TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3802552.2.1
         (252 letters)

Database: Hordeum_nucl_with_EST.fasta 
           312,970 sequences; 175,134,539 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AW982677.3|AW982677  HVSMEg0003O15f Hordeum vulgare pre-a...   118   5e-027
emb|Y09233.1|HVCHS2  H.vulgare mRNA for homoeriodictyol/erio...   116   3e-026
gb|AV909045.1|AV909045  AV909045 K. Sato unpublished cDNA li...   107   1e-023

>gb|AW982677.3|AW982677 HVSMEg0003O15f Hordeum vulgare pre-anthesis spike EST library
           HVcDNA0008 (white to yellow anther) Hordeum vulgare
           subsp. vulgare cDNA clone HVSMEg0003O15f, mRNA sequence
          Length = 883

 Score =  118 bits (253), Expect = 5e-027
 Identities = 54/80 (67%), Positives = 55/80 (68%)
 Frame = +1 / +2

                                                                       
Query: 13  YQQGWFAGGTVLRVAKDLAENNRGARVLVVCSEITXVTFRGPSESHLDSLVGQALFXXXX 192
           YQQG FAGGTVLR+AKDLAENNR ARVLVVCSEIT V  RGP E HLDSLVGQALF    
Sbjct: 296 YQQGCFAGGTVLRLAKDLAENNRCARVLVVCSEITAVNLRGPHECHLDSLVGQALFGDGA 475

                               
Query: 193 XXXXXXXXXXXXXERPLFQL 252
                        ERPL QL
Sbjct: 476 TAVIIGAYPDVSVERPLLQL 535



>emb|Y09233.1|HVCHS2 H.vulgare mRNA for homoeriodictyol/eriodictyol chalcone synthase
          Length = 1493

 Score =  116 bits (248), Expect = 3e-026
 Identities = 50/80 (62%), Positives = 56/80 (70%)
 Frame = +1 / +2

                                                                       
Query: 13  YQQGWFAGGTVLRVAKDLAENNRGARVLVVCSEITXVTFRGPSESHLDSLVGQALFXXXX 192
           YQQG F G TVLR+AKD+AENNRGARVLVVCSEIT + FRGP +SHLDSLVG ALF    
Sbjct: 515 YQQGCFGGATVLRLAKDIAENNRGARVLVVCSEITAMAFRGPCKSHLDSLVGHALFGDGA 694

                               
Query: 193 XXXXXXXXXXXXXERPLFQL 252
                        E+P+FQL
Sbjct: 695 AAAIIGADPDQLDEQPVFQL 754



>gb|AV909045.1|AV909045 AV909045 K. Sato unpublished cDNA library, cv. Akashinriki
           vegetative stage leaves Hordeum vulgare subsp. vulgare
           cDNA clone baak11g05 5', mRNA sequence
          Length = 645

 Score =  107 bits (229), Expect = 1e-023
 Identities = 49/70 (70%), Positives = 50/70 (71%)
 Frame = +1 / +1

                                                                       
Query: 43  VLRVAKDLAENNRGARVLVVCSEITXVTFRGPSESHLDSLVGQALFXXXXXXXXXXXXXX 222
           VLR+AK LAENNRGARVLVVCSEIT VTFRGP ESHLDSLVGQALF              
Sbjct: 10  VLRLAKXLAENNRGARVLVVCSEITAVTFRGPHESHLDSLVGQALFGDGAAAVIIGADPD 189

                     
Query: 223 XXXERPLFQL 252
              ERPLFQL
Sbjct: 190 VSVERPLFQL 219



  Database: Hordeum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:16 PM
  Number of letters in database: 175,134,539
  Number of sequences in database:  312,970
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 77,600,032
Number of Sequences: 312970
Number of extensions: 1095958
Number of successful extensions: 214167
Number of sequences better than 1.0e-020: 4
length of database: 58,378,179
effective HSP length: 47
effective length of database: 43,668,589
effective search space used: 1572069204
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)