TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3802485.2.1
(1118 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB875581.1|CB875581 HX08L22w HX Hordeum vulgare subsp. v... 232 e-108
gb|BG344569.1|BG344569 HVSMEg0009K15f Hordeum vulgare pre-a... 233 7e-099
gb|BF256250.2|BF256250 HVSMEf0009E08f Hordeum vulgare seedl... 233 3e-093
gb|CA007884.1|CA007884 HU09E15r HU Hordeum vulgare subsp. v... 233 5e-084
gb|CB883381.1|CB883381 HQ02B06w HQ Hordeum vulgare subsp. v... 188 7e-075
gb|CA025473.1|CA025473 HZ52E08r HZ Hordeum vulgare subsp. v... 195 4e-049
gb|BG343247.2|BG343247 HVSMEg0005D12f Hordeum vulgare pre-a... 179 3e-044
gb|BG417572.2|BG417572 HVSMEk0018E04f Hordeum vulgare testa... 139 9e-035
>gb|CB875581.1|CB875581 HX08L22w HX Hordeum vulgare subsp. vulgare cDNA clone HX08L22
3-PRIME, mRNA sequence
Length = 698
Score = 232 bits (501), Expect(2) = e-108
Identities = 96/135 (71%), Positives = 112/135 (82%)
Frame = +2 / +2
Query: 602 SVTKARSILLNGAVRKGERLVPPVSFDLFMRATFPVSNARVKATERFEAAYPMIKELALA 781
+ +KAR++LLNGAVRKGERLVP + DLFMR TFPV NARVKATERFEAAYP+IKELAL
Sbjct: 269 NASKARAMLLNGAVRKGERLVPAGTLDLFMRCTFPVPNARVKATERFEAAYPIIKELALV 448
Query: 782 GPPGSKTVKQASQQLLPLCAKAMQENNAELTREAVDVFIWCLTQNAESYKXXERIYLENI 961
G PGSK VKQASQQLLPL KAMQENNAEL +EA DVF+WCLTQ+ +SYK ++++ ENI
Sbjct: 449 GTPGSKAVKQASQQLLPLAVKAMQENNAELAKEATDVFVWCLTQSPDSYKQWDKLHAENI 628
Query: 962 EAXXAVLSKVVIDWR 1006
A AVL K+ DW+
Sbjct: 629 XASVAVLRKITADWK 673
Score = 184 bits (397), Expect(2) = 7e-085
Identities = 83/122 (68%), Positives = 93/122 (76%)
Frame = -3 / -3
Query: 975 AXXASIFSR*ILSXCLYDSAF*VKHQMKTSTASLVSSALFSCIAFAHKGKSCCDACFTVF 796
A A +FS * LS CL +S *V+HQ TS ASL SSALFSCIAF KG+SCCDACFT
Sbjct: 642 ATLAXMFSA*SLSHCL*ESGL*VRHQTNTSVASLASSALFSCIAFTAKGRSCCDACFTAL 463
Query: 795 EPGGPARANSLIIG*AASNLSVAFTRALETGNVALMNKSNETGGTKRSPFLTAPFNNIER 616
EPG P RA+S IIG*AASNLSVA TRAL TGNV L+ +S GT+RSPFLTAPF++I R
Sbjct: 462 EPGVPTRASSFIIG*AASNLSVALTRALGTGNVHLIKRSKVPAGTRRSPFLTAPFSSIAR 283
Query: 615 AL 610
AL
Sbjct: 282 AL 277
Score = 181 bits (390), Expect(2) = e-108
Identities = 73/91 (80%), Positives = 83/91 (91%)
Frame = +2 / +2
Query: 344 FVVLAMTLRRKPDVLVNVMPKIMGNNKYLGQEKLPIIVWVIAQASQGDLVSGMFCWAHSL 523
FVVLA+TLRRKPDVL+++ PK++GN+KYLGQEKLPII WVI QASQGDLVSGMFCW+HSL
Sbjct: 2 FVVLALTLRRKPDVLISLSPKLVGNSKYLGQEKLPIIAWVINQASQGDLVSGMFCWSHSL 181
