TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3866402.2.1
(406 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV927733.1|AV927733 AV927733 K. Sato unpublished cDNA li... 148 1e-035
gb|AV931607.1|AV931607 AV931607 K. Sato unpublished cDNA li... 148 1e-035
gb|AV934689.1|AV934689 AV934689 K. Sato unpublished cDNA li... 148 1e-035
gb|AV936387.1|AV936387 AV936387 K. Sato unpublished cDNA li... 148 1e-035
gb|BJ473617.1|BJ473617 BJ473617 K. Sato unpublished cDNA li... 148 1e-035
gb|BJ475011.1|BJ475011 BJ475011 K. Sato unpublished cDNA li... 148 1e-035
gb|BJ477252.1|BJ477252 BJ477252 K. Sato unpublished cDNA li... 148 1e-035
gb|BQ661605.1|BQ661605 HM04E05u HM Hordeum vulgare subsp. v... 148 1e-035
gb|BU972175.1|BU972175 HB20N14r BC Hordeum vulgare subsp. v... 141 2e-033
gb|CD663693.1|CD663693 UCRHV18_06bd04_b1 Drought-stressed D... 136 5e-032
gb|AV931608.1|AV931608 AV931608 K. Sato unpublished cDNA li... 133 5e-031
gb|BM377017.2|BM377017 EBem05_SQ003_O02_R embryo, 14 DPA, n... 130 3e-030
gb|AV837078.1|AV837078 AV837078 K. Sato unpublished cDNA li... 127 4e-029
gb|BG415664.1|BG415664 HVSMEk0007G03f Hordeum vulgare testa... 127 4e-029
gb|BG417338.1|BG417338 HVSMEk0017J08f Hordeum vulgare testa... 127 4e-029
gb|AY177665.1| Hordeum vulgare subsp. vulgare putative call... 127 4e-029
gb|BG418775.1|BG418775 HVSMEk0024G07f Hordeum vulgare testa... 126 6e-029
gb|AV931716.1|AV931716 AV931716 K. Sato unpublished cDNA li... 126 8e-029
gb|CB876259.1|CB876259 HX10M03w HX Hordeum vulgare subsp. v... 124 2e-028
gb|BM374568.2|BM374568 EBpi03_SQ003_P19_R pistil, 4 DPA, no... 123 5e-028
gb|CD663772.1|CD663772 UCRHV18_06cd06_b1 Drought-stressed D... 118 1e-026
gb|BU995906.1|BU995906 HM11L21r HM Hordeum vulgare subsp. v... 117 3e-026
gb|CB882058.1|CB882058 HM11L21w HM Hordeum vulgare subsp. v... 117 3e-026
gb|CD662722.1|CD662722 UCRHV18_02df07_b1 Drought-stressed D... 117 3e-026
gb|AJ461988.1|AJ461988 AJ461988 S00002 Hordeum vulgare subs... 111 2e-024
gb|CD663695.1|CD663695 UCRHV18_06bd07_b1 Drought-stressed D... 110 5e-024
gb|BF265457.3|BF265457 HV_CEa0012F07f Hordeum vulgare seedl... 104 1e-023
>gb|AV927733.1|AV927733 AV927733 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd3g22 3', mRNA sequence
Length = 626
Score = 148 bits (318), Expect = 1e-035
Identities = 57/83 (68%), Positives = 69/83 (83%)
Frame = -3 / -3
Query: 404 TGWAILQISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARL 225
TGW +L ++QA KP I GLWGS++AL+RGYE +MG+++F P+A LAWFPFVSEFQ R+
Sbjct: 480 TGWGLLLVAQALKPAIMRVGLWGSIRALARGYEIIMGLLLFTPIAFLAWFPFVSEFQTRM 301
Query: 224 LFNQAFSRGLQISRILAGGKKQR 156
LFNQAFSRGLQISRIL G KK R
Sbjct: 300 LFNQAFSRGLQISRILGGHKKDR 232
>gb|AV931607.1|AV931607 AV931607 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd23h13 3', mRNA sequence
Length = 508
Score = 148 bits (318), Expect = 1e-035
Identities = 57/83 (68%), Positives = 69/83 (83%)
