TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3848982.2.1
(697 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU980984.1|BU980984 HA22E18r HA Hordeum vulgare subsp. v... 152 8e-060
gb|BM098205.2|BM098205 EBpi03_SQ002_N14_R pistil, 4 DPA, no... 152 8e-060
gb|BG369116.2|BG369116 HVSMEi0021M10f Hordeum vulgare 20 DA... 139 3e-048
gb|BI950777.1|BI950777 HVSMEl0023C15f Hordeum vulgare spike... 144 1e-045
gb|BQ759881.1|BQ759881 EBpi05_SQ004_P16_R pistil, 8 DPA, no... 136 6e-043
gb|BG368652.1|BG368652 HVSMEi0020B24f Hordeum vulgare 20 DA... 149 5e-040
gb|BJ463021.1|BJ463021 BJ463021 K. Sato unpublished cDNA li... 146 1e-038
gb|BG368109.2|BG368109 HVSMEi0015L12f Hordeum vulgare 20 DA... 152 5e-038
gb|AV917139.1|AV917139 AV917139 K. Sato unpublished cDNA li... 119 1e-037
gb|BF260026.3|BF260026 HVSMEf0020O13f Hordeum vulgare seedl... 113 7e-037
gb|BG368126.2|BG368126 HVSMEi0015M21f Hordeum vulgare 20 DA... 152 2e-036
gb|CK122346.1|CK122346 BES1824102p12 BES1824 Hordeum vulgar... 102 2e-036
gb|BE060246.3|BE060246 HVSMEg0011L08f Hordeum vulgare pre-a... 102 2e-036
gb|CV058074.1|CV058074 BNEL34a7 Barley EST endosperm librar... 107 6e-036
gb|BF257093.3|BF257093 HVSMEf0011N11f Hordeum vulgare seedl... 133 5e-035
gb|CK123980.1|CK123980 BES1824106f16 BES1824 Hordeum vulgar... 119 5e-032
gb|BF254126.2|BF254126 HVSMEf0003B13f Hordeum vulgare seedl... 119 1e-031
gb|AV928430.1|AV928430 AV928430 K. Sato unpublished cDNA li... 93 9e-031
gb|CA019924.1|CA019924 HV13L18r HV Hordeum vulgare subsp. v... 133 1e-030
gb|CV055940.1|CV055940 BNEL12B5 Barley EST endosperm librar... 85 2e-030
gb|BQ465138.1|BQ465138 HU02M06r HU Hordeum vulgare subsp. v... 119 2e-030
gb|CK122737.1|CK122737 BES1824105j22 BES1824 Hordeum vulgar... 115 3e-030
gb|BF622288.3|BF622288 HVSMEa0002I16f Hordeum vulgare seedl... 106 3e-030
gb|BE454367.2|BE454367 HVSMEh0093N18f Hordeum vulgare 5-45 ... 102 5e-030
gb|BI956772.1|BI956772 HVSMEn0005E06f Hordeum vulgare rachi... 128 2e-029
gb|CB881182.1|CB881182 HM09A07w HM Hordeum vulgare subsp. v... 68 9e-029
gb|BE193443.3|BE193443 HVSMEh0081A10f Hordeum vulgare 5-45 ... 105 2e-028
gb|BF628930.2|BF628930 HVSMEb0009C23f Hordeum vulgare seedl... 124 4e-028
gb|BQ459628.1|BQ459628 HA08J01r HA Hordeum vulgare subsp. v... 56 6e-028
gb|BM097618.2|BM097618 EBem04_SQ002_D15_R embryo, 12 DPA, n... 112 7e-028
gb|BI959138.1|BI959138 HVSMEn0018F10f Hordeum vulgare rachi... 111 2e-027
gb|AV917082.1|AV917082 AV917082 K. Sato unpublished cDNA li... 119 1e-026
gb|CA019997.1|CA019997 HV14A15r HV Hordeum vulgare subsp. v... 119 1e-026
gb|CV054003.1|CV054003 BNEL105f8 Barley EST endosperm libra... 108 5e-026
gb|CV063217.1|CV063217 BNEL87h3 Barley EST endosperm librar... 105 7e-026
gb|BF253787.2|BF253787 HVSMEf0002C01f Hordeum vulgare seedl... 116 1e-025
gb|BQ459308.1|BQ459308 HA01I15r HA Hordeum vulgare subsp. v... 73 9e-025
gb|BF257559.2|BF257559 HVSMEf0013D22f Hordeum vulgare seedl... 105 6e-024
gb|BF256653.2|BF256653 HVSMEf0010J19f Hordeum vulgare seedl... 108 4e-023
gb|CV063939.1|CV063939 BNEL94h5 Barley EST endosperm librar... 108 4e-023
gb|BU967134.1|BU967134 HB03G05r BC Hordeum vulgare subsp. v... 107 5e-023
gb|BU981055.1|BU981055 HA22I03r HA Hordeum vulgare subsp. v... 107 5e-023
gb|CB880652.1|CB880652 HM07E17w HM Hordeum vulgare subsp. v... 70 5e-023
gb|CB881234.1|CB881234 HM09C23w HM Hordeum vulgare subsp. v... 70 5e-023
gb|CA017263.1|CA017263 HV14A15u HV Hordeum vulgare subsp. v... 70 7e-023
gb|BQ458429.1|BQ458429 HA05E07r HA Hordeum vulgare subsp. v... 105 2e-022
gb|CK124171.1|CK124171 BES1824107e17 BES1824 Hordeum vulgar... 56 2e-022
gb|BM442635.2|BM442635 EBan01_SQ003_L19_R anther, yellow st... 68 3e-022
gb|BQ467895.1|BQ467895 HR01E04r HR Hordeum vulgare subsp. v... 63 5e-022
gb|BI958784.1|BI958784 HVSMEn0016J13f Hordeum vulgare rachi... 103 1e-021
gb|CV060611.1|CV060611 BNEL5B4 Barley EST endosperm library... 102 2e-021
>gb|BU980984.1|BU980984 HA22E18r HA Hordeum vulgare subsp. vulgare cDNA clone HA22E18
5-PRIME, mRNA sequence
Length = 567
Score = 152 bits (326), Expect(3) = 8e-060
Identities = 60/81 (74%), Positives = 68/81 (83%)
Frame = +3 / +3
Query: 42 EPVHFDLSGTAFGAMAKPGQADQLRNAGRLQVQYIRVACNWNGLDIAFRVDAGSNANYLA 221
EPVHFDLSGTAFG MAKPGQADQLR AGRLQ+QY RV CNW G+ +AF+VDAGSN YLA
Sbjct: 63 EPVHFDLSGTAFGGMAKPGQADQLRAAGRLQIQYTRVPCNWRGMHVAFKVDAGSNPYYLA 242
Query: 222 MAIEYESGDGDLRAXELKQSG 284
+ IEYE GDGDL + EL ++G
Sbjct: 243 VLIEYEDGDGDLSSVELMENG 305
Score = 111 bits (238), Expect(3) = 7e-042
Identities = 50/75 (66%), Positives = 53/75 (70%)
Frame = -1 / -3
Query: 229 MAMAR*LAFEPASTLKAMSKPFQLHATRMYWTCRRPAFRSWSAWPGFAMAPNAVPLRSKC 50
M+ AR* EPASTLKA P QLH TR+YW RRPA RSWSAWPGFAM PNAVPLRSK
Sbjct: 250 MSTAR**GLEPASTLKATCIPRQLHGTRVYWIWRRPAARSWSAWPGFAMPPNAVPLRSKW 71
Query: 49 TGSTWPQRRGTGRVR 5
TGS+ G VR
Sbjct: 70 TGSSRHGPSGHSSVR 26
Score = 76.7 bits (161), Expect(3) = 8e-060
Identities = 31/39 (79%), Positives = 34/39 (87%)
Frame = +3 / +3
Query: 354 LQAPLSVRLTSGSGRVLVASNVIPAGWQPGRTYRSVVNF 470
L AP SVRLTS SG+ LVASNVIPAGW+PG TYRSVVN+
Sbjct: 378 LHAPFSVRLTSSSGKTLVASNVIPAGWKPGGTYRSVVNY 494
Score = 73.5 bits (154), Expect(2) = 3e-027
Identities = 39/73 (53%), Positives = 43/73 (58%)
Frame = -3 / -2
Query: 239 LVLDXXXXXXXXXXXXHPEGDVQAVPVARHPNVLDLQAAGVPELVGLAGLRHGTERRPAQ 60
LVLD H EG V PVAR P VLDL+ +G +LVGLAGLRH ERRPAQ
Sbjct: 260 LVLDEHGEVVGVGAGVHLEGYVHPPPVARDPCVLDLETSGRAKLVGLAGLRHAAERRPAQ 81
Query: 59 VKVHGLHLAAAPG 21
V+V GL A G
Sbjct: 80 VEVDGLIQARPVG 42
Score = 70.7 bits (148), Expect(3) = 7e-042
Identities = 30/39 (76%), Positives = 33/39 (84%)
Frame = -1 / -3
Query: 466 LTTER*VLPGCHPAGMTLLATRTLPEPEVRRTDRGACRL 350
LTTER*V PG PAGMTLLATR LPE EVRRT++GAC +
Sbjct: 490 LTTER*VPPGFQPAGMTLLATRVLPELEVRRTEKGACNI 374
Score = 68.0 bits (142), Expect(2) = 3e-027
Identities = 29/41 (70%), Positives = 33/41 (80%)
Frame = -3 / -2
Query: 476 SSEVDDGAVGSAGLPSGGDDVAGDEDPAGARGEADRQGGLQ 354
SS VDDGAVG+AGLP+GGDDV E AGA GEADR+G +Q
Sbjct: 500 SSVVDDGAVGAAGLPAGGDDVTCHESLAGAGGEADREGRMQ 378
Score = 40.5 bits (82), Expect(3) = 8e-060
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = +3 / +3
