TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3829406.2.1
(673 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI778783.2|BI778783 EBro01_SQ001_H14_R root, 3 week, hyd... 189 1e-047
gb|BI777432.2|BI777432 EBro04_SQ001_D11_R root, 3 week, sal... 189 1e-047
gb|BQ766335.1|BQ766335 EBro08_SQ005_N13_R root, 3 week, dro... 188 4e-047
gb|BQ766908.1|BQ766908 EBro08_SQ007_O12_R root, 3 week, dro... 188 4e-047
gb|BQ766568.1|BQ766568 EBro08_SQ006_P09 _R root, 3 week, dr... 187 5e-047
gb|BF263225.2|BF263225 HV_CEa0006C22f Hordeum vulgare seedl... 185 2e-046
gb|BM372222.2|BM372222 EBro03_SQ004_F20_R root, 3 week, wat... 185 2e-046
gb|BJ465566.1|BJ465566 BJ465566 K. Sato unpublished cDNA li... 179 1e-044
gb|BF258553.2|BF258553 HVSMEf0016A19f Hordeum vulgare seedl... 175 2e-043
gb|BJ462736.1|BJ462736 BJ462736 K. Sato unpublished cDNA li... 165 2e-040
gb|BQ761559.1|BQ761559 EBem10_SQ001_H05_R embryo, 2 Day ger... 155 3e-037
gb|BU996454.1|BU996454 HM13K17r HM Hordeum vulgare subsp. v... 114 1e-035
gb|BM817085.1|BM817085 HC01F06_T3.ab1 HC Hordeum vulgare su... 112 5e-035
gb|BF626638.3|BF626638 HVSMEa0018P12f Hordeum vulgare seedl... 112 5e-035
gb|BF260973.3|BF260973 HVSMEf0023G21f Hordeum vulgare seedl... 112 5e-035
gb|BQ763768.1|BQ763768 EBro03_SQ005_J07_R root, 3 week, wat... 112 5e-035
gb|BF257180.2|BF257180 HVSMEf0012B18f Hordeum vulgare seedl... 112 5e-035
gb|BF257301.3|BF257301 HVSMEf0012H16f Hordeum vulgare seedl... 112 5e-035
gb|BF259798.2|BF259798 HVSMEf0020E17f Hordeum vulgare seedl... 112 5e-035
gb|BQ768251.1|BQ768251 EBro08_SQ011_M05_R root, 3 week, dro... 112 5e-035
gb|BF627929.2|BF627929 HVSMEb0006K19f Hordeum vulgare seedl... 112 7e-035
gb|BM372224.2|BM372224 EBro03_SQ004_F22_R root, 3 week, wat... 111 7e-035
gb|BE060209.2|BE060209 HVSMEg0011J02f Hordeum vulgare pre-a... 110 2e-034
gb|BF265744.2|BF265744 HV_CEa0013D13f Hordeum vulgare seedl... 108 6e-034
gb|BF628119.3|BF628119 HVSMEb0003C23f Hordeum vulgare seedl... 108 9e-034
gb|BQ468701.1|BQ468701 HM02A22r HM Hordeum vulgare subsp. v... 143 9e-034
gb|BF255794.1|BF255794 HVSMEf0007N07f Hordeum vulgare seedl... 104 1e-032
gb|BM444307.1|BM444307 EBem09_SQ004_M10_R embryo, 1 Day ger... 102 4e-032
gb|BM443669.2|BM443669 EBem09_SQ001_B17_R embryo, 1 Day ger... 136 1e-031
gb|BI777138.2|BI777138 EBro03_SQ002_B22_R root, 3 week, wat... 111 6e-031
gb|BM369950.2|BM369950 EBro08_SQ002_H05_R root, 3 week, dro... 112 2e-030
gb|BI778861.2|BI778861 EBro01_SQ001_M16_R root, 3 week, hyd... 100 9e-030
gb|BI960428.1|BI960428 HVSMEn0024J02f Hordeum vulgare rachi... 95 3e-029
gb|BF065110.2|BF065110 HV_CEb0023A22f Hordeum vulgare seedl... 97 4e-029
gb|BI958660.1|BI958660 HVSMEn0016B18f Hordeum vulgare rachi... 99 5e-028
gb|BI960467.1|BI960467 HVSMEn0024L06f Hordeum vulgare rachi... 90 8e-026
gb|BQ661125.1|BQ661125 HM02A22u HM Hordeum vulgare subsp. v... 115 3e-025
gb|BF260771.3|BF260771 HVSMEf0022O11f Hordeum vulgare seedl... 79 4e-025
gb|BQ767572.1|BQ767572 EBro08_SQ009_D08_R root, 3 week, dro... 112 2e-024
>gb|BI778783.2|BI778783 EBro01_SQ001_H14_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ001_H14 5', mRNA sequence
Length = 530
Score = 189 bits (408), Expect = 1e-047
Identities = 80/94 (85%), Positives = 84/94 (89%)
Frame = +2 / -3
Query: 299 HGRV*SPHL*PTGRSTRLQRLGMVMATSGLIPDFLAVLDSMTAQRHWGLCFPMVCTAVQQ 478
HGRV*+PHL*PTGRSTRLQRLGM MATSGL+P LAV +SMTAQRH GLCFPMVCTAVQ
Sbjct: 432 HGRV*APHL*PTGRSTRLQRLGMDMATSGLMPALLAVSESMTAQRHLGLCFPMVCTAVQH 253
Query: 479 PLDGAELGFCAADAHGASFSAILSGGVAPHSPAP 580
PLDGA+LG C ADAHGASFSAILS GV PHSPAP
Sbjct: 252 PLDGADLGSCPADAHGASFSAILSAGVFPHSPAP 151
Score = 169 bits (363), Expect = 2e-041
Identities = 69/95 (72%), Positives = 76/95 (80%)
Frame = -2 / +2
Query: 582 RGAGECGATPPDRMALKLXXXXXXXXXXXXXXSNGCCTAVHTIGKQSPQCLCAVMLSKTA 403
+GAGECG TP D+MALKL S+GCCTAVHTIGKQSP+CLCAVMLS TA
Sbjct: 149 QGAGECGKTPADKMALKLAPCASAGQDPKSAPSSGCCTAVHTIGKQSPKCLCAVMLSDTA 328
Query: 402 KKSGIKPEVAITIPKRCNLVDRPVGYKCGDYTLP* 298
K +GIKPEVA++IPKRCNLVDRPVGYKCG YTLP*
Sbjct: 329 KSAGIKPEVAMSIPKRCNLVDRPVGYKCGAYTLP* 433
Score = 57.9 bits (120), Expect(3) = 3e-023
Identities = 22/37 (59%), Positives = 23/37 (62%)
Frame = +3 / -1
Query: 294 QLMAECNLRTCSXXXXXXXCSAWGW*WPPRA*SRTSW 404
+L AEC LRTCS CSAWGW W P A* R SW
Sbjct: 437 RLTAECRLRTCSRQGGRRGCSAWGWTWRPPA*CRRSW 327
Score = 44.6 bits (91), Expect(3) = 3e-023
Identities = 13/15 (86%), Positives = 15/15 (100%)
Frame = +3 / -1
Query: 459 CAPPCSSRWTAPSWG 503
CAPPCS+RWTAP+WG
Sbjct: 272 CAPPCSTRWTAPTWG 228
Score = 43.2 bits (88), Expect(3) = 3e-023
Identities = 16/17 (94%), Positives = 17/17 (100%)
Frame = +1 / -2
Query: 415 QHDGAEALGALLPDGVH 465
+HDGAEALGALLPDGVH
Sbjct: 316 EHDGAEALGALLPDGVH 266
>gb|BI777432.2|BI777432 EBro04_SQ001_D11_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ001_D11 5', mRNA sequence
Length = 481
Score = 189 bits (408), Expect = 1e-047
Identities = 80/94 (85%), Positives = 84/94 (89%)
Frame = +2 / -1
Query: 299 HGRV*SPHL*PTGRSTRLQRLGMVMATSGLIPDFLAVLDSMTAQRHWGLCFPMVCTAVQQ 478
HGRV*+PHL*PTGRSTRLQRLGM MATSGL+P LAV +SMTAQRH GLCFPMVCTAVQ
Sbjct: 379 HGRV*APHL*PTGRSTRLQRLGMDMATSGLMPALLAVSESMTAQRHLGLCFPMVCTAVQH 200
Query: 479 PLDGAELGFCAADAHGASFSAILSGGVAPHSPAP 580
PLDGA+LG C ADAHGASFSAILS GV PHSPAP
Sbjct: 199 PLDGADLGSCPADAHGASFSAILSAGVFPHSPAP 98
Score = 169 bits (363), Expect = 2e-041
Identities = 69/95 (72%), Positives = 76/95 (80%)
Frame = -2 / +3
Query: 582 RGAGECGATPPDRMALKLXXXXXXXXXXXXXXSNGCCTAVHTIGKQSPQCLCAVMLSKTA 403
+GAGECG TP D+MALKL S+GCCTAVHTIGKQSP+CLCAVMLS TA
Sbjct: 96 QGAGECGKTPADKMALKLAPCASAGQDPKSAPSSGCCTAVHTIGKQSPKCLCAVMLSDTA 275
Query: 402 KKSGIKPEVAITIPKRCNLVDRPVGYKCGDYTLP* 298
K +GIKPEVA++IPKRCNLVDRPVGYKCG YTLP*
Sbjct: 276 KSAGIKPEVAMSIPKRCNLVDRPVGYKCGAYTLP* 380
Score = 57.9 bits (120), Expect(3) = 3e-023
Identities = 22/37 (59%), Positives = 23/37 (62%)
Frame = +3 / -2
Query: 294 QLMAECNLRTCSXXXXXXXCSAWGW*WPPRA*SRTSW 404
+L AEC LRTCS CSAWGW W P A* R SW
Sbjct: 384 RLTAECRLRTCSRQGGRRGCSAWGWTWRPPA*CRRSW 274
Score = 44.6 bits (91), Expect(3) = 3e-023
Identities = 13/15 (86%), Positives = 15/15 (100%)
Frame = +3 / -2
Query: 459 CAPPCSSRWTAPSWG 503
CAPPCS+RWTAP+WG
Sbjct: 219 CAPPCSTRWTAPTWG 175
Score = 43.2 bits (88), Expect(3) = 3e-023
Identities = 16/17 (94%), Positives = 17/17 (100%)
Frame = +1 / -3
Query: 415 QHDGAEALGALLPDGVH 465
+HDGAEALGALLPDGVH
Sbjct: 263 EHDGAEALGALLPDGVH 213
>gb|BQ766335.1|BQ766335 EBro08_SQ005_N13_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ005_N13 5', mRNA sequence
