TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 5532690.2.1
(863 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU966693.1|BU966693 HB02B04r BC Hordeum vulgare subsp. v... 200 2e-069
gb|CA020703.1|CA020703 HZ37D17r HZ Hordeum vulgare subsp. v... 200 5e-065
gb|AV927333.1|AV927333 AV927333 K. Sato unpublished cDNA li... 220 5e-061
gb|AV918113.1|AV918113 AV918113 K. Sato unpublished cDNA li... 234 6e-061
gb|AV931883.1|AV931883 AV931883 K. Sato unpublished cDNA li... 234 6e-061
gb|CB881980.1|CB881980 HM11H21w HM Hordeum vulgare subsp. v... 216 1e-055
gb|CA011092.1|CA011092 HT07B15u HT Hordeum vulgare subsp. v... 205 3e-052
gb|AV923809.1|AV923809 AV923809 K. Sato unpublished cDNA li... 196 1e-049
gb|BM372365.2|BM372365 EBro03_SQ004_M03_R root, 3 week, wat... 196 1e-049
gb|CD663740.1|CD663740 UCRHV18_06ca01_b1 Drought-stressed D... 188 4e-047
gb|BF628954.2|BF628954 HVSMEb0009F03f Hordeum vulgare seedl... 143 1e-045
gb|CA013000.1|CA013000 HT07B15r HT Hordeum vulgare subsp. v... 162 5e-045
gb|BQ760249.1|BQ760249 EBpi07_SQ003_M14_R pistil, 12 DPA, n... 144 2e-040
gb|BQ468512.1|BQ468512 HM01H14T HM Hordeum vulgare subsp. v... 144 7e-040
gb|BE194812.3|BE194812 HVSMEh0087A14f Hordeum vulgare 5-45 ... 87 2e-039
gb|BI960413.1|BI960413 HVSMEn0024I08f Hordeum vulgare rachi... 144 5e-034
gb|BQ468849.1|BQ468849 HM02I18r HM Hordeum vulgare subsp. v... 144 5e-034
gb|BQ460471.1|BQ460471 HA09H11r HA Hordeum vulgare subsp. v... 117 7e-034
gb|CA021686.1|CA021686 HZ40M22r HZ Hordeum vulgare subsp. v... 143 1e-033
gb|CA022183.1|CA022183 HZ42G07r HZ Hordeum vulgare subsp. v... 143 1e-033
gb|AV925753.1|AV925753 AV925753 K. Sato unpublished cDNA li... 109 2e-033
gb|BU982554.1|BU982554 HA26O10r HA Hordeum vulgare subsp. v... 102 5e-033
gb|BI953145.1|BI953145 HVSMEm0011E01f Hordeum vulgare green... 140 1e-032
gb|BM372495.2|BM372495 EBpi05_SQ003_C02_R pistil, 8 DPA, no... 140 1e-032
gb|BM372498.2|BM372498 EBpi05_SQ003_C05_R pistil, 8 DPA, no... 140 1e-032
gb|BM372479.2|BM372479 EBpi05_SQ003_B09_R pistil, 8 DPA, no... 140 1e-032
gb|BM372501.2|BM372501 EBpi05_SQ003_C08_R pistil, 8 DPA, no... 140 1e-032
gb|BQ471891.1|BQ471891 HV03M17r HV Hordeum vulgare subsp. v... 81 1e-026
gb|BI956900.1|BI956900 HVSMEn0005O20f Hordeum vulgare rachi... 120 1e-026
gb|BQ657146.1|BQ657146 HA09H11u HA Hordeum vulgare subsp. v... 117 6e-026
gb|BM100425.1|BM100425 EBma01_SQ005_C23_R maternal, 4 DPA, ... 111 5e-024
gb|AL511547.1|AL511547 AL511547 Hordeum vulgare Barke devel... 109 3e-023
gb|AV930889.1|AV930889 AV930889 K. Sato unpublished cDNA li... 109 3e-023
gb|AL511138.1|AL511138 AL511138 Hordeum vulgare Barke devel... 108 5e-023
gb|BU988389.1|BU988389 HF17H23r HF Hordeum vulgare subsp. v... 104 9e-022
gb|BU972244.1|BU972244 HB21B09r BC Hordeum vulgare subsp. v... 103 2e-021
gb|BU972337.1|BU972337 HB21F19r BC Hordeum vulgare subsp. v... 103 2e-021
>gb|BU966693.1|BU966693 HB02B04r BC Hordeum vulgare subsp. vulgare cDNA clone HB02B04
5-PRIME, mRNA sequence
Length = 552
Score = 200 bits (431), Expect(2) = 5e-065
Identities = 83/100 (83%), Positives = 88/100 (88%)
Frame = +1 / -3
Query: 562 DTVIFFGAKEMLYEYLE*LKPYPKPYTTSPV*NRYVLPG*PREGSALMFISVMGIAVKDS 741
D +I GA MLYEY E*L+PYPKPYTTSPV*NRYVLPG*PREGSALMFIS +G AVKDS
Sbjct: 391 DRLILCGACTMLYEYFE*LRPYPKPYTTSPV*NRYVLPG*PREGSALMFISFIGTAVKDS 212
Query: 742 GYQVIGSFPPGLYSPKRISGRTCPPTSPGYPSQRMLAIRG 861
GYQV+G+FPPGLYSPKRISGRTCPPTSPGYP R LAI G
Sbjct: 211 GYQVMGNFPPGLYSPKRISGRTCPPTSPGYPIHRTLAILG 92
Score = 186 bits (400), Expect(2) = 2e-069
Identities = 69/75 (92%), Positives = 74/75 (98%)
Frame = -1 / +3
Query: 863 DPRIASILWLGYPGEVGGQVLPEILFGEYNPGGKLPITWYPESFTAIPMTDMNMRADPSR 684
DPRIAS+LW+GYPGEVGGQVLPEILFGEYNPGGKLP+TWYPESFTA+PM DMNMRADPSR
Sbjct: 90 DPRIASVLWIGYPGEVGGQVLPEILFGEYNPGGKLPMTWYPESFTAVPMNDMNMRADPSR 269
Query: 683 GYPGRTYRFYTGDVV 639
GYPGRTYRFYTG+VV
Sbjct: 270 GYPGRTYRFYTGEVV 314
Score = 118 bits (252), Expect(2) = 6e-036
Identities = 54/97 (55%), Positives = 66/97 (68%)
Frame = -3 / +2
Query: 861 SANRKHSLARISWRGWWTSPSRNSFWRVQPRRKAAYNLVS*ILYCYSHD*YEHES*SFTR 682
S N K + IS WWTS SRNSF RVQ RRK A++LV IL+ S++*YEHES FTR
Sbjct: 92 SKNCKCPVDWISRGSWWTSSSRNSFRRVQSRRKIAHDLVPRILHRGSNE*YEHESRPFTR 271
Query: 681 LPWENISILHWRCSVWLWIWFKLLQIFI*HLLGSEED 571
LPW+NIS+LH R VW WI +LL++ I H S E+
Sbjct: 272 LPWKNISVLHRRSCVWFWIRSELLEVLIQHRTSSTEN 382
Score = 110 bits (234), Expect(2) = 2e-037
Identities = 56/100 (56%), Positives = 68/100 (68%)
Frame = +2 / -1
Query: 563 TR*SSSEPRRCYMNIWSNLNHIQSHTLHLQCKIDMFSQGSLVKDQLSCSYQSWE*Q*RIQ 742
T * S E RC M+ S+ + IQ+HT L+CK DMF QGS VK +LSCSY S E +*RI+
Sbjct: 390 TG*FSVELVRCCMSTSSSSDRIQNHTQLLRCKTDMFFQGSRVKGRLSCSYHSLEPR*RIR 211
Query: 743 DTKL*AAFLLGCTLQKEFLEGLVHQPRQDIRAKECLRFAD 862
TK A FLL CTL+KEFLE LVHQ DI++ L+F D
Sbjct: 210 GTKSWAIFLLDCTLRKEFLEELVHQLPLDIQSTGHLQFLD 91
Score = 98.7 bits (209), Expect(2) = 6e-028
Identities = 42/91 (46%), Positives = 54/91 (59%)
Frame = +3 / -2
Query: 591 DAI*IFGVT*TISKAIHYISSVKSICSPXXXXXXXXXXXXXXHGNSSKGFRIPSYRQLSS 770
D +*+ V T+SK IH S VK ICS H N +GF +PS+ Q SS
Sbjct: 362 DVV*VLRVAQTVSKTIHNFSGVKPICSSRVAA*RVGSHVHIIHWNRGEGFGVPSHGQFSS 183
Query: 771 WVVLSKKNFWKDLSTNLARISEPKNACDSRI 863
W+VLS+KNFWK+LSTN IS P++ C+S I
Sbjct: 182 WIVLSEKNFWKNLSTNFPWISNPQDTCNSWI 90
Score = 97.3 bits (206), Expect(2) = 2e-069
Identities = 38/48 (79%), Positives = 45/48 (93%)
Frame = -1 / +3
Query: 557 GIISRKPAYTRRDGLDFVKTEDIASCEALVFSVHVAVSNHGSMDGSHA 414
G+ISRKPAYTRRDGLD V+ EDIASCE+LVFSVH++V+N G+MDGSHA
Sbjct: 408 GLISRKPAYTRRDGLDCVQVEDIASCESLVFSVHISVANDGAMDGSHA 551
Score = 68.0 bits (142), Expect(2) = 5e-065
Identities = 30/46 (65%), Positives = 35/46 (76%)
Frame = +1 / -3
Query: 421 LPSMLP*FETAT*TENTRASHDAISSVFTKSSPSLLVYAGFLLIMP 558
LPSM P T TENTR SHDA+SS +T+S+PSL VYAGFLL+ P
Sbjct: 544 LPSMAPSLATEMWTENTRDSHDAMSSTWTQSNPSLRVYAGFLLMRP 407
Score = 65.7 bits (137), Expect(2) = 2e-037
Identities = 24/47 (51%), Positives = 33/47 (70%)
Frame = +3 / -2
Query: 417 MTPIHATMIRNSDVNREYQSFT*RDIFSFHKV*SIPPCVCRLSADNA 557
M P+H T++ + DV+R+YQ T* D+F+ V S+PPCVCRL D A
Sbjct: 548 MAPVHGTVVGDRDVDRKYQGLT*CDVFNLDTVQSVPPCVCRLPTDEA 408
Score = 52.8 bits (109), Expect(2) = 6e-036
Identities = 25/47 (53%), Positives = 26/47 (55%)
Frame = -2 / +1
Query: 556 ALSAESLHTQGGMD*TL*KLKISRHVKLWYSLFTSLFRIMVAWMGVM 416
A S SLHT GG D T+ KLK S HV WY L TS V W G M
Sbjct: 409 ASSVGSLHTHGGTDWTVSKLKTSHHVSPWYFLSTSRSPTTVPWTGAM 549
Score = 50.6 bits (104), Expect(3) = 2e-023
Identities = 26/48 (54%), Positives = 27/48 (56%)
Frame = -2 / +1
Query: 706 T*ELILHEATLGEHIDFTLEM*CMALDMV*VTPNIHIASPWLRRRSPC 563
T*E LH ATL EHI FT E CM LD V* T + H S L R C
Sbjct: 247 T*EPTLHAATLEEHIGFTPEKLCMVLDTV*ATRSTHTTSYKLHRELAC 390
Score = 50.6 bits (104), Expect(3) = 2e-023
Identities = 22/35 (62%), Positives = 25/35 (71%)
Frame = -2 / +1
Query: 862 IRESQAFFGSDILARLVDKSFQKFFLESTTQEESC 758
I+E Q G DI +LVDK FQKFF EST QEE+C
Sbjct: 91 IQELQVSCGLDIQGKLVDKFFQKFFSESTIQEENC 195
Score = 45.5 bits (93), Expect(3) = 2e-023