Query: 288 AAWAPMQRSWGAVWQYKSG 344
A W M RSWGAVW+Y SG
Sbjct: 315 AGWTKMDRSWGAVWRYNSG 371
Score = 26.3 bits (51), Expect(3) = 7e-042
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -1 / -3
Query: 349 VEPDLYCHTAPQER 308
+ P+LY HTAP +R
Sbjct: 376 IGPELYLHTAPHDR 335
>gb|BM098205.2|BM098205 EBpi03_SQ002_N14_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ002_N14 5', mRNA sequence
Length = 550
Score = 152 bits (326), Expect(3) = 8e-060
Identities = 60/81 (74%), Positives = 68/81 (83%)
Frame = +3 / +1
Query: 42 EPVHFDLSGTAFGAMAKPGQADQLRNAGRLQVQYIRVACNWNGLDIAFRVDAGSNANYLA 221
EPVHFDLSGTAFG MAKPGQADQLR AGRLQ+QY RV CNW G+ +AF+VDAGSN YLA
Sbjct: 49 EPVHFDLSGTAFGGMAKPGQADQLRAAGRLQIQYTRVPCNWRGMHVAFKVDAGSNPYYLA 228
Query: 222 MAIEYESGDGDLRAXELKQSG 284
+ IEYE GDGDL + EL ++G
Sbjct: 229 VLIEYEDGDGDLSSVELMENG 291
Score = 111 bits (238), Expect(3) = 7e-042
Identities = 50/75 (66%), Positives = 53/75 (70%)
Frame = -1 / -3
Query: 229 MAMAR*LAFEPASTLKAMSKPFQLHATRMYWTCRRPAFRSWSAWPGFAMAPNAVPLRSKC 50
M+ AR* EPASTLKA P QLH TR+YW RRPA RSWSAWPGFAM PNAVPLRSK
Sbjct: 236 MSTAR**GLEPASTLKATCIPRQLHGTRVYWIWRRPAARSWSAWPGFAMPPNAVPLRSKW 57
Query: 49 TGSTWPQRRGTGRVR 5
TGS+ G VR
Sbjct: 56 TGSSRHGPSGHSSVR 12
Score = 76.7 bits (161), Expect(3) = 8e-060
Identities = 31/39 (79%), Positives = 34/39 (87%)
Frame = +3 / +1
Query: 354 LQAPLSVRLTSGSGRVLVASNVIPAGWQPGRTYRSVVNF 470
L AP SVRLTS SG+ LVASNVIPAGW+PG TYRSVVN+
Sbjct: 364 LHAPFSVRLTSSSGKTLVASNVIPAGWKPGGTYRSVVNY 480
Score = 73.5 bits (154), Expect(2) = 4e-026
Identities = 39/73 (53%), Positives = 43/73 (58%)
Frame = -3 / -2
Query: 239 LVLDXXXXXXXXXXXXHPEGDVQAVPVARHPNVLDLQAAGVPELVGLAGLRHGTERRPAQ 60
LVLD H EG V PVAR P VLDL+ +G +LVGLAGLRH ERRPAQ
Sbjct: 246 LVLDEHGEVVGVGAGVHLEGYVHPPPVARDPCVLDLETSGRAKLVGLAGLRHAAERRPAQ 67
Query: 59 VKVHGLHLAAAPG 21
V+V GL A G
Sbjct: 66 VEVDGLIQARPVG 28
Score = 70.7 bits (148), Expect(3) = 7e-042
Identities = 30/39 (76%), Positives = 33/39 (84%)
Frame = -1 / -3
Query: 466 LTTER*VLPGCHPAGMTLLATRTLPEPEVRRTDRGACRL 350
LTTER*V PG PAGMTLLATR LPE EVRRT++GAC +
Sbjct: 476 LTTER*VPPGFQPAGMTLLATRVLPELEVRRTEKGACNI 360
Score = 64.3 bits (134), Expect(2) = 4e-026
Identities = 28/41 (68%), Positives = 32/41 (78%)
Frame = -3 / -2
Query: 476 SSEVDDGAVGSAGLPSGGDDVAGDEDPAGARGEADRQGGLQ 354
SS VDDGAVG+A LP+GGDDV E AGA GEADR+G +Q
Sbjct: 486 SSVVDDGAVGAARLPAGGDDVTCHESLAGAGGEADREGRMQ 364
Score = 40.5 bits (82), Expect(3) = 8e-060
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = +3 / +1
Query: 288 AAWAPMQRSWGAVWQYKSG 344
A W M RSWGAVW+Y SG
Sbjct: 301 AGWTKMDRSWGAVWRYNSG 357
Score = 26.3 bits (51), Expect(3) = 7e-042
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -1 / -3
Query: 349 VEPDLYCHTAPQER 308
+ P+LY HTAP +R
Sbjct: 362 IGPELYLHTAPHDR 321
>gb|BG369116.2|BG369116 HVSMEi0021M10f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0021M10f, mRNA sequence
Length = 609
Score = 139 bits (298), Expect(3) = 3e-048
Identities = 56/81 (69%), Positives = 63/81 (77%)
Frame = +3 / +1
Query: 42 EPVHFDLSGTAFGAMAKPGQADQLRNAGRLQVQYIRVACNWNGLDIAFRVDAGSNANYLA 221
EPVHFDLSGTAFG MAKPGQADQL GRLQ+QY RV CNW G+ F+VDAG N YLA
Sbjct: 22 EPVHFDLSGTAFGGMAKPGQADQLCAGGRLQIQYTRVPCNWRGMHRTFKVDAGFNPYYLA 201
Query: 222 MAIEYESGDGDLRAXELKQSG 284
+ IEYE GDGDL + EL ++G
Sbjct: 202 VLIEYEDGDGDLSSVELMENG 264
Score = 103 bits (219), Expect(4) = 6e-038
Identities = 43/64 (67%), Positives = 48/64 (75%)
Frame = -1 / -2
Query: 229 MAMAR*LAFEPASTLKAMSKPFQLHATRMYWTCRRPAFRSWSAWPGFAMAPNAVPLRSKC 50
M+ AR* +PASTLK P QLH TR+YW RRP +SWSAWPGFAM PNAVPLRSK
Sbjct: 209 MSTAR**GLKPASTLKVRCIPRQLHGTRVYWIWRRPPAQSWSAWPGFAMPPNAVPLRSKW 30
Query: 49 TGST 38
TGS+
Sbjct: 29 TGSS 18
Score = 55.6 bits (115), Expect(4) = 6e-038
Identities = 22/30 (73%), Positives = 25/30 (83%)
Frame = -1 / -2
Query: 439 GCHPAGMTLLATRTLPEPEVRRTDRGACRL 350
G PAGMTLLATR LPE EVRRT++GAC +
Sbjct: 422 GFQPAGMTLLATRVLPELEVRRTEKGACNI 333
Score = 50.6 bits (104), Expect(3) = 3e-048
Identities = 22/29 (75%), Positives = 24/29 (82%)
Frame = +3 / +1
Query: 354 LQAPLSVRLTSGSGRVLVASNVIPAGWQP 440
L AP SVRLTS SG+ LVASNVIPAG +P
Sbjct: 337 LHAPFSVRLTSSSGKTLVASNVIPAG*KP 423
Score = 40.5 bits (82), Expect(3) = 3e-048
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = +3 / +1
Query: 288 AAWAPMQRSWGAVWQYKSG 344
A W M RSWGAVW+Y SG
Sbjct: 274 AGWTKMDRSWGAVWRYNSG 330
Score = 28.1 bits (55), Expect(4) = 6e-038
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = -3 / -2
Query: 476 SSEVDDGAVGSAGLPSGG 423
SS VDDGAVG AG G
Sbjct: 458 SSVVDDGAVGPAGFQPAG 405
Score = 26.3 bits (51), Expect(4) = 6e-038
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -1 / -2
Query: 349 VEPDLYCHTAPQER 308
+ P+LY HTAP +R
Sbjct: 335 IGPELYLHTAPHDR 294
>gb|BI950777.1|BI950777 HVSMEl0023C15f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0023C15f, mRNA sequence
Length = 986
Score = 144 bits (310), Expect(2) = 1e-045
Identities = 55/102 (53%), Positives = 74/102 (72%)
Frame = +3 / +3
Query: 42 EPVHFDLSGTAFGAMAKPGQADQLRNAGRLQVQYIRVACNWNGLDIAFRVDAGSNANYLA 221
EP HFD+SGTA GAMAKPG AD+LR G +++QY RV C + G++IAF+VD GSN Y
Sbjct: 159 EPCHFDMSGTALGAMAKPGMADKLRAGGVIRMQYKRVPCKYPGVNIAFKVDQGSNPFYFK 338
Query: 222 MAIEYESGDGDLRAXELKQSGAAAWAPMQRSWGAVWQYKSGS 347
IE+E DGDL+A LK++G+ AW M + WGA+W+ +G+
Sbjct: 339 TLIEFEDDDGDLKAVALKEAGSGAWTQMTQDWGALWRLNNGN 464
Score = 79.0 bits (166), Expect(2) = 4e-024
Identities = 43/101 (42%), Positives = 48/101 (47%)
Frame = -1 / -2
Query: 343 PDLYCHTAPQERCMGAHAAAPLCFXXXXXXXXXXXXXSMAMAR*LAFEPASTLKAMSKPF 164
P L H APQ + A P S+ + +* EP STLKAM P
Sbjct: 460 PLLRRHNAPQSCVICVQAPLPASLRATALRSPSSSSNSIRVLK*KGLEPWSTLKAMLTPG 281
Query: 163 QLHATRMYWTCRRPAFRSWSAWPGFAMAPNAVPLRSKCTGS 41
LH T +Y P RS SA PGFAMAP AVPL SK GS
Sbjct: 280 YLHGTLLYCILMTPPARSLSAMPGFAMAPKAVPLMSKWHGS 158
Score = 58.3 bits (121), Expect(2) = 1e-045
Identities = 24/44 (54%), Positives = 31/44 (70%)
Frame = +3 / +3
Query: 339 SGSTNLQAPLSVRLTSGSGRVLVASNVIPAGWQPGRTYRSVVNF 470
+ L+AP S++LTS SGR LV +NVI A W G TYRS+VN+
Sbjct: 453 NNGNRLRAPFSLQLTSDSGRKLVINNVILANWNAGATYRSLVNY 584
Score = 51.9 bits (107), Expect(2) = 4e-024
