TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 5705822.3.1
(888 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG343555.1|BG343555 HVSMEg0006G02f Hordeum vulgare pre-a... 508 e-143
gb|BE603226.3|BE603226 HVSMEh0102J20f Hordeum vulgare 5-45 ... 406 e-112
gb|BG416017.1|BG416017 HVSMEk0009H03f Hordeum vulgare testa... 319 2e-087
gb|CA018069.1|CA018069 HV07F22r HV Hordeum vulgare subsp. v... 149 5e-081
gb|BI952691.1|BI952691 HVSMEm0007G14f Hordeum vulgare green... 264 5e-070
gb|BI949337.1|BI949337 HVSMEl0013G14f Hordeum vulgare spike... 261 4e-069
gb|BU974636.1|BU974636 HB28J16r BC Hordeum vulgare subsp. v... 198 5e-050
gb|BQ464262.1|BQ464262 HF01M14T HF Hordeum vulgare subsp. v... 180 1e-044
gb|BF255585.2|BF255585 HVSMEf0007E04f Hordeum vulgare seedl... 155 4e-037
>gb|BG343555.1|BG343555 HVSMEg0006G02f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0006G02f, mRNA sequence
Length = 954
Score = 508 bits (1104), Expect = e-143
Identities = 204/238 (85%), Positives = 215/238 (90%)
Frame = +3 / +3
Query: 78 NVLDSLIPALLKDENRKFIYVEQAFFQRWWRNQNDMIKDTVKGLISSGRLELINGGMCMH 257
NVLDSL+PALL+DENRKFIYVEQAFFQRWWR Q+D+IKDTVKGL+SSGRLE INGGMCMH
Sbjct: 3 NVLDSLVPALLRDENRKFIYVEQAFFQRWWRQQSDIIKDTVKGLVSSGRLEFINGGMCMH 182
Query: 258 DEAAVHYIDMIDQTTLGHKYIKEEFGQIPRIGWQIDPFGHSAVQAYLLGAEVGFDAFYFF 437
DEA VHYIDMIDQTTLGH++IKEEFGQIPRIGWQIDPFGHSAVQAYLLGAEVGFDA YFF
Sbjct: 183 DEATVHYIDMIDQTTLGHRFIKEEFGQIPRIGWQIDPFGHSAVQAYLLGAEVGFDALYFF 362
Query: 438 RIDYQDRDTRKGTKELEVVWRGSKTLGSSADIFAGIFPKNYEPPPGDFYFEVDDNSPVVQ 617
RIDYQDRDTRKGTKELEVVWRGSKT GSSADIFAGIFPKNYEPPPGDFYFEVD SPVVQ
Sbjct: 363 RIDYQDRDTRKGTKELEVVWRGSKTFGSSADIFAGIFPKNYEPPPGDFYFEVDATSPVVQ 542
Query: 618 DDPLLFDYNVEERVNDFVAAAVAQANITRTNHIMFTMGTDFKYQYAESWFGNMDKLIH 791
DDPLLFDYNVE+RVND AAA AQAN+T TNH+MFTMG KYQYA +IH
Sbjct: 543 DDPLLFDYNVEQRVNDXXAAAQAQANVTXTNHVMFTMGNRLKYQYAGKXVQTDGTIIH 716
Score = 390 bits (845), Expect = e-108
Identities = 156/225 (69%), Positives = 189/225 (84%)
Frame = -2 / -2
Query: 752 VLVFEVCSHCKHDMICPRDICLCYSCSNKIIYSFFNIIIEKKGIILDNRGIIINFKIKIT 573
VL+FE SHCKHDM+CP +ICLC CS II+ FN++I+KKGIILDNRG I+FKIK+T
Sbjct: 677 VLIFESVSHCKHDMVCPCNICLCLRCSXXIIHPLFNVVIKKKGIILDNRGSSIDFKIKVT 498
Query: 572 RRWFIVFWKDASKDISR*AQGLGAPPYNLEFFCSFPCITVLVINPEEIESIESYFCAKKV 393
R WFI+FW+DASK+IS *A+GLGAPPYNLEFFC PC+T+LVINPE+I I+SYFC ++V
Sbjct: 497 RWWFIIFWEDASKNIS**AKGLGAPPYNLEFFCPLPCVTILVINPEKI*CIKSYFCTEEV 318
Query: 392 SLNRRVPKRINLPANPWDLAKLLLDVLVSKCSLIDHVNIVYSRLIVHAHATIY*FQPSRA 213
SLN RVPKRI LP NPW+L KLLLD V++ SLI+HVN+V+ RL+VHAH IY FQP A
Sbjct: 317 SLNCRVPKRIYLPTNPWNLTKLLLDEPVAQRSLINHVNVVHGRLVVHAHTPIYEFQPPGA 138
Query: 212 DEPLHCILDHVILVPPPSLEECLLNIDELSVLVLEKRRDERIQHV 78
DEPLH ILD+V L+PPP LE+CLL++DEL+VLV E+RR ERIQHV
Sbjct: 137 DEPLHRILDNVALLPPPPLEKCLLDVDELAVLVPEQRRHERIQHV 3
Score = 263 bits (569), Expect(2) = 3e-072
Identities = 120/188 (63%), Positives = 136/188 (72%)
Frame = -1 / -1
Query: 639 NRKEGDHPGQQGNYHQLQNKNHQEVVHSFLERCQQRYQPMSPRSWSPSIQPRVLLFLSVY 460
N+KEGDHPGQQG H+LQNK+HQ VVH+FL RCQQ+YQ MS RSWSPSIQPRVLL S+
Sbjct: 564 NQKEGDHPGQQGK*HRLQNKSHQVVVHNFLGRCQQKYQLMSQRSWSPSIQPRVLLSPSLC 385
Query: 459 HGLGNQSGRNRKHRILLLRQEGKPEPXXXXXXXXXXXSVGSGQTPP*CTCVQV*SDRSCQ 280
H LGNQSG+N H+ILLL + GKPE S+ S QTPP* TC *SD+SCQ
Sbjct: 384 HDLGNQSGKNIMHQILLLHRGGKPELQSAQTDLSANQSLESDQTPP**TCGPA*SDQSCQ 205
Query: 279 YSVQPPHRACTCHHLLIPAVQS**APSLYP*SCHSGSSTIFGRMPAQHR*TFGSRP*EAP 100
S + P RACT HL IPA +S* APS YP* C S +ST G+MPA+ R*T GSRP* AP
Sbjct: 204 CSARSPRRACTYPHL*IPAARS*RAPSPYP**CRSAASTTSGKMPARRR*TCGSRP*AAP 25
Query: 99 G*ANPARS 76
ANPARS
Sbjct: 24 ARANPARS 1
Score = 262 bits (567), Expect = 2e-069
Identities = 130/226 (57%), Positives = 140/226 (61%)
Frame = +1 / +1
Query: 76 RTCWIXXXXXXXXXXXXXXXMLSRHSSKDGGGTRMT*SRIQ*RGSSALDGWN**MVACAC 255
RTCWI SRH S+ GGG+R T SRI+*RGSSA GWN *M CAC
Sbjct: 1 RTCWIRSCRRCSGTRTASSSTSSRHFSRGGGGSRATLSRIR*RGSSAPGGWNS*MGVCAC 180
Query: 256 TMRRLYTILT*SIRLHLDTSTSRRSLARSHGLAXXXXXXXXXXXXXXXXAQK*DSMLSIS 435
T RR T LT* IRL T +SRRSL R GL QK*D M I
Sbjct: 181 TTRRPCTTLT*LIRLRWATGSSRRSLVRFQGLVGR*IRLGTLQFRLTSSVQK*DLMHYIF 360
Query: 436 SGLITKTVIHGKEQKNSRLYGGAPRPWAHRLISLLASFQKTMNHLLVIFILKLMIIPLLS 615
SGLITK V G+ QKNSRLYGGAPRP AH+LI LLAS QK MNH LV FILK M++PLLS
Sbjct: 361 SGLITKIVTQGRGQKNSRLYGGAPRPLAHQLIFLLASSQKIMNHHLVTFILKSMLLPLLS 540