Identities = 21/46 (45%), Positives = 27/46 (58%)
Frame = -3 / +2
Query: 552 YQQKACIHKEGWTRLCEN*RYRVM*SSGILCSRRCFESW*HGWESC 415
+Q +ACIH EG LC +*R+R+M* GI C + HG E C
Sbjct: 413 HQ*EACIHTEGRIGLCPS*RHRIM*VPGIFCPHLGRQRRCHGREPC 550
Score = 45.5 bits (93), Expect(2) = 6e-028
Identities = 19/43 (44%), Positives = 25/43 (58%)
Frame = +2 / -1
Query: 413 QHDSHPCYHDSKQRREQRIPELHMTRYLQFSQSLVHPSLCMQA 541
+H S P + + R Q+IP HM R LQ S + PS+CMQA
Sbjct: 552 RHGSRPWHRRWRPRCGQKIPGTHMMRCLQLGHSPIRPSVCMQA 424
>gb|CA020703.1|CA020703 HZ37D17r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ37D17
5-PRIME, mRNA sequence
Length = 624
Score = 200 bits (431), Expect(2) = 2e-062
Identities = 83/100 (83%), Positives = 88/100 (88%)
Frame = +1 / -2
Query: 562 DTVIFFGAKEMLYEYLE*LKPYPKPYTTSPV*NRYVLPG*PREGSALMFISVMGIAVKDS 741
D +I GA MLYEY E*L+PYPKPYTTSPV*NRYVLPG*PREGSALMFIS +G AVKDS
Sbjct: 482 DRLILCGACTMLYEYFE*LRPYPKPYTTSPV*NRYVLPG*PREGSALMFISFIGTAVKDS 303
Query: 742 GYQVIGSFPPGLYSPKRISGRTCPPTSPGYPSQRMLAIRG 861
GYQV+G+FPPGLYSPKRISGRTCPPTSPGYP R LAI G
Sbjct: 302 GYQVMGNFPPGLYSPKRISGRTCPPTSPGYPIHRTLAILG 183
Score = 186 bits (400), Expect(2) = 5e-065
Identities = 69/75 (92%), Positives = 74/75 (98%)
Frame = -1 / +1
Query: 863 DPRIASILWLGYPGEVGGQVLPEILFGEYNPGGKLPITWYPESFTAIPMTDMNMRADPSR 684
DPRIAS+LW+GYPGEVGGQVLPEILFGEYNPGGKLP+TWYPESFTA+PM DMNMRADPSR
Sbjct: 181 DPRIASVLWIGYPGEVGGQVLPEILFGEYNPGGKLPMTWYPESFTAVPMNDMNMRADPSR 360
Query: 683 GYPGRTYRFYTGDVV 639
GYPGRTYRFYTG+VV
Sbjct: 361 GYPGRTYRFYTGEVV 405
Score = 118 bits (252), Expect(2) = 9e-034
Identities = 54/97 (55%), Positives = 66/97 (68%)
Frame = -3 / +3
Query: 861 SANRKHSLARISWRGWWTSPSRNSFWRVQPRRKAAYNLVS*ILYCYSHD*YEHES*SFTR 682
S N K + IS WWTS SRNSF RVQ RRK A++LV IL+ S++*YEHES FTR
Sbjct: 183 SKNCKCPVDWISRGSWWTSSSRNSFRRVQSRRKIAHDLVPRILHRGSNE*YEHESRPFTR 362
Query: 681 LPWENISILHWRCSVWLWIWFKLLQIFI*HLLGSEED 571
LPW+NIS+LH R VW WI +LL++ I H S E+
Sbjct: 363 LPWKNISVLHRRSCVWFWIRSELLEVLIQHRTSSTEN 473
Score = 110 bits (234), Expect(2) = 3e-034
Identities = 56/100 (56%), Positives = 68/100 (68%)
Frame = +2 / -3
Query: 563 TR*SSSEPRRCYMNIWSNLNHIQSHTLHLQCKIDMFSQGSLVKDQLSCSYQSWE*Q*RIQ 742
T * S E RC M+ S+ + IQ+HT L+CK DMF QGS VK +LSCSY S E +*RI+
Sbjct: 481 TG*FSVELVRCCMSTSSSSDRIQNHTQLLRCKTDMFFQGSRVKGRLSCSYHSLEPR*RIR 302
Query: 743 DTKL*AAFLLGCTLQKEFLEGLVHQPRQDIRAKECLRFAD 862
TK A FLL CTL+KEFLE LVHQ DI++ L+F D
Sbjct: 301 GTKSWAIFLLDCTLRKEFLEELVHQLPLDIQSTGHLQFLD 182
Score = 98.7 bits (209), Expect(2) = 5e-026
Identities = 42/91 (46%), Positives = 54/91 (59%)
Frame = +3 / -1
Query: 591 DAI*IFGVT*TISKAIHYISSVKSICSPXXXXXXXXXXXXXXHGNSSKGFRIPSYRQLSS 770
D +*+ V T+SK IH S VK ICS H N +GF +PS+ Q SS
Sbjct: 453 DVV*VLRVAQTVSKTIHNFSGVKPICSSRVAA*RVGSHVHIIHWNRGEGFGVPSHGQFSS 274
Query: 771 WVVLSKKNFWKDLSTNLARISEPKNACDSRI 863
W+VLS+KNFWK+LSTN IS P++ C+S I
Sbjct: 273 WIVLSEKNFWKNLSTNFPWISNPQDTCNSWI 181
Score = 82.2 bits (173), Expect(2) = 5e-065
Identities = 32/42 (76%), Positives = 39/42 (92%)
Frame = -1 / +1
Query: 557 GIISRKPAYTRRDGLDFVKTEDIASCEALVFSVHVAVSNHGS 432
G+ISRKPAYTRRDGLD V+ EDIASCE+LVFSVH++V+N G+
Sbjct: 499 GLISRKPAYTRRDGLDCVQVEDIASCESLVFSVHISVANDGA 624
Score = 59.3 bits (123), Expect(2) = 2e-062
Identities = 26/41 (63%), Positives = 31/41 (75%)
Frame = +1 / -2
Query: 436 P*FETAT*TENTRASHDAISSVFTKSSPSLLVYAGFLLIMP 558
P T TENTR SHDA+SS +T+S+PSL VYAGFLL+ P
Sbjct: 620 PSLATEMWTENTRDSHDAMSSTWTQSNPSLRVYAGFLLMRP 498
Score = 55.1 bits (114), Expect(2) = 3e-034
Identities = 21/41 (51%), Positives = 29/41 (70%)
Frame = +3 / -1
Query: 435 TMIRNSDVNREYQSFT*RDIFSFHKV*SIPPCVCRLSADNA 557
T++ + DV+R+YQ T* D+F+ V S+PPCVCRL D A
Sbjct: 621 TVVGDRDVDRKYQGLT*CDVFNLDTVQSVPPCVCRLPTDEA 499
Score = 50.6 bits (104), Expect(3) = 3e-022
Identities = 26/48 (54%), Positives = 27/48 (56%)
Frame = -2 / +2
Query: 706 T*ELILHEATLGEHIDFTLEM*CMALDMV*VTPNIHIASPWLRRRSPC 563
T*E LH ATL EHI FT E CM LD V* T + H S L R C
Sbjct: 338 T*EPTLHAATLEEHIGFTPEKLCMVLDTV*ATRSTHTTSYKLHRELAC 481
Score = 50.6 bits (104), Expect(3) = 3e-022
Identities = 22/35 (62%), Positives = 25/35 (71%)
Frame = -2 / +2
Query: 862 IRESQAFFGSDILARLVDKSFQKFFLESTTQEESC 758
I+E Q G DI +LVDK FQKFF EST QEE+C
Sbjct: 182 IQELQVSCGLDIQGKLVDKFFQKFFSESTIQEENC 286
Score = 45.5 bits (93), Expect(2) = 9e-034
Identities = 21/35 (60%), Positives = 22/35 (62%)
Frame = -2 / +2
Query: 556 ALSAESLHTQGGMD*TL*KLKISRHVKLWYSLFTS 452
A S SLHT GG D T+ KLK S HV WY L TS
Sbjct: 500 ASSVGSLHTHGGTDWTVSKLKTSHHVSPWYFLSTS 604
Score = 41.4 bits (84), Expect(3) = 3e-022
Identities = 17/31 (54%), Positives = 22/31 (70%)
Frame = -3 / +3
Query: 552 YQQKACIHKEGWTRLCEN*RYRVM*SSGILC 460
+Q +ACIH EG LC +*R+R+M* GI C
Sbjct: 504 HQ*EACIHTEGRIGLCPS*RHRIM*VPGIFC 596
Score = 39.1 bits (79), Expect(2) = 5e-026
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +2 / -3
Query: 446 KQRREQRIPELHMTRYLQFSQSLVHPSLCMQA 541
+ R Q+IP HM R LQ S + PS+CMQA
Sbjct: 610 RPRCGQKIPGTHMMRCLQLGHSPIRPSVCMQA 515
>gb|AV927333.1|AV927333 AV927333 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd1j19 3', mRNA sequence
Length = 657
Score = 220 bits (474), Expect(2) = 5e-061
Identities = 89/109 (81%), Positives = 104/109 (95%)
Frame = -1 / -3
Query: 557 GIISRKPAYTRRDGLDFVKTEDIASCEALVFSVHVAVSNHGSMDGSHAVLLFARSKSSVP 378
G+ISRKPAYTRRDGLD+V+ EDIASCE+LVFSVH++V+N G+MDGSHAVLLFARSKSSVP
Sbjct: 529 GLISRKPAYTRRDGLDYVQVEDIASCESLVFSVHISVANXGAMDGSHAVLLFARSKSSVP 350
Query: 377 GFPIKQLVGFERVHTAAGSASSVEITVDPCKHMSAANPEGKRVLLLGAH 231
GFP+KQLVGFERV+TAAGS+ +V ITVDPCK+MSAAN EG+RVLLLG+H
Sbjct: 349 GFPLKQLVGFERVYTAAGSSKNVAITVDPCKYMSAANTEGRRVLLLGSH 203
Score = 170 bits (366), Expect(2) = 4e-054
Identities = 79/109 (72%), Positives = 85/109 (77%)
Frame = +1 / +3
Query: 232 WAPNRSTLLPSGLAALICLQGSTVISTLDALPAAVWTRSKPTSCFIGKPGTLDFDLANRR 411
W P STLLPS LAALI LQGSTVI+T LPAAV TRSKPTSCF GKPGTLDFDLAN +
Sbjct: 204 WDPRSSTLLPSVLAALIYLQGSTVIATFFELPAAV*TRSKPTSCFRGKPGTLDFDLANSK 383
Query: 412 TA*LPSMLP*FETAT*TENTRASHDAISSVFTKSSPSLLVYAGFLLIMP 558
TA LPSM P T TENTR SHDA+SS +T S+PSL VYAGFLL+ P
Sbjct: 384 TAWLPSMAPXLATEMWTENTRDSHDAMSSTWT*SNPSLRVYAGFLLMRP 530
Score = 122 bits (261), Expect(2) = 1e-031
Identities = 53/109 (48%), Positives = 72/109 (66%)
Frame = +3 / +2
Query: 231 MGTQ*KYPFAFRIGCAHMLAGVNSNLHTGCTASRRVDTLKANQLFYRKARDA*FRSREQK 410
MG+Q ++P A +G AH+ AG++ + H TA VD LK NQLF R+AR+A RS EQ
Sbjct: 203 MGSQEQHPSALGVGRAHIFAGIHRDRHIF*TAGGSVDALKTNQLFQREARNARLRSCEQ* 382
Query: 411 NSMTPIHATMIRNSDVNREYQSFT*RDIFSFHKV*SIPPCVCRLSADNA 557
+ M P+H T + + DV+R+YQ T* D+F+ V S+PPCVCRL D A
Sbjct: 383 DGMAPVHGTXVGDRDVDRKYQGLT*CDVFNLDIVQSVPPCVCRLPTDEA 529
Score = 116 bits (249), Expect(2) = 4e-029
Identities = 56/109 (51%), Positives = 67/109 (61%)
Frame = -2 / -1
Query: 556 ALSAESLHTQGGMD*TL*KLKISRHVKLWYSLFTSLFRIMVAWMGVMLFFCSRDRNQASR 377
A S SLHT GG D T+ KLK S HV WY L TS V W G M +CS+DR++A R
Sbjct: 528 ASSVGSLHTHGGTDWTMSKLKTSHHVSPWYFLSTSRSPTXVPWTGAMPSYCSQDRSRAFR 349
Query: 376 AFL*NSWLALSVSTRRLAVHPVWRLLLTPASI*AQPILKAKGYFYWVPM 230
A L*NSWL LS ST AV +WR PA+I*A+P +A+G W P+