Identities = 22/41 (53%), Positives = 26/41 (63%)
Frame = -3 / -1
Query: 476 SSEVDDGAVGSAGLPSGGDDVAGDEDPAGARGEADRQGGLQ 354
S V GAV +G+P G DDV DE PAG GE +R+GG Q
Sbjct: 590 SGVVHQGAVRGSGIPVGEDDVVDDELPAGVGGELEREGGAQ 468
>gb|BQ759881.1|BQ759881 EBpi05_SQ004_P16_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ004_P16 5', mRNA sequence
Length = 500
Score = 136 bits (292), Expect(2) = 6e-043
Identities = 49/98 (50%), Positives = 71/98 (72%)
Frame = +3 / +2
Query: 51 HFDLSGTAFGAMAKPGQADQLRNAGRLQVQYIRVACNWNGLDIAFRVDAGSNANYLAMAI 230
HFDLSGTAFGAMAKPG +++LR++G + +Q+ RV C + GL + F V+ GSN Y A+ +
Sbjct: 5 HFDLSGTAFGAMAKPGLSEKLRHSGIIDIQFKRVPCEFPGLKVTFHVEQGSNPVYFAVLV 184
Query: 231 EYESGDGDLRAXELKQSGAAAWAPMQRSWGAVWQYKSG 344
EYE GDGD+ +L ++ + W PM+ SWG++W+ SG
Sbjct: 185 EYEDGDGDVVQVDLMEANSGTWTPMRESWGSIWRLDSG 298
Score = 57.4 bits (119), Expect(2) = 6e-043
Identities = 22/39 (56%), Positives = 28/39 (71%)
Frame = +3 / +2
Query: 354 LQAPLSVRLTSGSGRVLVASNVIPAGWQPGRTYRSVVNF 470
LQAP S+R+T+ SG+ LVA VIPA W P YRS+V +
Sbjct: 305 LQAPFSMRITNESGKTLVADKVIPANWAPSTFYRSIVQY 421
>gb|BG368652.1|BG368652 HVSMEi0020B24f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0020B24f, mRNA sequence
Length = 679
Score = 149 bits (321), Expect(2) = 5e-040
Identities = 59/81 (72%), Positives = 67/81 (82%)
Frame = +3 / +1
Query: 42 EPVHFDLSGTAFGAMAKPGQADQLRNAGRLQVQYIRVACNWNGLDIAFRVDAGSNANYLA 221
EPVHFDLSGTAFG MAKPGQADQLR AGRLQ+QY R CNW G+ +AF+VDAGSN YLA
Sbjct: 367 EPVHFDLSGTAFGGMAKPGQADQLRAAGRLQIQYTRFPCNWRGMHVAFKVDAGSNPYYLA 546
Query: 222 MAIEYESGDGDLRAXELKQSG 284
+ IEYE GDGDL + EL ++G
Sbjct: 547 VLIEYEDGDGDLSSVELMENG 609
Score = 109 bits (233), Expect(2) = 2e-024
Identities = 49/75 (65%), Positives = 52/75 (69%)
Frame = -1 / -3
Query: 229 MAMAR*LAFEPASTLKAMSKPFQLHATRMYWTCRRPAFRSWSAWPGFAMAPNAVPLRSKC 50
M+ AR* EPASTLKA P QLH R+YW RRPA RSWSAWPGFAM PNAVPLRSK
Sbjct: 554 MSTAR**GLEPASTLKATCIPRQLHGNRVYWIWRRPAARSWSAWPGFAMPPNAVPLRSKW 375
Query: 49 TGSTWPQRRGTGRVR 5
TGS+ G VR
Sbjct: 374 TGSSRHGPSGHSSVR 330
Score = 34.5 bits (69), Expect(2) = 5e-040
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +3 / +1
Query: 288 AAWAPMQRSWGAVWQYKS 341
A W M SWGAVW+Y S
Sbjct: 619 AGWTKMDPSWGAVWRYNS 672
Score = 22.6 bits (43), Expect(2) = 2e-024
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = -1 / -3
Query: 340 DLYCHTAPQE 311
+LY HTAPQ+
Sbjct: 671 ELYLHTAPQD 642
>gb|BJ463021.1|BJ463021 BJ463021 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags25g15 5', mRNA sequence
Length = 532
Score = 146 bits (313), Expect(2) = 1e-038
Identities = 56/102 (54%), Positives = 74/102 (72%)
Frame = +3 / +3
Query: 42 EPVHFDLSGTAFGAMAKPGQADQLRNAGRLQVQYIRVACNWNGLDIAFRVDAGSNANYLA 221
EP HFD+SGTA GAMAKPG AD+LR G +++QY RV C + G++IAFRVD GSN Y
Sbjct: 153 EPCHFDMSGTALGAMAKPGMADKLRAGGVIRMQYKRVPCKYPGVNIAFRVDQGSNPFYFK 332
Query: 222 MAIEYESGDGDLRAXELKQSGAAAWAPMQRSWGAVWQYKSGS 347
IE+E DGDL+A LK++G+ AW M + WGA+W+ +G+
Sbjct: 333 TLIEFEDDDGDLKAVALKEAGSGAWTQMTQDWGALWRLNNGN 458
Score = 33.6 bits (67), Expect(2) = 1e-038
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +3 / +3
Query: 339 SGSTNLQAPLSVRLTSGSGRVLVASNV 419
+ L+AP S+RLT SGR LV +NV
Sbjct: 447 NNGNRLRAPFSLRLTXDSGRKLVXNNV 527
>gb|BG368109.2|BG368109 HVSMEi0015L12f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0015L12f, mRNA sequence
Length = 871
Score = 152 bits (326), Expect(2) = 5e-038
Identities = 60/81 (74%), Positives = 68/81 (83%)
Frame = +3 / +1
Query: 42 EPVHFDLSGTAFGAMAKPGQADQLRNAGRLQVQYIRVACNWNGLDIAFRVDAGSNANYLA 221
EPVHFDLSGTAFG MAKPGQADQLR AGRLQ+QY RV CNW G+ +AF+VDAGSN YLA
Sbjct: 277 EPVHFDLSGTAFGGMAKPGQADQLRAAGRLQIQYTRVPCNWRGMHVAFKVDAGSNPYYLA 456
Query: 222 MAIEYESGDGDLRAXELKQSG 284
+ IEYE GDGDL + EL ++G
Sbjct: 457 VLIEYEDGDGDLSSVELMENG 519
Score = 111 bits (238), Expect = 3e-024
Identities = 50/75 (66%), Positives = 53/75 (70%)
Frame = -1 / -3
Query: 229 MAMAR*LAFEPASTLKAMSKPFQLHATRMYWTCRRPAFRSWSAWPGFAMAPNAVPLRSKC 50
M+ AR* EPASTLKA P QLH TR+YW RRPA RSWSAWPGFAM PNAVPLRSK
Sbjct: 464 MSTAR**GLEPASTLKATCIPRQLHGTRVYWIWRRPAARSWSAWPGFAMPPNAVPLRSKW 285
Query: 49 TGSTWPQRRGTGRVR 5
TGS+ G VR
Sbjct: 284 TGSSRHGPSGHSSVR 240
Score = 25.4 bits (49), Expect(2) = 5e-038
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +3 / +3
Query: 309 RSWGAVWQYKS 341
RSWGAVW+ S
Sbjct: 552 RSWGAVWRVNS 584
>gb|AV917139.1|AV917139 AV917139 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20o17 5', mRNA sequence
Length = 590
Score = 119 bits (255), Expect(2) = 1e-037
Identities = 46/82 (56%), Positives = 63/82 (76%)
Frame = +3 / +1
Query: 39 VEPVHFDLSGTAFGAMAKPGQADQLRNAGRLQVQYIRVACNWNGLDIAFRVDAGSNANYL 218
V P HFDLSGTAFG +AKPG+ D+LR+AG + +Q+ RVAC + GL + F V+ GSNA Y+
Sbjct: 70 VAPYHFDLSGTAFGKLAKPGRNDELRHAGIIDIQFTRVACEFPGLKVGFHVEEGSNAVYM 249
Query: 219 AMAIEYESGDGDLRAXELKQSG 284
A+ +EYE+GDGD+ +L +SG
Sbjct: 250 AILVEYENGDGDVVQVDLMESG 315
Score = 56.5 bits (117), Expect(2) = 1e-037
Identities = 21/39 (53%), Positives = 28/39 (71%)
Frame = +3 / +1
Query: 354 LQAPLSVRLTSGSGRVLVASNVIPAGWQPGRTYRSVVNF 470
LQAP S+R+ + SG+ LVA NVIP W+P YRS+V +
Sbjct: 397 LQAPFSIRIRNESGKTLVARNVIPKNWRPNTFYRSIVQY 513
>gb|BF260026.3|BF260026 HVSMEf0020O13f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0020O13f, mRNA sequence
Length = 535
Score = 113 bits (241), Expect(2) = 7e-037
Identities = 44/92 (47%), Positives = 65/92 (70%)
Frame = +3 / +1
Query: 66 GTAFGAMAKPGQADQLRNAGRLQVQYIRVACNWNGLDIAFRVDAGSNANYLAMAIEYESG 245
GTAFGA+AK G ++LR++G + +Q+ RV CN+ GL I F V GSNA YLA+ IEYE
Sbjct: 1 GTAFGALAKSGLNEKLRHSGIIDIQFRRVPCNFPGLKINFHVVEGSNAVYLAVLIEYEDM 180
Query: 246 DGDLRAXELKQSGAAAWAPMQRSWGAVWQYKS 341
DGD+ ++K++ + +W M+ SWG++W+ S
Sbjct: 181 DGDVIQVDMKEANSGSWMAMRESWGSIWRMDS 276
Score = 60.6 bits (126), Expect(2) = 7e-037
Identities = 24/39 (61%), Positives = 29/39 (74%)
Frame = +3 / +1
Query: 354 LQAPLSVRLTSGSGRVLVASNVIPAGWQPGRTYRSVVNF 470
LQ P S+R+TS SG+ LVA+NVIPA W+P YRS V F
Sbjct: 286 LQGPFSMRITSDSGKKLVANNVIPANWRPNTDYRSFVQF 402
>gb|BG368126.2|BG368126 HVSMEi0015M21f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0015M21f, mRNA sequence
Length = 817
Score = 152 bits (326), Expect = 2e-036