Length = 526
Score = 188 bits (404), Expect = 4e-047
Identities = 80/101 (79%), Positives = 86/101 (85%)
Frame = +2 / -3
Query: 278 SSSSRAAHGRV*SPHL*PTGRSTRLQRLGMVMATSGLIPDFLAVLDSMTAQRHWGLCFPM 457
+SS AHGRV +PHL*PTGRSTR QRLGM MATSGL+P LAV +SMTAQRH GLCFPM
Sbjct: 443 ASSGLKAHGRVYAPHL*PTGRSTRSQRLGMDMATSGLMPALLAVSESMTAQRHLGLCFPM 264
Query: 458 VCTAVQQPLDGAELGFCAADAHGASFSAILSGGVAPHSPAP 580
VCTAVQ PLDGA+LG C ADAHGA+FSAILS GV PHSPAP
Sbjct: 263 VCTAVQHPLDGADLGSCPADAHGANFSAILSAGVFPHSPAP 141
Score = 171 bits (368), Expect = 3e-042
Identities = 71/99 (71%), Positives = 78/99 (78%)
Frame = -2 / +1
Query: 579 GAGECGATPPDRMALKLXXXXXXXXXXXXXXSNGCCTAVHTIGKQSPQCLCAVMLSKTAK 400
GAGECG TP D+MALKL S+GCCTAVHTIGKQSP+CLCAVMLS TAK
Sbjct: 142 GAGECGKTPADKMALKLAPCASAGQDPKSAPSSGCCTAVHTIGKQSPKCLCAVMLSDTAK 321
Query: 399 KSGIKPEVAITIPKRCNLVDRPVGYKCGDYTLP*AAREL 283
+GIKPEVA++IPKRC+LVDRPVGYKCG YTLP*A R L
Sbjct: 322 SAGIKPEVAMSIPKRCDLVDRPVGYKCGAYTLP*ALRPL 438
>gb|BQ766908.1|BQ766908 EBro08_SQ007_O12_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ007_O12 5', mRNA sequence
Length = 573
Score = 188 bits (404), Expect = 4e-047
Identities = 80/101 (79%), Positives = 86/101 (85%)
Frame = +2 / -3
Query: 278 SSSSRAAHGRV*SPHL*PTGRSTRLQRLGMVMATSGLIPDFLAVLDSMTAQRHWGLCFPM 457
+SS AHGRV +PHL*PTGRSTR QRLGM MATSGL+P LAV +SMTAQRH GLCFPM
Sbjct: 430 ASSGLKAHGRVYAPHL*PTGRSTRSQRLGMDMATSGLMPALLAVSESMTAQRHLGLCFPM 251
Query: 458 VCTAVQQPLDGAELGFCAADAHGASFSAILSGGVAPHSPAP 580
VCTAVQ PLDGA+LG C ADAHGA+FSAILS GV PHSPAP
Sbjct: 250 VCTAVQHPLDGADLGSCPADAHGANFSAILSAGVFPHSPAP 128
Score = 171 bits (368), Expect = 3e-042
Identities = 71/99 (71%), Positives = 78/99 (78%)
Frame = -2 / +3
Query: 579 GAGECGATPPDRMALKLXXXXXXXXXXXXXXSNGCCTAVHTIGKQSPQCLCAVMLSKTAK 400
GAGECG TP D+MALKL S+GCCTAVHTIGKQSP+CLCAVMLS TAK
Sbjct: 129 GAGECGKTPADKMALKLAPCASAGQDPKSAPSSGCCTAVHTIGKQSPKCLCAVMLSDTAK 308
Query: 399 KSGIKPEVAITIPKRCNLVDRPVGYKCGDYTLP*AAREL 283
+GIKPEVA++IPKRC+LVDRPVGYKCG YTLP*A R L
Sbjct: 309 SAGIKPEVAMSIPKRCDLVDRPVGYKCGAYTLP*ALRPL 425
>gb|BQ766568.1|BQ766568 EBro08_SQ006_P09 _R root, 3 week, drought-stressed, cv Optic,
EBro08 Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ006_P09 5', mRNA sequence
Length = 424
Score = 187 bits (403), Expect = 5e-047
Identities = 79/94 (84%), Positives = 83/94 (88%)
Frame = +2 / -1
Query: 299 HGRV*SPHL*PTGRSTRLQRLGMVMATSGLIPDFLAVLDSMTAQRHWGLCFPMVCTAVQQ 478
HGRV*+PHL*PTGRSTRLQRLGM MATSGL+P LAV +SMTAQRH GLCFPMVCTAVQ
Sbjct: 376 HGRV*APHL*PTGRSTRLQRLGMDMATSGLMPALLAVSESMTAQRHLGLCFPMVCTAVQH 197
Query: 479 PLDGAELGFCAADAHGASFSAILSGGVAPHSPAP 580
PLDGA+LG C ADAHGA FSAILS GV PHSPAP
Sbjct: 196 PLDGADLGSCPADAHGARFSAILSAGVFPHSPAP 95
Score = 166 bits (358), Expect = 8e-041
Identities = 68/95 (71%), Positives = 75/95 (78%)
Frame = -2 / +3
Query: 582 RGAGECGATPPDRMALKLXXXXXXXXXXXXXXSNGCCTAVHTIGKQSPQCLCAVMLSKTA 403
+GAGECG TP D+MAL L S+GCCTAVHTIGKQSP+CLCAVMLS TA
Sbjct: 93 QGAGECGKTPADKMALNLAPCASAGQDPKSAPSSGCCTAVHTIGKQSPKCLCAVMLSDTA 272
Query: 402 KKSGIKPEVAITIPKRCNLVDRPVGYKCGDYTLP* 298
K +GIKPEVA++IPKRCNLVDRPVGYKCG YTLP*
Sbjct: 273 KSAGIKPEVAMSIPKRCNLVDRPVGYKCGAYTLP* 377
Score = 57.9 bits (120), Expect(3) = 3e-023
Identities = 22/37 (59%), Positives = 23/37 (62%)
Frame = +3 / -2
Query: 294 QLMAECNLRTCSXXXXXXXCSAWGW*WPPRA*SRTSW 404
+L AEC LRTCS CSAWGW W P A* R SW
Sbjct: 381 RLTAECRLRTCSRQGGRRGCSAWGWTWRPPA*CRRSW 271
Score = 44.6 bits (91), Expect(3) = 3e-023
Identities = 13/15 (86%), Positives = 15/15 (100%)
Frame = +3 / -2
Query: 459 CAPPCSSRWTAPSWG 503
CAPPCS+RWTAP+WG
Sbjct: 216 CAPPCSTRWTAPTWG 172
Score = 43.2 bits (88), Expect(3) = 3e-023
Identities = 16/17 (94%), Positives = 17/17 (100%)
Frame = +1 / -3
Query: 415 QHDGAEALGALLPDGVH 465
+HDGAEALGALLPDGVH
Sbjct: 260 EHDGAEALGALLPDGVH 210
>gb|BF263225.2|BF263225 HV_CEa0006C22f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0006C22f, mRNA sequence
Length = 593
Score = 185 bits (398), Expect = 2e-046
Identities = 78/95 (82%), Positives = 83/95 (87%)
Frame = +2 / -3
Query: 296 AHGRV*SPHL*PTGRSTRLQRLGMVMATSGLIPDFLAVLDSMTAQRHWGLCFPMVCTAVQ 475
AHGRV +PHL*PTGRSTR QRLGM MATSGL+P LAV +SMTAQRH GLCFPMVCTAVQ
Sbjct: 414 AHGRVYAPHL*PTGRSTRSQRLGMDMATSGLMPALLAVSESMTAQRHLGLCFPMVCTAVQ 235
Query: 476 QPLDGAELGFCAADAHGASFSAILSGGVAPHSPAP 580
PLDGA+LG C ADAHGA+FSAILS GV PHSPAP
Sbjct: 234 HPLDGADLGSCPADAHGANFSAILSAGVFPHSPAP 130
Score = 170 bits (365), Expect = 9e-042
Identities = 70/100 (70%), Positives = 78/100 (78%)
Frame = -2 / +2
Query: 579 GAGECGATPPDRMALKLXXXXXXXXXXXXXXSNGCCTAVHTIGKQSPQCLCAVMLSKTAK 400
GAGECG TP D+MALKL S+GCCTAVHTIGKQSP+CLCAVMLS TAK
Sbjct: 131 GAGECGKTPADKMALKLAPCASAGQDPKSAPSSGCCTAVHTIGKQSPKCLCAVMLSDTAK 310
Query: 399 KSGIKPEVAITIPKRCNLVDRPVGYKCGDYTLP*AARELL 280
+GIKPEVA++IPKRC+LVDRPVGYKCG YTLP*A L+
Sbjct: 311 SAGIKPEVAMSIPKRCDLVDRPVGYKCGAYTLP*ALSHLM 430
>gb|BM372222.2|BM372222 EBro03_SQ004_F20_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ004_F20 5', mRNA sequence
Length = 430
Score = 185 bits (398), Expect = 2e-046
Identities = 78/95 (82%), Positives = 83/95 (87%)
Frame = +2 / -1
Query: 296 AHGRV*SPHL*PTGRSTRLQRLGMVMATSGLIPDFLAVLDSMTAQRHWGLCFPMVCTAVQ 475
AHGRV +PHL*PTGRSTR QRLGM MATSGL+P LAV +SMTAQRH GLCFPMVCTAVQ
Sbjct: 430 AHGRVYAPHL*PTGRSTRSQRLGMDMATSGLMPALLAVSESMTAQRHLGLCFPMVCTAVQ 251
Query: 476 QPLDGAELGFCAADAHGASFSAILSGGVAPHSPAP 580
PLDGA+LG C ADAHGA+FSAILS GV PHSPAP
Sbjct: 250 HPLDGADLGSCPADAHGANFSAILSAGVFPHSPAP 146
Score = 166 bits (357), Expect = 1e-040
Identities = 68/94 (72%), Positives = 75/94 (79%)
Frame = -2 / +3
Query: 579 GAGECGATPPDRMALKLXXXXXXXXXXXXXXSNGCCTAVHTIGKQSPQCLCAVMLSKTAK 400
GAGECG TP D+MALKL S+GCCTAVHTIGKQSP+CLCAVMLS TAK
Sbjct: 147 GAGECGKTPADKMALKLAPCASAGQDPKSAPSSGCCTAVHTIGKQSPKCLCAVMLSDTAK 326
Query: 399 KSGIKPEVAITIPKRCNLVDRPVGYKCGDYTLP* 298
+GIKPEVA++IPKRC+LVDRPVGYKCG YTLP*
Sbjct: 327 SAGIKPEVAMSIPKRCDLVDRPVGYKCGAYTLP* 428
>gb|BJ465566.1|BJ465566 BJ465566 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags24d01 3', mRNA sequence
Length = 472
Score = 179 bits (386), Expect = 1e-044
Identities = 77/98 (78%), Positives = 83/98 (84%)
Frame = +2 / +1
Query: 278 SSSSRAAHGRV*SPHL*PTGRSTRLQRLGMVMATSGLIPDFLAVLDSMTAQRHWGLCFPM 457
+SS AHGRV +PHL*PTGRSTR QRLGM MATSGL+P LAV +SMTAQRH GLCFPM
Sbjct: 178 ASSGLKAHGRVYAPHL*PTGRSTRSQRLGMDMATSGLMPALLAVSESMTAQRHLGLCFPM 357
Query: 458 VCTAVQQPLDGAELGFCAADAHGASFSAILSGGVAPHS 571
VCTAVQ PLDGA+LG C ADAHGA+FSAILS GV PHS
Sbjct: 358 VCTAVQHPLDGADLGSCPADAHGANFSAILSAGVFPHS 471
Score = 164 bits (352), Expect = 5e-040