Query: 616 RMIPFFSIIMLKNE*MILLLQL*HRQISRGQIISCLQWEQTSNTNT 753
RMIPFF I L N *MI LQ HRQ+ GQ +SCLQWE SN NT
Sbjct: 541 RMIPFFLITTLNNG*MIXXLQRRHRQMLXGQTMSCLQWETDSNINT 678
Score = 229 bits (495), Expect(3) = 1e-087
Identities = 101/116 (87%), Positives = 104/116 (89%)
Frame = -3 / -3
Query: 424 ASNPTSAPRR*A*TAECPNGSICQPIRGIWPNSSLMYLCPSVV*SIMSI*CTAASSCMHM 245
ASNPTSAPRR*A*TAECPNGSICQPI GI PNSSLM L PSVV*SIMS+*CT ASSCMH+
Sbjct: 349 ASNPTSAPRR*A*TAECPNGSICQPILGI*PNSSLMNLWPSVV*SIMSM*CTVASSCMHI 170
Query: 244 PPFINSSRPELMSPFTVSLIMSFWFLHHLWKNACST*MNFRFSSLRSAGMSESSTF 77
PPF+NSSRPEL SPFTVSLIMS LHHLWKNACST*MN RFSSL SAG SESSTF
Sbjct: 169 PPFMNSSRPELTSPFTVSLIMSLCCLHHLWKNACST*MNLRFSSLSSAGTSESSTF 2
Score = 179 bits (386), Expect(3) = 2e-076
Identities = 78/116 (67%), Positives = 85/116 (73%)
Frame = +2 / +2
Query: 77 ERAGFAHPGASQGREPKVHLC*AGILPKMVEEPE*HDQGYSEGAHQLWTAGINKWWHVHA 256
ERAGFA GA+QGREP+VHL AGI P++VE E H QGY EGA QL AGI+KW +VHA
Sbjct: 2 ERAGFARAGAAQGREPQVHLRRAGIFPEVVEAAERHYQGYGEGARQLRAAGIHKWGYVHA 181
Query: 257 R*GGCTLY*HDRSDYTWTQVHQGGVWPDPTDWLAD*SVWALCGSGLPSWRRSRIRC 424
R G L+*HD SDY QVHQGGVW D DWLAD SVWALC SGLP RSRI C
Sbjct: 182 RRGDRALH*HD*SDYAGPQVHQGGVWSDSKDWLADRSVWALCSSGLPPRCRSRI*C 349
Score = 106 bits (227), Expect(3) = 2e-076
Identities = 45/58 (77%), Positives = 48/58 (82%)
Frame = +2 / +2
Query: 461 YTERNKRTRGCMEGLQDLGLIG*YLCWHLSKKL*TTSW*FLF*S***FPCCPG*SPSF 634
+ E +KRTRGCMEGLQDL LI *Y CWHL KKL*TT+W* LF*S FPCCPG*SPSF
Sbjct: 386 HKEGDKRTRGCMEGLQDLWLIS*YFCWHLPKKL*TTTW*LLF*SRCYFPCCPG*SPSF 559
Score = 85.4 bits (180), Expect(3) = 1e-087
Identities = 39/52 (75%), Positives = 40/52 (76%)
Frame = -3 / -3
Query: 754 AYWYLKSVPIVNMI*FVLVIFACATAAATKSFTRSSTL*SKRRGSSWTTGEL 599
AY YL PIVNM FV V FACA AAA SFTR STL*SKRRGSSWTTGE+
Sbjct: 679 AY*YLSLFPIVNMTWFVXVTFACACAAAXXSFTRCSTL*SKRRGSSWTTGEV 524
Score = 47.8 bits (98), Expect(3) = 1e-087
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = -3 / -3
Query: 544 MPAKISADEPKVLEPLHTT 488
MPAKISADEPKVLEPLHTT
Sbjct: 469 MPAKISADEPKVLEPLHTT 413
Score = 39.1 bits (79), Expect(3) = 2e-076
Identities = 17/35 (48%), Positives = 21/35 (60%)
Frame = +2 / +2
Query: 686 TGKYHEDKSYHVYNGNRLQIPIRRELVRKYGQTNS 790
TGK + DK HVYNG + QI IRR++ NS
Sbjct: 611 TGKCYXDKPCHVYNGKQTQISIRRKVGSDRWDNNS 715
Score = 29.0 bits (57), Expect(2) = 3e-072
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = -1 / -1
Query: 753 RIGI*SLFPL*T*YDLSS*YLP 688
RI I* FPL*T*+ LS *+LP
Sbjct: 678 RIDI*VCFPL*T*HGLSX*HLP 613
>gb|BE603226.3|BE603226 HVSMEh0102J20f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0102J20f, mRNA sequence
Length = 528
Score = 406 bits (880), Expect = e-112
Identities = 160/174 (91%), Positives = 168/174 (96%)
Frame = +3 / +2
Query: 303 LGHKYIKEEFGQIPRIGWQIDPFGHSAVQAYLLGAEVGFDAFYFFRIDYQDRDTRKGTKE 482
LGH++IKEEFGQIPRIGWQIDPFGHSAVQAYLLGAEVGFDA YFFRIDYQDRDTRKGTKE
Sbjct: 5 LGHRFIKEEFGQIPRIGWQIDPFGHSAVQAYLLGAEVGFDALYFFRIDYQDRDTRKGTKE 184
Query: 483 LEVVWRGSKTLGSSADIFAGIFPKNYEPPPGDFYFEVDDNSPVVQDDPLLFDYNVEERVN 662
LEVVWRGSKT GSSADIFAGIFPKNYEPPPGDFYFEVD SPVVQDDPLLFDYNVE+RVN
Sbjct: 185 LEVVWRGSKTFGSSADIFAGIFPKNYEPPPGDFYFEVDATSPVVQDDPLLFDYNVEQRVN 364
Query: 663 DFVAAAVAQANITRTNHIMFTMGTDFKYQYAESWFGNMDKLIHYVNKDGRIHAL 824
DFVAAA+AQAN+TRTNH+MFTMGTDFKYQYAESWF MDKLIHYVNKDGR++AL
Sbjct: 365 DFVAAALAQANVTRTNHVMFTMGTDFKYQYAESWFRQMDKLIHYVNKDGRVNAL 526
Score = 318 bits (688), Expect = 3e-086
Identities = 125/174 (71%), Positives = 151/174 (86%)
Frame = -2 / -3
Query: 824 KSMDTAILVHIVN*FVHISEPTLCVLVFEVCSHCKHDMICPRDICLCYSCSNKIIYSFFN 645
+S+ TAILVHI+N*FVH+SEPT VL+FEVCSHCKHDM+CP +ICLC CSNKII+ FN
Sbjct: 526 QSIHTAILVHIMN*FVHLSEPTFRVLIFEVCSHCKHDMVCPCNICLCQRCSNKIIHPLFN 347
Query: 644 IIIEKKGIILDNRGIIINFKIKITRRWFIVFWKDASKDISR*AQGLGAPPYNLEFFCSFP 465
++I+KKGIILDNRG I+FKIK+TR WFI+FW+DASK+IS *A+GLGAPPYNLEFFC P
Sbjct: 346 VVIKKKGIILDNRGSSIDFKIKVTRWWFIIFWEDASKNIS**AKGLGAPPYNLEFFCPLP 167
Query: 464 CITVLVINPEEIESIESYFCAKKVSLNRRVPKRINLPANPWDLAKLLLDVLVSK 303
C+T+LVINPE+I I+SYFC ++VSLN RVPKRI LP NPW+L KLLLD V++
Sbjct: 166 CVTILVINPEKI*CIKSYFCTEEVSLNCRVPKRIYLPTNPWNLTKLLLDEPVAQ 5
Score = 229 bits (495), Expect = 1e-059
Identities = 110/171 (64%), Positives = 121/171 (70%)
Frame = +1 / +3
Query: 310 TSTSRRSLARSHGLAXXXXXXXXXXXXXXXXAQK*DSMLSISSGLITKTVIHGKEQKNSR 489
T +SRRSL R GL QK*D M I SGLITK V G+ QKNSR