Identities = 60/81 (74%), Positives = 68/81 (83%)
Frame = +3 / +3
Query: 42 EPVHFDLSGTAFGAMAKPGQADQLRNAGRLQVQYIRVACNWNGLDIAFRVDAGSNANYLA 221
EPVHFDLSGTAFG MAKPGQADQLR AGRLQ+QY RV CNW G+ +AF+VDAGSN YLA
Sbjct: 417 EPVHFDLSGTAFGGMAKPGQADQLRAAGRLQIQYTRVPCNWRGMHVAFKVDAGSNPYYLA 596
Query: 222 MAIEYESGDGDLRAXELKQSG 284
+ IEYE GDGDL + EL ++G
Sbjct: 597 VLIEYEDGDGDLSSVELMENG 659
Score = 111 bits (238), Expect = 3e-024
Identities = 50/75 (66%), Positives = 53/75 (70%)
Frame = -1 / -1
Query: 229 MAMAR*LAFEPASTLKAMSKPFQLHATRMYWTCRRPAFRSWSAWPGFAMAPNAVPLRSKC 50
M+ AR* EPASTLKA P QLH TR+YW RRPA RSWSAWPGFAM PNAVPLRSK
Sbjct: 604 MSTAR**GLEPASTLKATCIPRQLHGTRVYWIWRRPAARSWSAWPGFAMPPNAVPLRSKW 425
Query: 49 TGSTWPQRRGTGRVR 5
TGS+ G VR
Sbjct: 424 TGSSRHGPSGHSSVR 380
>gb|CK122346.1|CK122346 BES1824102p12 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010P122 5-PRIME, mRNA sequence
Length = 717
Score = 102 bits (218), Expect(3) = 2e-036
Identities = 41/81 (50%), Positives = 56/81 (69%)
Frame = +3 / +1
Query: 39 VEPVHFDLSGTAFGAMAKPGQADQLRNAGRLQVQYIRVACNWNGLDIAFRVDAGSNANYL 218
V P HFDLSGTAFG +AKPG D+LR++G + +++ RV C + GL I F V+ SN Y
Sbjct: 148 VAPYHFDLSGTAFGRLAKPGLNDRLRHSGIIDIEFTRVPCEFPGLKIGFHVEEYSNPVYF 327
Query: 219 AMAIEYESGDGDLRAXELKQS 281
A+ +EYE GDGD+ +L +S
Sbjct: 328 AVLVEYEDGDGDVVQVDLMES 390
Score = 56.1 bits (116), Expect(3) = 2e-036
Identities = 23/51 (45%), Positives = 34/51 (66%)
Frame = +3 / +1
Query: 354 LQAPLSVRLTSGSGRVLVASNVIPAGWQPGRTYRSVVNFGGNHA*RVILRM 506
LQAP S+R+ + SG+ LVA+ VIPA W+P YRS V + + RV++ +
Sbjct: 469 LQAPFSIRIRNESGKTLVANKVIPANWRPNTFYRSFVQYS*SPFTRVLVML 621
Score = 31.3 bits (62), Expect(3) = 2e-036
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3 / +1
Query: 267 ELKQSGAAAWAPMQRSWGAVWQYKS 341
E + G W M+ SWG+VW+ S
Sbjct: 385 ESRGPGGGKWTRMRESWGSVWRLDS 459
>gb|BE060246.3|BE060246 HVSMEg0011L08f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0011L08f, mRNA sequence
Length = 544
Score = 102 bits (218), Expect(3) = 2e-036
Identities = 41/81 (50%), Positives = 56/81 (69%)
Frame = +3 / +2
Query: 39 VEPVHFDLSGTAFGAMAKPGQADQLRNAGRLQVQYIRVACNWNGLDIAFRVDAGSNANYL 218
V P HFDLSGTAFG +AKPG D+LR++G + +++ RV C + GL I F V+ SN Y
Sbjct: 20 VAPYHFDLSGTAFGRLAKPGLNDRLRHSGIIDIEFTRVPCEFPGLKIGFHVEEYSNPVYF 199
Query: 219 AMAIEYESGDGDLRAXELKQS 281
A+ +EYE GDGD+ +L +S
Sbjct: 200 AVLVEYEDGDGDVVQVDLMES 262
Score = 56.1 bits (116), Expect(3) = 2e-036
Identities = 23/51 (45%), Positives = 34/51 (66%)
Frame = +3 / +2
Query: 354 LQAPLSVRLTSGSGRVLVASNVIPAGWQPGRTYRSVVNFGGNHA*RVILRM 506
LQAP S+R+ + SG+ LVA+ VIPA W+P YRS V + + RV++ +
Sbjct: 341 LQAPFSIRIRNESGKTLVANKVIPANWRPNTFYRSFVQYS*SPFTRVLVML 493
Score = 31.3 bits (62), Expect(3) = 2e-036
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3 / +2
Query: 267 ELKQSGAAAWAPMQRSWGAVWQYKS 341
E + G W M+ SWG+VW+ S
Sbjct: 257 ESRGPGGGKWTRMRESWGSVWRLDS 331
>gb|CV058074.1|CV058074 BNEL34a7 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL34a7 5' similar to Oryza sativa
beta-expansin, mRNA sequence
Length = 630
Score = 107 bits (229), Expect(3) = 6e-036
Identities = 42/81 (51%), Positives = 60/81 (74%)
Frame = +3 / +3
Query: 51 HFDLSGTAFGAMAKPGQADQLRNAGRLQVQYIRVACNWNGLDIAFRVDAGSNANYLAMAI 230
HFDLSGTAFGAMAK G+ D+LR+AG + +Q+ RV C + GL + F V+ GSN Y+A+ +
Sbjct: 3 HFDLSGTAFGAMAKYGRNDELRHAGIINMQFKRVPCQYPGLTVTFHVEEGSNPFYMAILV 182
Query: 231 EYESGDGDLRAXELKQSGAAA 293
EYE+GDGD++ ++ +S A
Sbjct: 183 EYENGDGDVKQLDIMESRPGA 245
Score = 48.7 bits (100), Expect(3) = 6e-036
Identities = 18/39 (46%), Positives = 26/39 (66%)
Frame = +3 / +3
Query: 354 LQAPLSVRLTSGSGRVLVASNVIPAGWQPGRTYRSVVNF 470
+ P S+R+T+ SG+ LVA VI W+P +TY S+V F
Sbjct: 336 MHGPFSLRVTNESGKTLVADQVIXGDWKPNKTYSSLVQF 452
Score = 32.2 bits (64), Expect(3) = 6e-036
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +3 / +3
Query: 273 KQSGAAAWAPMQRSWGAVWQ 332
K + W PM+ SWG++W+
Sbjct: 258 KMTPTGQWVPMKESWGSIWR 317
>gb|BF257093.3|BF257093 HVSMEf0011N11f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0011N11f, mRNA sequence
Length = 816
Score = 133 bits (285), Expect(2) = 5e-035
Identities = 50/102 (49%), Positives = 72/102 (70%)
Frame = +3 / +2
Query: 42 EPVHFDLSGTAFGAMAKPGQADQLRNAGRLQVQYIRVACNWNGLDIAFRVDAGSNANYLA 221
E HFD+SGT+ GAMAKPG AD+LR +G +++QY RV C + G++IAF+VD GSN YL
Sbjct: 209 EAAHFDMSGTSMGAMAKPGMADKLRASGIVKIQYKRVPCKYPGMNIAFKVDQGSNPFYLE 388
Query: 222 MAIEYESGDGDLRAXELKQSGAAAWAPMQRSWGAVWQYKSGS 347
+ IE+E DGDL +L ++ W PM ++WGA+++ S +
Sbjct: 389 VLIEFEDDDGDLNTVDLMEANCGTWTPMVQNWGALYRLNSNT 514
Score = 34.1 bits (68), Expect(2) = 5e-035
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +3 / +1
Query: 414 NVIPAGWQPGRTYRSVVNF 470
NV P W+ G TYRS+VN+
Sbjct: 586 NVFPVSWKAGATYRSLVNY 642
>gb|CK123980.1|CK123980 BES1824106f16 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010F166 5-PRIME, mRNA sequence
Length = 750
Score = 119 bits (255), Expect(2) = 5e-032
Identities = 46/82 (56%), Positives = 63/82 (76%)
Frame = +3 / +1
Query: 39 VEPVHFDLSGTAFGAMAKPGQADQLRNAGRLQVQYIRVACNWNGLDIAFRVDAGSNANYL 218
V P HFDLSGTAFG +AKPG+ D+LR+AG + +Q+ RVAC + GL + F V+ GSNA Y+
Sbjct: 265 VAPYHFDLSGTAFGKLAKPGRNDELRHAGIIDIQFTRVACEFPGLKVGFHVEEGSNAVYM 444
Query: 219 AMAIEYESGDGDLRAXELKQSG 284
A+ +EYE+GDGD+ +L +SG
Sbjct: 445 AILVEYENGDGDVVQVDLMESG 510
Score = 37.7 bits (76), Expect(2) = 5e-032
Identities = 15/24 (62%), Positives = 19/24 (79%)
Frame = +3 / +1
Query: 354 LQAPLSVRLTSGSGRVLVASNVIP 425
LQAP S+R+ + SG+ LVA NVIP
Sbjct: 592 LQAPFSIRIRNESGKTLVARNVIP 663
>gb|BF254126.2|BF254126 HVSMEf0003B13f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0003B13f, mRNA sequence
Length = 789
Score = 119 bits (255), Expect(2) = 1e-031
Identities = 46/82 (56%), Positives = 63/82 (76%)
Frame = +3 / +2
Query: 39 VEPVHFDLSGTAFGAMAKPGQADQLRNAGRLQVQYIRVACNWNGLDIAFRVDAGSNANYL 218
V P HFDLSGTAFG +AKPG+ D+LR+AG + +Q+ RVAC + GL + F V+ GSNA Y+
Sbjct: 209 VAPYHFDLSGTAFGKLAKPGRNDELRHAGIIDIQFTRVACEFPGLKVGFHVEEGSNAVYM 388
Query: 219 AMAIEYESGDGDLRAXELKQSG 284
A+ +EYE+GDGD+ +L +SG
Sbjct: 389 AILVEYENGDGDVVQVDLMESG 454
Score = 36.8 bits (74), Expect(2) = 1e-031