Identities = 68/96 (70%), Positives = 75/96 (78%)
Frame = -2 / -3
Query: 570 ECGATPPDRMALKLXXXXXXXXXXXXXXSNGCCTAVHTIGKQSPQCLCAVMLSKTAKKSG 391
ECG TP D+MALKL S+GCCTAVHTIGKQSP+CLCAVMLS TAK +G
Sbjct: 470 ECGKTPADKMALKLAPCASAGQDPKSAPSSGCCTAVHTIGKQSPKCLCAVMLSDTAKSAG 291
Query: 390 IKPEVAITIPKRCNLVDRPVGYKCGDYTLP*AAREL 283
IKPEVA++IPKRC+LVDRPVGYKCG YTLP*A R L
Sbjct: 290 IKPEVAMSIPKRCDLVDRPVGYKCGAYTLP*ALRPL 183
>gb|BF258553.2|BF258553 HVSMEf0016A19f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0016A19f, mRNA sequence
Length = 593
Score = 175 bits (377), Expect = 2e-043
Identities = 74/95 (77%), Positives = 79/95 (83%)
Frame = +2 / -1
Query: 296 AHGRV*SPHL*PTGRSTRLQRLGMVMATSGLIPDFLAVLDSMTAQRHWGLCFPMVCTAVQ 475
AHGRV +PHL PTGRS R QRLG MATSGL+P LAV +SMTAQRH G CFPMVCTAVQ
Sbjct: 422 AHGRVYAPHLKPTGRSRRSQRLGRDMATSGLMPALLAVSESMTAQRHLGFCFPMVCTAVQ 243
Query: 476 QPLDGAELGFCAADAHGASFSAILSGGVAPHSPAP 580
PLDGA+LG C ADAHGA+FSAILS GV PHSPAP
Sbjct: 242 HPLDGADLGSCPADAHGANFSAILSAGVFPHSPAP 138
Score = 162 bits (349), Expect = 1e-039
Identities = 66/99 (66%), Positives = 77/99 (77%)
Frame = -2 / +1
Query: 579 GAGECGATPPDRMALKLXXXXXXXXXXXXXXSNGCCTAVHTIGKQSPQCLCAVMLSKTAK 400
GAGECG TP D+MALKL S+GCCTAVHTIGKQ+P+CLCAVMLS TAK
Sbjct: 139 GAGECGKTPADKMALKLAPCASAGQDPKSAPSSGCCTAVHTIGKQNPKCLCAVMLSDTAK 318
Query: 399 KSGIKPEVAITIPKRCNLVDRPVGYKCGDYTLP*AAREL 283
+GIKPEVA+++PKRC+L DRPVG+KCG YTLP*A + L
Sbjct: 319 SAGIKPEVAMSLPKRCDLRDRPVGFKCGAYTLP*ALKPL 435
>gb|BJ462736.1|BJ462736 BJ462736 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags24d01 5', mRNA sequence
Length = 493
Score = 165 bits (355), Expect = 2e-040
Identities = 72/96 (75%), Positives = 78/96 (81%)
Frame = +2 / -3
Query: 278 SSSSRAAHGRV*SPHL*PTGRSTRLQRLGMVMATSGLIPDFLAVLDSMTAQRHWGLCFPM 457
+SS AHGRV +PHL*PTGRSTR QRLGM MATSGL+P LAV +SMTAQRH GLCFPM
Sbjct: 296 ASSGLKAHGRVYAPHL*PTGRSTRSQRLGMDMATSGLMPALLAVSESMTAQRHLGLCFPM 117
Query: 458 VCTAVQQPLDGAELGFCAADAHGASFSAILSGGVAP 565
VCTAVQ PLDGA+LG C ADAHGA+FSA L G P
Sbjct: 116 VCTAVQHPLDGADLGSCPADAHGANFSAXLVRGRLP 9
Score = 149 bits (321), Expect = 1e-035
Identities = 64/94 (68%), Positives = 70/94 (74%)
Frame = -2 / +1
Query: 564 GATPPDRMALKLXXXXXXXXXXXXXXSNGCCTAVHTIGKQSPQCLCAVMLSKTAKKSGIK 385
G P MALKL S+GCCTAVHTIGKQSP+CLCAVMLS TAK +GIK
Sbjct: 10 GRRPRTXMALKLAPCASAGQDPKSAPSSGCCTAVHTIGKQSPKCLCAVMLSDTAKSAGIK 189
Query: 384 PEVAITIPKRCNLVDRPVGYKCGDYTLP*AAREL 283
PEVA++IPKRC+LVDRPVGYKCG YTLP*A R L
Sbjct: 190 PEVAMSIPKRCDLVDRPVGYKCGAYTLP*ALRPL 291
>gb|BQ761559.1|BQ761559 EBem10_SQ001_H05_R embryo, 2 Day germination, no treatment, cv
Optic, EBem10 Hordeum vulgare subsp. vulgare cDNA clone
EBem10_SQ001_H05 5', mRNA sequence
Length = 329
Score = 155 bits (332), Expect = 3e-037
Identities = 66/84 (78%), Positives = 71/84 (84%)
Frame = +2 / -3
Query: 278 SSSSRAAHGRV*SPHL*PTGRSTRLQRLGMVMATSGLIPDFLAVLDSMTAQRHWGLCFPM 457
+SS AHGRV +PHL*PTGRSTR QRLGM MATSGL+P LAV +SMTAQRH GLCFPM
Sbjct: 252 ASSGLKAHGRVYAPHL*PTGRSTRSQRLGMDMATSGLMPALLAVSESMTAQRHLGLCFPM 73
Query: 458 VCTAVQQPLDGAELGFCAADAHGA 529
VCTAVQ PLDGA+LG C ADAHGA
Sbjct: 72 VCTAVQHPLDGADLGSCPADAHGA 1
Score = 142 bits (304), Expect = 2e-033
Identities = 56/67 (83%), Positives = 62/67 (92%)
Frame = -2 / +2
Query: 483 NGCCTAVHTIGKQSPQCLCAVMLSKTAKKSGIKPEVAITIPKRCNLVDRPVGYKCGDYTL 304
+GCCTAVHTIGKQSP+CLCAVMLS TAK +GIKPEVA++IPKRC+LVDRPVGYKCG YTL
Sbjct: 47 SGCCTAVHTIGKQSPKCLCAVMLSDTAKSAGIKPEVAMSIPKRCDLVDRPVGYKCGAYTL 226
Query: 303 P*AAREL 283
P*A R L
Sbjct: 227 P*ALRPL 247
Score = 48.3 bits (99), Expect(3) = 1e-020
Identities = 21/43 (48%), Positives = 23/43 (53%)
Frame = +3 / -1
Query: 276 AQAALAQLMAECNLRTCSXXXXXXXCSAWGW*WPPRA*SRTSW 404
A ++L AEC LRTCS SAWGW W A* R SW
Sbjct: 254 AHQVASRLTAECMLRTCSRQGGRRGRSAWGWTWRLPA*CRRSW 126
Score = 44.6 bits (91), Expect(3) = 1e-020
Identities = 13/15 (86%), Positives = 15/15 (100%)
Frame = +3 / -1
Query: 459 CAPPCSSRWTAPSWG 503
CAPPCS+RWTAP+WG
Sbjct: 71 CAPPCSTRWTAPTWG 27
Score = 43.2 bits (88), Expect(3) = 1e-020
Identities = 16/17 (94%), Positives = 17/17 (100%)
Frame = +1 / -2
Query: 415 QHDGAEALGALLPDGVH 465
+HDGAEALGALLPDGVH
Sbjct: 115 EHDGAEALGALLPDGVH 65
>gb|BU996454.1|BU996454 HM13K17r HM Hordeum vulgare subsp. vulgare cDNA clone HM13K17
5-PRIME, mRNA sequence
Length = 534
Score = 114 bits (243), Expect(2) = 1e-035
Identities = 45/53 (84%), Positives = 48/53 (90%)
Frame = -2 / +2
Query: 447 QSPQCLCAVMLSKTAKKSGIKPEVAITIPKRCNLVDRPVGYKCGDYTLP*AAR 289
+SP CLCAVMLS TAK +GIKPEVAITIPKRCN+ DRPVGYKCGDYTLP* AR
Sbjct: 248 KSPSCLCAVMLSGTAKMAGIKPEVAITIPKRCNMADRPVGYKCGDYTLP*VAR 406
Score = 90.4 bits (191), Expect(2) = 2e-031
Identities = 43/60 (71%), Positives = 44/60 (73%)
Frame = +2 / -1
Query: 266 MHMCSSSSRAAHGRV*SPHL*PTGRSTRLQRLGMVMATSGLIPDFLAVLDSMTAQRHWGL 445
+H SRA G V*SPHL*PTGRS LQRLGMVMATSGLIP LAV DSMTA R GL
Sbjct: 429 IHPHRHQSRATQGSV*SPHL*PTGRSAMLQRLGMVMATSGLIPAILAVPDSMTAHRQLGL 250
Score = 65.2 bits (136), Expect(2) = 2e-031
Identities = 32/73 (43%), Positives = 37/73 (50%)
Frame = +2 / -1
Query: 452 PMVCTAVQQPLDGAELGFCAADAHGASFSAILSGGVAPHSPAPXXXXXXXXXXXXXXXSN 631
PMVCTA QQ L+GAE G AA+ HGA AI SG PHSPAP ++
Sbjct: 246 PMVCTAEQQLLEGAESGSSAAEMHGAMRRAIRSGDDLPHSPAPSPSATPASATARARTTS 67
Query: 632 KRPFISVACLHSP 670
IS C+ P
Sbjct: 66 GLIAISPCCVLLP 28
Score = 55.1 bits (114), Expect(2) = 1e-035
Identities = 22/44 (50%), Positives = 27/44 (61%)
Frame = -2 / +2
Query: 579 GAGECGATPPDRMALKLXXXXXXXXXXXXXXSNGCCTAVHTIGK 448
GAGECG + PDRMAL++ S+ CC+AVHTIGK
Sbjct: 119 GAGECGRSSPDRMALRMAPCISAADEPDSAPSSSCCSAVHTIGK 250
>gb|BM817085.1|BM817085 HC01F06_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC01F06_T3.ab1 similar to (AC007661) hypothetical
protein [Arabidopsis thaliana], mRNA sequence
Length = 768
Score = 112 bits (239), Expect(2) = 5e-035
Identities = 44/53 (83%), Positives = 48/53 (90%)
Frame = -2 / +1
Query: 447 QSPQCLCAVMLSKTAKKSGIKPEVAITIPKRCNLVDRPVGYKCGDYTLP*AAR 289
+SP CLCAVMLS TAK +GIKPEVAITIPKRCN+ DRPVGYKCGDYTLP* A+
Sbjct: 259 KSPSCLCAVMLSGTAKMAGIKPEVAITIPKRCNMADRPVGYKCGDYTLP*VAQ 417
Score = 88.6 bits (187), Expect(2) = 3e-030
Identities = 42/60 (70%), Positives = 44/60 (73%)
Frame = +2 / -2
Query: 266 MHMCSSSSRAAHGRV*SPHL*PTGRSTRLQRLGMVMATSGLIPDFLAVLDSMTAQRHWGL 445
+H+ S A G V*SPHL*PTGRS LQRLGMVMATSGLIP LAV DSMTA R GL
Sbjct: 440 IHLHRHQSWATQGSV*SPHL*PTGRSAMLQRLGMVMATSGLIPAILAVPDSMTAHRQLGL 261
Score = 62.9 bits (131), Expect(2) = 3e-030
Identities = 28/43 (65%), Positives = 30/43 (69%)
Frame = +2 / -2
Query: 452 PMVCTAVQQPLDGAELGFCAADAHGASFSAILSGGVAPHSPAP 580