Sbjct: 348 ASL*NSWLVLSASTLPPAVQKMWRSRWIPANI*ARPTPRAEGCCSWDPI 202
Score = 110 bits (234), Expect = 1e-023
Identities = 49/103 (47%), Positives = 61/103 (59%)
Frame = +2 / +1
Query: 233 GHPIEVPFCLQDWLRSYACRGQQ*SPHWMHCQPPCGHAQSQPAVL*ESPGRLISISRTEE 412
G P PFC + W RSY CR *SPH+++C+ C AQ+QPAV SP R SI RT
Sbjct: 205 GIPGAAPFCPRCWPRSYICRDPP*SPHFLNCRRQCRRAQNQPAVSEGSPERSTSILRTVR 384
Query: 413 QHDSHPCYHDSKQRREQRIPELHMTRYLQFSQSLVHPSLCMQA 541
+H S P + + R Q+IP HM R LQ S + PS+CMQA
Sbjct: 385 RHGSRPWHRRWRPRCGQKIPGTHMMRCLQLGHSPIRPSVCMQA 513
Score = 100 bits (214), Expect(2) = 1e-022
Identities = 50/107 (46%), Positives = 64/107 (59%)
Frame = -3 / -2
Query: 552 YQQKACIHKEGWTRLCEN*RYRVM*SSGILCSRRCFESW*HGWESCCSSVREIEIKRPGL 373
+Q +ACIH EG LC +*R+R+M* GI C + HG E C +VR+IE++R GL
Sbjct: 524 HQ*EACIHTEGRIGLCPS*RHRIM*VPGIFCPHLGRQRRCHGREPCRLTVRKIEVERSGL 345
Query: 372 SYKTAGWL*ACPHGGWQCIQCGDYC*PLQAYERSQS*RQKGTSIGCP 232
+TAGW *A H Q +CGD+ LQ YER Q QKG + G P
Sbjct: 344 PSETAGWF*ARLHCRRQFKKCGDHGGSLQIYERGQHRGQKGAAPGIP 204
Score = 61.6 bits (128), Expect(2) = 4e-054
Identities = 27/37 (72%), Positives = 29/37 (78%)
Frame = +1 / +3
Query: 562 DTVIFFGAKEMLYEYLE*LKPYPKPYTTSPV*NRYVL 672
D +I GA MLYEY E*L+PY KPYTTS V*NRYVL
Sbjct: 546 DRLILCGACTMLYEYFE*LRPYXKPYTTSXV*NRYVL 656
Score = 35.0 bits (70), Expect(2) = 5e-061
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = -3 / -2
Query: 672 ENISILHWRCSVWLWIWFKLLQIFI*HLLGSEED 571
+NIS+LH R VW I +LL++ I H S E+
Sbjct: 656 KNISVLHRRSCVWFXIRSELLEVLIQHRTSSTEN 555
Score = 34.5 bits (69), Expect(2) = 1e-031
Identities = 17/36 (47%), Positives = 22/36 (61%)
Frame = +2 / +1
Query: 563 TR*SSSEPRRCYMNIWSNLNHIQSHTLHLQCKIDMF 670
T * S E RC M+ S+ + Q+HT L+CK DMF
Sbjct: 547 TG*FSVELVRCCMSTSSSSDRXQNHTQLLRCKTDMF 654
Score = 31.3 bits (62), Expect(2) = 4e-029
Identities = 16/36 (44%), Positives = 17/36 (47%)
Frame = -2 / -1
Query: 670 EHIDFTLEM*CMALDMV*VTPNIHIASPWLRRRSPC 563
EHI FT CM L V* T + H S L R C
Sbjct: 654 EHIGFTPXKLCMVLXTV*ATRSTHTTSYKLHRELAC 547
Score = 25.4 bits (49), Expect(2) = 1e-022
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = -1 / -3
Query: 671 RTYRFYTGDVV 639
RTYRFYT +VV
Sbjct: 655 RTYRFYTXEVV 623
>gb|AV918113.1|AV918113 AV918113 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17o10 3', mRNA sequence
Length = 597
Score = 234 bits (505), Expect = 6e-061
Identities = 98/126 (77%), Positives = 114/126 (90%)
Frame = -1 / -2
Query: 557 GIISRKPAYTRRDGLDFVKTEDIASCEALVFSVHVAVSNHGSMDGSHAVLLFARSKSSVP 378
G+ISRKPAYTRRDGLD+V+ EDIASCE+LVFSVH++V+N G+MDGSHAVLLFARSKSSVP
Sbjct: 521 GLISRKPAYTRRDGLDYVQVEDIASCESLVFSVHISVANDGAMDGSHAVLLFARSKSSVP 342
Query: 377 GFPIKQLVGFERVHTAAGSASSVEITVDPCKHMSAANPEGKRVLLLGAHVLTVGDEEFEL 198
GFP+KQLVGFERV+TAAGS+ +V ITVDPCK+MSAAN EG+RVLLLG+H L VGDE E
Sbjct: 341 GFPLKQLVGFERVYTAAGSSKNVAITVDPCKYMSAANTEGRRVLLLGSHHLMVGDEVHEF 162
Query: 197 SIEL*Q 180
IE *+
Sbjct: 161 VIEA*R 144
Score = 177 bits (380), Expect(2) = 6e-046
Identities = 82/114 (71%), Positives = 89/114 (78%)
Frame = +1 / +1
Query: 217 PTVRTWAPNRSTLLPSGLAALICLQGSTVISTLDALPAAVWTRSKPTSCFIGKPGTLDFD 396
PT+R W P STLLPS LAALI LQGSTVI+T LPAAV TRSKPTSCF GKPGTLDFD
Sbjct: 181 PTMR*WDPRSSTLLPSVLAALIYLQGSTVIATFFELPAAV*TRSKPTSCFRGKPGTLDFD 360
Query: 397 LANRRTA*LPSMLP*FETAT*TENTRASHDAISSVFTKSSPSLLVYAGFLLIMP 558
LAN +TA LPSM P T TENTR SHDA+SS +T S+PSL VYAGFLL+ P
Sbjct: 361 LANSKTAWLPSMAPSLATEMWTENTRDSHDAMSSTWT*SNPSLRVYAGFLLMRP 522
Score = 126 bits (269), Expect = 2e-028
Identities = 54/116 (46%), Positives = 77/116 (66%)
Frame = +3 / +3
Query: 210 FITHR*NMGTQ*KYPFAFRIGCAHMLAGVNSNLHTGCTASRRVDTLKANQLFYRKARDA* 389
F+++ MG+Q ++P A +G AH+ AG++ + H TA VD LK NQLF R+AR+A
Sbjct: 174 FVSYHEMMGSQEQHPSALGVGRAHIFAGIHRDRHIF*TAGGSVDALKTNQLFQREARNAR 353
Query: 390 FRSREQKNSMTPIHATMIRNSDVNREYQSFT*RDIFSFHKV*SIPPCVCRLSADNA 557
RS EQ + M P+H T++ + DV+R+YQ T* D+F+ V S+PPCVCRL D A
Sbjct: 354 LRSCEQ*DGMAPVHGTVVGDRDVDRKYQGLT*CDVFNLDIVQSVPPCVCRLPTDEA 521
Score = 116 bits (249), Expect = 1e-025
Identities = 56/109 (51%), Positives = 67/109 (61%)
Frame = -2 / -3
Query: 556 ALSAESLHTQGGMD*TL*KLKISRHVKLWYSLFTSLFRIMVAWMGVMLFFCSRDRNQASR 377
A S SLHT GG D T+ KLK S HV WY L TS V W G M +CS+DR++A R
Sbjct: 520 ASSVGSLHTHGGTDWTMSKLKTSHHVSPWYFLSTSRSPTTVPWTGAMPSYCSQDRSRAFR 341
Query: 376 AFL*NSWLALSVSTRRLAVHPVWRLLLTPASI*AQPILKAKGYFYWVPM 230
A L*NSWL LS ST AV +WR PA+I*A+P +A+G W P+
Sbjct: 340 ASL*NSWLVLSASTLPPAVQKMWRSRWIPANI*ARPTPRAEGCCSWDPI 194
Score = 113 bits (241), Expect = 2e-024
Identities = 52/113 (46%), Positives = 65/113 (57%)
Frame = +2 / +2
Query: 203 RTLHHPPLEHGHPIEVPFCLQDWLRSYACRGQQ*SPHWMHCQPPCGHAQSQPAVL*ESPG 382
R L P + G P PFC + W RSY CR *SPH+++C+ C AQ+QPAV SP
Sbjct: 167 RALRLLP*DDGIPGAAPFCPRCWPRSYICRDPP*SPHFLNCRRQCRRAQNQPAVSEGSPE 346
Query: 383 RLISISRTEEQHDSHPCYHDSKQRREQRIPELHMTRYLQFSQSLVHPSLCMQA 541
R SI RT +H S P + + R Q+IP HM R LQ S + PS+CMQA
Sbjct: 347 RSTSILRTVRRHGSRPWHRRWRPRCGQKIPGTHMMRCLQLGHSPIRPSVCMQA 505
Score = 109 bits (232), Expect = 3e-023
Identities = 55/124 (44%), Positives = 73/124 (58%)
Frame = -3 / -1
Query: 552 YQQKACIHKEGWTRLCEN*RYRVM*SSGILCSRRCFESW*HGWESCCSSVREIEIKRPGL 373
+Q +ACIH EG LC +*R+R+M* GI C + HG E C +VR+IE++R GL
Sbjct: 516 HQ*EACIHTEGRIGLCPS*RHRIM*VPGIFCPHLGRQRRCHGREPCRLTVRKIEVERSGL 337
Query: 372 SYKTAGWL*ACPHGGWQCIQCGDYC*PLQAYERSQS*RQKGTSIGCPCSNGG**RVRIIH 193
+TAGW *A H Q +CGD+ LQ YER Q QKG + G P S+G R+ H
Sbjct: 336 PSETAGWF*ARLHCRRQFKKCGDHGGSLQIYERGQHRGQKGAAPGIPSSHGRRRSARVCH 157
Query: 192 *TLT 181
++T
Sbjct: 156 RSIT 145
Score = 27.6 bits (54), Expect(2) = 6e-046
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +1 / +1
Query: 562 DTVIFFGAKEMLYEYLE*LK 621
D +I GA MLYEY E*L+
Sbjct: 538 DRLILCGACTMLYEYFE*LR 597
>gb|AV931883.1|AV931883 AV931883 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd26i20 3', mRNA sequence
Length = 598
Score = 234 bits (505), Expect = 6e-061
Identities = 98/126 (77%), Positives = 114/126 (90%)
Frame = -1 / -2
Query: 557 GIISRKPAYTRRDGLDFVKTEDIASCEALVFSVHVAVSNHGSMDGSHAVLLFARSKSSVP 378
G+ISRKPAYTRRDGLD+V+ EDIASCE+LVFSVH++V+N G+MDGSHAVLLFARSKSSVP
Sbjct: 522 GLISRKPAYTRRDGLDYVQVEDIASCESLVFSVHISVANDGAMDGSHAVLLFARSKSSVP 343
Query: 377 GFPIKQLVGFERVHTAAGSASSVEITVDPCKHMSAANPEGKRVLLLGAHVLTVGDEEFEL 198
GFP+KQLVGFERV+TAAGS+ +V ITVDPCK+MSAAN EG+RVLLLG+H L VGDE E
Sbjct: 342 GFPLKQLVGFERVYTAAGSSKNVAITVDPCKYMSAANTEGRRVLLLGSHHLMVGDEVHEF 163
Query: 197 SIEL*Q 180
IE *+
Sbjct: 162 VIEA*R 145
Score = 177 bits (380), Expect(2) = 6e-046
Identities = 82/114 (71%), Positives = 89/114 (78%)
Frame = +1 / +2
Query: 217 PTVRTWAPNRSTLLPSGLAALICLQGSTVISTLDALPAAVWTRSKPTSCFIGKPGTLDFD 396
PT+R W P STLLPS LAALI LQGSTVI+T LPAAV TRSKPTSCF GKPGTLDFD
Sbjct: 182 PTMR*WDPRSSTLLPSVLAALIYLQGSTVIATFFELPAAV*TRSKPTSCFRGKPGTLDFD 361
Query: 397 LANRRTA*LPSMLP*FETAT*TENTRASHDAISSVFTKSSPSLLVYAGFLLIMP 558
LAN +TA LPSM P T TENTR SHDA+SS +T S+PSL VYAGFLL+ P
Sbjct: 362 LANSKTAWLPSMAPSLATEMWTENTRDSHDAMSSTWT*SNPSLRVYAGFLLMRP 523
Score = 126 bits (269), Expect = 2e-028