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = +3 / +2
Query: 354 LQAPLSVRLTSGSGRVLVASNVIPAGWQPGRTYRS 458
LQAP S+R+ + SG+ LVA VIP +P Y S
Sbjct: 536 LQAPFSIRIRNESGQTLVAR*VIPKKGRPNTLYCS 640
>gb|AV928430.1|AV928430 AV928430 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basdg18 3', mRNA sequence
Length = 704
Score = 92.7 bits (196), Expect(2) = 9e-031
Identities = 35/78 (44%), Positives = 54/78 (69%)
Frame = +3 / -2
Query: 108 QLRNAGRLQVQYIRVACNWNGLDIAFRVDAGSNANYLAMAIEYESGDGDLRAXELKQSGA 287
+LR++G + +Q+ RV CN+ GL I F V GSNA YLA+ IEYE DGD+ ++K++ +
Sbjct: 703 KLRHSGIIDIQFRRVPCNFPGLKINFHVVEGSNAVYLAVLIEYEDMDGDVIQVDMKEANS 524
Query: 288 AAWAPMQRSWGAVWQYKS 341
+W M+ SWG++W+ S
Sbjct: 523 GSWMAMRESWGSIWRMDS 470
Score = 60.6 bits (126), Expect(2) = 9e-031
Identities = 24/39 (61%), Positives = 29/39 (74%)
Frame = +3 / -2
Query: 354 LQAPLSVRLTSGSGRVLVASNVIPAGWQPGRTYRSVVNF 470
LQ P S+R+TS SG+ LVA+NVIPA W+P YRS V F
Sbjct: 460 LQGPFSMRITSDSGKKLVANNVIPANWRPNTDYRSFVQF 344
>gb|CA019924.1|CA019924 HV13L18r HV Hordeum vulgare subsp. vulgare cDNA clone HV13L18
5-PRIME, mRNA sequence
Length = 549
Score = 133 bits (285), Expect = 1e-030
Identities = 50/102 (49%), Positives = 72/102 (70%)
Frame = +3 / +3
Query: 42 EPVHFDLSGTAFGAMAKPGQADQLRNAGRLQVQYIRVACNWNGLDIAFRVDAGSNANYLA 221
E HFD+SGT+ GAMAKPG AD+LR +G +++QY RV C + G++IAF+VD GSN YL
Sbjct: 225 EAAHFDMSGTSMGAMAKPGMADKLRASGIVKIQYKRVPCKYPGMNIAFKVDQGSNPFYLE 404
Query: 222 MAIEYESGDGDLRAXELKQSGAAAWAPMQRSWGAVWQYKSGS 347
+ IE+E DGDL +L ++ W PM ++WGA+++ S +
Sbjct: 405 VLIEFEDDDGDLNTVDLMEANCGTWTPMVQNWGALYRLNSNT 530
>gb|CV055940.1|CV055940 BNEL12B5 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL12B5 5' similar to Oryza sativa
beta-expansin, mRNA sequence
Length = 614
Score = 85.4 bits (180), Expect(3) = 2e-030
Identities = 33/72 (45%), Positives = 51/72 (70%)
Frame = +3 / -2
Query: 78 GAMAKPGQADQLRNAGRLQVQYIRVACNWNGLDIAFRVDAGSNANYLAMAIEYESGDGDL 257
GAMAK G+ D+LR+AG + +Q+ RV C + GL + F V+ GSN Y+A+ +EYE+GDGD+
Sbjct: 598 GAMAKYGRNDELRHAGIINMQFKRVPCQYPGLTVTFHVEEGSNPFYMAILVEYENGDGDV 419
Query: 258 RAXELKQSGAAA 293
+ ++ +S A
Sbjct: 418 KQLDIMESRPGA 383
Score = 52.8 bits (109), Expect(3) = 2e-030
Identities = 19/39 (48%), Positives = 27/39 (69%)
Frame = +3 / -2
Query: 354 LQAPLSVRLTSGSGRVLVASNVIPAGWQPGRTYRSVVNF 470
+ P S+R+T+ SG+ LVA VIP W+P +TY S+V F
Sbjct: 292 MHGPFSLRVTNESGKTLVADQVIPGDWKPNKTYSSLVQF 176
Score = 32.2 bits (64), Expect(3) = 2e-030
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +3 / -2
Query: 273 KQSGAAAWAPMQRSWGAVWQ 332
K + W PM+ SWG++W+
Sbjct: 370 KMTPTGQWVPMKESWGSIWR 311
>gb|BQ465138.1|BQ465138 HU02M06r HU Hordeum vulgare subsp. vulgare cDNA clone HU02M06
5-PRIME, mRNA sequence
Length = 623
Score = 119 bits (255), Expect(2) = 2e-030
Identities = 46/82 (56%), Positives = 63/82 (76%)
Frame = +3 / +2
Query: 39 VEPVHFDLSGTAFGAMAKPGQADQLRNAGRLQVQYIRVACNWNGLDIAFRVDAGSNANYL 218
V P HFDLSGTAFG +AKPG+ D+LR+AG + +Q+ RVAC + GL + F V+ GSNA Y+
Sbjct: 230 VAPYHFDLSGTAFGKLAKPGRNDELRHAGIIDIQFTRVACEFPGLKVGFHVEEGSNAVYM 409
Query: 219 AMAIEYESGDGDLRAXELKQSG 284
A+ +EYE+GDGD+ +L +SG
Sbjct: 410 AILVEYENGDGDVVQVDLMESG 475
Score = 32.7 bits (65), Expect(2) = 2e-030
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = +3 / +3
Query: 354 LQAPLSVRLTSGSGRVLVASNV 419
LQAP S+R+ + SG+ LVA NV
Sbjct: 558 LQAPFSIRIRNESGKTLVARNV 623
>gb|CK122737.1|CK122737 BES1824105j22 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010J225 5-PRIME, mRNA sequence
Length = 776
Score = 115 bits (245), Expect(3) = 3e-030
Identities = 44/80 (55%), Positives = 61/80 (76%)
Frame = +3 / +1
Query: 39 VEPVHFDLSGTAFGAMAKPGQADQLRNAGRLQVQYIRVACNWNGLDIAFRVDAGSNANYL 218
V P HFDLSGTAFG +AKPG+ D+LR+AG + +Q+ RVAC + GL + F V+ GSNA Y+
Sbjct: 382 VAPYHFDLSGTAFGKLAKPGRNDELRHAGIIDIQFTRVACEFPGLKVGFHVEEGSNAVYM 561
Query: 219 AMAIEYESGDGDLRAXELKQ 278
A+ +EYE+GDGD+ +L +
Sbjct: 562 AILVEYENGDGDVVQVDLME 621
Score = 27.2 bits (53), Expect(3) = 3e-030
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3 / +3
Query: 354 LQAPLSVRLTSGSGRVLVASNV 419
LQ P S+R+ + SG+ L A NV
Sbjct: 711 LQXPXSIRIRNESGKKLXARNV 776
Score = 27.2 bits (53), Expect(3) = 3e-030
Identities = 7/17 (41%), Positives = 10/17 (58%)
Frame = +3 / +3
Query: 279 SGAAAWAPMQRSWGAVW 329
+ A W M SWG++W
Sbjct: 639 AAAGRWTRMPESWGSIW 689
>gb|BF622288.3|BF622288 HVSMEa0002I16f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0002I16f, mRNA sequence
Length = 851
Score = 106 bits (226), Expect(2) = 3e-030
Identities = 43/81 (53%), Positives = 58/81 (71%)
Frame = +3 / +2
Query: 39 VEPVHFDLSGTAFGAMAKPGQADQLRNAGRLQVQYIRVACNWNGLDIAFRVDAGSNANYL 218
V HFDLSGTAFGAMAK G+ ++LR+AG + +Q+ RV C + GL + F V GSN YL
Sbjct: 290 VSRFHFDLSGTAFGAMAKDGRNEELRHAGIIDMQFRRVPCQYPGLTVTFHVQHGSNPYYL 469
Query: 219 AMAIEYESGDGDLRAXELKQS 281
A+ +EYE+GDGD+ ++ QS
Sbjct: 470 AILVEYENGDGDVDQVDMMQS 532
Score = 45.1 bits (92), Expect(2) = 3e-030
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +3 / +2
Query: 354 LQAPLSVRLTSGSGRVLVASNVIPAGWQPGRTYRSVV 464
+Q P S+R+T+ SG+ LVA V P W+P Y S +
Sbjct: 638 MQGPFSLRITNESGKTLVADQVNPGDWEPNEIYSSFI 748
>gb|BE454367.2|BE454367 HVSMEh0093N18f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0093N18f, mRNA sequence
Length = 870
Score = 102 bits (218), Expect(3) = 5e-030
Identities = 41/81 (50%), Positives = 56/81 (69%)
Frame = +3 / +1
Query: 39 VEPVHFDLSGTAFGAMAKPGQADQLRNAGRLQVQYIRVACNWNGLDIAFRVDAGSNANYL 218
V P HFDLSGTAFG +AKPG D+LR++G + +++ RV C + GL I F V+ SN Y
Sbjct: 31 VAPYHFDLSGTAFGRLAKPGLNDRLRHSGIIDIEFTRVPCEFPGLKIGFHVEEYSNPVYF 210
Query: 219 AMAIEYESGDGDLRAXELKQS 281
A+ +EYE GDGD+ +L +S
Sbjct: 211 AVLVEYEDGDGDVVQVDLMES 273
Score = 35.4 bits (71), Expect(3) = 5e-030
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +3 / +1
Query: 354 LQAPLSVRLTSGSGRVLVASNVIPAGWQPGRTYRSVVNFGG 476
LQAP +++ G L S +P W+PG R V GG
Sbjct: 352 LQAPFCIQVRDKCGETLGGSMGVPGRWRPGTLCRCVEQTGG 474
Score = 30.4 bits (60), Expect(3) = 5e-030
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +3 / +1
Query: 267 ELKQSGAAAWAPMQRSWGAVWQ 332
E + G W M+ SWG+VW+
Sbjct: 268 ESRGPGGGKWTRMRESWGSVWR 333