PMVCTA QQ L+GAE G AA+ HGA AI SG PHSPAP
Sbjct: 257 PMVCTAEQQLLEGAESGSSAAEMHGAMRRAIRSGDDLPHSPAP 129
Score = 55.1 bits (114), Expect(2) = 5e-035
Identities = 22/44 (50%), Positives = 27/44 (61%)
Frame = -2 / +1
Query: 579 GAGECGATPPDRMALKLXXXXXXXXXXXXXXSNGCCTAVHTIGK 448
GAGECG + PDRMAL++ S+ CC+AVHTIGK
Sbjct: 130 GAGECGRSSPDRMALRMAPCISAADEPDSAPSSSCCSAVHTIGK 261
>gb|BF626638.3|BF626638 HVSMEa0018P12f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0018P12f, mRNA sequence
Length = 763
Score = 112 bits (239), Expect(2) = 5e-035
Identities = 44/53 (83%), Positives = 48/53 (90%)
Frame = -2 / +1
Query: 447 QSPQCLCAVMLSKTAKKSGIKPEVAITIPKRCNLVDRPVGYKCGDYTLP*AAR 289
+SP CLCAVMLS TAK +GIKPEVAITIPKRCN+ DRPVGYKCGDYTLP* A+
Sbjct: 268 KSPSCLCAVMLSGTAKMAGIKPEVAITIPKRCNMADRPVGYKCGDYTLP*VAQ 426
Score = 88.6 bits (187), Expect(2) = 2e-030
Identities = 42/60 (70%), Positives = 44/60 (73%)
Frame = +2 / -3
Query: 266 MHMCSSSSRAAHGRV*SPHL*PTGRSTRLQRLGMVMATSGLIPDFLAVLDSMTAQRHWGL 445
+H+ S A G V*SPHL*PTGRS LQRLGMVMATSGLIP LAV DSMTA R GL
Sbjct: 449 IHIHXHQSWATQGSV*SPHL*PTGRSAMLQRLGMVMATSGLIPAILAVPDSMTAHRQLGL 270
Score = 63.4 bits (132), Expect(2) = 2e-030
Identities = 28/43 (65%), Positives = 30/43 (69%)
Frame = +2 / -3
Query: 452 PMVCTAVQQPLDGAELGFCAADAHGASFSAILSGGVAPHSPAP 580
PMVCTA QQ L+GAE G AA+ HGA AI SG PHSPAP
Sbjct: 266 PMVCTAEQQLLEGAESGSSAAEMHGAMRRAIRSGADLPHSPAP 138
Score = 55.1 bits (114), Expect(2) = 5e-035
Identities = 22/44 (50%), Positives = 27/44 (61%)
Frame = -2 / +1
Query: 579 GAGECGATPPDRMALKLXXXXXXXXXXXXXXSNGCCTAVHTIGK 448
GAGECG + PDRMAL++ S+ CC+AVHTIGK
Sbjct: 139 GAGECGRSAPDRMALRMAPCISAADEPDSAPSSSCCSAVHTIGK 270
>gb|BF260973.3|BF260973 HVSMEf0023G21f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0023G21f, mRNA sequence
Length = 651
Score = 112 bits (239), Expect(2) = 5e-035
Identities = 44/53 (83%), Positives = 48/53 (90%)
Frame = -2 / +1
Query: 447 QSPQCLCAVMLSKTAKKSGIKPEVAITIPKRCNLVDRPVGYKCGDYTLP*AAR 289
+SP CLCAVMLS TAK +GIKPEVAITIPKRCN+ DRPVGYKCGDYTLP* A+
Sbjct: 268 KSPSCLCAVMLSGTAKMAGIKPEVAITIPKRCNMADRPVGYKCGDYTLP*VAQ 426
Score = 88.6 bits (187), Expect(2) = 3e-030
Identities = 42/60 (70%), Positives = 44/60 (73%)
Frame = +2 / -2
Query: 266 MHMCSSSSRAAHGRV*SPHL*PTGRSTRLQRLGMVMATSGLIPDFLAVLDSMTAQRHWGL 445
+H+ S A G V*SPHL*PTGRS LQRLGMVMATSGLIP LAV DSMTA R GL
Sbjct: 449 IHLHRHQSWATQGSV*SPHL*PTGRSAMLQRLGMVMATSGLIPAILAVPDSMTAHRQLGL 270
Score = 62.9 bits (131), Expect(2) = 3e-030
Identities = 28/43 (65%), Positives = 30/43 (69%)
Frame = +2 / -2
Query: 452 PMVCTAVQQPLDGAELGFCAADAHGASFSAILSGGVAPHSPAP 580
PMVCTA QQ L+GAE G AA+ HGA AI SG PHSPAP
Sbjct: 266 PMVCTAEQQLLEGAESGSSAAEMHGAMRRAIRSGDDLPHSPAP 138
Score = 55.1 bits (114), Expect(2) = 5e-035
Identities = 22/44 (50%), Positives = 27/44 (61%)
Frame = -2 / +1
Query: 579 GAGECGATPPDRMALKLXXXXXXXXXXXXXXSNGCCTAVHTIGK 448
GAGECG + PDRMAL++ S+ CC+AVHTIGK
Sbjct: 139 GAGECGRSSPDRMALRMAPCISAADEPDSAPSSSCCSAVHTIGK 270
>gb|BQ763768.1|BQ763768 EBro03_SQ005_J07_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ005_J07 5', mRNA sequence
Length = 628
Score = 112 bits (239), Expect(2) = 5e-035
Identities = 44/53 (83%), Positives = 48/53 (90%)
Frame = -2 / +1
Query: 447 QSPQCLCAVMLSKTAKKSGIKPEVAITIPKRCNLVDRPVGYKCGDYTLP*AAR 289
+SP CLCAVMLS TAK +GIKPEVAITIPKRCN+ DRPVGYKCGDYTLP* A+
Sbjct: 277 KSPSCLCAVMLSGTAKMAGIKPEVAITIPKRCNMADRPVGYKCGDYTLP*VAQ 435
Score = 88.6 bits (187), Expect(2) = 3e-030
Identities = 42/60 (70%), Positives = 44/60 (73%)
Frame = +2 / -3
Query: 266 MHMCSSSSRAAHGRV*SPHL*PTGRSTRLQRLGMVMATSGLIPDFLAVLDSMTAQRHWGL 445
+H+ S A G V*SPHL*PTGRS LQRLGMVMATSGLIP LAV DSMTA R GL
Sbjct: 458 IHLHRHQSWATQGSV*SPHL*PTGRSAMLQRLGMVMATSGLIPAILAVPDSMTAHRQLGL 279
Score = 62.9 bits (131), Expect(2) = 3e-030
Identities = 28/43 (65%), Positives = 30/43 (69%)
Frame = +2 / -3
Query: 452 PMVCTAVQQPLDGAELGFCAADAHGASFSAILSGGVAPHSPAP 580
PMVCTA QQ L+GAE G AA+ HGA AI SG PHSPAP
Sbjct: 275 PMVCTAEQQLLEGAESGSSAAEMHGAMRRAIRSGDDLPHSPAP 147
Score = 55.1 bits (114), Expect(2) = 5e-035
Identities = 22/44 (50%), Positives = 27/44 (61%)
Frame = -2 / +1
Query: 579 GAGECGATPPDRMALKLXXXXXXXXXXXXXXSNGCCTAVHTIGK 448
GAGECG + PDRMAL++ S+ CC+AVHTIGK
Sbjct: 148 GAGECGRSSPDRMALRMAPCISAADEPDSAPSSSCCSAVHTIGK 279
>gb|BF257180.2|BF257180 HVSMEf0012B18f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0012B18f, mRNA sequence
Length = 540
Score = 112 bits (239), Expect(2) = 5e-035
Identities = 44/53 (83%), Positives = 48/53 (90%)
Frame = -2 / +1
Query: 447 QSPQCLCAVMLSKTAKKSGIKPEVAITIPKRCNLVDRPVGYKCGDYTLP*AAR 289
+SP CLCAVMLS TAK +GIKPEVAITIPKRCN+ DRPVGYKCGDYTLP* A+
Sbjct: 265 KSPSCLCAVMLSGTAKMAGIKPEVAITIPKRCNMADRPVGYKCGDYTLP*VAQ 423
Score = 88.6 bits (187), Expect(2) = 9e-031
Identities = 42/60 (70%), Positives = 44/60 (73%)
Frame = +2 / -2
Query: 266 MHMCSSSSRAAHGRV*SPHL*PTGRSTRLQRLGMVMATSGLIPDFLAVLDSMTAQRHWGL 445
+H+ S A G V*SPHL*PTGRS LQRLGMVMATSGLIP LAV DSMTA R GL
Sbjct: 446 IHLHRHQSWATQGSV*SPHL*PTGRSAMLQRLGMVMATSGLIPAILAVPDSMTAHRQLGL 267
Score = 64.8 bits (135), Expect(2) = 9e-031
Identities = 29/43 (67%), Positives = 30/43 (69%)
Frame = +2 / -2
Query: 452 PMVCTAVQQPLDGAELGFCAADAHGASFSAILSGGVAPHSPAP 580
PMVCTA QQ L+GAE G AAD HGA AI SG PHSPAP
Sbjct: 263 PMVCTAEQQLLEGAESGSSAADMHGAMRRAIRSGDDLPHSPAP 135
Score = 55.1 bits (114), Expect(2) = 5e-035
Identities = 22/44 (50%), Positives = 27/44 (61%)
Frame = -2 / +1
Query: 579 GAGECGATPPDRMALKLXXXXXXXXXXXXXXSNGCCTAVHTIGK 448
GAGECG + PDRMAL++ S+ CC+AVHTIGK
Sbjct: 136 GAGECGRSSPDRMALRMAPCISAADEPDSAPSSSCCSAVHTIGK 267
>gb|BF257301.3|BF257301 HVSMEf0012H16f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0012H16f, mRNA sequence
Length = 537
Score = 112 bits (239), Expect(2) = 5e-035
Identities = 44/53 (83%), Positives = 48/53 (90%)
Frame = -2 / +2
Query: 447 QSPQCLCAVMLSKTAKKSGIKPEVAITIPKRCNLVDRPVGYKCGDYTLP*AAR 289
+SP CLCAVMLS TAK +GIKPEVAITIPKRCN+ DRPVGYKCGDYTLP* A+
Sbjct: 161 KSPSCLCAVMLSGTAKMAGIKPEVAITIPKRCNMADRPVGYKCGDYTLP*VAQ 319
Score = 88.6 bits (187), Expect(2) = 3e-030
Identities = 42/60 (70%), Positives = 44/60 (73%)
Frame = +2 / -1
Query: 266 MHMCSSSSRAAHGRV*SPHL*PTGRSTRLQRLGMVMATSGLIPDFLAVLDSMTAQRHWGL 445
+H+ S A G V*SPHL*PTGRS LQRLGMVMATSGLIP LAV DSMTA R GL
Sbjct: 342 IHLHRHQSWATQGSV*SPHL*PTGRSAMLQRLGMVMATSGLIPAILAVPDSMTAHRQLGL 163
Score = 62.9 bits (131), Expect(2) = 3e-030
Identities = 28/43 (65%), Positives = 30/43 (69%)
Frame = +2 / -1
Query: 452 PMVCTAVQQPLDGAELGFCAADAHGASFSAILSGGVAPHSPAP 580
PMVCTA QQ L+GAE G AA+ HGA AI SG PHSPAP