Identities = 54/116 (46%), Positives = 77/116 (66%)
Frame = +3 / +1
Query: 210 FITHR*NMGTQ*KYPFAFRIGCAHMLAGVNSNLHTGCTASRRVDTLKANQLFYRKARDA* 389
F+++ MG+Q ++P A +G AH+ AG++ + H TA VD LK NQLF R+AR+A
Sbjct: 175 FVSYHEMMGSQEQHPSALGVGRAHIFAGIHRDRHIF*TAGGSVDALKTNQLFQREARNAR 354
Query: 390 FRSREQKNSMTPIHATMIRNSDVNREYQSFT*RDIFSFHKV*SIPPCVCRLSADNA 557
RS EQ + M P+H T++ + DV+R+YQ T* D+F+ V S+PPCVCRL D A
Sbjct: 355 LRSCEQ*DGMAPVHGTVVGDRDVDRKYQGLT*CDVFNLDIVQSVPPCVCRLPTDEA 522
Score = 116 bits (249), Expect = 1e-025
Identities = 56/109 (51%), Positives = 67/109 (61%)
Frame = -2 / -3
Query: 556 ALSAESLHTQGGMD*TL*KLKISRHVKLWYSLFTSLFRIMVAWMGVMLFFCSRDRNQASR 377
A S SLHT GG D T+ KLK S HV WY L TS V W G M +CS+DR++A R
Sbjct: 521 ASSVGSLHTHGGTDWTMSKLKTSHHVSPWYFLSTSRSPTTVPWTGAMPSYCSQDRSRAFR 342
Query: 376 AFL*NSWLALSVSTRRLAVHPVWRLLLTPASI*AQPILKAKGYFYWVPM 230
A L*NSWL LS ST AV +WR PA+I*A+P +A+G W P+
Sbjct: 341 ASL*NSWLVLSASTLPPAVQKMWRSRWIPANI*ARPTPRAEGCCSWDPI 195
Score = 113 bits (241), Expect = 2e-024
Identities = 52/113 (46%), Positives = 65/113 (57%)
Frame = +2 / +3
Query: 203 RTLHHPPLEHGHPIEVPFCLQDWLRSYACRGQQ*SPHWMHCQPPCGHAQSQPAVL*ESPG 382
R L P + G P PFC + W RSY CR *SPH+++C+ C AQ+QPAV SP
Sbjct: 168 RALRLLP*DDGIPGAAPFCPRCWPRSYICRDPP*SPHFLNCRRQCRRAQNQPAVSEGSPE 347
Query: 383 RLISISRTEEQHDSHPCYHDSKQRREQRIPELHMTRYLQFSQSLVHPSLCMQA 541
R SI RT +H S P + + R Q+IP HM R LQ S + PS+CMQA
Sbjct: 348 RSTSILRTVRRHGSRPWHRRWRPRCGQKIPGTHMMRCLQLGHSPIRPSVCMQA 506
Score = 109 bits (232), Expect = 3e-023
Identities = 55/124 (44%), Positives = 73/124 (58%)
Frame = -3 / -1
Query: 552 YQQKACIHKEGWTRLCEN*RYRVM*SSGILCSRRCFESW*HGWESCCSSVREIEIKRPGL 373
+Q +ACIH EG LC +*R+R+M* GI C + HG E C +VR+IE++R GL
Sbjct: 517 HQ*EACIHTEGRIGLCPS*RHRIM*VPGIFCPHLGRQRRCHGREPCRLTVRKIEVERSGL 338
Query: 372 SYKTAGWL*ACPHGGWQCIQCGDYC*PLQAYERSQS*RQKGTSIGCPCSNGG**RVRIIH 193
+TAGW *A H Q +CGD+ LQ YER Q QKG + G P S+G R+ H
Sbjct: 337 PSETAGWF*ARLHCRRQFKKCGDHGGSLQIYERGQHRGQKGAAPGIPSSHGRRRSARVCH 158
Query: 192 *TLT 181
++T
Sbjct: 157 RSIT 146
Score = 27.6 bits (54), Expect(2) = 6e-046
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +1 / +2
Query: 562 DTVIFFGAKEMLYEYLE*LK 621
D +I GA MLYEY E*L+
Sbjct: 539 DRLILCGACTMLYEYFE*LR 598
>gb|CB881980.1|CB881980 HM11H21w HM Hordeum vulgare subsp. vulgare cDNA clone HM11H21
3-PRIME, mRNA sequence
Length = 518
Score = 216 bits (467), Expect = 1e-055
Identities = 92/119 (77%), Positives = 106/119 (89%)
Frame = -1 / -1
Query: 536 AYTRRDGLDFVKTEDIASCEALVFSVHVAVSNHGSMDGSHAVLLFARSKSSVPGFPIKQL 357
AYTRRDGLD V+ EDIASCE+LVFSVH++V+N G+MDGSHAVLLFARSKSSVPGFP+KQL
Sbjct: 518 AYTRRDGLDCVQVEDIASCESLVFSVHISVANDGAMDGSHAVLLFARSKSSVPGFPLKQL 339
Query: 356 VGFERVHTAAGSASSVEITVDPCKHMSAANPEGKRVLLLGAHVLTVGDEEFELSIEL*Q 180
VGFERV+TAAGS+ +V ITVDPCK+MSAAN EG+RVLLLG+H L VGDE E IE *+
Sbjct: 338 VGFERVYTAAGSSKNVAITVDPCKYMSAANTEGRRVLLLGSHHLMVGDEVHEFVIEA*R 162
Score = 165 bits (354), Expect = 4e-040
Identities = 76/106 (71%), Positives = 83/106 (78%)
Frame = +1 / +1
Query: 217 PTVRTWAPNRSTLLPSGLAALICLQGSTVISTLDALPAAVWTRSKPTSCFIGKPGTLDFD 396
PT+R W P STLLPS LAALI LQGSTVI+T LPAAV TRSKPTSCF GKPGTLDFD
Sbjct: 199 PTMR*WDPRSSTLLPSVLAALIYLQGSTVIATFFELPAAV*TRSKPTSCFRGKPGTLDFD 378
Query: 397 LANRRTA*LPSMLP*FETAT*TENTRASHDAISSVFTKSSPSLLVY 534
LAN +TA LPSM P T TENTR SHDA+SS +T+S+PSL VY
Sbjct: 379 LANSKTAWLPSMAPSLATEMWTENTRDSHDAMSSTWTQSNPSLRVY 516
Score = 114 bits (244), Expect = 6e-025
Identities = 48/109 (44%), Positives = 73/109 (66%)
Frame = +3 / +3
Query: 210 FITHR*NMGTQ*KYPFAFRIGCAHMLAGVNSNLHTGCTASRRVDTLKANQLFYRKARDA* 389
F+++ MG+Q ++P A +G AH+ AG++ + H TA V+ L+ NQLF R+AR+A
Sbjct: 192 FVSYHEMMGSQEQHPSALGVGRAHIFAGIHRDRHIF*TAGGSVNALETNQLFQREARNAR 371
Query: 390 FRSREQKNSMTPIHATMIRNSDVNREYQSFT*RDIFSFHKV*SIPPCVC 536
RS EQ + M P+H T++ + DV+R+YQ T* D+F+ V S+PPCVC
Sbjct: 372 LRSCEQ*DGMAPVHGTVVGDRDVDRKYQGLT*CDVFNLDTVQSVPPCVC 518
Score = 107 bits (228), Expect = 9e-023
Identities = 49/111 (44%), Positives = 63/111 (56%)
Frame = +2 / +2
Query: 203 RTLHHPPLEHGHPIEVPFCLQDWLRSYACRGQQ*SPHWMHCQPPCGHAQSQPAVL*ESPG 382
R L P + G P PFC + W RSY CR *SPH+++C+ C A++QPAV SP
Sbjct: 185 RALRLLP*DDGIPGAAPFCPRCWPRSYICRDPP*SPHFLNCRRQCKRARNQPAVSEGSPE 364
Query: 383 RLISISRTEEQHDSHPCYHDSKQRREQRIPELHMTRYLQFSQSLVHPSLCM 535
R SI RT +H S P + + R Q+IP HM R LQ S + PS+CM
Sbjct: 365 RSTSILRTVRRHGSRPWHRRWRPRCGQKIPGTHMMRCLQLGHSPIRPSVCM 517
Score = 105 bits (224), Expect = 3e-022
Identities = 50/102 (49%), Positives = 61/102 (59%)
Frame = -2 / -2
Query: 535 HTQGGMD*TL*KLKISRHVKLWYSLFTSLFRIMVAWMGVMLFFCSRDRNQASRAFL*NSW 356
HT GG D T+ KLK S HV WY L TS V W G M +CS+DR++A RA L*NSW
Sbjct: 517 HTHGGTDWTVSKLKTSHHVSPWYFLSTSRSPTTVPWTGAMPSYCSQDRSRAFRASL*NSW 338
Query: 355 LALSVSTRRLAVHPVWRLLLTPASI*AQPILKAKGYFYWVPM 230
L S T AV +WR PA+I*A+P +A+G W P+
Sbjct: 337 LVSSAFTLPPAVQKMWRSRWIPANI*ARPTPRAEGCCSWDPI 212
>gb|CA011092.1|CA011092 HT07B15u HT Hordeum vulgare subsp. vulgare cDNA clone HT07B15
3-PRIME, mRNA sequence
Length = 503
Score = 205 bits (442), Expect = 3e-052
Identities = 87/116 (75%), Positives = 102/116 (87%)
Frame = -1 / -1
Query: 527 RRDGLDFVKTEDIASCEALVFSVHVAVSNHGSMDGSHAVLLFARSKSSVPGFPIKQLVGF 348
R +GLD V+ EDIASCE+LVFSVH++V+N G+MDGSHAVLLFARSKSSVPGFP+KQLVGF
Sbjct: 503 RHEGLDCVQVEDIASCESLVFSVHISVANDGAMDGSHAVLLFARSKSSVPGFPLKQLVGF 324
Query: 347 ERVHTAAGSASSVEITVDPCKHMSAANPEGKRVLLLGAHVLTVGDEEFELSIEL*Q 180
ERV+TAAGS+ +V ITVDPCK+MSAAN EG+RVLLLG+H L VGDE E IE *+
Sbjct: 323 ERVYTAAGSSKNVAITVDPCKYMSAANTEGRRVLLLGSHHLMVGDEVHEFVIEA*R 156
Score = 159 bits (341), Expect = 2e-038
Identities = 73/102 (71%), Positives = 80/102 (78%)
Frame = +1 / +1
Query: 217 PTVRTWAPNRSTLLPSGLAALICLQGSTVISTLDALPAAVWTRSKPTSCFIGKPGTLDFD 396
PT+R W P STLLPS LAALI LQGSTVI+T LPAAV TRSKPTSCF GKPGTLDFD
Sbjct: 193 PTMR*WDPRSSTLLPSVLAALIYLQGSTVIATFFELPAAV*TRSKPTSCFRGKPGTLDFD 372
Query: 397 LANRRTA*LPSMLP*FETAT*TENTRASHDAISSVFTKSSPS 522
LAN +TA LPSM P T TENTR SHDA+SS +T+S+PS
Sbjct: 373 LANSKTAWLPSMAPSLATEMWTENTRDSHDAMSSTWTQSNPS 498
Score = 102 bits (217), Expect = 3e-021
Identities = 45/106 (42%), Positives = 69/106 (65%)
Frame = +3 / +3
Query: 210 FITHR*NMGTQ*KYPFAFRIGCAHMLAGVNSNLHTGCTASRRVDTLKANQLFYRKARDA* 389
F+++ MG+Q ++P A +G AH+ AG++ + H TA VD L+ NQLF R+AR+A
Sbjct: 186 FVSYHEMMGSQEQHPSALGVGRAHIFAGIHRDRHIF*TAGGSVDALETNQLFQREARNAR 365
Query: 390 FRSREQKNSMTPIHATMIRNSDVNREYQSFT*RDIFSFHKV*SIPP 527
RS EQ + M P+H T++ + DV+R+YQ T* D+F+ V S+ P
Sbjct: 366 LRSCEQ*DGMAPVHGTVVGDRDVDRKYQGLT*CDVFNLDTVQSLVP 503
>gb|AV923809.1|AV923809 AV923809 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd1j19 5', mRNA sequence
Length = 544
Score = 196 bits (423), Expect = 1e-049
Identities = 81/94 (86%), Positives = 85/94 (90%)
Frame = +1 / -1
Query: 580 GAKEMLYEYLE*LKPYPKPYTTSPV*NRYVLPG*PREGSALMFISVMGIAVKDSGYQVIG 759
GA MLYEY E*L+PYPKPYTTSPV*NRYVLPG*PREGSALMFIS +G AVKDSGYQV+G
Sbjct: 544 GACTMLYEYFE*LRPYPKPYTTSPV*NRYVLPG*PREGSALMFISFIGTAVKDSGYQVMG 365
Query: 760 SFPPGLYSPKRISGRTCPPTSPGYPSQRMLAIRG 861
+FPPGLYSPKRISGRTCPPTSPGYP R LAI G