>gb|BI956772.1|BI956772 HVSMEn0005E06f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0005E06f, mRNA sequence
Length = 796
Score = 128 bits (275), Expect = 2e-029
Identities = 48/102 (47%), Positives = 70/102 (68%)
Frame = +3 / +1
Query: 39 VEPVHFDLSGTAFGAMAKPGQADQLRNAGRLQVQYIRVACNWNGLDIAFRVDAGSNANYL 218
V HFDLSGTAFGAMAKPG +++LR++G + +Q+ RV C + GL + F V+ GSN Y
Sbjct: 313 VAKYHFDLSGTAFGAMAKPGLSEKLRHSGIIDIQFKRVPCEFPGLKVTFHVEQGSNPVYF 492
Query: 219 AMAIEYESGDGDLRAXELKQSGAAAWAPMQRSWGAVWQYKSG 344
A+ +EY GDGD+ +L ++ + W PM+ SWG++ + SG
Sbjct: 493 AVLVEYXDGDGDMVQVDLMEANSCTWTPMRESWGSILRLDSG 618
>gb|CB881182.1|CB881182 HM09A07w HM Hordeum vulgare subsp. vulgare cDNA clone HM09A07
3-PRIME, mRNA sequence
Length = 680
Score = 67.5 bits (141), Expect(3) = 9e-029
Identities = 23/55 (41%), Positives = 36/55 (65%)
Frame = +3 / -3
Query: 168 GLDIAFRVDAGSNANYLAMAIEYESGDGDLRAXELKQSGAAAWAPMQRSWGAVWQ 332
G + F V+ GS+ NYLA+ +++ GDGD+ A ++K G W ++ SWGAVW+
Sbjct: 546 GTKVNFHVEKGSSPNYLALVVKFLQGDGDVVAVDIKPKGKDKWIELKESWGAVWR 382
Score = 57.0 bits (118), Expect(3) = 9e-029
Identities = 21/38 (55%), Positives = 29/38 (76%)
Frame = +3 / -3
Query: 51 HFDLSGTAFGAMAKPGQADQLRNAGRLQVQYIRVACNW 164
HFDLSG AFG MAK GQ +LR+AG +++++ RV C +
Sbjct: 666 HFDLSGHAFGTMAKKGQEQKLRDAGEVEIKFRRVKCKY 553
Score = 40.0 bits (81), Expect(3) = 9e-029
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +3 / -3
Query: 354 LQAPLSVRLTSGSGRVLVASNVIPAGWQPGRTYRS 458
L P SVR T+ G VA +VIP GW+P +Y +
Sbjct: 363 LIGPFSVRYTTEGGTKTVAEDVIPEGWKPDTSYET 259
>gb|BE193443.3|BE193443 HVSMEh0081A10f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0081A10f, mRNA sequence
Length = 749
Score = 105 bits (225), Expect(2) = 2e-028
Identities = 41/53 (77%), Positives = 45/53 (84%)
Frame = +3 / +3
Query: 42 EPVHFDLSGTAFGAMAKPGQADQLRNAGRLQVQYIRVACNWNGLDIAFRVDAG 200
EPVHFDLSGTAFG MAKPGQADQLR AGRLQ+QY V CNW G+ +A +VDAG
Sbjct: 414 EPVHFDLSGTAFGGMAKPGQADQLRAAGRLQIQYTPVPCNWRGMHVALQVDAG 572
Score = 39.6 bits (80), Expect(2) = 2e-028
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = +3 / +1
Query: 183 FRVDAGSNANYLAMAIEYESGDGDLRAXELKQSG 284
FR G N YLA AI+YE GDG+ + EL ++G
Sbjct: 556 FRWTPGFNPYYLAGAIQYEDGDGEPSSGELMENG 657
>gb|BF628930.2|BF628930 HVSMEb0009C23f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0009C23f, mRNA sequence
Length = 762
Score = 124 bits (266), Expect = 4e-028
Identities = 50/101 (49%), Positives = 70/101 (69%)
Frame = +3 / +3
Query: 39 VEPVHFDLSGTAFGAMAKPGQADQLRNAGRLQVQYIRVACNWNGLDIAFRVDAGSNANYL 218
V HFDLSGTAFGA+AK G ++LR++G + +Q+ RV CN+ GL I F V GSNA YL
Sbjct: 435 VAQYHFDLSGTAFGALAKSGLNEKLRHSGIIDIQFRRVPCNFPGLKINFHVVEGSNAVYL 614
Query: 219 AMAIEYESGDGDLRAXELKQSGAAAWAPMQRSWGAVWQYKS 341
A+ IEYE DGD+ ++K + + +W M+ SWG++W+ S
Sbjct: 615 AVLIEYEDMDGDVIQVDMKGANSGSWMAMRESWGSIWRMDS 737
>gb|BQ459628.1|BQ459628 HA08J01r HA Hordeum vulgare subsp. vulgare cDNA clone HA08J01
5-PRIME, mRNA sequence
Length = 470
Score = 56.1 bits (116), Expect(4) = 6e-028
Identities = 23/51 (45%), Positives = 34/51 (66%)
Frame = +3 / +1
Query: 354 LQAPLSVRLTSGSGRVLVASNVIPAGWQPGRTYRSVVNFGGNHA*RVILRM 506
LQAP S+R+ + SG+ LVA+ VIPA W+P YRS V + + RV++ +
Sbjct: 301 LQAPFSIRIRNESGKTLVANKVIPANWRPNTFYRSFVQYS*SPFTRVLVML 453
Score = 51.0 bits (105), Expect(4) = 6e-028
Identities = 21/45 (46%), Positives = 28/45 (62%)
Frame = +3 / +1
Query: 147 RVACNWNGLDIAFRVDAGSNANYLAMAIEYESGDGDLRAXELKQS 281
RV C + GL I F V+ SN Y A+ +EYE GDGD+ +L +S
Sbjct: 88 RVPCEFPGLKIGFHVEEYSNPVYFAVLVEYEDGDGDVVQVDLMES 222
Score = 40.5 bits (82), Expect(4) = 6e-028
Identities = 15/27 (55%), Positives = 22/27 (81%)
Frame = +3 / +2
Query: 60 LSGTAFGAMAKPGQADQLRNAGRLQVQ 140
LSGTAFG +AKPG D+LR++G + ++
Sbjct: 2 LSGTAFGRLAKPGLNDRLRHSGIIDIE 82
Score = 31.3 bits (62), Expect(4) = 6e-028
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3 / +1
Query: 267 ELKQSGAAAWAPMQRSWGAVWQYKS 341
E + G W M+ SWG+VW+ S
Sbjct: 217 ESRGPGGGKWTRMRESWGSVWRLDS 291
>gb|BM097618.2|BM097618 EBem04_SQ002_D15_R embryo, 12 DPA, no treatment, cv Optic, EBem04
Hordeum vulgare subsp. vulgare cDNA clone
EBem04_SQ002_D15 5', mRNA sequence
Length = 477
Score = 112 bits (240), Expect(2) = 7e-028
Identities = 47/88 (53%), Positives = 61/88 (69%)
Frame = +3 / +3
Query: 39 VEPVHFDLSGTAFGAMAKPGQADQLRNAGRLQVQYIRVACNWNGLDIAFRVDAGSNANYL 218
V HFDLSGTAFGAMAK G+ D+LR+AG + +Q+ RV C + GL + FRV GSN NYL
Sbjct: 114 VSRYHFDLSGTAFGAMAKYGRNDELRHAGIIDMQFKRVPCQYPGLTVTFRVQHGSNPNYL 293
Query: 219 AMAIEYESGDGDLRAXELKQSGAAAWAP 302
A+ +EYE GDGD+ ++ +S AP
Sbjct: 294 AILVEYEDGDGDVAQVDIMESRLPDRAP 377
Score = 30.9 bits (61), Expect(2) = 7e-028
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = +3 / +3
Query: 294 WAPMQRSWGAVWQ 332
W PM+ SWG++W+
Sbjct: 387 WTPMRESWGSIWR 425
>gb|BI959138.1|BI959138 HVSMEn0018F10f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0018F10f, mRNA sequence
Length = 669
Score = 111 bits (238), Expect(2) = 2e-027
Identities = 43/86 (50%), Positives = 60/86 (69%)
Frame = +3 / +3
Query: 39 VEPVHFDLSGTAFGAMAKPGQADQLRNAGRLQVQYIRVACNWNGLDIAFRVDAGSNANYL 218
V HFDLSGTAFGAMAKPG +++LR++G + +Q+ RV C + GL + F V+ GSN Y
Sbjct: 330 VAKYHFDLSGTAFGAMAKPGLSEKLRHSGIIDIQFKRVPCEFPGLKVTFHVEQGSNPVYF 509
Query: 219 AMAIEYESGDGDLRAXELKQSGAAAW 296
A+ +EYE GDGDL +L ++ + W
Sbjct: 510 AVLVEYEDGDGDLVQVDLMEANSGTW 587
Score = 30.4 bits (60), Expect(2) = 2e-027
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +3 / +1
Query: 300 PMQRSWGAVWQYKSG 344
PM+ SWG++W+ +SG
Sbjct: 592 PMRESWGSIWRVESG 636
>gb|AV917082.1|AV917082 AV917082 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20l09 5', mRNA sequence
Length = 323
Score = 119 bits (255), Expect = 1e-026
Identities = 46/82 (56%), Positives = 63/82 (76%)
Frame = +3 / +2
Query: 39 VEPVHFDLSGTAFGAMAKPGQADQLRNAGRLQVQYIRVACNWNGLDIAFRVDAGSNANYL 218
V P HFDLSGTAFG +AKPG+ D+LR+AG + +Q+ RVAC + GL + F V+ GSNA Y+
Sbjct: 23 VAPYHFDLSGTAFGKLAKPGRNDELRHAGIIDIQFTRVACEFPGLKVGFHVEEGSNAVYM 202
Query: 219 AMAIEYESGDGDLRAXELKQSG 284
A+ +EYE+GDGD+ +L +SG
Sbjct: 203 AILVEYENGDGDVVQVDLMESG 268
>gb|CA019997.1|CA019997 HV14A15r HV Hordeum vulgare subsp. vulgare cDNA clone HV14A15
5-PRIME, mRNA sequence
Length = 616