Sbjct: 159 PMVCTAEQQLLEGAESGSSAAEMHGAMRRAIRSGDDLPHSPAP 31
Score = 55.1 bits (114), Expect(2) = 5e-035
Identities = 22/44 (50%), Positives = 27/44 (61%)
Frame = -2 / +2
Query: 579 GAGECGATPPDRMALKLXXXXXXXXXXXXXXSNGCCTAVHTIGK 448
GAGECG + PDRMAL++ S+ CC+AVHTIGK
Sbjct: 32 GAGECGRSSPDRMALRMAPCISAADEPDSAPSSSCCSAVHTIGK 163
>gb|BF259798.2|BF259798 HVSMEf0020E17f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0020E17f, mRNA sequence
Length = 534
Score = 112 bits (239), Expect(2) = 5e-035
Identities = 44/53 (83%), Positives = 48/53 (90%)
Frame = -2 / +1
Query: 447 QSPQCLCAVMLSKTAKKSGIKPEVAITIPKRCNLVDRPVGYKCGDYTLP*AAR 289
+SP CLCAVMLS TAK +GIKPEVAITIPKRCN+ DRPVGYKCGDYTLP* A+
Sbjct: 271 KSPSCLCAVMLSGTAKMAGIKPEVAITIPKRCNMADRPVGYKCGDYTLP*VAQ 429
Score = 88.6 bits (187), Expect(2) = 3e-030
Identities = 42/60 (70%), Positives = 44/60 (73%)
Frame = +2 / -2
Query: 266 MHMCSSSSRAAHGRV*SPHL*PTGRSTRLQRLGMVMATSGLIPDFLAVLDSMTAQRHWGL 445
+H+ S A G V*SPHL*PTGRS LQRLGMVMATSGLIP LAV DSMTA R GL
Sbjct: 452 IHLHRHQSWATQGSV*SPHL*PTGRSAMLQRLGMVMATSGLIPAILAVPDSMTAHRQLGL 273
Score = 62.9 bits (131), Expect(2) = 3e-030
Identities = 28/43 (65%), Positives = 30/43 (69%)
Frame = +2 / -2
Query: 452 PMVCTAVQQPLDGAELGFCAADAHGASFSAILSGGVAPHSPAP 580
PMVCTA QQ L+GAE G AA+ HGA AI SG PHSPAP
Sbjct: 269 PMVCTAEQQLLEGAESGSSAAEMHGAMRRAIRSGDDLPHSPAP 141
Score = 55.1 bits (114), Expect(2) = 5e-035
Identities = 22/44 (50%), Positives = 27/44 (61%)
Frame = -2 / +1
Query: 579 GAGECGATPPDRMALKLXXXXXXXXXXXXXXSNGCCTAVHTIGK 448
GAGECG + PDRMAL++ S+ CC+AVHTIGK
Sbjct: 142 GAGECGRSSPDRMALRMAPCISAADEPDSAPSSSCCSAVHTIGK 273
>gb|BQ768251.1|BQ768251 EBro08_SQ011_M05_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ011_M05 5', mRNA sequence
Length = 523
Score = 112 bits (239), Expect(2) = 5e-035
Identities = 44/53 (83%), Positives = 48/53 (90%)
Frame = -2 / +1
Query: 447 QSPQCLCAVMLSKTAKKSGIKPEVAITIPKRCNLVDRPVGYKCGDYTLP*AAR 289
+SP CLCAVMLS TAK +GIKPEVAITIPKRCN+ DRPVGYKCGDYTLP* A+
Sbjct: 277 KSPSCLCAVMLSGTAKMAGIKPEVAITIPKRCNMADRPVGYKCGDYTLP*VAQ 435
Score = 88.6 bits (187), Expect(2) = 3e-030
Identities = 42/60 (70%), Positives = 44/60 (73%)
Frame = +2 / -3
Query: 266 MHMCSSSSRAAHGRV*SPHL*PTGRSTRLQRLGMVMATSGLIPDFLAVLDSMTAQRHWGL 445
+H+ S A G V*SPHL*PTGRS LQRLGMVMATSGLIP LAV DSMTA R GL
Sbjct: 458 IHLHRHQSWATQGSV*SPHL*PTGRSAMLQRLGMVMATSGLIPAILAVPDSMTAHRQLGL 279
Score = 62.9 bits (131), Expect(2) = 3e-030
Identities = 28/43 (65%), Positives = 30/43 (69%)
Frame = +2 / -3
Query: 452 PMVCTAVQQPLDGAELGFCAADAHGASFSAILSGGVAPHSPAP 580
PMVCTA QQ L+GAE G AA+ HGA AI SG PHSPAP
Sbjct: 275 PMVCTAEQQLLEGAESGSSAAEMHGAMRRAIRSGDDLPHSPAP 147
Score = 55.1 bits (114), Expect(2) = 5e-035
Identities = 22/44 (50%), Positives = 27/44 (61%)
Frame = -2 / +1
Query: 579 GAGECGATPPDRMALKLXXXXXXXXXXXXXXSNGCCTAVHTIGK 448
GAGECG + PDRMAL++ S+ CC+AVHTIGK
Sbjct: 148 GAGECGRSSPDRMALRMAPCISAADEPDSAPSSSCCSAVHTIGK 279
>gb|BF627929.2|BF627929 HVSMEb0006K19f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0006K19f, mRNA sequence
Length = 792
Score = 112 bits (239), Expect(2) = 7e-035
Identities = 44/53 (83%), Positives = 48/53 (90%)
Frame = -2 / +2
Query: 447 QSPQCLCAVMLSKTAKKSGIKPEVAITIPKRCNLVDRPVGYKCGDYTLP*AAR 289
+SP CLCAVMLS TAK +GIKPEVAITIPKRCN+ DRPVGYKCGDYTLP* A+
Sbjct: 275 KSPSCLCAVMLSGTAKMAGIKPEVAITIPKRCNMADRPVGYKCGDYTLP*VAQ 433
Score = 88.6 bits (187), Expect(2) = 5e-032
Identities = 42/60 (70%), Positives = 44/60 (73%)
Frame = +2 / -1
Query: 266 MHMCSSSSRAAHGRV*SPHL*PTGRSTRLQRLGMVMATSGLIPDFLAVLDSMTAQRHWGL 445
+H+ S A G V*SPHL*PTGRS LQRLGMVMATSGLIP LAV DSMTA R GL
Sbjct: 456 IHLHRHQSWATQGSV*SPHL*PTGRSAMLQRLGMVMATSGLIPAILAVPDSMTAHRQLGL 277
Score = 68.9 bits (144), Expect(2) = 5e-032
Identities = 33/73 (45%), Positives = 37/73 (50%)
Frame = +2 / -1
Query: 452 PMVCTAVQQPLDGAELGFCAADAHGASFSAILSGGVAPHSPAPXXXXXXXXXXXXXXXSN 631
PMVCTA QQ L+GAE G AA+ HGA AI SG PHSPAP ++
Sbjct: 273 PMVCTAEQQLLEGAESGSSAAEMHGAMRRAIRSGDALPHSPAPSPSATPASATARARTTS 94
Query: 632 KRPFISVACLHSP 670
IS C SP
Sbjct: 93 GLIAISPLCASSP 55
Score = 54.7 bits (113), Expect(2) = 7e-035
Identities = 22/44 (50%), Positives = 26/44 (59%)
Frame = -2 / +2
Query: 579 GAGECGATPPDRMALKLXXXXXXXXXXXXXXSNGCCTAVHTIGK 448
GAGECG PDRMAL++ S+ CC+AVHTIGK
Sbjct: 146 GAGECGRASPDRMALRMAPCISAADEPDSAPSSSCCSAVHTIGK 277
>gb|BM372224.2|BM372224 EBro03_SQ004_F22_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ004_F22 5', mRNA sequence
Length = 436
Score = 111 bits (238), Expect(2) = 7e-035
Identities = 44/52 (84%), Positives = 47/52 (90%)
Frame = -2 / +1
Query: 447 QSPQCLCAVMLSKTAKKSGIKPEVAITIPKRCNLVDRPVGYKCGDYTLP*AA 292
+SP CLCAVMLS TAK +GIKPEVAITIPKRCN+ DRPVGYKCGDYTLP* A
Sbjct: 280 KSPSCLCAVMLSGTAKMAGIKPEVAITIPKRCNMADRPVGYKCGDYTLP*VA 435
Score = 85.4 bits (180), Expect(2) = 3e-029
Identities = 40/51 (78%), Positives = 40/51 (78%)
Frame = +2 / -3
Query: 293 AAHGRV*SPHL*PTGRSTRLQRLGMVMATSGLIPDFLAVLDSMTAQRHWGL 445
A G V*SPHL*PTGRS LQRLGMVMATSGLIP LAV DSMTA R GL
Sbjct: 434 ATQGSV*SPHL*PTGRSAMLQRLGMVMATSGLIPAILAVPDSMTAHRQLGL 282
Score = 62.9 bits (131), Expect(2) = 3e-029
Identities = 28/43 (65%), Positives = 30/43 (69%)
Frame = +2 / -3
Query: 452 PMVCTAVQQPLDGAELGFCAADAHGASFSAILSGGVAPHSPAP 580
PMVCTA QQ L+GAE G AA+ HGA AI SG PHSPAP
Sbjct: 278 PMVCTAEQQLLEGAESGSSAAEMHGAMRRAIRSGDDLPHSPAP 150
Score = 55.1 bits (114), Expect(2) = 7e-035
Identities = 22/44 (50%), Positives = 27/44 (61%)
Frame = -2 / +1
Query: 579 GAGECGATPPDRMALKLXXXXXXXXXXXXXXSNGCCTAVHTIGK 448
GAGECG + PDRMAL++ S+ CC+AVHTIGK
Sbjct: 151 GAGECGRSSPDRMALRMAPCISAADEPDSAPSSSCCSAVHTIGK 282
>gb|BE060209.2|BE060209 HVSMEg0011J02f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0011J02f, mRNA sequence
Length = 542
Score = 110 bits (235), Expect(2) = 2e-034
Identities = 43/53 (81%), Positives = 47/53 (88%)
Frame = -2 / +3
Query: 447 QSPQCLCAVMLSKTAKKSGIKPEVAITIPKRCNLVDRPVGYKCGDYTLP*AAR 289
+SP CLCAVMLS TAK +GIKPEV ITIPKRCN+ DRPVGYKCGDYTLP* A+
Sbjct: 279 KSPSCLCAVMLSGTAKMAGIKPEVGITIPKRCNMADRPVGYKCGDYTLP*VAQ 437
Score = 86.3 bits (182), Expect(2) = 1e-029
Identities = 41/60 (68%), Positives = 43/60 (71%)
Frame = +2 / -2
Query: 266 MHMCSSSSRAAHGRV*SPHL*PTGRSTRLQRLGMVMATSGLIPDFLAVLDSMTAQRHWGL 445
+H+ S A G V*SPHL*PTGRS LQRLGMVM TSGLIP LAV DSMTA R GL
Sbjct: 460 IHLHRHQSWATQGSV*SPHL*PTGRSAMLQRLGMVMPTSGLIPAILAVPDSMTAHRQLGL 281
Score = 62.9 bits (131), Expect(2) = 1e-029
Identities = 28/43 (65%), Positives = 30/43 (69%)
Frame = +2 / -2
Query: 452 PMVCTAVQQPLDGAELGFCAADAHGASFSAILSGGVAPHSPAP 580
PMVCTA QQ L+GAE G AA+ HGA AI SG PHSPAP