Sbjct: 364 NFPPGLYSPKRISGRTCPPTSPGYPIHRTLAILG 263
Score = 186 bits (400), Expect = 2e-046
Identities = 69/75 (92%), Positives = 74/75 (98%)
Frame = -1 / +3
Query: 863 DPRIASILWLGYPGEVGGQVLPEILFGEYNPGGKLPITWYPESFTAIPMTDMNMRADPSR 684
DPRIAS+LW+GYPGEVGGQVLPEILFGEYNPGGKLP+TWYPESFTA+PM DMNMRADPSR
Sbjct: 261 DPRIASVLWIGYPGEVGGQVLPEILFGEYNPGGKLPMTWYPESFTAVPMNDMNMRADPSR 440
Query: 683 GYPGRTYRFYTGDVV 639
GYPGRTYRFYTG+VV
Sbjct: 441 GYPGRTYRFYTGEVV 485
Score = 116 bits (247), Expect = 2e-025
Identities = 53/94 (56%), Positives = 64/94 (68%)
Frame = -3 / +2
Query: 861 SANRKHSLARISWRGWWTSPSRNSFWRVQPRRKAAYNLVS*ILYCYSHD*YEHES*SFTR 682
S N K + IS WWTS SRNSF RVQ RRK A++LV IL+ S++*YEHES FTR
Sbjct: 263 SKNCKCPVDWISRGSWWTSSSRNSFRRVQSRRKIAHDLVPRILHRGSNE*YEHESRPFTR 442
Query: 681 LPWENISILHWRCSVWLWIWFKLLQIFI*HLLGS 580
LPW+NIS+LH R VW WI +LL++ I H S
Sbjct: 443 LPWKNISVLHRRSCVWFWIRSELLEVLIQHRTSS 544
Score = 108 bits (231), Expect = 4e-023
Identities = 52/91 (57%), Positives = 64/91 (70%)
Frame = +2 / -2
Query: 590 RCYMNIWSNLNHIQSHTLHLQCKIDMFSQGSLVKDQLSCSYQSWE*Q*RIQDTKL*AAFL 769
RC M+ S+ + IQ+HT L+CK DMF QGS VK +LSCSY S E +*RI+ TK A FL
Sbjct: 534 RCCMSTSSSSDRIQNHTQLLRCKTDMFFQGSRVKGRLSCSYHSLEPR*RIRGTKSWAIFL 355
Query: 770 LGCTLQKEFLEGLVHQPRQDIRAKECLRFAD 862
L CTL+KEFLE LVHQ DI++ L+F D
Sbjct: 354 LDCTLRKEFLEELVHQLPLDIQSTGHLQFLD 262
>gb|BM372365.2|BM372365 EBro03_SQ004_M03_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ004_M03 5', mRNA sequence
Length = 546
Score = 196 bits (423), Expect = 1e-049
Identities = 82/100 (82%), Positives = 87/100 (87%)
Frame = +1 / -2
Query: 562 DTVIFFGAKEMLYEYLE*LKPYPKPYTTSPV*NRYVLPG*PREGSALMFISVMGIAVKDS 741
D +I A MLYEY E*L+PYPKPYTTSPV*NRYVLPG*PREGSALMFIS +G AVKDS
Sbjct: 527 DRLILCEACTMLYEYFE*LRPYPKPYTTSPV*NRYVLPG*PREGSALMFISFIGTAVKDS 348
Query: 742 GYQVIGSFPPGLYSPKRISGRTCPPTSPGYPSQRMLAIRG 861
GYQV+G+FPPGLYSPKRISGRTCPPTSPGYP R LAI G
Sbjct: 347 GYQVMGNFPPGLYSPKRISGRTCPPTSPGYPIHRTLAILG 228
Score = 186 bits (400), Expect = 2e-046
Identities = 69/75 (92%), Positives = 74/75 (98%)
Frame = -1 / +1
Query: 863 DPRIASILWLGYPGEVGGQVLPEILFGEYNPGGKLPITWYPESFTAIPMTDMNMRADPSR 684
DPRIAS+LW+GYPGEVGGQVLPEILFGEYNPGGKLP+TWYPESFTA+PM DMNMRADPSR
Sbjct: 226 DPRIASVLWIGYPGEVGGQVLPEILFGEYNPGGKLPMTWYPESFTAVPMNDMNMRADPSR 405
Query: 683 GYPGRTYRFYTGDVV 639
GYPGRTYRFYTG+VV
Sbjct: 406 GYPGRTYRFYTGEVV 450
Score = 115 bits (246), Expect = 3e-025
Identities = 52/90 (57%), Positives = 63/90 (70%)
Frame = -3 / +3
Query: 861 SANRKHSLARISWRGWWTSPSRNSFWRVQPRRKAAYNLVS*ILYCYSHD*YEHES*SFTR 682
S N K + IS WWTS SRNSF RVQ RRK A++LV IL+ S++*YEHES FTR
Sbjct: 228 SKNCKCPVDWISRGSWWTSSSRNSFRRVQSRRKIAHDLVPRILHRGSNE*YEHESRPFTR 407
Query: 681 LPWENISILHWRCSVWLWIWFKLLQIFI*H 592
LPW+NIS+LH R VW WI +LL++ I H
Sbjct: 408 LPWKNISVLHRRSCVWFWIRSELLEVLIQH 497
Score = 108 bits (231), Expect = 4e-023
Identities = 52/91 (57%), Positives = 64/91 (70%)
Frame = +2 / -3
Query: 590 RCYMNIWSNLNHIQSHTLHLQCKIDMFSQGSLVKDQLSCSYQSWE*Q*RIQDTKL*AAFL 769
RC M+ S+ + IQ+HT L+CK DMF QGS VK +LSCSY S E +*RI+ TK A FL
Sbjct: 499 RCCMSTSSSSDRIQNHTQLLRCKTDMFFQGSRVKGRLSCSYHSLEPR*RIRGTKSWAIFL 320
Query: 770 LGCTLQKEFLEGLVHQPRQDIRAKECLRFAD 862
L CTL+KEFLE LVHQ DI++ L+F D
Sbjct: 319 LDCTLRKEFLEELVHQLPLDIQSTGHLQFLD 227
>gb|CD663740.1|CD663740 UCRHV18_06ca01_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_06ca01, mRNA sequence
Length = 489
Score = 188 bits (405), Expect = 4e-047
Identities = 80/104 (76%), Positives = 93/104 (89%)
Frame = -1 / -3
Query: 491 IASCEALVFSVHVAVSNHGSMDGSHAVLLFARSKSSVPGFPIKQLVGFERVHTAAGSASS 312
IASCE+LVFSVH++V+N G+MDGSHAVLLFARSKSSVPGFP+KQLVGFERV+TAAGS+ +
Sbjct: 481 IASCESLVFSVHISVANDGAMDGSHAVLLFARSKSSVPGFPLKQLVGFERVYTAAGSSKN 302
Query: 311 VEITVDPCKHMSAANPEGKRVLLLGAHVLTVGDEEFELSIEL*Q 180
V ITVDPCK+MSAAN EG+RVLLLG+H L VGDE E IE *+
Sbjct: 301 VAITVDPCKYMSAANTEGRRVLLLGSHHLMVGDEVHEFVIEA*R 170
Score = 146 bits (313), Expect = 2e-034
Identities = 68/92 (73%), Positives = 71/92 (77%)
Frame = +1 / +3
Query: 217 PTVRTWAPNRSTLLPSGLAALICLQGSTVISTLDALPAAVWTRSKPTSCFIGKPGTLDFD 396
PT+R W P STLLPS LAALI LQGSTVI+T LPAAV TRSKPTSCF GKPGTLDFD
Sbjct: 207 PTMR*WDPRSSTLLPSVLAALIYLQGSTVIATFFELPAAV*TRSKPTSCFRGKPGTLDFD 386
Query: 397 LANRRTA*LPSMLP*FETAT*TENTRASHDAI 492
LAN +TA LPSM P T TENTR SHDAI
Sbjct: 387 LANSKTAWLPSMAPSLATEMWTENTRDSHDAI 482
>gb|BF628954.2|BF628954 HVSMEb0009F03f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0009F03f, mRNA sequence
Length = 718
Score = 143 bits (307), Expect(2) = 1e-045
Identities = 49/75 (65%), Positives = 62/75 (82%)
Frame = -1 / +2
Query: 863 DPRIASILWLGYPGEVGGQVLPEILFGEYNPGGKLPITWYPESFTAIPMTDMNMRADPSR 684
+P+I +I+W GYPG+ GG + ++LFG++NPGG+LP+TWYP FTA+PMTDM MRADPS
Sbjct: 107 NPKIGAIVWAGYPGQAGGISISQVLFGDHNPGGRLPVTWYPNEFTAVPMTDMRMRADPST 286
Query: 683 GYPGRTYRFYTGDVV 639
GYPGRTYRFY G V
Sbjct: 287 GYPGRTYRFYKGKTV 331
Score = 62.5 bits (130), Expect(2) = 1e-045
Identities = 31/72 (43%), Positives = 40/72 (55%)
Frame = -1 / +2
Query: 485 SCEALVFSVHVAVSNHGSMDGSHAVLLFARSKSSVPGFPIKQLVGFERVHTAAGSASSVE 306
+C+ L F V V NH MDG H VLLF R ++ G QL+GF+ VH A +A+ VE
Sbjct: 494 ACDRLRFPAVVRVHNHRPMDGRHPVLLFLRWPNATDGRSAIQLIGFQSVHLRADNAAHVE 673
Query: 305 ITVDPCKHMSAA 270
V K +S A
Sbjct: 674 F*VSLWKPLSRA 709
>gb|CA013000.1|CA013000 HT07B15r HT Hordeum vulgare subsp. vulgare cDNA clone HT07B15
5-PRIME, mRNA sequence
Length = 501
Score = 162 bits (348), Expect(2) = 5e-045
Identities = 69/92 (75%), Positives = 81/92 (88%)
Frame = -1 / +2
Query: 455 VAVSNHGSMDGSHAVLLFARSKSSVPGFPIKQLVGFERVHTAAGSASSVEITVDPCKHMS 276
++V+N G+MDGSHAVLLFARSKSSVPGFP+KQLVGFERV+TAAGS+ +V ITVDPCK+MS
Sbjct: 71 ISVANDGAMDGSHAVLLFARSKSSVPGFPLKQLVGFERVYTAAGSSKNVAITVDPCKYMS 250
Query: 275 AANPEGKRVLLLGAHVLTVGDEEFELSIEL*Q 180
AAN EG+RVLLLG+H L VGDE E IE *+
Sbjct: 251 AANTEGRRVLLLGSHHLMVGDEVHEFVIEA*R 346
Score = 126 bits (269), Expect(2) = 5e-034
Identities = 57/74 (77%), Positives = 60/74 (81%)
Frame = +1 / -1
Query: 217 PTVRTWAPNRSTLLPSGLAALICLQGSTVISTLDALPAAVWTRSKPTSCFIGKPGTLDFD 396
PT+R W P STLLPS LAALI LQGSTVI+T LPAAV TRSKPTSCF GKPGTLDFD
Sbjct: 309 PTMR*WDPRSSTLLPSVLAALIYLQGSTVIATFFELPAAV*TRSKPTSCFRGKPGTLDFD 130
Query: 397 LANRRTA*LPSMLP 438
LAN +TA LPSM P
Sbjct: 129 LANSKTAWLPSMAP 88
Score = 39.1 bits (79), Expect(2) = 5e-045
Identities = 16/21 (76%), Positives = 18/21 (85%)
Frame = -1 / +3
Query: 521 DGLDFVKTEDIASCEALVFSV 459
+GLD V EDIASCE+LVFSV
Sbjct: 6 EGLDCVXVEDIASCESLVFSV 68
Score = 38.6 bits (78), Expect(2) = 5e-034
Identities = 15/21 (71%), Positives = 19/21 (90%)
Frame = +1 / -3
Query: 460 TENTRASHDAISSVFTKSSPS 522
TENTR SHDA+SS +T+S+PS
Sbjct: 67 TENTRDSHDAMSSTWTQSNPS 5
>gb|BQ760249.1|BQ760249 EBpi07_SQ003_M14_R pistil, 12 DPA, no treatment, cv Optic, EBpi07
Hordeum vulgare subsp. vulgare cDNA clone
EBpi07_SQ003_M14 5', mRNA sequence
Length = 518
Score = 144 bits (310), Expect(2) = 2e-040
Identities = 49/75 (65%), Positives = 63/75 (84%)
Frame = -1 / +1
Query: 863 DPRIASILWLGYPGEVGGQVLPEILFGEYNPGGKLPITWYPESFTAIPMTDMNMRADPSR 684