Sbjct: 12 TGSSRRSLVRFQGLVGR*IRLGTLQFRLTSSVQK*DLMHYIFSGLITKIVTQGRGQKNSR 191
Query: 490 LYGGAPRPWAHRLISLLASFQKTMNHLLVIFILKLMIIPLLSRMIPFFSIIMLKNE*MIL 669
LYGGAPRP AH+LI LLAS QK MNH LV FILK M++PLLSRMIPFF I L N *MIL
Sbjct: 192 LYGGAPRPLAHQLIFLLASSQKIMNHHLVTFILKSMLLPLLSRMIPFFLITTLNNG*MIL 371
Query: 670 LLQL*HRQISRGQIISCLQWEQTSNTNTQRVGSEIWTN*FTM*TRMAVSML 822
LLQ HRQ+ +GQ +SCLQWEQTSN NT++VGS+ WTN*F M*TRMAV ML
Sbjct: 372 LLQRWHRQMLQGQTMSCLQWEQTSNINTRKVGSDRWTN*FIM*TRMAV*ML 524
Score = 165 bits (354), Expect(2) = 1e-055
Identities = 71/110 (64%), Positives = 81/110 (73%)
Frame = -1 / -2
Query: 639 NRKEGDHPGQQGNYHQLQNKNHQEVVHSFLERCQQRYQPMSPRSWSPSIQPRVLLFLSVY 460
N+KEGDHPGQQG H+LQNK+HQ VVH+FL RCQQ+YQ MS RSWSPSIQPRVLL S+
Sbjct: 341 NQKEGDHPGQQGK*HRLQNKSHQVVVHNFLGRCQQKYQLMSQRSWSPSIQPRVLLSPSLC 162
Query: 459 HGLGNQSGRNRKHRILLLRQEGKPEPXXXXXXXXXXXSVGSGQTPP*CTC 310
H LGNQSG+N H+ILLL + GKPE S+ S QTPP* TC
Sbjct: 161 HDLGNQSGKNIMHQILLLHRGGKPELQSAQTDLSANQSLESDQTPP**TC 12
Score = 134 bits (287), Expect(3) = 9e-059
Identities = 63/75 (84%), Positives = 67/75 (89%)
Frame = -3 / -1
Query: 823 RAWIRPSLFT**ISLSIFPNQLSAYWYLKSVPIVNMI*FVLVIFACATAAATKSFTRSST 644
RA+ RPSLFT**I+LSI NQLSAY YLKSVPIVNM FVLV FACA+AAATKSFTR ST
Sbjct: 525 RAFTRPSLFT**INLSICLNQLSAY*YLKSVPIVNMTWFVLVTFACASAAATKSFTRCST 346
Query: 643 L*SKRRGSSWTTGEL 599
L*SKRRGSSWTTGE+
Sbjct: 345 L*SKRRGSSWTTGEV 301
Score = 106 bits (227), Expect(3) = 5e-057
Identities = 45/58 (77%), Positives = 48/58 (82%)
Frame = +2 / +1
Query: 461 YTERNKRTRGCMEGLQDLGLIG*YLCWHLSKKL*TTSW*FLF*S***FPCCPG*SPSF 634
+ E +KRTRGCMEGLQDL LI *Y CWHL KKL*TT+W* LF*S FPCCPG*SPSF
Sbjct: 163 HKEGDKRTRGCMEGLQDLWLIS*YFCWHLPKKL*TTTW*LLF*SRCYFPCCPG*SPSF 336
Score = 84.0 bits (177), Expect(3) = 9e-059
Identities = 37/41 (90%), Positives = 37/41 (90%)
Frame = -3 / -1
Query: 424 ASNPTSAPRR*A*TAECPNGSICQPIRGIWPNSSLMYLCPS 302
ASNPTSAPRR*A*TAECPNGSICQPI GI PNSSLM L PS
Sbjct: 126 ASNPTSAPRR*A*TAECPNGSICQPILGI*PNSSLMNLWPS 4
Score = 80.8 bits (170), Expect(3) = 5e-057
Identities = 32/47 (68%), Positives = 37/47 (78%)
Frame = +2 / +1
Query: 686 TGKYHEDKSYHVYNGNRLQIPIRRELVRKYGQTNSLCEQGWPYPCSL 826
TGK ++DK HVYNGNRLQI IR +LV+ GQ NSLCEQGWP CS+
Sbjct: 388 TGKCYKDKPCHVYNGNRLQISIRGKLVQTDGQINSLCEQGWPCECSV 528
Score = 72.5 bits (152), Expect(3) = 5e-057
Identities = 29/38 (76%), Positives = 29/38 (76%)
Frame = +2 / +1
Query: 311 QVHQGGVWPDPTDWLAD*SVWALCGSGLPSWRRSRIRC 424
QVHQGGVW D DWLAD SVWALC SGLP RSRI C
Sbjct: 13 QVHQGGVWSDSKDWLADRSVWALCSSGLPPRCRSRI*C 126
Score = 72.1 bits (151), Expect(2) = 1e-055
Identities = 31/45 (68%), Positives = 36/45 (80%)
Frame = -1 / -2
Query: 822 EHGYGHPCSHSELVCPYFRTNSLRIGI*SLFPL*T*YDLSS*YLP 688
EH +GHPCSH+EL+CP TN RI I*SLFPL*T*+ LS *+LP
Sbjct: 524 EHSHGHPCSHNELICPSV*TNFPRIDI*SLFPL*T*HGLSL*HLP 390
Score = 47.8 bits (98), Expect(3) = 9e-059
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = -3 / -1
Query: 544 MPAKISADEPKVLEPLHTT 488
MPAKISADEPKVLEPLHTT
Sbjct: 246 MPAKISADEPKVLEPLHTT 190
>gb|BG416017.1|BG416017 HVSMEk0009H03f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0009H03f, mRNA sequence
Length = 955
Score = 319 bits (691), Expect(2) = 2e-087
Identities = 126/150 (84%), Positives = 136/150 (90%)
Frame = +3 / +1
Query: 3 DVGWLKTVDQYYVGSNNSIQGACVQNVLDSLIPALLKDENRKFIYVEQAFFQRWWRNQND 182
DVGWLKTVDQYYVGSNNSIQGACVQNVLDSL+PALLKD NRKFIYVEQAFF RWWR ND
Sbjct: 109 DVGWLKTVDQYYVGSNNSIQGACVQNVLDSLVPALLKD*NRKFIYVEQAFFHRWWRQHND 288
Query: 183 MIKDTVKGLISSGRLELINGGMCMHDEAAVHYIDMIDQTTLGHKYIKEEFGQIPRIGWQI 362
+IKDTVKGL++S RLE INGGMCMHD+A VHYIDMID TTLGH++IKEEFGQIP+IGWQI
Sbjct: 289 IIKDTVKGLVNSRRLEFINGGMCMHDQATVHYIDMIDHTTLGHRFIKEEFGQIPKIGWQI 468
Query: 363 DPFGHSAVQAYLLGAEVGFDAFYFFRIDYQ 452
+PFGH A+QA LLGAEVG AF FF IDYQ
Sbjct: 469 NPFGHFAIQALLLGAEVGIGAFNFFPIDYQ 558
Score = 253 bits (547), Expect(3) = 1e-071
Identities = 112/138 (81%), Positives = 116/138 (84%)
Frame = -3 / -3
Query: 415 PTSAPRR*A*TAECPNGSICQPIRGIWPNSSLMYLCPSVV*SIMSI*CTAASSCMHMPPF 236
PTSAPR A A+CPNG ICQPI GI PNSSLM L PSVV*SIMS+*CT A SCMH+PPF
Sbjct: 521 PTSAPRSKACIAKCPNGFICQPIFGI*PNSSLMNLWPSVV*SIMSM*CTVAWSCMHIPPF 342
Query: 235 INSSRPELMSPFTVSLIMSFWFLHHLWKNACST*MNFRFSSLRSAGMSESSTFCTHAPWM 56
+NSSR EL SPFTVSLIMS LHHLWKNACST*MN RF SL SAG SESSTF THAPWM
