%)
Frame = +3 / +1
Query: 501 LLCDRCGLQPASVRCLEDNTSLCQNCDWNGHDAASGASGHKRQAINCYSGCPSSAELSRI 680
LLCDRC QPA+VRCLE+N SLCQNCDWNGH A S A+GH RQ INCYSGCPSS EL+RI
Sbjct: 1 LLCDRCASQPAAVRCLEENISLCQNCDWNGHGATSLAAGHLRQTINCYSGCPSSEELARI 180
Query: 681 WSFITDIPTVAAEPNYEDGLSMMTIDD 761
WSF D P+ AAEPN E+G+SMM+I+D
Sbjct: 181 WSFDFDAPSAAAEPNCEEGISMMSIND 261
Score = 133 bits (285), Expect = 1e-030
Identities = 56/81 (69%), Positives = 62/81 (76%)
Frame = -3 / -1
Query: 763 LSSIVIMLSPSS*LGSAATVGISVINDQILESSADDGHPE*QFMACLLCPEAPDAASCPF 584
LS ++IML PSS GSAA G S DQIL SS+DDGHPE*QFM CL CP A D A CPF
Sbjct: 263 LSLMLIMLIPSSQFGSAAAEGASKSKDQILASSSDDGHPE*QFMVCLRCPAAKDVAPCPF 84
Query: 583 QSQFWQSDVLSSRHRTDAGCK 521
QSQFWQS++ SSRHRT AGC+
Sbjct: 83 QSQFWQSEMFSSRHRTAAGCE 21
Score = 122 bits (262), Expect = 2e-027
Identities = 54/87 (62%), Positives = 61/87 (70%)
Frame = -1 / -2
Query: 762 CHQLSSCLVHPHSWAQLLQSGYR**MTRFSKALLMMGTLSNSLWPAFYAQKPLMLHHAHS 583
CH SSCL PH+ AQ LQ G++ TRF A LMMGT S++LW A A++P M HA S
Sbjct: 262 CH*CSSCLFLPHNSAQQLQKGHQNQRTRFLPAPLMMGTPSSNLWSALDARQPRMSRHARS 83
Query: 582 NHSFGKVMCCPQDIGLMQAVNHNDHKE 502
NHSFGKV C QDIGL QAV HNDHKE
Sbjct: 82 NHSFGKVKCSLQDIGLPQAVKHNDHKE 2
Score = 108 bits (230), Expect = 5e-023
Identities = 55/92 (59%), Positives = 63/92 (68%)
Frame = -2 / -3
Query: 776 LVTSLVINCHHA*SILIVGLSCYSRDIGNK*PDSRKLC**WAP*VTVYGLPFMPRSP*CC 597
+ + VIN HHA S L + LS R I K PDS +L **WAP V +YGLP MP S C
Sbjct: 276 ITDTTVINAHHAYSFLTIRLSSCRRGIKIKGPDSCQLL**WAPRVAIYGLP*MPGSQGCR 97
Query: 596 IMPIPITVLAK*CVVLKTSD*CRL*TTTITKK 501
MP+PITVLAK* V+ KTSD RL*+TTITKK
Sbjct: 96 AMPVPITVLAK*NVLFKTSDCRRL*STTITKK 1
Score = 100 bits (214), Expect = 8e-021
Identities = 56/87 (64%), Positives = 63/87 (72%)
Frame = +2 / +3
Query: 503 SL*SLWFTACISPMS*GQHITLPKL*LEWA*CSIRGFWA*KAGHKLLLRVPIISRAFENL 682
SL*SL FTAC SPMS* +H TLPKL*LE A I G A KA HKLLL VPII A +NL
Sbjct: 3 SL*SLCFTACGSPMS*REHFTLPKL*LERAWRDILGCRASKADHKLLLGVPIIRGAGKNL 182
Query: 683 VIYYRYPDCSS*AQL*GWTKHDDN**Q 763
V+ + P CS *A+L*G KHD++**Q
Sbjct: 183 VL*F*CPFCSC*AEL*GRNKHDEH**Q 263
Score = 25.4 bits (49), Expect(2) = 8e-043
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1 / +1
Query: 763 SDVTNHHGASDDKRLLEIANT 825
S V+NH D LL+IANT
Sbjct: 262 SGVSNHCHDQQDSSLLDIANT 324
>gb|AV833264.1|AV833264 AV833264 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare shoots germination Hordeum vulgare subsp.
vulgare cDNA clone bags4i11, mRNA sequence
Length = 508
Score = 143 bits (307), Expect = 1e-033
Identities = 56/74 (75%), Positives = 60/74 (81%)
Frame = +3 / +2
Query: 540 RCLEDNTSLCQNCDWNGHDAASGASGHKRQAINCYSGCPSSAELSRIWSFITDIPTVAAE 719
RCL NTSLCQNCDWNGH A S A+GHKRQ INCYSGCPSSAELSR+WSFI DIP VA E
Sbjct: 14 RCLXXNTSLCQNCDWNGHSAGSSAAGHKRQNINCYSGCPSSAELSRMWSFILDIPNVAPE 193
Query: 720 PNYEDGLSMMTIDD 761
N E +SMM+I D
Sbjct: 194 LNCEQVISMMSISD 235
Score = 117 bits (250), Expect = 8e-026
Identities = 50/75 (66%), Positives = 56/75 (74%)
Frame = -3 / -2
Query: 763 LSSIVIMLSPSS*LGSAATVGISVINDQILESSADDGHPE*QFMACLLCPEAPDAASCPF 584
LS ++IML S S AT+GIS +ND ILESSADDGHPE*QF+ CLLCP A D A CPF
Sbjct: 237 LSLMLIMLITCSQFSSGATLGISKMNDHILESSADDGHPE*QFIFCLLCPAAEDPALCPF 58
Query: 583 QSQFWQSDVLSSRHR 539
QSQFWQS+V R R
Sbjct: 57 QSQFWQSEVFXXRQR 13
>gb|BF628377.3|BF628377 HVSMEb0003N23f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0003N23f, mRNA sequence
Length = 516
Score = 121 bits (258), Expect = 6e-027
Identities = 47/63 (74%), Positives = 53/63 (84%)
Frame = +3 / +3
Query: 345 SLILSRIMVPLCGFCGKQRSMIYCRSDAASLCLSCDRSVHSANALSRRHRRTLLCDRCGL 524
+L + IM LC +CG+ RSM+YCRSDAASLCLSCDR+VHSANALSRRH RTLLCDRC
Sbjct: 324 ALSIKTIMGALCDYCGEHRSMVYCRSDAASLCLSCDRNVHSANALSRRHTRTLLCDRCAS 503
Query: 525 QPA 533
QPA
Sbjct: 504 QPA 512
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 448,436,631
Number of Sequences: 312970
Number of extensions: 8320783
Number of successful extensions: 108590
Number of sequences better than 1.0e-020: 9
length of database: 58,378,179
effective HSP length: 52
effective length of database: 42,103,739
effective search space used: 9347030058
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)