Frame = -3 / -2
Query: 404 TGWAILQISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARL 225
TGW +L ++QA KP I GLWGS++AL+RGYE +MG+++F P+A LAWFPFVSEFQ R+
Sbjct: 483 TGWGLLLVAQALKPAIMRVGLWGSIRALARGYEIIMGLLLFTPIAFLAWFPFVSEFQTRM 304
Query: 224 LFNQAFSRGLQISRILAGGKKQR 156
LFNQAFSRGLQISRIL G KK R
Sbjct: 303 LFNQAFSRGLQISRILGGHKKDR 235
>gb|AV934689.1|AV934689 AV934689 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal1e06 3', mRNA sequence
Length = 678
Score = 148 bits (318), Expect = 1e-035
Identities = 57/83 (68%), Positives = 69/83 (83%)
Frame = -3 / -1
Query: 404 TGWAILQISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARL 225
TGW +L ++QA KP I GLWGS++AL+RGYE +MG+++F P+A LAWFPFVSEFQ R+
Sbjct: 534 TGWGLLLVAQALKPAIMRVGLWGSIRALARGYEIIMGLLLFTPIAFLAWFPFVSEFQTRM 355
Query: 224 LFNQAFSRGLQISRILAGGKKQR 156
LFNQAFSRGLQISRIL G KK R
Sbjct: 354 LFNQAFSRGLQISRILGGHKKDR 286
>gb|AV936387.1|AV936387 AV936387 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal11c09 3', mRNA sequence
Length = 650
Score = 148 bits (318), Expect = 1e-035
Identities = 57/83 (68%), Positives = 69/83 (83%)
Frame = -3 / -3
Query: 404 TGWAILQISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARL 225
TGW +L ++QA KP I GLWGS++AL+RGYE +MG+++F P+A LAWFPFVSEFQ R+
Sbjct: 504 TGWGLLLVAQALKPAIMRVGLWGSIRALARGYEIIMGLLLFTPIAFLAWFPFVSEFQTRM 325
Query: 224 LFNQAFSRGLQISRILAGGKKQR 156
LFNQAFSRGLQISRIL G KK R
Sbjct: 324 LFNQAFSRGLQISRILGGHKKDR 256
>gb|BJ473617.1|BJ473617 BJ473617 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal15l17 3', mRNA sequence
Length = 633
Score = 148 bits (318), Expect = 1e-035
Identities = 57/83 (68%), Positives = 69/83 (83%)
Frame = -3 / -2
Query: 404 TGWAILQISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARL 225
TGW +L ++QA KP I GLWGS++AL+RGYE +MG+++F P+A LAWFPFVSEFQ R+
Sbjct: 488 TGWGLLLVAQALKPAIMRVGLWGSIRALARGYEIIMGLLLFTPIAFLAWFPFVSEFQTRM 309
Query: 224 LFNQAFSRGLQISRILAGGKKQR 156
LFNQAFSRGLQISRIL G KK R
Sbjct: 308 LFNQAFSRGLQISRILGGHKKDR 240
>gb|BJ475011.1|BJ475011 BJ475011 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal27j14 3', mRNA sequence
Length = 623
Score = 148 bits (318), Expect = 1e-035
Identities = 57/83 (68%), Positives = 69/83 (83%)
Frame = -3 / -1
Query: 404 TGWAILQISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARL 225
TGW +L ++QA KP I GLWGS++AL+RGYE +MG+++F P+A LAWFPFVSEFQ R+
Sbjct: 482 TGWGLLLVAQALKPAIMRVGLWGSIRALARGYEIIMGLLLFTPIAFLAWFPFVSEFQTRM 303
Query: 224 LFNQAFSRGLQISRILAGGKKQR 156
LFNQAFSRGLQISRIL G KK R
Sbjct: 302 LFNQAFSRGLQISRILGGHKKDR 234
>gb|BJ477252.1|BJ477252 BJ477252 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal40n15 3', mRNA sequence
Length = 623
Score = 148 bits (318), Expect = 1e-035
Identities = 57/83 (68%), Positives = 69/83 (83%)
Frame = -3 / -1
Query: 404 TGWAILQISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARL 225