Sbjct: 341 MNSSRRELTSPFTVSLIMSLCCLHHLWKNACST*MNLRF*SLSSAGTSESSTF*THAPWM 162
Query: 55 ELLDPT*YWSTVLSHPTS 2
ELLDPT*YWSTVLS PTS
Sbjct: 161 ELLDPT*YWSTVLSQPTS 108
Score = 215 bits (465), Expect = 2e-055
Identities = 91/138 (65%), Positives = 104/138 (75%)
Frame = +2 / +3
Query: 2 RRRMAQDRRPVLRRIQQLHPGGMRAERAGFAHPGASQGREPKVHLC*AGILPKMVEEPE* 181
RRR+AQDRRPVLRRIQQLHPG +R+ERAGFA GA+QG EP+VHL AGI P++VE +
Sbjct: 108 RRRLAQDRRPVLRRIQQLHPGRVRSERAGFARAGAAQGLEPQVHLRRAGIFPQVVEATQR 287
Query: 182 HDQGYSEGAHQLWTAGINKWWHVHAR*GGCTLY*HDRSDYTWTQVHQGGVWPDPTDWLAD 361
H QGY EGA QL AGI+KW +VHAR G L+*HD S Y QVHQGGVW D DWLA+
Sbjct: 288 HYQGYGEGARQLPAAGIHKWGYVHARPGDRALH*HD*SHYAGPQVHQGGVWSDSKDWLAN 467
Query: 362 *SVWALCGSGLPSWRRSR 415
SVWALC + SW RSR
Sbjct: 468 KSVWALCNTSFTSWSRSR 521
Score = 191 bits (412), Expect = 4e-048
Identities = 80/128 (62%), Positives = 104/128 (81%)
Frame = -2 / -2
Query: 452 LVINPEEIESIESYFCAKKVSLNRRVPKRINLPANPWDLAKLLLDVLVSKCSLIDHVNIV 273
LVI+ E+I+ SYFC+KK SL +VPKRI LP N W+L KLLLD V++ S+I+HVN+V
Sbjct: 558 LVIDREKIKGSNSYFCSKK*SLYCKVPKRIYLPTNLWNLTKLLLDEPVAQRSVINHVNVV 379
Query: 272 YSRLIVHAHATIY*FQPSRADEPLHCILDHVILVPPPSLEECLLNIDELSVLVLEKRRDE 93
+ RL+VHAH IY FQP DEPLH ILD+V+++PPP +E+CLL++DEL+VLVLE+RR E
Sbjct: 378 HGRLVVHAHTPIYEFQPPGVDEPLHRILDNVVVLPPPPVEKCLLDVDELAVLVLEQRRHE 199
Query: 92 RIQHVLHA 69
RIQHVL+A
Sbjct: 198 RIQHVLNA 175
Score = 155 bits (332), Expect = 4e-037
Identities = 74/113 (65%), Positives = 79/113 (69%)
Frame = -1 / -1
Query: 339 SGQTPP*CTCVQV*SDRSCQYSVQPPHRACTCHHLLIPAVQS**APSLYP*SCHSGSSTI 160
S QTPP* TC * D+SCQ S + P RACT HL IPA S* APS YP* C +ST
Sbjct: 445 SDQTPP**TCGPA*CDQSCQCSARSPGRACTYPHL*IPAAGS*RAPSPYP**CRCVASTT 266
Query: 159 FGRMPAQHR*TFGSRP*EAPG*ANPARSARMPPGWSCWIRRSTGLRS*AIRRR 1
G+MPA+ R*T GS P* AP ANPARS R PGWSCWIRRSTG RS*A RRR
Sbjct: 265 CGKMPARRR*TCGSSP*AAPARANPARSERTRPGWSCWIRRSTGRRS*ASRRR 107
Score = 28.1 bits (55), Expect(3) = 1e-071
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -1 / -1
Query: 456 GLGNQSGRNRKHRILLLRQEGK 391
G GN+SG+N + + LLL QE K
Sbjct: 562 GFGNRSGKN*RLQFLLLLQEVK 497
Score = 27.6 bits (54), Expect(3) = 1e-071
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -1 / -2
Query: 630 EGDHPGQQGNYHQLQNKN 577
+G HPGQQG + Q Q N
Sbjct: 729 KGIHPGQQGKWQQTQK*N 676
Score = 24.0 bits (46), Expect(2) = 2e-087
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +3 / +2
Query: 549 PKNYEPPPGDFYF 587
PK + PPP FYF
Sbjct: 647 PKKF*PPPYRFYF 685
>gb|CA018069.1|CA018069 HV07F22r HV Hordeum vulgare subsp. vulgare cDNA clone HV07F22
5-PRIME, mRNA sequence
Length = 497
Score = 149 bits (320), Expect(3) = 5e-081
Identities = 58/69 (84%), Positives = 61/69 (88%)
Frame = +3 / +2
Query: 231 LINGGMCMHDEAAVHYIDMIDQTTLGHKYIKEEFGQIPRIGWQIDPFGHSAVQAYLLGAE 410
+INGGMCMHDEA VHY MIDQTTLGH++IKEEFGQIPRIGWQ PFGHSAVQAYLLGAE
Sbjct: 26 IINGGMCMHDEATVHYXXMIDQTTLGHRFIKEEFGQIPRIGWQXXPFGHSAVQAYLLGAE 205
Query: 411 VGFDAFYFF 437
VGFDA F
Sbjct: 206 VGFDALXXF 232
Score = 126 bits (270), Expect(4) = 1e-067
Identities = 55/64 (85%), Positives = 57/64 (89%)
Frame = -3 / -3
Query: 424 ASNPTSAPRR*A*TAECPNGSICQPIRGIWPNSSLMYLCPSVV*SIMSI*CTAASSCMHM 245
ASNPTSAPRR*A*TAECPNG ICQPI GI PNSSLM L PSVV*SIM +*CT ASSCMH+
Sbjct: 219 ASNPTSAPRR*A*TAECPNGXICQPILGI*PNSSLMNLWPSVV*SIMXM*CTVASSCMHI 40
Query: 244 PPFI 233
PPFI
Sbjct: 39 PPFI 28
Score = 106 bits (226), Expect(3) = 5e-081
Identities = 43/48 (89%), Positives = 44/48 (91%)
Frame = +3 / +3
Query: 426 FYFFRIDYQDRDTRKGTKELEVVWRGSKTLGSSADIFAGIFPKNYEPP 569
+ FRIDYQDRDTRKGTKELEVV RGSKT GSSADIFAGIFPKNYEPP
Sbjct: 222 YXLFRIDYQDRDTRKGTKELEVVXRGSKTFGSSADIFAGIFPKNYEPP 365
Score = 100 bits (213), Expect(3) = 9e-050
Identities = 42/63 (66%), Positives = 44/63 (69%)
Frame = +2 / +1
Query: 236 KWWHVHAR*GGCTLY*HDRSDYTWTQVHQGGVWPDPTDWLAD*SVWALCGSGLPSWRRSR 415
KW +VHAR G L+ HD SDY QVHQGGVW D DWLAD SVWALC SGLP RSR
Sbjct: 31 KWGYVHARRGDRALHXHD*SDYAGPQVHQGGVWSDSKDWLADXSVWALCSSGLPPRCRSR 210
Query: 416 IRC 424
I C
Sbjct: 211 I*C 219
Score = 100 bits (212), Expect(3) = 5e-042
Identities = 40/63 (63%), Positives = 50/63 (79%)
Frame = -2 / -2
Query: 422 IESYFCAKKVSLNRRVPKRINLPANPWDLAKLLLDVLVSKCSLIDHVNIVYSRLIVHAHA 243
I+SYFC ++VSLN RVPKR LP NPW+L KLLLD V++ SLI+HV +V+ RL+VHAH
Sbjct: 217 IKSYFCTEEVSLNCRVPKRXXLPTNPWNLTKLLLDEPVAQRSLINHVXVVHGRLVVHAHT 38
Query: 242 TIY 234
IY
Sbjct: 37 PIY 29