+P+I +I+W GYPG+ GG + ++LFG++NPGG+LP+TWYP+ FTA+PMTDM MRADPS
Sbjct: 19 NPKIGAIVWAGYPGQAGGIAIAQVLFGDHNPGGRLPVTWYPKEFTAVPMTDMRMRADPST 198
Query: 683 GYPGRTYRFYTGDVV 639
GYPGRTYRFY G V
Sbjct: 199 GYPGRTYRFYKGKTV 243
Score = 105 bits (224), Expect = 3e-022
Identities = 49/88 (55%), Positives = 58/88 (65%)
Frame = +1 / -1
Query: 598 YEYLE*LKPYPKPYTTSPV*NRYVLPG*PREGSALMFISVMGIAVKDSGYQVIGSFPPGL 777
+EYLE*L+P PK YT P+*N V PG*P +GSA + +SV+G AV GY V GS PPGL
Sbjct: 284 WEYLE*LRP*PKLYTVLPL*NL*VRPG*PVDGSARIRMSVIGTAVNSFGYHVTGSLPPGL 105
Query: 778 YSPKRISGRTCPPTSPGYPSQRMLAIRG 861
+SPKR PP PG P+Q M I G
Sbjct: 104 WSPKRTWAMAMPPAWPG*PAQTMAPILG 21
Score = 43.2 bits (88), Expect(2) = 2e-040
Identities = 18/37 (48%), Positives = 22/37 (59%)
Frame = -1 / +1
Query: 485 SCEALVFSVHVAVSNHGSMDGSHAVLLFARSKSSVPG 375
+C+ L F V V NHG MDG H VLLF R ++ G
Sbjct: 406 ACDRLRFPAVVRVXNHGPMDGRHPVLLFLRWPNATDG 516
>gb|BQ468512.1|BQ468512 HM01H14T HM Hordeum vulgare subsp. vulgare cDNA clone HM01H14
5-PRIME, mRNA sequence
Length = 600
Score = 144 bits (310), Expect(2) = 7e-040
Identities = 49/75 (65%), Positives = 63/75 (84%)
Frame = -1 / +1
Query: 863 DPRIASILWLGYPGEVGGQVLPEILFGEYNPGGKLPITWYPESFTAIPMTDMNMRADPSR 684
+P+I +I+W GYPG+ GG + ++LFG++NPGG+LP+TWYP+ FTA+PMTDM MRADPS
Sbjct: 118 NPKIGAIVWAGYPGQAGGIAIAQVLFGDHNPGGRLPVTWYPKEFTAVPMTDMRMRADPST 297
Query: 683 GYPGRTYRFYTGDVV 639
GYPGRTYRFY G V
Sbjct: 298 GYPGRTYRFYKGKTV 342
Score = 105 bits (224), Expect = 3e-022
Identities = 49/88 (55%), Positives = 58/88 (65%)
Frame = +1 / -2
Query: 598 YEYLE*LKPYPKPYTTSPV*NRYVLPG*PREGSALMFISVMGIAVKDSGYQVIGSFPPGL 777
+EYLE*L+P PK YT P+*N V PG*P +GSA + +SV+G AV GY V GS PPGL
Sbjct: 383 WEYLE*LRP*PKLYTVLPL*NL*VRPG*PVDGSARIRMSVIGTAVNSFGYHVTGSLPPGL 204
Query: 778 YSPKRISGRTCPPTSPGYPSQRMLAIRG 861
+SPKR PP PG P+Q M I G
Sbjct: 203 WSPKRTWAMAMPPAWPG*PAQTMAPILG 120
Score = 41.4 bits (84), Expect(2) = 7e-040
Identities = 17/30 (56%), Positives = 19/30 (63%)
Frame = -1 / +1
Query: 485 SCEALVFSVHVAVSNHGSMDGSHAVLLFAR 396
+C+ L F V V NHG MDG H VLLF R
Sbjct: 505 ACDRLRFPAVVRVHNHGPMDGRHPVLLFLR 594
>gb|BE194812.3|BE194812 HVSMEh0087A14f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0087A14f, mRNA sequence
Length = 652
Score = 86.8 bits (183), Expect(4) = 2e-039
Identities = 32/36 (88%), Positives = 34/36 (94%)
Frame = -1 / +3
Query: 863 DPRIASILWLGYPGEVGGQVLPEILFGEYNPGGKLP 756
DPRIAS+LW+GYPGEVGGQVLPEILFGEYNP GK P
Sbjct: 285 DPRIASVLWIGYPGEVGGQVLPEILFGEYNPXGKCP 392
Score = 73.9 bits (155), Expect(4) = 3e-033
Identities = 29/35 (82%), Positives = 29/35 (82%)
Frame = +1 / -1
Query: 757 GSFPPGLYSPKRISGRTCPPTSPGYPSQRMLAIRG 861
G FP GLYSPKRISGRTCPPTSPGYP R LAI G
Sbjct: 391 GHFPXGLYSPKRISGRTCPPTSPGYPIHRTLAILG 287
Score = 65.2 bits (136), Expect(4) = 2e-039
Identities = 23/29 (79%), Positives = 26/29 (89%)
Frame = -1 / +2
Query: 764 KLPITWYPESFTAIPMTDMNMRADPSRGY 678
K+P+TWYPESFTA+PM DMNMRAD RGY
Sbjct: 383 KMPMTWYPESFTAVPMNDMNMRADLXRGY 469
Score = 49.6 bits (102), Expect(4) = 3e-033
Identities = 22/29 (75%), Positives = 24/29 (82%)
Frame = +1 / -2
Query: 679 *PREGSALMFISVMGIAVKDSGYQVIGSF 765
*PR SALMFIS +G AVKDSGYQV+G F
Sbjct: 468 *PRXRSALMFISFIGTAVKDSGYQVMGIF 382
Score = 45.1 bits (92), Expect(4) = 3e-033
Identities = 20/32 (62%), Positives = 23/32 (71%)
Frame = +1 / -1
Query: 562 DTVIFFGAKEMLYEYLE*LKPYPKPYTTSPV* 657
D++I A MLYEY E*L+ YP PYT SPV*
Sbjct: 583 DSLISCEACTMLYEYFE*LRRYPNPYTPSPV* 488
Score = 35.9 bits (72), Expect(4) = 2e-039
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = -1 / +3
Query: 551 ISRKPAYTRRDGLDF 507
ISRKPAYTRRDG D+
Sbjct: 606 ISRKPAYTRRDGFDY 650
Score = 30.9 bits (61), Expect(4) = 2e-039
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -3 / +2
Query: 657 LHWRCSVWLWIWFKLLQIFI*HLLGSEED 571
LH R VW+WI +LL++ I H G D
Sbjct: 488 LHRRRCVWVWIPSELLEVLIQHRTGLTGD 574
Score = 29.0 bits (57), Expect(4) = 3e-033
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +1 / -1
Query: 511 SSPSLLVYAGFLLI 552
S+PSL VYAGFLLI
Sbjct: 646 SNPSLRVYAGFLLI 605
>gb|BI960413.1|BI960413 HVSMEn0024I08f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0024I08f, mRNA sequence
Length = 699
Score = 144 bits (310), Expect = 5e-034
Identities = 49/75 (65%), Positives = 63/75 (84%)
Frame = -1 / +3
Query: 863 DPRIASILWLGYPGEVGGQVLPEILFGEYNPGGKLPITWYPESFTAIPMTDMNMRADPSR 684
+P+I +I+W GYPG+ GG + ++LFG++NPGG+LP+TWYP+ FTA+PMTDM MRADPS
Sbjct: 195 NPKIGAIVWAGYPGQAGGIAIAQVLFGDHNPGGRLPVTWYPKEFTAVPMTDMRMRADPST 374
Query: 683 GYPGRTYRFYTGDVV 639
GYPGRTYRFY G V
Sbjct: 375 GYPGRTYRFYKGKTV 419
Score = 105 bits (224), Expect = 3e-022
Identities = 49/88 (55%), Positives = 58/88 (65%)
Frame = +1 / -3
Query: 598 YEYLE*LKPYPKPYTTSPV*NRYVLPG*PREGSALMFISVMGIAVKDSGYQVIGSFPPGL 777
+EYLE*L+P PK YT P+*N V PG*P +GSA + +SV+G AV GY V GS PPGL
Sbjct: 460 WEYLE*LRP*PKLYTVLPL*NL*VRPG*PVDGSARIRMSVIGTAVNSFGYHVTGSLPPGL 281
Query: 778 YSPKRISGRTCPPTSPGYPSQRMLAIRG 861
+SPKR PP PG P+Q M I G
Sbjct: 280 WSPKRTWAMAMPPAWPG*PAQTMAPILG 197
>gb|BQ468849.1|BQ468849 HM02I18r HM Hordeum vulgare subsp. vulgare cDNA clone HM02I18
5-PRIME, mRNA sequence
Length = 607
Score = 144 bits (310), Expect = 5e-034
Identities = 49/75 (65%), Positives = 63/75 (84%)
Frame = -1 / +1
Query: 863 DPRIASILWLGYPGEVGGQVLPEILFGEYNPGGKLPITWYPESFTAIPMTDMNMRADPSR 684
+P+I +I+W GYPG+ GG + ++LFG++NPGG+LP+TWYP+ FTA+PMTDM MRADPS
Sbjct: 238 NPKIGAIVWAGYPGQAGGIAIAQVLFGDHNPGGRLPVTWYPKEFTAVPMTDMRMRADPST 417
Query: 683 GYPGRTYRFYTGDVV 639
GYPGRTYRFY G V
Sbjct: 418 GYPGRTYRFYKGKTV 462
Score = 105 bits (224), Expect = 3e-022
Identities = 49/88 (55%), Positives = 58/88 (65%)
Frame = +1 / -3
Query: 598 YEYLE*LKPYPKPYTTSPV*NRYVLPG*PREGSALMFISVMGIAVKDSGYQVIGSFPPGL 777
+EYLE*L+P PK YT P+*N V PG*P +GSA + +SV+G AV GY V GS PPGL
Sbjct: 503 WEYLE*LRP*PKLYTVLPL*NL*VRPG*PVDGSARIRMSVIGTAVNSFGYHVTGSLPPGL 324
Query: 778 YSPKRISGRTCPPTSPGYPSQRMLAIRG 861
+SPKR PP PG P+Q M I G
Sbjct: 323 WSPKRTWAMAMPPAWPG*PAQTMAPILG 240
>gb|BQ460471.1|BQ460471 HA09H11r HA Hordeum vulgare subsp. vulgare cDNA clone HA09H11
5-PRIME, mRNA sequence
Length = 576
Score = 117 bits (251), Expect(2) = 7e-034
Identities = 50/103 (48%), Positives = 65/103 (63%)
Frame = -1 / +2
Query: 485 SCEALVFSVHVAVSNHGSMDGSHAVLLFARSKSSVPGFPIKQLVGFERVHTAAGSASSVE 306
+C+ L F V V NHG MDG H VLLF R ++ G P QL+GF+ VH A A+ VE
Sbjct: 233 ACDRLRFPAVVRVQNHGPMDGRHPVLLFLRWPNATDGRPASQLIGFQSVHLRADEAAHVE 412
Query: 305 ITVDPCKHMSAANPEGKRVLLLGAHVLTVGDEEFELSIEL*QG 177
V PCKH+S A +G++V+ G+H + VGD+EFELS * G
Sbjct: 413 FEVSPCKHLSRAAEDGRKVIDQGSHFVRVGDDEFELSFMA*AG 541
Score = 48.3 bits (99), Expect(2) = 7e-034
Identities = 18/22 (81%), Positives = 18/22 (81%)
Frame = -1 / +2
Query: 704 MRADPSRGYPGRTYRFYTGDVV 639
MRADPS GYPGRTYRFY G V
Sbjct: 5 MRADPSTGYPGRTYRFYKGKTV 70
>gb|CA021686.1|CA021686 HZ40M22r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ40M22
5-PRIME, mRNA sequence
Length = 467
Score = 143 bits (307), Expect = 1e-033
Identities = 48/75 (64%), Positives = 62/75 (82%)
Frame = -1 / +2