Sbjct: 277 PMVCTAEQQLLEGAESGSSAAEMHGAMRRAIRSGDDLPHSPAP 149
Score = 55.1 bits (114), Expect(2) = 2e-034
Identities = 22/44 (50%), Positives = 27/44 (61%)
Frame = -2 / +3
Query: 579 GAGECGATPPDRMALKLXXXXXXXXXXXXXXSNGCCTAVHTIGK 448
GAGECG + PDRMAL++ S+ CC+AVHTIGK
Sbjct: 150 GAGECGRSSPDRMALRMAPCISAADEPDSAPSSSCCSAVHTIGK 281
>gb|BF265744.2|BF265744 HV_CEa0013D13f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0013D13f, mRNA sequence
Length = 569
Score = 108 bits (231), Expect(2) = 6e-034
Identities = 43/53 (81%), Positives = 47/53 (88%)
Frame = -2 / +1
Query: 447 QSPQCLCAVMLSKTAKKSGIKPEVAITIPKRCNLVDRPVGYKCGDYTLP*AAR 289
+SP CLCAVMLS TAK +GIKPEVAITIPKRC + DRPVGYKCGDYTLP* A+
Sbjct: 253 KSPSCLCAVMLSGTAKMAGIKPEVAITIPKRCYMADRPVGYKCGDYTLP*VAQ 411
Score = 85.4 bits (180), Expect(2) = 3e-029
Identities = 41/60 (68%), Positives = 43/60 (71%)
Frame = +2 / -1
Query: 266 MHMCSSSSRAAHGRV*SPHL*PTGRSTRLQRLGMVMATSGLIPDFLAVLDSMTAQRHWGL 445
+H+ S A G V*SPHL*PTGRS QRLGMVMATSGLIP LAV DSMTA R GL
Sbjct: 434 IHLNGHQSWATQGSV*SPHL*PTGRSAM*QRLGMVMATSGLIPAILAVPDSMTAHRQLGL 255
Score = 62.9 bits (131), Expect(2) = 3e-029
Identities = 28/43 (65%), Positives = 30/43 (69%)
Frame = +2 / -1
Query: 452 PMVCTAVQQPLDGAELGFCAADAHGASFSAILSGGVAPHSPAP 580
PMVCTA QQ L+GAE G AA+ HGA AI SG PHSPAP
Sbjct: 251 PMVCTAEQQLLEGAESGSSAAEMHGAMRRAIRSGDDLPHSPAP 123
Score = 55.1 bits (114), Expect(2) = 6e-034
Identities = 22/44 (50%), Positives = 27/44 (61%)
Frame = -2 / +1
Query: 579 GAGECGATPPDRMALKLXXXXXXXXXXXXXXSNGCCTAVHTIGK 448
GAGECG + PDRMAL++ S+ CC+AVHTIGK
Sbjct: 124 GAGECGRSSPDRMALRMAPCISAADEPDSAPSSSCCSAVHTIGK 255
>gb|BF628119.3|BF628119 HVSMEb0003C23f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0003C23f, mRNA sequence
Length = 492
Score = 108 bits (230), Expect(2) = 9e-034
Identities = 43/53 (81%), Positives = 47/53 (88%)
Frame = -2 / +2
Query: 447 QSPQCLCAVMLSKTAKKSGIKPEVAITIPKRCNLVDRPVGYKCGDYTLP*AAR 289
+SP CLCAVMLS TAK +GIKPEVAITI KRCN+ DRPVGYKCGDYTLP* A+
Sbjct: 275 KSPSCLCAVMLSGTAKMAGIKPEVAITIRKRCNMADRPVGYKCGDYTLP*VAQ 433
Score = 84.9 bits (179), Expect(2) = 4e-029
Identities = 41/60 (68%), Positives = 43/60 (71%)
Frame = +2 / -1
Query: 266 MHMCSSSSRAAHGRV*SPHL*PTGRSTRLQRLGMVMATSGLIPDFLAVLDSMTAQRHWGL 445
+H+ S A G V*SPHL*PTGRS LQRL MVMATSGLIP LAV DSMTA R GL
Sbjct: 456 IHLHRHQSWATQGSV*SPHL*PTGRSAMLQRLRMVMATSGLIPAILAVPDSMTAHRQLGL 277
Score = 62.9 bits (131), Expect(2) = 4e-029
Identities = 28/43 (65%), Positives = 30/43 (69%)
Frame = +2 / -1
Query: 452 PMVCTAVQQPLDGAELGFCAADAHGASFSAILSGGVAPHSPAP 580
PMVCTA QQ L+GAE G AA+ HGA AI SG PHSPAP
Sbjct: 273 PMVCTAEQQLLEGAESGSSAAEMHGAMRRAIRSGDDLPHSPAP 145
Score = 55.1 bits (114), Expect(2) = 9e-034
Identities = 22/44 (50%), Positives = 27/44 (61%)
Frame = -2 / +2
Query: 579 GAGECGATPPDRMALKLXXXXXXXXXXXXXXSNGCCTAVHTIGK 448
GAGECG + PDRMAL++ S+ CC+AVHTIGK
Sbjct: 146 GAGECGRSSPDRMALRMAPCISAADEPDSAPSSSCCSAVHTIGK 277
>gb|BQ468701.1|BQ468701 HM02A22r HM Hordeum vulgare subsp. vulgare cDNA clone HM02A22
5-PRIME, mRNA sequence
Length = 455
Score = 143 bits (307), Expect = 9e-034
Identities = 56/93 (60%), Positives = 69/93 (74%)
Frame = -2 / +2
Query: 579 GAGECGATPPDRMALKLXXXXXXXXXXXXXXSNGCCTAVHTIGKQSPQCLCAVMLSKTAK 400
G GECGATPP++ ALKL S+ CC AV IG++SP+CLCAV+LS A+
Sbjct: 140 GKGECGATPPEQEALKLAPCIAAGKDLDSKPSDRCCAAVKEIGERSPECLCAVLLSNIAR 319
Query: 399 KSGIKPEVAITIPKRCNLVDRPVGYKCGDYTLP 301
+ G+KPEVAITIPKRC+L DRPVGYKCG+YT+P
Sbjct: 320 RVGVKPEVAITIPKRCDLADRPVGYKCGNYTMP 418
Score = 125 bits (267), Expect = 3e-028
Identities = 60/93 (64%), Positives = 64/93 (68%)
Frame = +2 / -3
Query: 302 GRV*SPHL*PTGRSTRLQRLGMVMATSGLIPDFLAVLDSMTAQRHWGLCFPMVCTAVQQP 481
G V* PHL*PTGRS R QRLGMVMATSGL P A+L+S TAQRH GL P+ TA QQ
Sbjct: 417 GMV*LPHL*PTGRSARSQRLGMVMATSGLTPTRRAMLESSTAQRHSGLLSPISFTAAQQR 238
Query: 482 LDGAELGFCAADAHGASFSAILSGGVAPHSPAP 580
+G E A HGASF A SGGVAPHSP P
Sbjct: 237 SEGLESRSFPAAMHGASFRASCSGGVAPHSPLP 139
>gb|BF255794.1|BF255794 HVSMEf0007N07f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0007N07f, mRNA sequence
Length = 1011
Score = 104 bits (222), Expect(2) = 1e-032
Identities = 41/56 (73%), Positives = 48/56 (85%)
Frame = -2 / +2
Query: 447 QSPQCLCAVMLSKTAKKSGIKPEVAITIPKRCNLVDRPVGYKCGDYTLP*AARELL 280
+SP CLCAVMLS TAK +GIKPEV+ITIPKRCN+ DRPVGYKCG+YTL *+ L+
Sbjct: 395 KSPSCLCAVMLSGTAKMAGIKPEVSITIPKRCNMADRPVGYKCGEYTLS*SGPALV 562
Score = 76.7 bits (161), Expect(2) = 2e-027
Identities = 35/44 (79%), Positives = 35/44 (79%)
Frame = +2 / -1
Query: 314 SPHL*PTGRSTRLQRLGMVMATSGLIPDFLAVLDSMTAQRHWGL 445
SPHL*PTGRS LQRLGMVM TSGLIP LAV DSMTA R GL
Sbjct: 528 SPHL*PTGRSAMLQRLGMVMETSGLIPAILAVPDSMTAHRQLGL 397
Score = 65.7 bits (137), Expect(2) = 2e-027
Identities = 32/73 (43%), Positives = 36/73 (49%)
Frame = +2 / -1
Query: 452 PMVCTAVQQPLDGAELGFCAADAHGASFSAILSGGVAPHSPAPXXXXXXXXXXXXXXXSN 631
PMVCTA QQ L+GAE G AA+ HGA AI SG PHSPAP ++
Sbjct: 393 PMVCTAEQQLLEGAESGSSAAEMHGAMRRAIRSGDDLPHSPAPSPSATPASATARARTTS 214
Query: 632 KRPFISVACLHSP 670
IS C P
Sbjct: 213 GLIAISPLCASXP 175
Score = 55.1 bits (114), Expect(2) = 1e-032
Identities = 22/44 (50%), Positives = 27/44 (61%)
Frame = -2 / +2
Query: 579 GAGECGATPPDRMALKLXXXXXXXXXXXXXXSNGCCTAVHTIGK 448
GAGECG + PDRMAL++ S+ CC+AVHTIGK
Sbjct: 266 GAGECGRSSPDRMALRMAPCISAADEPDSAPSSSCCSAVHTIGK 397
>gb|BM444307.1|BM444307 EBem09_SQ004_M10_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ004_M10 5', mRNA sequence
Length = 410
Score = 102 bits (218), Expect(2) = 4e-032
Identities = 39/47 (82%), Positives = 42/47 (89%)
Frame = -2 / +3
Query: 447 QSPQCLCAVMLSKTAKKSGIKPEVAITIPKRCNLVDRPVGYKCGDYT 307
+SP CLCAVMLS TAK +GIKPEV ITIPKRCN+ DRPVGYKCGDYT
Sbjct: 270 KSPSCLCAVMLSGTAKMAGIKPEVVITIPKRCNMADRPVGYKCGDYT 410
Score = 79.4 bits (167), Expect(2) = 2e-027
Identities = 37/46 (80%), Positives = 37/46 (80%)
Frame = +2 / -2
Query: 308 V*SPHL*PTGRSTRLQRLGMVMATSGLIPDFLAVLDSMTAQRHWGL 445
V*SPHL*PTGRS LQRLGMVM TSGLIP LAV DSMTA R GL
Sbjct: 409 V*SPHL*PTGRSAMLQRLGMVMTTSGLIPAILAVPDSMTAHRQLGL 272
Score = 62.9 bits (131), Expect(2) = 2e-027
Identities = 28/43 (65%), Positives = 30/43 (69%)
Frame = +2 / -2
Query: 452 PMVCTAVQQPLDGAELGFCAADAHGASFSAILSGGVAPHSPAP 580
PMVCTA QQ L+GAE G AA+ HGA AI SG PHSPAP
Sbjct: 268 PMVCTAEQQLLEGAESGSSAAEMHGAMRRAIRSGDDLPHSPAP 140
Score = 55.1 bits (114), Expect(2) = 4e-032
Identities = 22/44 (50%), Positives = 27/44 (61%)
Frame = -2 / +3
Query: 579 GAGECGATPPDRMALKLXXXXXXXXXXXXXXSNGCCTAVHTIGK 448
GAGECG + PDRMAL++ S+ CC+AVHTIGK
Sbjct: 141 GAGECGRSSPDRMALRMAPCISAADEPDSAPSSSCCSAVHTIGK 272