TGW +L ++QA KP I GLWGS++AL+RGYE +MG+++F P+A LAWFPFVSEFQ R+
Sbjct: 482 TGWGLLLVAQALKPAIMRVGLWGSIRALARGYEIIMGLLLFTPIAFLAWFPFVSEFQTRM 303
Query: 224 LFNQAFSRGLQISRILAGGKKQR 156
LFNQAFSRGLQISRIL G KK R
Sbjct: 302 LFNQAFSRGLQISRILGGHKKDR 234
>gb|BQ661605.1|BQ661605 HM04E05u HM Hordeum vulgare subsp. vulgare cDNA clone HM04E05
3-PRIME, mRNA sequence
Length = 616
Score = 148 bits (318), Expect = 1e-035
Identities = 57/83 (68%), Positives = 69/83 (83%)
Frame = -3 / -1
Query: 404 TGWAILQISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARL 225
TGW +L ++QA KP I GLWGS++AL+RGYE +MG+++F P+A LAWFPFVSEFQ R+
Sbjct: 544 TGWGLLLVAQALKPAIMRVGLWGSIRALARGYEIIMGLLLFTPIAFLAWFPFVSEFQTRM 365
Query: 224 LFNQAFSRGLQISRILAGGKKQR 156
LFNQAFSRGLQISRIL G KK R
Sbjct: 364 LFNQAFSRGLQISRILGGHKKDR 296
>gb|BU972175.1|BU972175 HB20N14r BC Hordeum vulgare subsp. vulgare cDNA clone HB20N14
5-PRIME, mRNA sequence
Length = 373
Score = 141 bits (303), Expect = 2e-033
Identities = 55/83 (66%), Positives = 68/83 (81%)
Frame = -3 / +3
Query: 404 TGWAILQISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARL 225
TGW IL I+Q P+ + GLWGSV+AL+R YE +MG+++F P+ VL+WFPFVSEFQ R+
Sbjct: 66 TGWGILLIAQPCIPLFRVTGLWGSVRALARAYEVIMGMLLFTPITVLSWFPFVSEFQTRM 245
Query: 224 LFNQAFSRGLQISRILAGGKKQR 156
LFNQAFSRGLQISRIL G KK+R
Sbjct: 246 LFNQAFSRGLQISRILGGQKKER 314
>gb|CD663693.1|CD663693 UCRHV18_06bd04_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_06bd04, mRNA sequence
Length = 550
Score = 136 bits (292), Expect = 5e-032
Identities = 53/76 (69%), Positives = 64/76 (84%)
Frame = -3 / -1
Query: 383 ISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARLLFNQAFS 204
++QA KP I GLWGS++AL+RGYE +MG+++F P+A LAWFPFVSEFQ R+LFNQAFS
Sbjct: 547 VAQALKPAIMRVGLWGSIRALARGYEIIMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFS 368
Query: 203 RGLQISRILAGGKKQR 156
RGLQISRIL G KK R
Sbjct: 367 RGLQISRILGGHKKDR 320
>gb|AV931608.1|AV931608 AV931608 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd23h14 3', mRNA sequence
Length = 358
Score = 133 bits (285), Expect = 5e-031
Identities = 53/74 (71%), Positives = 61/74 (82%)
Frame = -3 / -3
Query: 377 QASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARLLFNQAFSRG 198
QA KP I GLWGS++AL+RGYE +MG ++F P+A LAWFPFVSEFQ R+LFNQAFSRG
Sbjct: 356 QALKPAIMRVGLWGSIRALARGYEIIMGXLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRG 177
Query: 197 LQISRILAGGKKQR 156
LQISRIL G KK R
Sbjct: 176 LQISRILGGHKKDR 135
>gb|BM377017.2|BM377017 EBem05_SQ003_O02_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ003_O02 5', mRNA sequence
Length = 466
Score = 130 bits (279), Expect = 3e-030
Identities = 48/72 (66%), Positives = 61/72 (84%)
Frame = -3 / +1
Query: 404 TGWAILQISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARL 225
TGW +L ++QA KP I GLWGS++AL+RGY+ +MG+++F P+A LAWFPFVSEFQ R+
Sbjct: 250 TGWGLLLVAQALKPAIMKVGLWGSIRALARGYQIIMGLLLFTPIAFLAWFPFVSEFQTRM 429