Score = 93.2 bits (197), Expect(4) = 1e-067
Identities = 34/45 (75%), Positives = 41/45 (91%)
Frame = -2 / -1
Query: 566 WFIVFWKDASKDISR*AQGLGAPPYNLEFFCSFPCITVLVINPEE 432
WFI+FW+DASK+IS *A+GLGAP YNLEFFC PC+T+LVINPE+
Sbjct: 362 WFIIFWEDASKNIS**AKGLGAPXYNLEFFCPLPCVTILVINPEK 228
Score = 84.9 bits (179), Expect(3) = 5e-081
Identities = 34/41 (82%), Positives = 37/41 (90%)
Frame = +3 / +1
Query: 576 DFYFEVDDNSPVVQDDPLLFDYNVEERVNDFVAAAVAQANI 698
DFYFEVD SPVVQDDPLLFDY E+RVNDFVAAA+AQAN+
Sbjct: 373 DFYFEVDATSPVVQDDPLLFDYXXEQRVNDFVAAALAQANV 495
Score = 81.7 bits (172), Expect(2) = 1e-028
Identities = 37/68 (54%), Positives = 46/68 (67%)
Frame = -1 / -3
Query: 636 RKEGDHPGQQGNYHQLQNKNHQEVVHSFLERCQQRYQPMSPRSWSPSIQPRVLLFLSVYH 457
+K+G +G+ + K VVH+FL RCQQ+YQ MS RSWSP IQPRVLL S+ H
Sbjct: 432 KKKGIILDNRGSSIDFKIKVTXVVVHNFLGRCQQKYQLMSQRSWSPXIQPRVLLSPSLCH 253
Query: 456 GLGNQSGR 433
LGNQSG+
Sbjct: 252 DLGNQSGK 229
Score = 75.8 bits (159), Expect(3) = 9e-050
Identities = 33/44 (75%), Positives = 35/44 (79%)
Frame = +1 / +1
Query: 436 SGLITKTVIHGKEQKNSRLYGGAPRPWAHRLISLLASFQKTMNH 567
SGLITK V G+ QKNSRLY GAPRP AH+LI LLAS QK MNH
Sbjct: 232 SGLITKIVTQGRGQKNSRLYXGAPRPLAHQLIFLLASSQKIMNH 363
Score = 71.6 bits (150), Expect(4) = 1e-067
Identities = 28/42 (66%), Positives = 34/42 (80%)
Frame = -2 / -3
Query: 698 DICLCYSCSNKIIYSFFNIIIEKKGIILDNRGIIINFKIKIT 573
+ICLC CSNKII+ F +I+KKGIILDNRG I+FKIK+T
Sbjct: 495 NICLCQRCSNKIIHPLFXXVIKKKGIILDNRGSSIDFKIKVT 370
Score = 66.1 bits (138), Expect(3) = 5e-042
Identities = 28/34 (82%), Positives = 30/34 (88%)
Frame = -3 / -1
Query: 700 VIFACATAAATKSFTRSSTL*SKRRGSSWTTGEL 599
V FACA+AAATKSFTR S *SKRRGSSWTTGE+
Sbjct: 497 VTFACASAAATKSFTRCSXX*SKRRGSSWTTGEV 396
Score = 64.8 bits (135), Expect(2) = 1e-028
Identities = 32/63 (50%), Positives = 37/63 (58%)
Frame = -1 / -1
Query: 423 HRILLLRQEGKPEPXXXXXXXXXXXSVGSGQTPP*CTCVQV*SDRSCQYSVQPPHRACTC 244
H+ILLL + GKPE S+ S QTPP* TC *SD+SC S + P RACT
Sbjct: 218 HQILLLHRGGKPELQSAQTDXSANQSLESDQTPP**TCGPA*SDQSCXCSARSPRRACTY 39
Query: 243 HHL 235
HL
Sbjct: 38 PHL 30
Score = 64.3 bits (134), Expect(3) = 1e-023
Identities = 26/37 (70%), Positives = 29/37 (78%)
Frame = +2 / +2
Query: 461 YTERNKRTRGCMEGLQDLGLIG*YLCWHLSKKL*TTS 571
+ E +KRTRGC GLQDL LI *Y CWHL KKL*TT+
Sbjct: 257 HKEGDKRTRGCXXGLQDLWLIS*YFCWHLPKKL*TTT 367
Score = 59.7 bits (124), Expect(3) = 9e-050
Identities = 28/41 (68%), Positives = 31/41 (75%)
Frame = +1 / +2
Query: 574 VIFILKLMIIPLLSRMIPFFSIIMLKNE*MILLLQL*HRQI 696
V FILK M++PLLSRMIPFF I N *MILLLQ HRQ+
Sbjct: 371 VTFILKSMLLPLLSRMIPFFLITXXNNG*MILLLQRWHRQM 493
Score = 48.3 bits (99), Expect(3) = 1e-023
Identities = 29/63 (46%), Positives = 30/63 (47%)
Frame = +1 / +3
Query: 235 *MVACACTMRRLYTILT*SIRLHLDTSTSRRSLARSHGLAXXXXXXXXXXXXXXXXAQK* 414
*M CACT RR T T* IRL T +SRRSL R GL QK*
Sbjct: 30 *MGVCACTTRRPCTTXT*LIRLRWATGSSRRSLVRFQGLVGRXIRLGTLQFRLTSSVQK* 209
Query: 415 DSM 423
D M
Sbjct: 210 DLM 218
Score = 43.7 bits (89), Expect(3) = 5e-042
Identities = 18/19 (94%), Positives = 18/19 (94%)
Frame = -3 / -2
Query: 544 MPAKISADEPKVLEPLHTT 488
MPAKISADEPKVLEPL TT
Sbjct: 340 MPAKISADEPKVLEPLXTT 284
Score = 35.0 bits (70), Expect(3) = 1e-023
Identities = 16/20 (80%), Positives = 16/20 (80%)
Frame = +2 / +3
Query: 575 *FLF*S***FPCCPG*SPSF 634
* LF*S FPCCPG*SPSF
Sbjct: 372 *LLF*SRCYFPCCPG*SPSF 431
Score = 23.1 bits (44), Expect(4) = 1e-067
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -3 / -2
Query: 241 PFINSSRPELMS 206
P NSSRPEL S
Sbjct: 37 PIYNSSRPELTS 2
>gb|BI952691.1|BI952691 HVSMEm0007G14f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0007G14f, mRNA sequence
Length = 430
Score = 264 bits (571), Expect = 5e-070
Identities = 103/118 (87%), Positives = 112/118 (94%)
Frame = +3 / +1
Query: 534 FAGIFPKNYEPPPGDFYFEVDDNSPVVQDDPLLFDYNVEERVNDFVAAAVAQANITRTNH 713
FAGIFPKNYEPPPGDFYFEVD SPVVQDDPLLFDYNVE+RVNDFVAAA+AQAN+TRTNH
Sbjct: 1 FAGIFPKNYEPPPGDFYFEVDATSPVVQDDPLLFDYNVEQRVNDFVAAALAQANVTRTNH 180
Query: 714 IMFTMGTDFKYQYAESWFGNMDKLIHYVNKDGRIHALYSTPSIYTDAKYAANEQGPLQ 887
+MFTMGTDFKYQYAESWF MDKLIHYVNKDGR++ALYSTPSIYTDAK++ANE PL+
Sbjct: 181 VMFTMGTDFKYQYAESWFRQMDKLIHYVNKDGRVNALYSTPSIYTDAKFSANEPWPLK 354
Score = 226 bits (487), Expect = 2e-058
Identities = 85/118 (72%), Positives = 103/118 (87%)
Frame = -2 / -2