Query: 863 DPRIASILWLGYPGEVGGQVLPEILFGEYNPGGKLPITWYPESFTAIPMTDMNMRADPSR 684
+P+I +ILW GYPG+ GG + +LFG++NPGG+LP+TWYPE FT +PMTDM MRADP+
Sbjct: 119 NPKIGAILWAGYPGQAGGLAIARVLFGDHNPGGRLPVTWYPEEFTKVPMTDMRMRADPAT 298
Query: 683 GYPGRTYRFYTGDVV 639
GYPGR+YRFY G+ V
Sbjct: 299 GYPGRSYRFYQGETV 343
Score = 100 bits (214), Expect = 8e-021
Identities = 49/87 (56%), Positives = 55/87 (63%)
Frame = +1 / -3
Query: 601 EYLE*LKPYPKPYTTSPV*NRYVLPG*PREGSALMFISVMGIAVKDSGYQVIGSFPPGLY 780
E LE*L+P P T SP * R + PG*P GSA + +SVMG V SGYQV GS PPGL+
Sbjct: 381 E*LE*LRP*PNL*TVSPW*KR*LRPG*PVAGSARIRMSVMGTLVNSSGYQVTGSLPPGLW 202
Query: 781 SPKRISGRTCPPTSPGYPSQRMLAIRG 861
SPK PP PGYP+QRM I G
Sbjct: 201 SPKSTLAMASPPAWPGYPAQRMAPILG 121
>gb|CA022183.1|CA022183 HZ42G07r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ42G07
5-PRIME, mRNA sequence
Length = 606
Score = 143 bits (307), Expect = 1e-033
Identities = 48/75 (64%), Positives = 62/75 (82%)
Frame = -1 / +1
Query: 863 DPRIASILWLGYPGEVGGQVLPEILFGEYNPGGKLPITWYPESFTAIPMTDMNMRADPSR 684
+P+I +ILW GYPG+ GG + +LFG++NPGG+LP+TWYPE FT +PMTDM MRADP+
Sbjct: 199 NPKIGAILWAGYPGQAGGLAIARVLFGDHNPGGRLPVTWYPEEFTKVPMTDMRMRADPAT 378
Query: 683 GYPGRTYRFYTGDVV 639
GYPGR+YRFY G+ V
Sbjct: 379 GYPGRSYRFYQGETV 423
Score = 102 bits (217), Expect = 3e-021
Identities = 55/124 (44%), Positives = 69/124 (55%)
Frame = +1 / -2
Query: 490 ISSVFTKSSPSLLVYAGFLLIMPNDTVIFFGAKEMLYEYLE*LKPYPKPYTTSPV*NRYV 669
I S + ++P G +L + +V+ + E LE*L+P P T SP * R +
Sbjct: 572 ICSTW*LATPPSSAGVGIVLRPASKSVLGVPDESSRRE*LE*LRP*PNL*TVSPW*KR*L 393
Query: 670 LPG*PREGSALMFISVMGIAVKDSGYQVIGSFPPGLYSPKRISGRTCPPTSPGYPSQRML 849
PG*P GSA + +SVMG V SGYQV GS PPGL+SPK PP PGYP+QRM
Sbjct: 392 RPG*PVAGSARIRMSVMGTLVNSSGYQVTGSLPPGLWSPKSTLAMASPPAWPGYPAQRMA 213
Query: 850 AIRG 861
I G
Sbjct: 212 PILG 201
>gb|AV925753.1|AV925753 AV925753 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd25k17 5', mRNA sequence
Length = 582
Score = 109 bits (232), Expect(2) = 2e-033
Identities = 44/98 (44%), Positives = 60/98 (61%)
Frame = -1 / +3
Query: 482 CEALVFSVHVAVSNHGSMDGSHAVLLFARSKSSVPGFPIKQLVGFERVHTAAGSASSVEI 303
CE L F V V NHG +DG H+VL+F R ++ G P+ QL+GF H AG +S+
Sbjct: 249 CEQLKFPAVVEVQNHGPLDGKHSVLMFLRWPNATGGRPVSQLIGFRTQHLKAGEKASLTF 428
Query: 302 TVDPCKHMSAANPEGKRVLLLGAHVLTVGDEEFELSIE 189
V PC+H S A +GK+V+ G+H L VG +E E+S E
Sbjct: 429 DVRPCEHFSRAREDGKKVIDAGSHFLKVGKDEHEISFE 542
Score = 55.6 bits (115), Expect(2) = 2e-033
Identities = 20/27 (74%), Positives = 23/27 (85%)
Frame = -1 / +3
Query: 719 MTDMNMRADPSRGYPGRTYRFYTGDVV 639
MTDM MRADP+ GYPGR+YRFY G+ V
Sbjct: 3 MTDMRMRADPATGYPGRSYRFYQGNAV 83
>gb|BU982554.1|BU982554 HA26O10r HA Hordeum vulgare subsp. vulgare cDNA clone HA26O10
5-PRIME, mRNA sequence
Length = 609
Score = 102 bits (218), Expect(2) = 5e-033
Identities = 43/98 (43%), Positives = 59/98 (60%)
Frame = -1 / +1
Query: 482 CEALVFSVHVAVSNHGSMDGSHAVLLFARSKSSVPGFPIKQLVGFERVHTAAGSASSVEI 303
CE L F V V NHG MDG H+VLLF R ++ G P QLVGF+ H +G +S+
Sbjct: 277 CEQLKFPAVVEVENHGPMDGKHSVLLFLRWPNATGGRPASQLVGFQSQHLESGEKASLTF 456
Query: 302 TVDPCKHMSAANPEGKRVLLLGAHVLTVGDEEFELSIE 189
V PC+H+S A +GK V+ +H L V ++E E+S +
Sbjct: 457 DVSPCEHLSRAREDGKMVIDRASHFLFVDEDEAEISFD 570
Score = 60.6 bits (126), Expect(2) = 5e-033
Identities = 22/34 (64%), Positives = 25/34 (73%)
Frame = -1 / +1
Query: 740 ESFTAIPMTDMNMRADPSRGYPGRTYRFYTGDVV 639
E + +PMTDM MRADP GYPGR+YRFY G V
Sbjct: 13 EEYMRVPMTDMRMRADPVTGYPGRSYRFYRGPTV 114
>gb|BI953145.1|BI953145 HVSMEm0011E01f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0011E01f, mRNA sequence
Length = 831
Score = 140 bits (300), Expect = 1e-032
Identities = 47/75 (62%), Positives = 61/75 (81%)
Frame = -1 / +1
Query: 863 DPRIASILWLGYPGEVGGQVLPEILFGEYNPGGKLPITWYPESFTAIPMTDMNMRADPSR 684
+P+I +ILW GYPG+ GG + +LFG++NP G+LP+TWYPE FT +PMTDM MRADP+
Sbjct: 43 NPKIGAILWAGYPGQAGGLAIARVLFGDHNPSGRLPVTWYPEEFTKVPMTDMRMRADPAT 222
Query: 683 GYPGRTYRFYTGDVV 639
GYPGR+YRFY G+ V
Sbjct: 223 GYPGRSYRFYQGNAV 267
>gb|BM372495.2|BM372495 EBpi05_SQ003_C02_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ003_C02 5', mRNA sequence
Length = 418
Score = 140 bits (300), Expect = 1e-032
Identities = 48/75 (64%), Positives = 62/75 (82%)
Frame = -1 / +1
Query: 863 DPRIASILWLGYPGEVGGQVLPEILFGEYNPGGKLPITWYPESFTAIPMTDMNMRADPSR 684
+P+I +I+W GYPG+ GG + ++LFG++NPGG+LP+TWYP+ FTA+PMTDM MRAD S
Sbjct: 79 NPKIGAIVWAGYPGQAGGIAIAQVLFGDHNPGGRLPVTWYPKEFTAVPMTDMRMRADLST 258
Query: 683 GYPGRTYRFYTGDVV 639
GYPGRTYRFY G V
Sbjct: 259 GYPGRTYRFYKGKTV 303
Score = 101 bits (216), Expect = 4e-021
Identities = 48/88 (54%), Positives = 57/88 (64%)
Frame = +1 / -3
Query: 598 YEYLE*LKPYPKPYTTSPV*NRYVLPG*PREGSALMFISVMGIAVKDSGYQVIGSFPPGL 777
+EYLE*L+P PK YT P+*N V PG*P + SA + +SV+G AV GY V GS PPGL
Sbjct: 344 WEYLE*LRP*PKLYTVLPL*NL*VRPG*PVDRSARIRMSVIGTAVNSFGYHVTGSLPPGL 165
Query: 778 YSPKRISGRTCPPTSPGYPSQRMLAIRG 861
+SPKR PP PG P+Q M I G
Sbjct: 164 WSPKRTWAMAMPPAWPG*PAQTMAPILG 81
>gb|BM372498.2|BM372498 EBpi05_SQ003_C05_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ003_C05 5', mRNA sequence
Length = 505
Score = 140 bits (300), Expect = 1e-032
Identities = 48/75 (64%), Positives = 62/75 (82%)
Frame = -1 / +1
Query: 863 DPRIASILWLGYPGEVGGQVLPEILFGEYNPGGKLPITWYPESFTAIPMTDMNMRADPSR 684
+P+I +I+W GYPG+ GG + ++LFG++NPGG+LP+TWYP+ FTA+PMTDM MRAD S
Sbjct: 79 NPKIGAIVWAGYPGQAGGIAIAQVLFGDHNPGGRLPVTWYPKEFTAVPMTDMRMRADLST 258
Query: 683 GYPGRTYRFYTGDVV 639
GYPGRTYRFY G V
Sbjct: 259 GYPGRTYRFYKGKTV 303
Score = 101 bits (216), Expect = 4e-021
Identities = 48/88 (54%), Positives = 57/88 (64%)
Frame = +1 / -3
Query: 598 YEYLE*LKPYPKPYTTSPV*NRYVLPG*PREGSALMFISVMGIAVKDSGYQVIGSFPPGL 777
+EYLE*L+P PK YT P+*N V PG*P + SA + +SV+G AV GY V GS PPGL
Sbjct: 344 WEYLE*LRP*PKLYTVLPL*NL*VRPG*PVDRSARIRMSVIGTAVNSFGYHVTGSLPPGL 165
Query: 778 YSPKRISGRTCPPTSPGYPSQRMLAIRG 861
+SPKR PP PG P+Q M I G
Sbjct: 164 WSPKRTWAMAMPPAWPG*PAQTMAPILG 81
>gb|BM372479.2|BM372479 EBpi05_SQ003_B09_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ003_B09 5', mRNA sequence
Length = 418
Score = 140 bits (300), Expect = 1e-032
Identities = 48/75 (64%), Positives = 62/75 (82%)
Frame = -1 / +1
Query: 863 DPRIASILWLGYPGEVGGQVLPEILFGEYNPGGKLPITWYPESFTAIPMTDMNMRADPSR 684
+P+I +I+W GYPG+ GG + ++LFG++NPGG+LP+TWYP+ FTA+PMTDM MRAD S
Sbjct: 79 NPKIGAIVWAGYPGQAGGIAIAQVLFGDHNPGGRLPVTWYPKEFTAVPMTDMRMRADLST 258
Query: 683 GYPGRTYRFYTGDVV 639
GYPGRTYRFY G V
Sbjct: 259 GYPGRTYRFYKGKTV 303
Score = 101 bits (216), Expect = 4e-021
Identities = 48/88 (54%), Positives = 57/88 (64%)
Frame = +1 / -3
Query: 598 YEYLE*LKPYPKPYTTSPV*NRYVLPG*PREGSALMFISVMGIAVKDSGYQVIGSFPPGL 777
+EYLE*L+P PK YT P+*N V PG*P + SA + +SV+G AV GY V GS PPGL
Sbjct: 344 WEYLE*LRP*PKLYTVLPL*NL*VRPG*PVDRSARIRMSVIGTAVNSFGYHVTGSLPPGL 165
Query: 778 YSPKRISGRTCPPTSPGYPSQRMLAIRG 861
+SPKR PP PG P+Q M I G
Sbjct: 164 WSPKRTWAMAMPPAWPG*PAQTMAPILG 81
>gb|BM372501.2|BM372501 EBpi05_SQ003_C08_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ003_C08 5', mRNA sequence
Length = 475