Query: 224 LFNQAFSRGLQI 189
LFNQAFSRGLQI
Sbjct: 430 LFNQAFSRGLQI 465
>gb|AV837078.1|AV837078 AV837078 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare seedling leaves second leaf stage Hordeum
vulgare subsp. vulgare cDNA clone basd19k01, mRNA
sequence
Length = 618
Score = 127 bits (271), Expect = 4e-029
Identities = 49/81 (60%), Positives = 65/81 (80%)
Frame = -3 / -3
Query: 404 TGWAILQISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARL 225
TGW IL I+ A KP++K GLW +V++L+R Y+ MG++IFVP+A+ +WFPF+S FQ RL
Sbjct: 556 TGWGILSIAVAWKPIVKRLGLWKTVRSLARLYDAGMGMIIFVPIAICSWFPFISTFQTRL 377
Query: 224 LFNQAFSRGLQISRILAGGKK 162
LFNQAFSRGL+IS ILAG +
Sbjct: 376 LFNQAFSRGLEISLILAGNNQ 314
>gb|BG415664.1|BG415664 HVSMEk0007G03f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0007G03f, mRNA sequence
Length = 641
Score = 127 bits (271), Expect = 4e-029
Identities = 49/81 (60%), Positives = 65/81 (80%)
Frame = -3 / -2
Query: 404 TGWAILQISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARL 225
TGW IL I+ A KP++K GLW +V++L+R Y+ MG++IFVP+A+ +WFPF+S FQ RL
Sbjct: 469 TGWGILSIAVAWKPIVKRLGLWKTVRSLARLYDAGMGMIIFVPIAICSWFPFISTFQTRL 290
Query: 224 LFNQAFSRGLQISRILAGGKK 162
LFNQAFSRGL+IS ILAG +
Sbjct: 289 LFNQAFSRGLEISLILAGNNQ 227
>gb|BG417338.1|BG417338 HVSMEk0017J08f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0017J08f, mRNA sequence
Length = 839
Score = 127 bits (271), Expect = 4e-029
Identities = 49/81 (60%), Positives = 65/81 (80%)
Frame = -3 / +2
Query: 404 TGWAILQISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARL 225
TGW IL I+ A KP++K GLW +V++L+R Y+ MG++IFVP+A+ +WFPF+S FQ RL
Sbjct: 191 TGWGILSIAVAWKPIVKRLGLWKTVRSLARLYDAGMGMIIFVPIAICSWFPFISTFQTRL 370
Query: 224 LFNQAFSRGLQISRILAGGKK 162
LFNQAFSRGL+IS ILAG +
Sbjct: 371 LFNQAFSRGLEISLILAGNNQ 433
>gb|AY177665.1| Hordeum vulgare subsp. vulgare putative callose synthase mRNA,
complete cds
Length = 6180
Score = 127 bits (271), Expect = 4e-029
Identities = 49/81 (60%), Positives = 65/81 (80%)
Frame = -3 / +3
Query: 404 TGWAILQISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARL 225
TGW IL I+ A KP++K GLW +V++L+R Y+ MG++IFVP+A+ +WFPF+S FQ RL
Sbjct: 5583 TGWGILSIAVAWKPIVKRLGLWKTVRSLARLYDAGMGMIIFVPIAICSWFPFISTFQTRL 5762
Query: 224 LFNQAFSRGLQISRILAGGKK 162
LFNQAFSRGL+IS ILAG +
Sbjct: 5763 LFNQAFSRGLEISLILAGNNQ 5825
>gb|BG418775.1|BG418775 HVSMEk0024G07f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0024G07f, mRNA sequence
Length = 834
Score = 126 bits (270), Expect = 6e-029
Identities = 49/78 (62%), Positives = 64/78 (82%)
Frame = -3 / +2
Query: 404 TGWAILQISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARL 225
TGW IL I+ A KP++K GLW +V++L+R Y+ MG++IFVP+A+ +WFPF+S FQ RL
Sbjct: 413 TGWGILSIAVAWKPIVKRLGLWKTVRSLARLYDAGMGMIIFVPIAICSWFPFISTFQTRL 592
Query: 224 LFNQAFSRGLQISRILAG 171
LFNQAFSRGL+IS ILAG
Sbjct: 593 LFNQAFSRGLEISLILAG 646