Query: 887 LERPLLICSIFCIGINGRCGIKSMDTAILVHIVN*FVHISEPTLCVLVFEVCSHCKHDMI 708
L+RP LIC FCIG+NGRC ++S+ TAILVHI+N*FVH+SEPT VL+FEVCSHCKHDM+
Sbjct: 354 LKRPWLICRKFCIGVNGRCRVQSIHTAILVHIMN*FVHLSEPTFRVLIFEVCSHCKHDMV 175
Query: 707 CPRDICLCYSCSNKIIYSFFNIIIEKKGIILDNRGIIINFKIKITRRWFIVFWKDASK 534
CP +ICLC CSNKII+ FN++I+KKGIILDNRG I+FKIK+TR WFI+FW+DASK
Sbjct: 174 CPCNICLCQRCSNKIIHPLFNVVIKKKGIILDNRGSSIDFKIKVTRWWFIIFWEDASK 1
Score = 186 bits (400), Expect = 2e-046
Identities = 85/118 (72%), Positives = 93/118 (78%)
Frame = +1 / +2
Query: 535 LLASFQKTMNHLLVIFILKLMIIPLLSRMIPFFSIIMLKNE*MILLLQL*HRQISRGQII 714
LLAS QK MNH LV FILK M++PLLSRMIPFF I L N *MILLLQ HRQ+ +GQ +
Sbjct: 2 LLASSQKIMNHHLVTFILKSMLLPLLSRMIPFFLITTLNNG*MILLLQRWHRQMLQGQTM 181
Query: 715 SCLQWEQTSNTNTQRVGSEIWTN*FTM*TRMAVSMLFIPHLPFIPMQNMLQMSRGLSR 888
SCLQWEQTSN NT++VGS+ WTN*F M*TRMAV ML HLPF PMQN LQMS GL R
Sbjct: 182 SCLQWEQTSNINTRKVGSDRWTN*FIM*TRMAV*MLCTLHLPFTPMQNFLQMSHGLLR 355
Score = 160 bits (344), Expect = 1e-038
Identities = 78/95 (82%), Positives = 82/95 (86%)
Frame = -3 / -3
Query: 883 RGPCSFAAYFASV*MEGVE*RAWIRPSLFT**ISLSIFPNQLSAYWYLKSVPIVNMI*FV 704
RG SFA FASV*MEGVE RA+ RPSLFT**I+LSI NQLSAY YLKSVPIVNM FV
Sbjct: 350 RGHGSFAENFASV*MEGVEYRAFTRPSLFT**INLSICLNQLSAY*YLKSVPIVNMTWFV 171
Query: 703 LVIFACATAAATKSFTRSSTL*SKRRGSSWTTGEL 599
LV FACA+AAATKSFTR STL*SKRRGSSWTTGE+
Sbjct: 170 LVTFACASAAATKSFTRCSTL*SKRRGSSWTTGEV 66
Score = 113 bits (242), Expect(2) = 1e-038
Identities = 46/66 (69%), Positives = 53/66 (80%)
Frame = +2 / +3
Query: 686 TGKYHEDKSYHVYNGNRLQIPIRRELVRKYGQTNSLCEQGWPYPCSLFHTFHLYRCKICC 865
TGK ++DK HVYNGNRLQI IR +LV+ GQ NSLCEQGWP CS+ +TFHL+RCKI C
Sbjct: 153 TGKCYKDKPCHVYNGNRLQISIRGKLVQTDGQINSLCEQGWPCECSVLYTFHLHRCKIFC 332
Query: 866 K*AGAS 883
K*A AS
Sbjct: 333 K*AMAS 350
Score = 102 bits (218), Expect(2) = 3e-037
Identities = 45/65 (69%), Positives = 51/65 (78%)
Frame = -1 / -1
Query: 882 EAPAHLQHILHRYKWKVWNKEHGYGHPCSHSELVCPYFRTNSLRIGI*SLFPL*T*YDLS 703
EA AHLQ ILHR KWKV + EH +GHPCSH+EL+CP TN RI I*SLFPL*T*+ LS
Sbjct: 349 EAMAHLQKILHRCKWKV*STEHSHGHPCSHNELICPSV*TNFPRIDI*SLFPL*T*HGLS 170
Query: 702 S*YLP 688
*+LP
Sbjct: 169 L*HLP 155
Score = 72.5 bits (152), Expect(2) = 3e-037
Identities = 27/35 (77%), Positives = 31/35 (88%)
Frame = -1 / -1
Query: 639 NRKEGDHPGQQGNYHQLQNKNHQEVVHSFLERCQQ 535
N+KEGDHPGQQG H+LQNK+HQ VVH+FL RCQQ
Sbjct: 106 NQKEGDHPGQQGK*HRLQNKSHQVVVHNFLGRCQQ 2
Score = 66.1 bits (138), Expect(2) = 1e-038
Identities = 27/33 (81%), Positives = 28/33 (84%)
Frame = +2 / +3
Query: 536 CWHLSKKL*TTSW*FLF*S***FPCCPG*SPSF 634
CWHL KKL*TT+W* LF*S FPCCPG*SPSF
Sbjct: 3 CWHLPKKL*TTTW*LLF*SRCYFPCCPG*SPSF 101
>gb|BI949337.1|BI949337 HVSMEl0013G14f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0013G14f, mRNA sequence
Length = 507
Score = 261 bits (564), Expect = 4e-069
Identities = 102/118 (86%), Positives = 112/118 (94%)
Frame = +3 / +1
Query: 534 FAGIFPKNYEPPPGDFYFEVDDNSPVVQDDPLLFDYNVEERVNDFVAAAVAQANITRTNH 713
FAGIFPKNYEPPPGDFYFEVD SPVVQDDPLLFD+NVE+RVNDFVAAA+AQAN+TRTNH
Sbjct: 1 FAGIFPKNYEPPPGDFYFEVDAASPVVQDDPLLFDHNVEQRVNDFVAAALAQANVTRTNH 180
Query: 714 IMFTMGTDFKYQYAESWFGNMDKLIHYVNKDGRIHALYSTPSIYTDAKYAANEQGPLQ 887
+MFTMGTDFKYQYAESWF MDKLIHYVNKDGR++ALYSTPSIYTDAK++ANE PL+
Sbjct: 181 VMFTMGTDFKYQYAESWFRQMDKLIHYVNKDGRVNALYSTPSIYTDAKFSANEPWPLK 354
Score = 226 bits (487), Expect = 2e-058
Identities = 85/118 (72%), Positives = 103/118 (87%)
Frame = -2 / -1
Query: 887 LERPLLICSIFCIGINGRCGIKSMDTAILVHIVN*FVHISEPTLCVLVFEVCSHCKHDMI 708
L+RP LIC FCIG+NGRC ++S+ TAILVHI+N*FVH+SEPT VL+FEVCSHCKHDM+
Sbjct: 354 LKRPWLICRKFCIGVNGRCRVQSIHTAILVHIMN*FVHLSEPTFRVLIFEVCSHCKHDMV 175
Query: 707 CPRDICLCYSCSNKIIYSFFNIIIEKKGIILDNRGIIINFKIKITRRWFIVFWKDASK 534
CP +ICLC CSNKII+ FN++I+KKGIILDNRG I+FKIK+TR WFI+FW+DASK
Sbjct: 174 CPCNICLCQRCSNKIIHPLFNVVIKKKGIILDNRGSSIDFKIKVTRWWFIIFWEDASK 1
Score = 186 bits (400), Expect = 2e-046
Identities = 85/118 (72%), Positives = 93/118 (78%)
Frame = +1 / +2
Query: 535 LLASFQKTMNHLLVIFILKLMIIPLLSRMIPFFSIIMLKNE*MILLLQL*HRQISRGQII 714
LLAS QK MNH LV FILK M++PLLSRMIPFF I L N *MILLLQ HRQ+ +GQ +
Sbjct: 2 LLASSQKIMNHHLVTFILKSMLLPLLSRMIPFFLITTLNNG*MILLLQRWHRQMLQGQTM 181
Query: 715 SCLQWEQTSNTNTQRVGSEIWTN*FTM*TRMAVSMLFIPHLPFIPMQNMLQMSRGLSR 888
SCLQWEQTSN NT++VGS+ WTN*F M*TRMAV ML HLPF PMQN LQMS GL R