Query: 524 FPTLCAKSSGNPLARDLVLQLLERILSVTKA 616
FPT+CAKSSGNP +RDLVLQLLER LS A
Sbjct: 182 FPTVCAKSSGNPQSRDLVLQLLERFLSTPNA 274
Score = 163 bits (350), Expect(2) = 2e-066
Identities = 73/141 (51%), Positives = 96/141 (68%)
Frame = -2 / -2
Query: 1030 RTELRRXNPPINHNFAQDSXXGFNIFKINSFXXLVRLCILS*APNENINSLPGELCVVFL 851
R L R P++ +FAQDS G ++ ++ LV + LS AP+E+I+ L GELC++FL
Sbjct: 697 RV*LGRERLPVSSDFAQDSNTGXDVLRMKLVPLLVGVWTLSQAPDEHISGLLGELCIIFL 518
Query: 850 HCFCTQR*KLL*CLFHSF*ARRTGKSQLLDHWVGCFKPFCSLHSSIRNRKCGSHEQVK*N 671
HC +QR KLL*CL HSF AR T KSQLL + VGCFKPFCSL + IR+RKC SH++++ +
Sbjct: 517 HCLHSQRQKLL*CLLHSFRARSTNKSQLLYYRVGCFKPFCSLDTCIRHRKCASHKEIQGS 338
Query: 670 RGN*AFSLSNSTIQ*YRTSFG 608
N A L N IQ*+ SFG
Sbjct: 337 SRNQALPLPNCAIQ*HSPSFG 275
Score = 150 bits (322), Expect(2) = 7e-085
Identities = 67/90 (74%), Positives = 72/90 (80%)
Frame = -3 / -3
Query: 615 ALVTDKILSSNCKTKSLARGFPLDFAHNVGNRE*AQQNMPDTRSP*EA*AITQTMMGSFS 436
AL DK LSSNCKT+SL GFPLDFAH VGNRE* QQN+P+TRSP*+A* ITQ MMGSFS
Sbjct: 273 ALGVDKNLSSNCKTRSLD*GFPLDFAHTVGNRE*DQQNIPETRSP*DA*LITQAMMGSFS 94
Query: 435 CPRYLLFPIIFGITFTSTSGFLLKVMARTT 346
CPRYLLFP G +TSGFLLKV A TT
Sbjct: 93 CPRYLLFPTSLGERLINTSGFLLKVKASTT 4
Score = 134 bits (287), Expect(2) = 1e-059
Identities = 67/134 (50%), Positives = 85/134 (63%)
Frame = +1 / +1
Query: 604 CHQSSFYIIEWCC*KGRTLSSPCFI*LVHESHISCF*CSSEGYRKV*SSLPNDQGVGSCR 783
C QSS Y EW *+G S + ++E HISC *C+ +GYRKV*SSLP ++G GSC
Sbjct: 271 CLQSSGYATEWRS*EGGAPGSCWNLGSLYEMHISCA*CTCQGYRKV*SSLPYNKGAGSCW 450
Query: 784 SSWLKNCETSITTAFTFVCKSNARKQRRAHQGGC*CFHLVLNSKCRVVQAXGKNLS*KY* 963
SWL +CE SIT A F C+ NARK RA QGG *C LV +S+ R++QA G+ ++
Sbjct: 451 YSWL*SCEASITAASAFGCEGNARK*CRARQGGH*CVRLVPDSESRLLQAVGQASCGEHX 630
Query: 964 SXXCCPEQSCD*LE 1005
S CC Q+ *LE
Sbjct: 631 SQCCCLAQNHC*LE 672
Score = 122 bits (261), Expect(2) = 6e-053
Identities = 67/116 (57%), Positives = 78/116 (67%)
Frame = +3 / +3
Query: 603 LSPKLVLYY*MVLLERENA*FPLFHLTCS*EPHFLFLMLE*RLQKGLKQPTQ*SRSWLLP 782
+ PKL L Y*M L R +A F L *+ HFL LM RLQKGLKQPT * RSWLL
Sbjct: 270 MPPKLGLCY*MAQLGRGSAWFLLEPWISL*DAHFLCLMHVSRLQKGLKQPTL**RSWLLL 449
Query: 783 VLLAQKL*NKHHNSFYLCVQKQCKKTTQSSPGRLLMFSFGA*LKMQSRTSXXKEFI 950
VLLA KL*+KHH+SF L + +QCKK QSSP R LM S GA*L++Q+ TS F+
Sbjct: 450 VLLALKL*SKHHSSFCLWL*RQCKKIMQSSPRRPLMCSSGA*LRVQTPTSSGTSFM 617