>gb|AV931716.1|AV931716 AV931716 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd23o13 3', mRNA sequence
Length = 413
Score = 126 bits (269), Expect = 8e-029
Identities = 49/68 (72%), Positives = 58/68 (85%)
Frame = -3 / -1
Query: 359 IKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARLLFNQAFSRGLQISRI 180
I GLWGS++AL+RGYE +MG+++F P+A LAWFPFVSEFQ R+LFNQAFSRGLQISRI
Sbjct: 413 IMRVGLWGSIRALARGYEIIMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRI 234
Query: 179 LAGGKKQR 156
L G KK R
Sbjct: 233 LGGHKKDR 210
>gb|CB876259.1|CB876259 HX10M03w HX Hordeum vulgare subsp. vulgare cDNA clone HX10M03
3-PRIME, mRNA sequence
Length = 559
Score = 124 bits (266), Expect = 2e-028
Identities = 48/80 (60%), Positives = 64/80 (80%)
Frame = -3 / -3
Query: 401 GWAILQISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARLL 222
GW IL I+ A KP++K GLW +V++L+R Y+ MG++IFVP+A+ +WFPF+S FQ RLL
Sbjct: 557 GWGILSIAVAWKPIVKRLGLWKTVRSLARLYDAGMGMIIFVPIAICSWFPFISTFQTRLL 378
Query: 221 FNQAFSRGLQISRILAGGKK 162
FNQAFSRGL+IS ILAG +
Sbjct: 377 FNQAFSRGLEISLILAGNNQ 318
>gb|BM374568.2|BM374568 EBpi03_SQ003_P19_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ003_P19 5', mRNA sequence
Length = 425
Score = 123 bits (263), Expect = 5e-028
Identities = 47/69 (68%), Positives = 59/69 (85%)
Frame = -3 / +1
Query: 362 VIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARLLFNQAFSRGLQISR 183
+ + GLWGSV+AL+R YE +MG+++F P+ VL+WFPFVSEFQ R+LFNQAFSRGLQISR
Sbjct: 1 LFRVTGLWGSVRALARAYEVIMGMLLFTPITVLSWFPFVSEFQTRMLFNQAFSRGLQISR 180
Query: 182 ILAGGKKQR 156
IL G KK+R
Sbjct: 181 ILGGQKKER 207
>gb|CD663772.1|CD663772 UCRHV18_06cd06_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_06cd06, mRNA sequence
Length = 639
Score = 118 bits (253), Expect = 1e-026
Identities = 46/81 (56%), Positives = 62/81 (76%)
Frame = -3 / -1
Query: 404 TGWAILQISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARL 225
TGW I I+ A KP++K GLW +V++L+ Y+ MG++IFVP+A+ +WFPF+S FQ RL
Sbjct: 594 TGWGIFSIAVAWKPIVKRLGLWKTVRSLAPLYDAGMGMIIFVPIAICSWFPFISPFQTRL 415
Query: 224 LFNQAFSRGLQISRILAGGKK 162
LFNQAFSRGL+I ILAG +
Sbjct: 414 LFNQAFSRGLEIFFILAGNNQ 352
>gb|BU995906.1|BU995906 HM11L21r HM Hordeum vulgare subsp. vulgare cDNA clone HM11L21
5-PRIME, mRNA sequence
Length = 641
Score = 117 bits (250), Expect = 3e-026
Identities = 48/80 (60%), Positives = 59/80 (73%)
Frame = -3 / +3
Query: 404 TGWAILQISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARL 225
TGW IL ++ K V+K GLW SV+ +SR Y+ MG VIF P+ +WFPFVS FQ+R+
Sbjct: 111 TGWCILCLAITWKRVVKTLGLWDSVREISRMYDAGMGAVIFAPIVFFSWFPFVSTFQSRI 290
Query: 224 LFNQAFSRGLQISRILAGGK 165
LFNQAFSRGL+IS ILAG K
Sbjct: 291 LFNQAFSRGLEISLILAGNK 350
>gb|CB882058.1|CB882058 HM11L21w HM Hordeum vulgare subsp. vulgare cDNA clone HM11L21
3-PRIME, mRNA sequence
Length = 585
Score = 117 bits (250), Expect = 3e-026
Identities = 48/80 (60%), Positives = 59/80 (73%)
Frame = -3 / -1