Sbjct: 182 SCLQWEQTSNINTRKVGSDRWTN*FIM*TRMAV*MLCTLHLPFTPMQNFLQMSHGLLR 355
Score = 160 bits (343), Expect = 1e-038
Identities = 78/94 (82%), Positives = 81/94 (86%)
Frame = -3 / -2
Query: 883 RGPCSFAAYFASV*MEGVE*RAWIRPSLFT**ISLSIFPNQLSAYWYLKSVPIVNMI*FV 704
RG SFA FASV*MEGVE RA+ RPSLFT**I+LSI NQLSAY YLKSVPIVNM FV
Sbjct: 350 RGHGSFAENFASV*MEGVEYRAFTRPSLFT**INLSICLNQLSAY*YLKSVPIVNMTWFV 171
Query: 703 LVIFACATAAATKSFTRSSTL*SKRRGSSWTTGE 602
LV FACA+AAATKSFTR STL*SKRRGSSWTTGE
Sbjct: 170 LVTFACASAAATKSFTRCSTL*SKRRGSSWTTGE 69
Score = 113 bits (242), Expect(2) = 1e-038
Identities = 46/66 (69%), Positives = 53/66 (80%)
Frame = +2 / +3
Query: 686 TGKYHEDKSYHVYNGNRLQIPIRRELVRKYGQTNSLCEQGWPYPCSLFHTFHLYRCKICC 865
TGK ++DK HVYNGNRLQI IR +LV+ GQ NSLCEQGWP CS+ +TFHL+RCKI C
Sbjct: 153 TGKCYKDKPCHVYNGNRLQISIRGKLVQTDGQINSLCEQGWPCECSVLYTFHLHRCKIFC 332
Query: 866 K*AGAS 883
K*A AS
Sbjct: 333 K*AMAS 350
Score = 102 bits (218), Expect(2) = 7e-037
Identities = 45/65 (69%), Positives = 51/65 (78%)
Frame = -1 / -3
Query: 882 EAPAHLQHILHRYKWKVWNKEHGYGHPCSHSELVCPYFRTNSLRIGI*SLFPL*T*YDLS 703
EA AHLQ ILHR KWKV + EH +GHPCSH+EL+CP TN RI I*SLFPL*T*+ LS
Sbjct: 349 EAMAHLQKILHRCKWKV*STEHSHGHPCSHNELICPSV*TNFPRIDI*SLFPL*T*HGLS 170
Query: 702 S*YLP 688
*+LP
Sbjct: 169 L*HLP 155
Score = 71.6 bits (150), Expect(2) = 7e-037
Identities = 26/35 (74%), Positives = 31/35 (88%)
Frame = -1 / -3
Query: 639 NRKEGDHPGQQGNYHQLQNKNHQEVVHSFLERCQQ 535
++KEGDHPGQQG H+LQNK+HQ VVH+FL RCQQ
Sbjct: 106 DQKEGDHPGQQGKQHRLQNKSHQVVVHNFLGRCQQ 2
Score = 66.1 bits (138), Expect(2) = 1e-038
Identities = 27/33 (81%), Positives = 28/33 (84%)
Frame = +2 / +3
Query: 536 CWHLSKKL*TTSW*FLF*S***FPCCPG*SPSF 634
CWHL KKL*TT+W* LF*S FPCCPG*SPSF
Sbjct: 3 CWHLPKKL*TTTW*LLF*SRCCFPCCPG*SPSF 101
>gb|BU974636.1|BU974636 HB28J16r BC Hordeum vulgare subsp. vulgare cDNA clone HB28J16
5-PRIME, mRNA sequence
Length = 370
Score = 198 bits (426), Expect = 5e-050
Identities = 78/101 (77%), Positives = 89/101 (88%)
Frame = +3 / +2
Query: 567 PPGDFYFEVDDNSPVVQDDPLLFDYNVEERVNDFVAAAVAQANITRTNHIMFTMGTDFKY 746
PP F FEV ++ VQDDPLLFD NVE+RVNDFV+AA+ QAN+TRTNHIM+TMG DF Y
Sbjct: 68 PPDGFSFEVLNDMTPVQDDPLLFDTNVEQRVNDFVSAAIVQANVTRTNHIMWTMGDDFNY 247
Query: 747 QYAESWFGNMDKLIHYVNKDGRIHALYSTPSIYTDAKYAAN 869
QYAESWF NMD+LIHYVNKDGR+HALYSTPSIYTDAK+A+N
Sbjct: 248 QYAESWFRNMDRLIHYVNKDGRVHALYSTPSIYTDAKHASN 370
Score = 104 bits (222), Expect = 7e-022
Identities = 57/86 (66%), Positives = 62/86 (72%)
Frame = -3 / -2
Query: 868 FAAYFASV*MEGVE*RAWIRPSLFT**ISLSIFPNQLSAYWYLKSVPIVNMI*FVLVIFA 689
F A FASV*M+GVE A RPSLFT* ISLSIF NQ SAY LKS P+V+++*FV V FA
Sbjct: 369 FDACFASV*MDGVEYSACTRPSLFT*WISLSIFRNQDSAY**LKSSPMVHIM*FVRVTFA 190
Query: 688 CATAAATKSFTRSSTL*SKRRGSSWT 611
C AA TKS TR STL S GSS T
Sbjct: 189 CTMAAETKSLTRCSTLVSNSNGSS*T 112
Score = 102 bits (217), Expect = 3e-021
Identities = 38/94 (40%), Positives = 64/94 (68%)
Frame = -2 / -1
Query: 860 IFCIGINGRCGIKSMDTAILVHIVN*FVHISEPTLCVLVFEVCSHCKHDMICPRDICLCY 681
+FCI +NG I+ M ++ILVH+++ +HI EP +L+ ++ +H H +IC R++CL Y
Sbjct: 361 MFCISVNGWSRIQCMHSSILVHVMDKSIHIPEPGFSILIIKIIAHGPHYVICTRNVCLYY 182
Query: 680 SCSNKIIYSFFNIIIEKKGIILDNRGIIINFKIK 579
C NKII + FNI ++++ ++L+ +I NFK K
Sbjct: 181 GCRNKIINALFNIGVKQQRVVLNRCHVIQNFKTK 80
>gb|BQ464262.1|BQ464262 HF01M14T HF Hordeum vulgare subsp. vulgare cDNA clone HF01M14
5-PRIME, mRNA sequence
Length = 591
Score = 180 bits (387), Expect = 1e-044
Identities = 70/83 (84%), Positives = 79/83 (95%)
Frame = +3 / +3
Query: 639 YNVEERVNDFVAAAVAQANITRTNHIMFTMGTDFKYQYAESWFGNMDKLIHYVNKDGRIH 818
YNVE+RVNDFVAAA+AQAN+TRTNH+MFTMGTDFKYQYAESWF MDKLIHYVNKDGR++
Sbjct: 3 YNVEQRVNDFVAAALAQANVTRTNHVMFTMGTDFKYQYAESWFRQMDKLIHYVNKDGRVN 182
Query: 819 ALYSTPSIYTDAKYAANEQGPLQ 887
ALYSTPSIYTDAK++ANE PL+
Sbjct: 183 ALYSTPSIYTDAKFSANEPWPLK 251
Score = 158 bits (339), Expect = 5e-038
Identities = 58/83 (69%), Positives = 71/83 (85%)
Frame = -2 / -2
Query: 887 LERPLLICSIFCIGINGRCGIKSMDTAILVHIVN*FVHISEPTLCVLVFEVCSHCKHDMI 708
L+RP LIC FCIG+NGRC ++S+ TAILVHI+N*FVH+SEPT VL+FEVCSHCKHDM+
Sbjct: 251 LKRPWLICRKFCIGVNGRCRVQSIHTAILVHIMN*FVHLSEPTFRVLIFEVCSHCKHDMV 72
Query: 707 CPRDICLCYSCSNKIIYSFFNII 639
CP +ICLC CSNKII+ FN++
Sbjct: 71 CPCNICLCQRCSNKIIHPLFNVV 3
Score = 130 bits (278), Expect = 1e-029
Identities = 66/82 (80%), Positives = 69/82 (84%)