Score = 140 bits (300), Expect = 1e-032
Identities = 48/75 (64%), Positives = 62/75 (82%)
Frame = -1 / +1
Query: 863 DPRIASILWLGYPGEVGGQVLPEILFGEYNPGGKLPITWYPESFTAIPMTDMNMRADPSR 684
+P+I +I+W GYPG+ GG + ++LFG++NPGG+LP+TWYP+ FTA+PMTDM MRAD S
Sbjct: 79 NPKIGAIVWAGYPGQAGGIAIAQVLFGDHNPGGRLPVTWYPKEFTAVPMTDMRMRADLST 258
Query: 683 GYPGRTYRFYTGDVV 639
GYPGRTYRFY G V
Sbjct: 259 GYPGRTYRFYKGKTV 303
Score = 101 bits (216), Expect = 4e-021
Identities = 48/88 (54%), Positives = 57/88 (64%)
Frame = +1 / -3
Query: 598 YEYLE*LKPYPKPYTTSPV*NRYVLPG*PREGSALMFISVMGIAVKDSGYQVIGSFPPGL 777
+EYLE*L+P PK YT P+*N V PG*P + SA + +SV+G AV GY V GS PPGL
Sbjct: 344 WEYLE*LRP*PKLYTVLPL*NL*VRPG*PVDRSARIRMSVIGTAVNSFGYHVTGSLPPGL 165
Query: 778 YSPKRISGRTCPPTSPGYPSQRMLAIRG 861
+SPKR PP PG P+Q M I G
Sbjct: 164 WSPKRTWAMAMPPAWPG*PAQTMAPILG 81
>gb|BQ471891.1|BQ471891 HV03M17r HV Hordeum vulgare subsp. vulgare cDNA clone HV03M17
5-PRIME, mRNA sequence
Length = 419
Score = 81.3 bits (171), Expect(2) = 1e-026
Identities = 27/42 (64%), Positives = 35/42 (83%)
Frame = -1 / +2
Query: 857 RIASILWLGYPGEVGGQVLPEILFGEYNPGGKLPITWYPESF 732
+IA+ILW+GYPGE GG L +ILFG +NP G+LP+TWYP S+
Sbjct: 146 KIAAILWVGYPGEAGGAALADILFGSHNPSGRLPVTWYPASY 271
Score = 58.8 bits (122), Expect(2) = 1e-026
Identities = 22/29 (75%), Positives = 23/29 (79%)
Frame = -1 / +2
Query: 725 IPMTDMNMRADPSRGYPGRTYRFYTGDVV 639
+ MTDM MR D S GYPGRTYRFYTGD V
Sbjct: 281 VTMTDMRMRPDTSTGYPGRTYRFYTGDTV 367
>gb|BI956900.1|BI956900 HVSMEn0005O20f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0005O20f, mRNA sequence
Length = 866
Score = 120 bits (256), Expect = 1e-026
Identities = 41/72 (56%), Positives = 54/72 (75%)
Frame = -1 / +3
Query: 863 DPRIASILWLGYPGEVGGQVLPEILFGEYNPGGKLPITWYPESFTAIPMTDMNMRADPSR 684
+P+I +I+W GYPG+ GG + ++LFG++NPGG+LP+TWYP+ FTA PM M R PS
Sbjct: 378 NPKIGAIVWAGYPGQAGGISITQVLFGDHNPGGRLPVTWYPKEFTAAPMNGMPERPQPST 557
Query: 683 GYPGRTYRFYTG 648
GYPG TYR Y G
Sbjct: 558 GYPGATYRVYKG 593
>gb|BQ657146.1|BQ657146 HA09H11u HA Hordeum vulgare subsp. vulgare cDNA clone HA09H11
3-PRIME, mRNA sequence
Length = 521
Score = 117 bits (251), Expect = 6e-026
Identities = 50/103 (48%), Positives = 65/103 (63%)
Frame = -1 / -2
Query: 485 SCEALVFSVHVAVSNHGSMDGSHAVLLFARSKSSVPGFPIKQLVGFERVHTAAGSASSVE 306
+C+ L F V V NHG MDG H VLLF R ++ G P QL+GF+ VH A A+ VE
Sbjct: 436 ACDRLRFPAVVRVQNHGPMDGRHPVLLFLRWPNATDGRPASQLIGFQSVHLRADEAAHVE 257
Query: 305 ITVDPCKHMSAANPEGKRVLLLGAHVLTVGDEEFELSIEL*QG 177
V PCKH+S A +G++V+ G+H + VGD+EFELS * G
Sbjct: 256 FEVSPCKHLSRAAEDGRKVIDQGSHFVRVGDDEFELSFMA*AG 128
>gb|BM100425.1|BM100425 EBma01_SQ005_C23_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ005_C23 5', mRNA sequence
Length = 426
Score = 111 bits (237), Expect = 5e-024
Identities = 47/93 (50%), Positives = 60/93 (64%)
Frame = -1 / +3
Query: 455 VAVSNHGSMDGSHAVLLFARSKSSVPGFPIKQLVGFERVHTAAGSASSVEITVDPCKHMS 276
V V NHG MDG H VLLF R ++ G P QL+GF+ VH A A+ VE V PCKH+S
Sbjct: 3 VRVQNHGPMDGRHPVLLFLRWPNATDGRPASQLIGFQSVHLRADEAAHVEFEVSPCKHLS 182
Query: 275 AANPEGKRVLLLGAHVLTVGDEEFELSIEL*QG 177
A +G++V+ G+H + VGD+EFELS * G
Sbjct: 183 RAAEDGRKVIDQGSHFVRVGDDEFELSFMA*AG 281
>gb|AL511547.1|AL511547 AL511547 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY08G20u 3',
mRNA sequence
Length = 566
Score = 109 bits (232), Expect = 3e-023
Identities = 44/98 (44%), Positives = 60/98 (61%)
Frame = -1 / -1
Query: 482 CEALVFSVHVAVSNHGSMDGSHAVLLFARSKSSVPGFPIKQLVGFERVHTAAGSASSVEI 303
CE L F V V NHG +DG H+VL+F R ++ G P+ QL+GF H AG +S+
Sbjct: 419 CEQLKFPAVVEVQNHGPLDGKHSVLMFLRWPNATGGRPVSQLIGFRTQHLKAGEKASLTF 240
Query: 302 TVDPCKHMSAANPEGKRVLLLGAHVLTVGDEEFELSIE 189
V PC+H S A +GK+V+ G+H L VG +E E+S E
Sbjct: 239 DVRPCEHFSRAREDGKKVIDAGSHFLKVGKDEHEISFE 126
>gb|AV930889.1|AV930889 AV930889 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd25k17 3', mRNA sequence
Length = 673
Score = 109 bits (232), Expect = 3e-023
Identities = 44/98 (44%), Positives = 60/98 (61%)
Frame = -1 / -3
Query: 482 CEALVFSVHVAVSNHGSMDGSHAVLLFARSKSSVPGFPIKQLVGFERVHTAAGSASSVEI 303
CE L F V V NHG +DG H+VL+F R ++ G P+ QL+GF H AG +S+
Sbjct: 476 CEQLKFPAVVEVQNHGPLDGKHSVLMFLRWPNATGGRPVSQLIGFRTQHLKAGEKASLTF 297
Query: 302 TVDPCKHMSAANPEGKRVLLLGAHVLTVGDEEFELSIE 189
V PC+H S A +GK+V+ G+H L VG +E E+S E
Sbjct: 296 DVRPCEHFSRAREDGKKVIDAGSHFLKVGKDEHEISFE 183
>gb|AL511138.1|AL511138 AL511138 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY07B24u 3',
mRNA sequence
Length = 440
Score = 108 bits (230), Expect = 5e-023
Identities = 45/89 (50%), Positives = 58/89 (65%)
Frame = -1 / -1
Query: 443 NHGSMDGSHAVLLFARSKSSVPGFPIKQLVGFERVHTAAGSASSVEITVDPCKHMSAANP 264
NHG MDG H VLLF R ++ G P QL+GF+ VH A A+ VE V PCKH+S A
Sbjct: 440 NHGPMDGRHPVLLFLRWPNATDGRPASQLIGFQSVHLRADEAAHVEFEVSPCKHLSRAAE 261
Query: 263 EGKRVLLLGAHVLTVGDEEFELSIEL*QG 177
+G++V+ G+H + VGD+EFELS * G
Sbjct: 260 DGRKVIDQGSHFVRVGDDEFELSFMA*AG 174
>gb|BU988389.1|BU988389 HF17H23r HF Hordeum vulgare subsp. vulgare cDNA clone HF17H23
5-PRIME, mRNA sequence
Length = 426
Score = 104 bits (221), Expect = 9e-022
Identities = 44/91 (48%), Positives = 56/91 (61%)
Frame = -1 / +1
Query: 449 VSNHGSMDGSHAVLLFARSKSSVPGFPIKQLVGFERVHTAAGSASSVEITVDPCKHMSAA 270
V HG MDG H VLLF R ++ G P QL+GF+ VH A VE V PCKH+S A
Sbjct: 10 VQTHGPMDGRHPVLLFLRWPNATDGRPASQLIGFQSVHLRADDVFHVEFEVSPCKHLSRA 189
Query: 269 NPEGKRVLLLGAHVLTVGDEEFELSIEL*QG 177
+G++V+ G+H + VGD+EFELS * G
Sbjct: 190 AEDGRKVIDQGSHFVRVGDDEFELSFMA*AG 282
>gb|BU972244.1|BU972244 HB21B09r BC Hordeum vulgare subsp. vulgare cDNA clone HB21B09
5-PRIME, mRNA sequence
Length = 513
Score = 103 bits (219), Expect = 2e-021
Identities = 42/95 (44%), Positives = 58/95 (61%)
Frame = -1 / +3
Query: 473 LVFSVHVAVSNHGSMDGSHAVLLFARSKSSVPGFPIKQLVGFERVHTAAGSASSVEITVD 294
L F V V NHG +DG H+VL+F R ++ G P+ QL+GF H AG +S+ V
Sbjct: 12 LKFPAVVEVQNHGPLDGKHSVLMFLRWPNATGGRPVSQLIGFRTQHLKAGEKASLTFDVR 191
Query: 293 PCKHMSAANPEGKRVLLLGAHVLTVGDEEFELSIE 189
PC+H S A +GK+V+ G+H L VG +E E+S E
Sbjct: 192 PCEHFSRAREDGKKVIDAGSHFLKVGKDEHEISFE 296
>gb|BU972337.1|BU972337 HB21F19r BC Hordeum vulgare subsp. vulgare cDNA clone HB21F19
5-PRIME, mRNA sequence
Length = 513
Score = 103 bits (219), Expect = 2e-021
Identities = 42/95 (44%), Positives = 58/95 (61%)
Frame = -1 / +3
Query: 473 LVFSVHVAVSNHGSMDGSHAVLLFARSKSSVPGFPIKQLVGFERVHTAAGSASSVEITVD 294
L F V V NHG +DG H+VL+F R ++ G P+ QL+GF H AG +S+ V
Sbjct: 12 LKFPAVVEVQNHGPLDGKHSVLMFLRWPNATGGRPVSQLIGFRTQHLKAGEKASLTFDVR 191
Query: 293 PCKHMSAANPEGKRVLLLGAHVLTVGDEEFELSIE 189
PC+H S A +GK+V+ G+H L VG +E E+S E
Sbjct: 192 PCEHFSRAREDGKKVIDAGSHFLKVGKDEHEISFE 296
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 438,179,737
Number of Sequences: 312970
Number of extensions: 7500355
Number of successful extensions: 65361
Number of sequences better than 1.0e-020: 51
length of database: 58,378,179
effective HSP length: 52
effective length of database: 42,103,739
effective search space used: 9894378665
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)