>gb|BM443669.2|BM443669 EBem09_SQ001_B17_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ001_B17 5', mRNA sequence
Length = 403
Score = 136 bits (292), Expect = 1e-031
Identities = 53/62 (85%), Positives = 58/62 (93%)
Frame = -2 / +1
Query: 483 NGCCTAVHTIGKQSPQCLCAVMLSKTAKKSGIKPEVAITIPKRCNLVDRPVGYKCGDYTL 304
+GCCTAVHTIGKQSP+CLCAVMLS AK +GIKPEVA++IPKRCNLVDRPVGYKCG YTL
Sbjct: 10 SGCCTAVHTIGKQSPKCLCAVMLSDIAKSAGIKPEVAMSIPKRCNLVDRPVGYKCGAYTL 189
Query: 303 P* 298
P*
Sbjct: 190 P* 195
Score = 129 bits (276), Expect = 2e-029
Identities = 54/64 (84%), Positives = 58/64 (90%)
Frame = +2 / -3
Query: 299 HGRV*SPHL*PTGRSTRLQRLGMVMATSGLIPDFLAVLDSMTAQRHWGLCFPMVCTAVQQ 478
HGRV*+PHL*PTGRSTRLQRLGM MATSGL+P LA+ +SMTAQRH GLCFPMVCTAVQ
Sbjct: 194 HGRV*APHL*PTGRSTRLQRLGMDMATSGLMPALLAMSESMTAQRHLGLCFPMVCTAVQH 15
Query: 479 PLDG 490
PLDG
Sbjct: 14 PLDG 3
>gb|BI777138.2|BI777138 EBro03_SQ002_B22_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ002_B22 5', mRNA sequence
Length = 273
Score = 111 bits (238), Expect(2) = 6e-031
Identities = 44/52 (84%), Positives = 47/52 (90%)
Frame = -2 / +3
Query: 447 QSPQCLCAVMLSKTAKKSGIKPEVAITIPKRCNLVDRPVGYKCGDYTLP*AA 292
+SP CLCAVMLS TAK +GIKPEVAITIPKRCN+ DRPVGYKCGDYTLP* A
Sbjct: 117 KSPSCLCAVMLSGTAKMAGIKPEVAITIPKRCNMADRPVGYKCGDYTLP*VA 272
Score = 85.4 bits (180), Expect(2) = 2e-025
Identities = 40/51 (78%), Positives = 40/51 (78%)
Frame = +2 / -3
Query: 293 AAHGRV*SPHL*PTGRSTRLQRLGMVMATSGLIPDFLAVLDSMTAQRHWGL 445
A G V*SPHL*PTGRS LQRLGMVMATSGLIP LAV DSMTA R GL
Sbjct: 271 ATQGSV*SPHL*PTGRSAMLQRLGMVMATSGLIPAILAVPDSMTAHRQLGL 119
Score = 49.2 bits (101), Expect(2) = 2e-025
Identities = 23/38 (60%), Positives = 25/38 (65%)
Frame = +2 / -3
Query: 452 PMVCTAVQQPLDGAELGFCAADAHGASFSAILSGGVAP 565
PMVCTA QQ L+GAE G AA+ HGA AI SG P
Sbjct: 115 PMVCTAEQQLLEGAESGSSAAEMHGAMRRAIRSGDDLP 2
Score = 41.4 bits (84), Expect(2) = 6e-031
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = -2 / +3
Query: 564 GATPPDRMALKLXXXXXXXXXXXXXXSNGCCTAVHTIGK 448
G + PDRMAL++ S+ CC+AVHTIGK
Sbjct: 3 GRSSPDRMALRMAPCISAADEPDSAPSSSCCSAVHTIGK 119
>gb|BM369950.2|BM369950 EBro08_SQ002_H05_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ002_H05 5', mRNA sequence
Length = 278
Score = 112 bits (239), Expect(2) = 2e-030
Identities = 44/53 (83%), Positives = 48/53 (90%)
Frame = -2 / +3
Query: 447 QSPQCLCAVMLSKTAKKSGIKPEVAITIPKRCNLVDRPVGYKCGDYTLP*AAR 289
+SP CLCAVMLS TAK +GIKPEVAITIPKRCN+ DRPVGYKCGDYTLP* A+
Sbjct: 105 KSPSCLCAVMLSGTAKMAGIKPEVAITIPKRCNMADRPVGYKCGDYTLP*VAQ 263
Score = 85.8 bits (181), Expect(2) = 3e-025
Identities = 41/53 (77%), Positives = 41/53 (77%)
Frame = +2 / -2
Query: 287 SRAAHGRV*SPHL*PTGRSTRLQRLGMVMATSGLIPDFLAVLDSMTAQRHWGL 445
S A G V*SPHL*PTGRS LQRLGMVMATSGLIP LAV DSMTA R GL
Sbjct: 265 SWATQGSV*SPHL*PTGRSAMLQRLGMVMATSGLIPAILAVPDSMTAHRQLGL 107
Score = 48.3 bits (99), Expect(2) = 3e-025
Identities = 22/34 (64%), Positives = 24/34 (70%)
Frame = +2 / -2
Query: 452 PMVCTAVQQPLDGAELGFCAADAHGASFSAILSG 553
PMVCTA QQ L+GAE G AA+ HGA AI SG
Sbjct: 103 PMVCTAEQQLLEGAESGSSAAEMHGAMRRAIRSG 2
Score = 39.1 bits (79), Expect(2) = 2e-030
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = -2 / +3
Query: 552 PDRMALKLXXXXXXXXXXXXXXSNGCCTAVHTIGK 448
PDRMAL++ S+ CC+AVHTIGK
Sbjct: 3 PDRMALRMAPCISAADEPDSAPSSSCCSAVHTIGK 107
>gb|BI778861.2|BI778861 EBro01_SQ001_M16_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ001_M16 5', mRNA sequence
Length = 528
Score = 100 bits (214), Expect(3) = 9e-030
Identities = 39/46 (84%), Positives = 42/46 (91%)
Frame = -2 / +2
Query: 435 CLCAVMLSKTAKKSGIKPEVAITIPKRCNLVDRPVGYKCGDYTLP* 298
CLCAVMLS TA+ +GIKPEVAITIPKRCN+ DRPVGY CGDYTLP*
Sbjct: 263 CLCAVMLSGTARMAGIKPEVAITIPKRCNMADRPVGYNCGDYTLP* 400
Score = 76.2 bits (160), Expect(3) = 3e-023
Identities = 36/44 (81%), Positives = 36/44 (81%)
Frame = +2 / -1
Query: 302 GRV*SPHL*PTGRSTRLQRLGMVMATSGLIPDFLAVLDSMTAQR 433
G V*SP L*PTGRS LQRLGMVMATSGLIP LAV DSMTA R
Sbjct: 396 GSV*SPQL*PTGRSAMLQRLGMVMATSGLIPAILAVPDSMTAHR 265
Score = 36.8 bits (74), Expect(3) = 3e-023
Identities = 17/49 (34%), Positives = 21/49 (42%)
Frame = +2 / -1
Query: 509 AADAHGASFSAILSGGVAPHSPAPXXXXXXXXXXXXXXXSNKRPFISVA 655
AA+ HGA AI SG PHSPAP S I+++
Sbjct: 189 AAEMHGAMRRAIRSGDDLPHSPAPSPSATPASATATARASTTSGLIAIS 43
Score = 35.0 bits (70), Expect(3) = 9e-030
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = -2 / +2
Query: 579 GAGECGATPPDRMALKL 529
GAGECG + PDRMAL++
Sbjct: 119 GAGECGRSSPDRMALRM 169
Score = 32.7 bits (65), Expect(3) = 3e-023
Identities = 14/21 (66%), Positives = 15/21 (71%)
Frame = +2 / -1
Query: 452 PMVCTAVQQPLDGAELGFCAA 514
PMVCTA QQ L+GAE G A
Sbjct: 249 PMVCTAEQQLLEGAESGSSTA 187
Score = 31.8 bits (63), Expect(3) = 9e-030
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = -1 / +1
Query: 496 LGAVQRLLHGGAHHR 452
LGA+Q+LL GGAHHR
Sbjct: 205 LGALQQLLLGGAHHR 249
>gb|BI960428.1|BI960428 HVSMEn0024J02f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0024J02f, mRNA sequence
Length = 621
Score = 95.0 bits (201), Expect(2) = 3e-029
Identities = 38/53 (71%), Positives = 42/53 (79%)
Frame = -2 / +1
Query: 447 QSPQCLCAVMLSKTAKKSGIKPEVAITIPKRCNLVDRPVGYKCGDYTLP*AAR 289
+SP CLCAVMLS T +GIKPE ITIPKRCN+ DRPV YKCG YTLP* A+
Sbjct: 271 KSPSCLCAVMLSGTDNMAGIKPEDPITIPKRCNMADRPVRYKCGHYTLP*VAQ 429
Score = 76.7 bits (161), Expect(2) = 1e-026
Identities = 37/60 (61%), Positives = 41/60 (68%)
Frame = +2 / -2
Query: 266 MHMCSSSSRAAHGRV*SPHL*PTGRSTRLQRLGMVMATSGLIPDFLAVLDSMTAQRHWGL 445
+H+ S A G V* PHL* TGRS LQRLGMVM +SGLIP L+V DSMTA R GL
Sbjct: 452 IHVHRHQSWATQGSV*CPHL*RTGRSAMLQRLGMVMGSSGLIPAMLSVPDSMTAHRQLGL 273
Score = 62.9 bits (131), Expect(2) = 1e-026
Identities = 28/43 (65%), Positives = 30/43 (69%)
Frame = +2 / -2
Query: 452 PMVCTAVQQPLDGAELGFCAADAHGASFSAILSGGVAPHSPAP 580
PMVCTA QQ L+GAE G AA+ HGA AI SG PHSPAP
Sbjct: 269 PMVCTAEQQLLEGAESGSSAAEMHGAMSRAIRSGEDLPHSPAP 141
Score = 53.3 bits (110), Expect(2) = 3e-029
Identities = 22/44 (50%), Positives = 26/44 (59%)
Frame = -2 / +1
Query: 579 GAGECGATPPDRMALKLXXXXXXXXXXXXXXSNGCCTAVHTIGK 448
GAGECG + PDRMAL + S+ CC+AVHTIGK
Sbjct: 142 GAGECGRSSPDRMALLMAPCISAADEPDSAPSSSCCSAVHTIGK 273
>gb|BF065110.2|BF065110 HV_CEb0023A22f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0023A22f, mRNA sequence
Length = 565
Score = 96.8 bits (205), Expect(2) = 2e-028
Identities = 36/52 (69%), Positives = 45/52 (86%)
Frame = -2 / +3
Query: 447 QSPQCLCAVMLSKTAKKSGIKPEVAITIPKRCNLVDRPVGYKCGDYTLP*AA 292
+SP+CLCAVMLS TA+++G+ P VA+TIPKRC + +RPVGYKCG YTLP* A