Frame = -3 / -3
Query: 883 RGPCSFAAYFASV*MEGVE*RAWIRPSLFT**ISLSIFPNQLSAYWYLKSVPIVNMI*FV 704
RG SFA FASV*MEGVE RA+ RPSLFT**I+LSI NQLSAY YLKSVPIVNM FV
Sbjct: 247 RGHGSFAENFASV*MEGVEYRAFTRPSLFT**INLSICLNQLSAY*YLKSVPIVNMTWFV 68
Query: 703 LVIFACATAAATKSFTRSSTL* 638
LV FACA+AAATKSFTR STL*
Sbjct: 67 LVTFACASAAATKSFTRCSTL* 2
Score = 130 bits (278), Expect = 1e-029
Identities = 59/84 (70%), Positives = 65/84 (77%)
Frame = +1 / +1
Query: 637 IIMLKNE*MILLLQL*HRQISRGQIISCLQWEQTSNTNTQRVGSEIWTN*FTM*TRMAVS 816
I L N *MILLLQ HRQ+ +GQ +SCLQWEQTSN NT++VGS+ WTN*F M*TRMAV
Sbjct: 1 ITTLNNG*MILLLQRWHRQMLQGQTMSCLQWEQTSNINTRKVGSDRWTN*FIM*TRMAV* 180
Query: 817 MLFIPHLPFIPMQNMLQMSRGLSR 888
ML HLPF PMQN LQMS GL R
Sbjct: 181 MLCTLHLPFTPMQNFLQMSHGLLR 252
Score = 113 bits (242), Expect = 1e-024
Identities = 46/66 (69%), Positives = 53/66 (80%)
Frame = +2 / +2
Query: 686 TGKYHEDKSYHVYNGNRLQIPIRRELVRKYGQTNSLCEQGWPYPCSLFHTFHLYRCKICC 865
TGK ++DK HVYNGNRLQI IR +LV+ GQ NSLCEQGWP CS+ +TFHL+RCKI C
Sbjct: 50 TGKCYKDKPCHVYNGNRLQISIRGKLVQTDGQINSLCEQGWPCECSVLYTFHLHRCKIFC 229
Query: 866 K*AGAS 883
K*A AS
Sbjct: 230 K*AMAS 247
Score = 102 bits (218), Expect = 2e-021
Identities = 45/65 (69%), Positives = 51/65 (78%)
Frame = -1 / -1
Query: 882 EAPAHLQHILHRYKWKVWNKEHGYGHPCSHSELVCPYFRTNSLRIGI*SLFPL*T*YDLS 703
EA AHLQ ILHR KWKV + EH +GHPCSH+EL+CP TN RI I*SLFPL*T*+ LS
Sbjct: 246 EAMAHLQKILHRCKWKV*STEHSHGHPCSHNELICPSV*TNFPRIDI*SLFPL*T*HGLS 67
Query: 702 S*YLP 688
*+LP
Sbjct: 66 L*HLP 52
>gb|BF255585.2|BF255585 HVSMEf0007E04f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0007E04f, mRNA sequence
Length = 874
Score = 155 bits (332), Expect = 4e-037
Identities = 60/72 (83%), Positives = 68/72 (94%)
Frame = +3 / +3
Query: 672 AAAVAQANITRTNHIMFTMGTDFKYQYAESWFGNMDKLIHYVNKDGRIHALYSTPSIYTD 851
AAA+AQAN+TRTNH+MFTMGTDFKYQYAESWF MDKLIHYVNKDGR++ALYSTPSIYTD
Sbjct: 3 AAALAQANVTRTNHVMFTMGTDFKYQYAESWFRQMDKLIHYVNKDGRVNALYSTPSIYTD 182
Query: 852 AKYAANEQGPLQ 887
AK++ANE PL+
Sbjct: 183 AKFSANEPWPLK 218
Score = 140 bits (301), Expect = 8e-033
Identities = 52/72 (72%), Positives = 62/72 (86%)
Frame = -2 / -3
Query: 887 LERPLLICSIFCIGINGRCGIKSMDTAILVHIVN*FVHISEPTLCVLVFEVCSHCKHDMI 708
L+RP LIC FCIG+NGRC ++S+ TAILVHI+N*FVH+SEPT VL+FEVCSHCKHDM+
Sbjct: 218 LKRPWLICRKFCIGVNGRCRVQSIHTAILVHIMN*FVHLSEPTFRVLIFEVCSHCKHDMV 39
Query: 707 CPRDICLCYSCS 672
CP +ICLC CS
Sbjct: 38 CPCNICLCQRCS 3
Score = 119 bits (254), Expect = 3e-026
Identities = 52/73 (71%), Positives = 58/73 (79%)
Frame = +1 / +1
Query: 670 LLQL*HRQISRGQIISCLQWEQTSNTNTQRVGSEIWTN*FTM*TRMAVSMLFIPHLPFIP 849
LLQ HRQ+ +GQ +SCLQWEQTSN NT++VGS+ WTN*F M*TRMAV ML HLPF P
Sbjct: 1 LLQRWHRQMLQGQTMSCLQWEQTSNINTRKVGSDRWTN*FIM*TRMAV*MLCTLHLPFTP 180
Query: 850 MQNMLQMSRGLSR 888
MQN LQMS GL R
Sbjct: 181 MQNFLQMSHGLLR 219
Score = 113 bits (242), Expect = 1e-024
Identities = 46/66 (69%), Positives = 53/66 (80%)
Frame = +2 / +2
Query: 686 TGKYHEDKSYHVYNGNRLQIPIRRELVRKYGQTNSLCEQGWPYPCSLFHTFHLYRCKICC 865
TGK ++DK HVYNGNRLQI IR +LV+ GQ NSLCEQGWP CS+ +TFHL+RCKI C
Sbjct: 17 TGKCYKDKPCHVYNGNRLQISIRGKLVQTDGQINSLCEQGWPCECSVLYTFHLHRCKIFC 196
Query: 866 K*AGAS 883
K*A AS
Sbjct: 197 K*AMAS 214
Score = 110 bits (235), Expect = 1e-023
Identities = 56/71 (78%), Positives = 59/71 (83%)
Frame = -3 / -1
Query: 883 RGPCSFAAYFASV*MEGVE*RAWIRPSLFT**ISLSIFPNQLSAYWYLKSVPIVNMI*FV 704
RG SFA FASV*MEGVE RA+ RPSLFT**I+LSI NQLSAY YLKSVPIVNM FV
Sbjct: 214 RGHGSFAENFASV*MEGVEYRAFTRPSLFT**INLSICLNQLSAY*YLKSVPIVNMTWFV 35
Query: 703 LVIFACATAAA 671
LV FACA+AAA
Sbjct: 34 LVTFACASAAA 2
Score = 102 bits (218), Expect = 2e-021
Identities = 45/65 (69%), Positives = 51/65 (78%)
Frame = -1 / -2
Query: 882 EAPAHLQHILHRYKWKVWNKEHGYGHPCSHSELVCPYFRTNSLRIGI*SLFPL*T*YDLS 703
EA AHLQ ILHR KWKV + EH +GHPCSH+EL+CP TN RI I*SLFPL*T*+ LS
Sbjct: 213 EAMAHLQKILHRCKWKV*STEHSHGHPCSHNELICPSV*TNFPRIDI*SLFPL*T*HGLS 34
Query: 702 S*YLP 688
*+LP
Sbjct: 33 L*HLP 19
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 463,482,860
Number of Sequences: 312970
Number of extensions: 7824730
Number of successful extensions: 55176
Number of sequences better than 1.0e-020: 12
length of database: 58,378,179
effective HSP length: 52
effective length of database: 42,103,739
effective search space used: 10231208577
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)