Score = 119 bits (255), Expect(2) = 3e-053
Identities = 67/141 (47%), Positives = 78/141 (55%)
Frame = -1 / -1
Query: 1031 QN*A*KXXPSNQSQLCSGQQXWLQYFQDKFFPXACTTLHFELSTK*KHQQPPW*ALRCFL 852
Q+ A + S+Q C+ QQ WL + P AC +L E T+ HQ PPW AL FL
Sbjct: 698 QSLAWERASSSQQ*FCARQQHWL*CSPHEACPTACRSLDSESGTRRTHQWPPWRALHYFL 519
Query: 851 ALLLHTKVKAVVMLVSQFLSQEDRQEPTP*SLGRLLQTFL*PSLEH*KQEMWLS*TSQMK 672
AL K +A VML SQ SQE +QEP P GRLLQTFL*P H* QEM +S*
Sbjct: 518 ALPSQPKAEAAVMLASQL*SQEYQQEPAPLL*GRLLQTFL*P*HVH*AQEMCIS*RDPRF 339
Query: 671 QGELSVLPF*QHHSII*NELW 609
Q E P * HS+ * ELW
Sbjct: 338 QQEPGAPPS*LRHSVA*PELW 276
Score = 116 bits (248), Expect(2) = 1e-059
Identities = 53/88 (60%), Positives = 64/88 (72%)
Frame = +1 / +1
Query: 349 CSCHDFKKKA*CTGKCYAKDNGKQ*ISGTGKASHHCLGYCSGLSR*PSVWHVLLGSFSIS 528
C+C DFKK+A C K +G+Q*IS TGKASHHCLGY SG+SR PS+ +VLL SF IS
Sbjct: 7 CACLDFKKEARCINKPLP*TSGEQ*ISWTGKASHHCLGY*SGISRRPSLGNVLLVSFPIS 186
Query: 529 HIMCEVKWESPCKRFGFAVA*KNFVCHQ 612
H MC+VKWES +R FA+A + FV Q
Sbjct: 187 HSMCKVKWESSVQRPRFAIAREVFVYPQ 270
Score = 110 bits (235), Expect(2) = 2e-066
Identities = 53/89 (59%), Positives = 58/89 (65%)
Frame = -1 / -1
Query: 611 W*QTKFFQATAKPNLLQGDSHLTSHIMWEIENEPSKTCQTLGHLERPEQ*PRQ*WEAFPV 432
W TK +A AK L DSHLT HI+WEI NE SKT LG LE P+ *PRQ*WEAFPV
Sbjct: 269 WG*TKTSRAIAKRGLWTEDSHLTLHILWEIGNETSKTFPRLGRLEMPD**PRQ*WEAFPV 90
Query: 431 PDIYCFPLSLA*HLPVHQAFFLKSWQEQQ 345
DIYC PL L +H A FLKS Q Q+
Sbjct: 89 QDIYCSPLV*GRGLLIHLASFLKSRQAQR 3
Score = 109 bits (233), Expect(2) = 3e-053
Identities = 54/89 (60%), Positives = 61/89 (68%)
Frame = -2 / -2
Query: 610 GDRQNSFKQLQNQISCKGIPT*LRT*CGK*RMSPAKHARH*VTLRGLSNNPDNDGKLFLS 431
G RQ +QLQN++S IPT*L T CGK* M PAKH+R *V LR L NNP NDGKLFLS
Sbjct: 268 GGRQKPLEQLQNEVSGLRIPT*LCTYCGK*GMRPAKHSRD*VALRCLINNPGNDGKLFLS 89
Query: 430 QIFIVSHYLWHNIYQYIRLSS*SHGKNNK 344
+IF V H Y YI L S*S GK+N+
Sbjct: 88 KIFTVPH*FRGEAY*YIWLPS*SQGKHNE 2
Score = 105 bits (225), Expect(2) = 6e-053
Identities = 48/77 (62%), Positives = 53/77 (68%)
Frame = +3 / +3
Query: 381 MYW*MLCQR*WETINIWDRKSFPSLSGLLLRPLKVT*CLACFAGLILYFPHYVRSQVGIP 560
MY * *W T+NI DRKSFPSL GLL+R LK T* CFAGLI YFP YV+SQVGI
Sbjct: 39 MY**ASPLN*WGTVNILDRKSFPSLPGLLIRHLKAT*SRECFAGLIPYFPQYVQSQVGIL 218
Query: 561 LQEIWFCSCLKEFCLSP 611
E FC+C + FCL P
Sbjct: 219 SPETSFCNCSRGFCLPP 269