Score = 119 bits (255), Expect = 1e-026
Identities = 46/82 (56%), Positives = 63/82 (76%)
Frame = +3 / +1
Query: 39 VEPVHFDLSGTAFGAMAKPGQADQLRNAGRLQVQYIRVACNWNGLDIAFRVDAGSNANYL 218
V P HFDLSGTAFG +AKPG+ D+LR+AG + +Q+ RVAC + GL + F V+ GSNA Y+
Sbjct: 313 VAPYHFDLSGTAFGKLAKPGRNDELRHAGIIDIQFTRVACEFPGLKVGFHVEEGSNAVYM 492
Query: 219 AMAIEYESGDGDLRAXELKQSG 284
A+ +EYE+GDGD+ +L +SG
Sbjct: 493 AILVEYENGDGDVVQVDLMESG 558
>gb|CV054003.1|CV054003 BNEL105f8 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL105f8 5' similar to Oryza sativa
beta-expansin, mRNA sequence
Length = 702
Score = 108 bits (230), Expect(2) = 5e-026
Identities = 43/85 (50%), Positives = 61/85 (71%)
Frame = +3 / +3
Query: 39 VEPVHFDLSGTAFGAMAKPGQADQLRNAGRLQVQYIRVACNWNGLDIAFRVDAGSNANYL 218
V HFDLSGTAFGAMAK G+ D+LR+AG + +Q+ RV C + GL + F V+ GSN Y+
Sbjct: 372 VSRYHFDLSGTAFGAMAKYGRNDELRHAGIINMQFKRVPCQYPGLTVTFHVEEGSNPFYM 551
Query: 219 AMAIEYESGDGDLRAXELKQSGAAA 293
A+ +EYE+GDGD++ ++ +S A
Sbjct: 552 AILVEYENGDGDVKQLDIMESRPGA 626
Score = 29.0 bits (57), Expect(2) = 5e-026
Identities = 7/20 (35%), Positives = 12/20 (60%)
Frame = +3 / +3
Query: 273 KQSGAAAWAPMQRSWGAVWQ 332
K + W PM+ SW ++W+
Sbjct: 639 KMTPTGQWVPMKESWXSIWR 698
>gb|CV063217.1|CV063217 BNEL87h3 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL87h3 5' similar to Oryza sativa
beta-expansin, mRNA sequence
Length = 701
Score = 105 bits (223), Expect(2) = 7e-026
Identities = 42/85 (49%), Positives = 60/85 (70%)
Frame = +3 / +3
Query: 39 VEPVHFDLSGTAFGAMAKPGQADQLRNAGRLQVQYIRVACNWNGLDIAFRVDAGSNANYL 218
V HFDLSGTAFGAMAK G+ D+LR+AG + +Q+ RV C + L + F V+ GSN Y+
Sbjct: 378 VSRYHFDLSGTAFGAMAKYGRNDELRHAGIINMQFKRVPCQYPXLTVTFHVEEGSNPFYM 557
Query: 219 AMAIEYESGDGDLRAXELKQSGAAA 293
A+ +EYE+GDGD++ ++ +S A
Sbjct: 558 AILVEYENGDGDVKQLDIMESRPGA 632
Score = 31.8 bits (63), Expect(2) = 7e-026
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +3 / +3
Query: 273 KQSGAAAWAPMQRSWGAVW 329
K + W PM+ SWG++W
Sbjct: 645 KMTPTGQWVPMKESWGSIW 701
>gb|BF253787.2|BF253787 HVSMEf0002C01f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0002C01f, mRNA sequence
Length = 823
Score = 116 bits (248), Expect = 1e-025
Identities = 45/82 (54%), Positives = 62/82 (75%)
Frame = +3 / +3
Query: 39 VEPVHFDLSGTAFGAMAKPGQADQLRNAGRLQVQYIRVACNWNGLDIAFRVDAGSNANYL 218
V P HFDLSGTAFG +AKPG+ D+LR+AG + +Q+ RVAC + GL + F V+ GSNA Y+
Sbjct: 33 VAPYHFDLSGTAFGKLAKPGRNDELRHAGIIDIQFTRVACEFPGLKVGFHVEEGSNAVYM 212
Query: 219 AMAIEYESGDGDLRAXELKQSG 284
A+ +EYE+GDGD+ +L + G
Sbjct: 213 AILVEYENGDGDVVHVDLMEYG 278
>gb|BQ459308.1|BQ459308 HA01I15r HA Hordeum vulgare subsp. vulgare cDNA clone HA01I15
5-PRIME, mRNA sequence
Length = 396
Score = 73.5 bits (154), Expect(3) = 9e-025
Identities = 26/62 (41%), Positives = 44/62 (70%)
Frame = +3 / +2
Query: 96 GQADQLRNAGRLQVQYIRVACNWNGLDIAFRVDAGSNANYLAMAIEYESGDGDLRAXELK 275
G D+LR+AG + +Q+ RV C + GL + F V+ GSN Y+A+ +EY++GDGD++ ++
Sbjct: 2 GTRDELRHAGIINMQFKRVPCQYPGLTVTFHVEEGSNPFYMAILVEYDNGDGDVKQLDIM 181
Query: 276 QS 281
+S
Sbjct: 182 ES 187
Score = 45.1 bits (92), Expect(3) = 9e-025
Identities = 16/35 (45%), Positives = 24/35 (68%)
Frame = +3 / +2
Query: 354 LQAPLSVRLTSGSGRVLVASNVIPAGWQPGRTYRS 458
++ P +R+T+ SG+ LVA VIP W+P +TY S
Sbjct: 290 MRGPFWLRVTNESGKTLVADKVIPGDWKPNKTYSS 394
Score = 32.2 bits (64), Expect(3) = 9e-025
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +3 / +2
Query: 273 KQSGAAAWAPMQRSWGAVWQ 332
K + W PM+ SWG++W+
Sbjct: 212 KMTPTGEWVPMKESWGSIWR 271
>gb|BF257559.2|BF257559 HVSMEf0013D22f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0013D22f, mRNA sequence
Length = 844
Score = 105 bits (224), Expect(2) = 6e-024
Identities = 42/80 (52%), Positives = 57/80 (71%)
Frame = +3 / +2
Query: 51 HFDLSGTAFGAMAKPGQADQLRNAGRLQVQYIRVACNWNGLDIAFRVDAGSNANYLAMAI 230
HFD+SGTAFGAMA G AD+LR+ G+L++ Y RV C +NG++I F+VDAG N YL++ I
Sbjct: 473 HFDMSGTAFGAMANRGMADRLRSDGQLKIHYARVPCEYNGMNIVFKVDAGLNPFYLSVLI 652
Query: 231 EYESGDGDLRAXELKQSGAA 290
Y + D DL ++ Q G A
Sbjct: 653 MYHARDRDLSDVDIMQGGCA 712
Score = 24.9 bits (48), Expect(2) = 6e-024
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +3 / +2
Query: 294 WAPMQRSWGAVWQYKSGSTNLQAPLSVRL 380
W ++SWGA+ S AP SVR+
Sbjct: 743 WIANKQSWGALGFLHSTPGTPPAPFSVRV 829
>gb|BF256653.2|BF256653 HVSMEf0010J19f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0010J19f, mRNA sequence
Length = 841
Score = 108 bits (230), Expect = 4e-023
Identities = 42/73 (57%), Positives = 56/73 (76%)
Frame = +3 / +2
Query: 39 VEPVHFDLSGTAFGAMAKPGQADQLRNAGRLQVQYIRVACNWNGLDIAFRVDAGSNANYL 218
V P HFDLSGTAFG +AKPG+ D+LR+AG + +Q+ RVAC + GL + F V+ GSNA Y+
Sbjct: 530 VAPYHFDLSGTAFGKLAKPGRNDELRHAGIIDIQFTRVACEFPGLKVGFHVEEGSNAVYM 709
Query: 219 AMAIEYESGDGDL 257
A+ +E E+ DGDL
Sbjct: 710 AIPVEVENRDGDL 748
>gb|CV063939.1|CV063939 BNEL94h5 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL94h5 5' similar to Oryza sativa
beta-expansin, mRNA sequence
Length = 661
Score = 108 bits (230), Expect = 4e-023
Identities = 43/85 (50%), Positives = 61/85 (71%)
Frame = +3 / +2
Query: 39 VEPVHFDLSGTAFGAMAKPGQADQLRNAGRLQVQYIRVACNWNGLDIAFRVDAGSNANYL 218
V HFDLSGTAFGAMAK G+ D+LR+AG + +Q+ RV C + GL + F V+ GSN Y+
Sbjct: 371 VSRYHFDLSGTAFGAMAKYGRNDELRHAGIINMQFKRVPCQYPGLTVTFHVEEGSNPFYM 550
Query: 219 AMAIEYESGDGDLRAXELKQSGAAA 293
A+ +EYE+GDGD++ ++ +S A
Sbjct: 551 AILVEYENGDGDVKQLDIMESRPGA 625
>gb|BU967134.1|BU967134 HB03G05r BC Hordeum vulgare subsp. vulgare cDNA clone HB03G05
5-PRIME, mRNA sequence
Length = 430
Score = 107 bits (229), Expect = 5e-023
Identities = 42/81 (51%), Positives = 60/81 (74%)
Frame = +3 / +1
Query: 39 VEPVHFDLSGTAFGAMAKPGQADQLRNAGRLQVQYIRVACNWNGLDIAFRVDAGSNANYL 218
V HFDLSGTAFGAMAK G+ D+LR+AG + +Q+ RV C + GL + F V+ GSN Y+
Sbjct: 127 VSRYHFDLSGTAFGAMAKYGRNDELRHAGIINMQFKRVPCQYPGLTVTFHVEEGSNPFYM 306
Query: 219 AMAIEYESGDGDLRAXELKQS 281
A+ +EYE+GDGD++ ++ +S
Sbjct: 307 AILVEYENGDGDVKQLDIMES 369
>gb|BU981055.1|BU981055 HA22I03r HA Hordeum vulgare subsp. vulgare cDNA clone HA22I03
5-PRIME, mRNA sequence
Length = 597
Score = 107 bits (229), Expect = 5e-023
Identities = 42/81 (51%), Positives = 60/81 (74%)
Frame = +3 / +1