Sbjct: 258 RSPKCLCAVMLSSTARQAGVNPAVAMTIPKRCAIANRPVGYKCGPYTLP*GA 413
Score = 88.6 bits (187), Expect(2) = 4e-029
Identities = 40/56 (71%), Positives = 44/56 (78%)
Frame = +2 / -1
Query: 278 SSSSRAAHGRV*SPHL*PTGRSTRLQRLGMVMATSGLIPDFLAVLDSMTAQRHWGL 445
SS++ A HGRV PHL*PTGR QRLGMVMAT+GL P + AVLDSMTAQRH GL
Sbjct: 427 SSTTCAPHGRVYGPHL*PTGRLAMAQRLGMVMATAGLTPAWRAVLDSMTAQRHLGL 260
Score = 59.3 bits (123), Expect(2) = 4e-029
Identities = 26/43 (60%), Positives = 28/43 (65%)
Frame = +2 / -1
Query: 452 PMVCTAVQQPLDGAELGFCAADAHGASFSAILSGGVAPHSPAP 580
PM+ QQP + GF A AHGASFSAILS G PHSPAP
Sbjct: 256 PMLRICAQQPGATLDRGFWVAAAHGASFSAILSAGTRPHSPAP 128
Score = 48.7 bits (100), Expect(2) = 2e-028
Identities = 19/44 (43%), Positives = 23/44 (52%)
Frame = -2 / +3
Query: 579 GAGECGATPPDRMALKLXXXXXXXXXXXXXXSNGCCTAVHTIGK 448
GAGECG P DRMALKL + GCC + +IG+
Sbjct: 129 GAGECGRVPADRMALKLAPCAAATQNPRSKVAPGCCAQIRSIGR 260
>gb|BI958660.1|BI958660 HVSMEn0016B18f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0016B18f, mRNA sequence
Length = 632
Score = 98.7 bits (209), Expect(2) = 5e-028
Identities = 39/53 (73%), Positives = 44/53 (83%)
Frame = -2 / +3
Query: 447 QSPQCLCAVMLSKTAKKSGIKPEVAITIPKRCNLVDRPVGYKCGDYTLP*AAR 289
+SP CLCAVMLS TAK +GIKPEVAITIPKR N+ DRP+GY CGDYTL * +
Sbjct: 273 KSPSCLCAVMLSGTAKMAGIKPEVAITIPKRLNMADRPLGYNCGDYTLA*VGQ 431
Score = 77.1 bits (162), Expect(3) = 1e-025
Identities = 37/60 (61%), Positives = 41/60 (68%)
Frame = +2 / -2
Query: 266 MHMCSSSSRAAHGRV*SPHL*PTGRSTRLQRLGMVMATSGLIPDFLAVLDSMTAQRHWGL 445
+H+ + S RV*SP L*P GRS +RLGMVMATSGLIP LAV DSMTA R GL
Sbjct: 454 IHLHAHQSWPTQARV*SPQL*PRGRSAMFKRLGMVMATSGLIPAILAVPDSMTAHRQLGL 275
Score = 57.0 bits (118), Expect(3) = 1e-025
Identities = 26/42 (61%), Positives = 28/42 (66%)
Frame = +2 / -2
Query: 455 MVCTAVQQPLDGAELGFCAADAHGASFSAILSGGVAPHSPAP 580
MVCTA QQ L+GAE G AA+ HGA AI G PHSPAP
Sbjct: 268 MVCTAEQQLLEGAESGSSAAEMHGAMRRAIPPGDDLPHSPAP 143
Score = 45.5 bits (93), Expect(2) = 5e-028
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = -2 / +3
Query: 579 GAGECGATPPDRMALKLXXXXXXXXXXXXXXSNGCCTAVHTIGK 448
GAGECG + P MAL++ S+ CC+AVHTI K
Sbjct: 144 GAGECGRSSPGGMALRMAPCISAADEPDSAPSSSCCSAVHTIXK 275
Score = 21.7 bits (41), Expect(3) = 1e-025
Identities = 6/20 (30%), Positives = 12/20 (60%)
Frame = +1 / -1
Query: 613 QGEDEQQEALHIGSLSPLPC 672
QG+D+++ H+ + PC
Sbjct: 110 QGQDDERPHCHLSLCASSPC 51
>gb|BI960467.1|BI960467 HVSMEn0024L06f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0024L06f, mRNA sequence
Length = 635
Score = 90.4 bits (191), Expect(2) = 2e-025
Identities = 38/53 (71%), Positives = 41/53 (77%)
Frame = -2 / +2
Query: 447 QSPQCLCAVMLSKTAKKSGIKPEVAITIPKRCNLVDRPVGYKCGDYTLP*AAR 289
+SP CLCAVMLS TA +GIKPEVAI IPKR N+ DRP GYKCG Y L * AR
Sbjct: 272 KSPSCLCAVMLSGTANMAGIKPEVAIAIPKRWNMGDRPFGYKCGYYALA*LAR 430
Score = 75.8 bits (159), Expect(3) = 8e-026
Identities = 36/60 (60%), Positives = 39/60 (65%)
Frame = +2 / -3
Query: 266 MHMCSSSSRAAHGRV*SPHL*PTGRSTRLQRLGMVMATSGLIPDFLAVLDSMTAQRHWGL 445
+H+ SRA+ * PHL P GRS QRLGM MATSGLIP LAV DSMTA R GL
Sbjct: 453 IHLHRHHSRASQASA*YPHLYPKGRSPMFQRLGMAMATSGLIPAMLAVPDSMTAHRQLGL 274
Score = 59.3 bits (123), Expect(3) = 8e-026
Identities = 25/43 (58%), Positives = 29/43 (67%)
Frame = +2 / -3
Query: 452 PMVCTAVQQPLDGAELGFCAADAHGASFSAILSGGVAPHSPAP 580
PMVCTA QQ +GAE G AA+ HGA + + SG PHSPAP
Sbjct: 270 PMVCTAEQQLXEGAESGSSAAEMHGAMXTPLRSGDDLPHSPAP 142
Score = 45.1 bits (92), Expect(2) = 2e-025
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = -2 / +2
Query: 579 GAGECGATPPDRMALKLXXXXXXXXXXXXXXSNGCCTAVHTIGK 448
GAGECG + P+R + + S CC+AVHTIGK
Sbjct: 143 GAGECGRSSPERRGVXMAPCISAADEPDSAPSXSCCSAVHTIGK 274
Score = 21.7 bits (41), Expect(3) = 8e-026
Identities = 6/20 (30%), Positives = 12/20 (60%)
Frame = +1 / -2
Query: 613 QGEDEQQEALHIGSLSPLPC 672
QG+D+++ H+ + PC
Sbjct: 109 QGQDDERPHCHLSLCASSPC 50
>gb|BQ661125.1|BQ661125 HM02A22u HM Hordeum vulgare subsp. vulgare cDNA clone HM02A22
3-PRIME, mRNA sequence
Length = 478
Score = 115 bits (245), Expect = 3e-025
Identities = 41/59 (69%), Positives = 51/59 (86%)
Frame = -2 / -2
Query: 477 CCTAVHTIGKQSPQCLCAVMLSKTAKKSGIKPEVAITIPKRCNLVDRPVGYKCGDYTLP 301
CC AV IG++SP+CLCAV+LS ++ G+KPEVAITIPKRC+L DRPVGYKCG+YT+P
Sbjct: 444 CCAAVKEIGERSPECLCAVLLSNIVRRVGVKPEVAITIPKRCDLADRPVGYKCGNYTMP 268
>gb|BF260771.3|BF260771 HVSMEf0022O11f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0022O11f, mRNA sequence
Length = 541
Score = 79.4 bits (167), Expect(3) = 4e-025
Identities = 31/40 (77%), Positives = 34/40 (85%)
Frame = -2 / +1
Query: 447 QSPQCLCAVMLSKTAKKSGIKPEVAITIPKRCNLVDRPVG 328
+SP CLCAVMLS T K +GIKPEVAITIP RCN+ DRPVG
Sbjct: 268 KSPSCLCAVMLSGTGKMAGIKPEVAITIPMRCNMADRPVG 387
Score = 64.8 bits (135), Expect(2) = 9e-022
Identities = 29/39 (74%), Positives = 30/39 (76%)
Frame = +2 / -3
Query: 329 PTGRSTRLQRLGMVMATSGLIPDFLAVLDSMTAQRHWGL 445
PTGRS LQR+GMVMATSGLIP L V DSMTA R GL
Sbjct: 386 PTGRSAMLQRMGMVMATSGLIPAILPVPDSMTAHRQLGL 270
Score = 58.3 bits (121), Expect(2) = 9e-022
Identities = 27/43 (62%), Positives = 28/43 (65%)
Frame = +2 / -3
Query: 452 PMVCTAVQQPLDGAELGFCAADAHGASFSAILSGGVAPHSPAP 580
PMVCTA QQ L+GAE G AA HGA AI SG PH PAP
Sbjct: 266 PMVCTAEQQLLEGAESGSSAAQMHGAMRRAIRSGDDLPH*PAP 138
Score = 50.1 bits (103), Expect(3) = 4e-025
Identities = 21/44 (47%), Positives = 26/44 (59%)
Frame = -2 / +1
Query: 579 GAGECGATPPDRMALKLXXXXXXXXXXXXXXSNGCCTAVHTIGK 448
GAG CG + PDRMAL++ S+ CC+AVHTIGK
Sbjct: 139 GAG*CGRSSPDRMALRMAPCIWAADEPDSAPSSSCCSAVHTIGK 270
Score = 22.6 bits (43), Expect(3) = 4e-025
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -2 / +3
Query: 336 PVGYKCGDYTLP*AAR 289
P CG YTLP* A+
Sbjct: 378 PCRLMCGYYTLP*VAQ 425
>gb|BQ767572.1|BQ767572 EBro08_SQ009_D08_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ009_D08 5', mRNA sequence
Length = 372
Score = 112 bits (239), Expect = 2e-024
Identities = 44/53 (83%), Positives = 48/53 (90%)
Frame = -2 / +3
Query: 447 QSPQCLCAVMLSKTAKKSGIKPEVAITIPKRCNLVDRPVGYKCGDYTLP*AAR 289
+SP CLCAVMLS TAK +GIKPEVAITIPKRCN+ DRPVGYKCGDYTLP* A+
Sbjct: 6 KSPSCLCAVMLSGTAKMAGIKPEVAITIPKRCNMADRPVGYKCGDYTLP*VAQ 164
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 283,632,011
Number of Sequences: 312970
Number of extensions: 4367568
Number of successful extensions: 55654
Number of sequences better than 1.0e-020: 48
length of database: 58,378,179
effective HSP length: 51
effective length of database: 42,416,709
effective search space used: 7295673948
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)