Query: 404 TGWAILQISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARL 225
TGW IL ++ K V+K GLW SV+ +SR Y+ MG VIF P+ +WFPFVS FQ+R+
Sbjct: 534 TGWCILCLAITWKRVVKTLGLWDSVREISRMYDAGMGAVIFAPIVFFSWFPFVSTFQSRI 355
Query: 224 LFNQAFSRGLQISRILAGGK 165
LFNQAFSRGL+IS ILAG K
Sbjct: 354 LFNQAFSRGLEISLILAGNK 295
>gb|CD662722.1|CD662722 UCRHV18_02df07_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_02df07, mRNA sequence
Length = 676
Score = 117 bits (250), Expect = 3e-026
Identities = 48/80 (60%), Positives = 59/80 (73%)
Frame = -3 / -2
Query: 404 TGWAILQISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARL 225
TGW IL ++ K V+K GLW SV+ +SR Y+ MG VIF P+ +WFPFVS FQ+R+
Sbjct: 627 TGWCILCLAITWKRVVKTLGLWDSVREISRMYDAGMGAVIFAPIVFFSWFPFVSTFQSRI 448
Query: 224 LFNQAFSRGLQISRILAGGK 165
LFNQAFSRGL+IS ILAG K
Sbjct: 447 LFNQAFSRGLEISLILAGNK 388
>gb|AJ461988.1|AJ461988 AJ461988 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200051G08F1, mRNA sequence
Length = 300
Score = 111 bits (237), Expect = 2e-024
Identities = 42/69 (60%), Positives = 57/69 (82%)
Frame = -3 / +3
Query: 368 KPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARLLFNQAFSRGLQI 189
KP++K GLW +V++L+R Y+ MG++IFVP+A+ +WFPF+S FQ RLLFNQAFSRGL+I
Sbjct: 3 KPIVKRLGLWKTVRSLARLYDAGMGMIIFVPIAICSWFPFISTFQTRLLFNQAFSRGLEI 182
Query: 188 SRILAGGKK 162
S ILAG +
Sbjct: 183 SLILAGNNQ 209
>gb|CD663695.1|CD663695 UCRHV18_06bd07_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_06bd07, mRNA sequence
Length = 506
Score = 110 bits (234), Expect = 5e-024
Identities = 43/58 (74%), Positives = 51/58 (87%)
Frame = -3 / -3
Query: 329 KALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARLLFNQAFSRGLQISRILAGGKKQR 156
+AL+RGYE +MG+++F P+A LAWFPFVSEFQ R+LFNQAFSRGLQISRIL G KK R
Sbjct: 498 RALARGYEIIMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDR 325
>gb|BF265457.3|BF265457 HV_CEa0012F07f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0012F07f, mRNA sequence
Length = 654
Score = 104 bits (222), Expect(2) = 1e-023
Identities = 37/64 (57%), Positives = 50/64 (78%)
Frame = -3 / +3
Query: 404 TGWAILQISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARL 225
TGW +L ++QA KP I GLWGS++AL+RGYE +MG+++F P+A LAWFPFVSEFQ +
Sbjct: 441 TGWGLLLVAQALKPAIMRVGLWGSIRALARGYEIIMGLLLFTPIAFLAWFPFVSEFQTXM 620
Query: 224 LFNQ 213
L +
Sbjct: 621 LLTR 632
Score = 23.5 bits (45), Expect(2) = 1e-023
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -3 / +2
Query: 218 NQAFSRGLQ 192
NQAFSRGLQ
Sbjct: 626 NQAFSRGLQ 652
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 223,558,478
Number of Sequences: 312970
Number of extensions: 3714852
Number of successful extensions: 139868
Number of sequences better than 1.0e-020: 35
length of database: 58,378,179
effective HSP length: 49
effective length of database: 43,042,649
effective search space used: 3658625165
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)