Query: 39 VEPVHFDLSGTAFGAMAKPGQADQLRNAGRLQVQYIRVACNWNGLDIAFRVDAGSNANYL 218
V HFDLSGTAFGAMAK G+ D+LR+AG + +Q+ RV C + GL + F V+ GSN Y+
Sbjct: 325 VSRYHFDLSGTAFGAMAKYGRNDELRHAGIINMQFKRVPCQYPGLTVTFHVEEGSNPFYM 504
Query: 219 AMAIEYESGDGDLRAXELKQS 281
A+ +EYE+GDGD++ ++ +S
Sbjct: 505 AILVEYENGDGDVKQLDIMES 567
>gb|CB880652.1|CB880652 HM07E17w HM Hordeum vulgare subsp. vulgare cDNA clone HM07E17
3-PRIME, mRNA sequence
Length = 562
Score = 69.8 bits (146), Expect(2) = 5e-023
Identities = 23/52 (44%), Positives = 35/52 (67%)
Frame = +3 / -2
Query: 189 VDAGSNANYLAMAIEYESGDGDLRAXELKQSGAAAWAPMQRSWGAVWQYKSG 344
V+ GSN Y A+ +EYE GDGD+ +L ++ + W PM+ SWG++W+ SG
Sbjct: 558 VEQGSNPVYFAVLVEYEDGDGDVVQVDLMEANSGTWTPMRESWGSIWRLDSG 403
Score = 57.4 bits (119), Expect(2) = 5e-023
Identities = 22/39 (56%), Positives = 28/39 (71%)
Frame = +3 / -2
Query: 354 LQAPLSVRLTSGSGRVLVASNVIPAGWQPGRTYRSVVNF 470
LQAP S+R+T+ SG+ LVA VIPA W P YRS+V +
Sbjct: 396 LQAPFSMRITNESGKTLVADKVIPANWAPSTFYRSIVQY 280
>gb|CB881234.1|CB881234 HM09C23w HM Hordeum vulgare subsp. vulgare cDNA clone HM09C23
3-PRIME, mRNA sequence
Length = 563
Score = 69.8 bits (146), Expect(2) = 5e-023
Identities = 23/52 (44%), Positives = 35/52 (67%)
Frame = +3 / -2
Query: 189 VDAGSNANYLAMAIEYESGDGDLRAXELKQSGAAAWAPMQRSWGAVWQYKSG 344
V+ GSN Y A+ +EYE GDGD+ +L ++ + W PM+ SWG++W+ SG
Sbjct: 559 VEQGSNPVYFAVLVEYEDGDGDVVQVDLMEANSGTWTPMRESWGSIWRLDSG 404
Score = 57.4 bits (119), Expect(2) = 5e-023
Identities = 22/39 (56%), Positives = 28/39 (71%)
Frame = +3 / -2
Query: 354 LQAPLSVRLTSGSGRVLVASNVIPAGWQPGRTYRSVVNF 470
LQAP S+R+T+ SG+ LVA VIPA W P YRS+V +
Sbjct: 397 LQAPFSMRITNESGKTLVADKVIPANWAPSTFYRSIVQY 281
>gb|CA017263.1|CA017263 HV14A15u HV Hordeum vulgare subsp. vulgare cDNA clone HV14A15
3-PRIME, mRNA sequence
Length = 569
Score = 70.3 bits (147), Expect(2) = 7e-023
Identities = 26/54 (48%), Positives = 39/54 (72%)
Frame = +3 / -2
Query: 123 GRLQVQYIRVACNWNGLDIAFRVDAGSNANYLAMAIEYESGDGDLRAXELKQSG 284
G + +Q+ RVAC + GL + F V+ GSNA Y+A+ +EYE+GDGD+ +L +SG
Sbjct: 568 GIIDIQFTRVACEFPGLKVGFHVEEGSNAVYMAILVEYENGDGDVVQVDLMESG 407
Score = 56.5 bits (117), Expect(2) = 7e-023
Identities = 21/39 (53%), Positives = 28/39 (71%)
Frame = +3 / -2
Query: 354 LQAPLSVRLTSGSGRVLVASNVIPAGWQPGRTYRSVVNF 470
LQAP S+R+ + SG+ LVA NVIP W+P YRS+V +
Sbjct: 325 LQAPFSIRIRNESGKTLVARNVIPKNWRPNTFYRSIVQY 209
>gb|BQ458429.1|BQ458429 HA05E07r HA Hordeum vulgare subsp. vulgare cDNA clone HA05E07
5-PRIME, mRNA sequence
Length = 504
Score = 105 bits (225), Expect = 2e-022
Identities = 41/80 (51%), Positives = 59/80 (73%)
Frame = +3 / +2
Query: 39 VEPVHFDLSGTAFGAMAKPGQADQLRNAGRLQVQYIRVACNWNGLDIAFRVDAGSNANYL 218
V HFDLSGTAFGAMAK G+ D+LR+AG + +Q+ RV C + GL + F V+ GSN Y+
Sbjct: 263 VSRYHFDLSGTAFGAMAKYGRNDELRHAGIINMQFKRVPCQYPGLTVTFHVEEGSNPFYM 442
Query: 219 AMAIEYESGDGDLRAXELKQ 278
A+ +EYE+GDGD++ ++ +
Sbjct: 443 AILVEYENGDGDVKQLDIME 502
>gb|CK124171.1|CK124171 BES1824107e17 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010E177 5-PRIME, mRNA sequence
Length = 751
Score = 56.1 bits (116), Expect(3) = 2e-022
Identities = 23/51 (45%), Positives = 34/51 (66%)
Frame = +3 / +1
Query: 354 LQAPLSVRLTSGSGRVLVASNVIPAGWQPGRTYRSVVNFGGNHA*RVILRM 506
LQAP S+R+ + SG+ LVA+ VIPA W+P YRS V + + RV++ +
Sbjct: 232 LQAPFSIRIRNESGKTLVANKVIPANWRPNTFYRSFVQYS*SPFTRVLVML 384
Score = 55.1 bits (114), Expect(3) = 2e-022
Identities = 21/51 (41%), Positives = 32/51 (62%)
Frame = +3 / +1
Query: 129 LQVQYIRVACNWNGLDIAFRVDAGSNANYLAMAIEYESGDGDLRAXELKQS 281
+ +++ RV C + GL I F V+ SN Y A+ +EYE GDGD+ +L +S
Sbjct: 1 IDIEFTRVPCEFPGLKIGFHVEEYSNPVYFAVLVEYEDGDGDVVQVDLMES 153
Score = 31.3 bits (62), Expect(3) = 2e-022
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3 / +1
Query: 267 ELKQSGAAAWAPMQRSWGAVWQYKS 341
E + G W M+ SWG+VW+ S
Sbjct: 148 ESRGPGGGKWTRMRESWGSVWRLDS 222
>gb|BM442635.2|BM442635 EBan01_SQ003_L19_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ003_L19 5', mRNA sequence
Length = 411
Score = 68.0 bits (142), Expect(2) = 3e-022
Identities = 24/55 (43%), Positives = 36/55 (65%)
Frame = +3 / +3
Query: 168 GLDIAFRVDAGSNANYLAMAIEYESGDGDLRAXELKQSGAAAWAPMQRSWGAVWQ 332
G + F V+ GS+ NYLA+ I++ GDGD+ A ++K G W ++ SWGAVW+
Sbjct: 225 GTKVNFHVEKGSSPNYLALVIKFLQGDGDVVAVDIKPKGKDKWIELKESWGAVWR 389
Score = 57.0 bits (118), Expect(2) = 3e-022
Identities = 21/38 (55%), Positives = 29/38 (76%)
Frame = +3 / +3
Query: 51 HFDLSGTAFGAMAKPGQADQLRNAGRLQVQYIRVACNW 164
HFDLSG AFG MAK GQ +LR+AG +++++ RV C +
Sbjct: 105 HFDLSGHAFGTMAKKGQEQKLRDAGEVEIKFRRVKCKY 218
>gb|BQ467895.1|BQ467895 HR01E04r HR Hordeum vulgare subsp. vulgare cDNA clone HR01E04
5-PRIME, mRNA sequence
Length = 540
Score = 63.4 bits (132), Expect(2) = 5e-022
Identities = 22/48 (45%), Positives = 34/48 (70%)
Frame = +3 / +2
Query: 198 GSNANYLAMAIEYESGDGDLRAXELKQSGAAAWAPMQRSWGAVWQYKS 341
GSNA YLA+ IEYE DGD+ ++K++ + +W M+ SWG++W+ S
Sbjct: 14 GSNAVYLAVLIEYEDMDGDVIQVDMKEANSGSWMAMRESWGSIWRMDS 157
Score = 60.6 bits (126), Expect(2) = 5e-022
Identities = 24/39 (61%), Positives = 29/39 (74%)
Frame = +3 / +2
Query: 354 LQAPLSVRLTSGSGRVLVASNVIPAGWQPGRTYRSVVNF 470
LQ P S+R+TS SG+ LVA+NVIPA W+P YRS V F
Sbjct: 167 LQGPFSMRITSDSGKKLVANNVIPANWRPNTDYRSFVQF 283
>gb|BI958784.1|BI958784 HVSMEn0016J13f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0016J13f, mRNA sequence
Length = 656
Score = 103 bits (219), Expect = 1e-021
Identities = 40/72 (55%), Positives = 53/72 (73%)
Frame = +3 / +3
Query: 39 VEPVHFDLSGTAFGAMAKPGQADQLRNAGRLQVQYIRVACNWNGLDIAFRVDAGSNANYL 218
V HFDLSGTAFGAMAKPG +++LR++G + +Q+ RV C + GL + F V+ GSN Y
Sbjct: 426 VAKYHFDLSGTAFGAMAKPGLSEKLRHSGIIDIQFKRVPCEFPGLKVTFHVEQGSNPVYF 605
Query: 219 AMAIEYESGDGD 254
A+ +EYE GDGD
Sbjct: 606 AVLVEYEDGDGD 641
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 331,077,003
Number of Sequences: 312970
Number of extensions: 5393813
Number of successful extensions: 115908
Number of sequences better than 1.0e-020: 71
length of database: 58,378,179
effective HSP length: 51
effective length of database: 42,416,709
effective search space used: 7635007620
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)