>gb|BG344569.1|BG344569 HVSMEg0009K15f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0009K15f, mRNA sequence
Length = 815
Score = 233 bits (503), Expect(2) = 7e-099
Identities = 96/135 (71%), Positives = 113/135 (83%)
Frame = +2 / +3
Query: 602 SVTKARSILLNGAVRKGERLVPPVSFDLFMRATFPVSNARVKATERFEAAYPMIKELALA 781
+ +KAR++LLNGAVRKGERLVP + DLFMR TFPV NARVKATERFEAAYP+IKELAL
Sbjct: 222 NASKARAMLLNGAVRKGERLVPAGTLDLFMRCTFPVPNARVKATERFEAAYPIIKELALV 401
Query: 782 GPPGSKTVKQASQQLLPLCAKAMQENNAELTREAVDVFIWCLTQNAESYKXXERIYLENI 961
G PGSK VKQASQQLLPL KAMQENNAEL +EA DVF+WCLTQ+ +SYK ++++ ENI
Sbjct: 402 GTPGSKAVKQASQQLLPLAVKAMQENNAELAKEATDVFVWCLTQSPDSYKQWDKLHAENI 581
Query: 962 EAXXAVLSKVVIDWR 1006
+A AVL K+ DW+
Sbjct: 582 KASVAVLRKITADWK 626
Score = 183 bits (395), Expect(2) = 4e-079
Identities = 83/122 (68%), Positives = 93/122 (76%)
Frame = -3 / -2
Query: 975 AXXASIFSR*ILSXCLYDSAF*VKHQMKTSTASLVSSALFSCIAFAHKGKSCCDACFTVF 796
A A +FS * LS CL +S *V+HQ TS ASL SSALFSCIAF KG+SCCDACFT
Sbjct: 595 ATLALMFSA*SLSHCL*ESGL*VRHQTNTSVASLASSALFSCIAFTAKGRSCCDACFTAL 416
Query: 795 EPGGPARANSLIIG*AASNLSVAFTRALETGNVALMNKSNETGGTKRSPFLTAPFNNIER 616
EPG P RA+S IIG*AASNLSVA TRAL TGNV L+ +S GT+RSPFLTAPF++I R
Sbjct: 415 EPGVPTRASSFIIG*AASNLSVALTRALGTGNVHLIKRSKVPAGTRRSPFLTAPFSSIAR 236
Query: 615 AL 610
AL
Sbjct: 235 AL 230
Score = 175 bits (377), Expect(2) = 6e-067
Identities = 77/146 (52%), Positives = 101/146 (69%)
Frame = -2 / -1
Query: 1045 CLESFRTELRRXNPPINHNFAQDSXXGFNIFKINSFXXLVRLCILS*APNENINSLPGEL 866
C +SFR L R P++ +FAQDS GF++ ++ LV + LS AP+E+I+ L GEL
Sbjct: 665 CFKSFRV*LGRERLPVSSDFAQDSNTGFDVLRMKLVPLLVGVWTLSQAPDEHISGLLGEL 486
Query: 865 CVVFLHCFCTQR*KLL*CLFHSF*ARRTGKSQLLDHWVGCFKPFCSLHSSIRNRKCGSHE 686
C++FLHC +QR KLL*CL HSF AR T KSQLL + VGCFKPFCSL + IR+RKC SH+
Sbjct: 485 CIIFLHCLHSQRQKLL*CLLHSFRARSTNKSQLLYYRVGCFKPFCSLDTCIRHRKCASHK 306
Query: 685 QVK*NRGN*AFSLSNSTIQ*YRTSFG 608
+++ + N A L N IQ*+ SFG
Sbjct: 305 EIQGSSRNQALPLPNCAIQ*HSPSFG 228
Score = 148 bits (318), Expect(2) = 7e-099
Identities = 59/75 (78%), Positives = 67/75 (89%)
Frame = +2 / +3
Query: 392 NVMPKIMGNNKYLGQEKLPIIVWVIAQASQGDLVSGMFCWAHSLFPTLCAKSSGNPLARD 571
++ PK++GN+KYLGQEKLPII WVI QASQGDLVSGMFCW+HSLFPT+CAKSSGNP +RD
Sbjct: 3 SLSPKLVGNSKYLGQEKLPIIAWVINQASQGDLVSGMFCWSHSLFPTVCAKSSGNPQSRD 182
Query: 572 LVLQLLERILSVTKA 616
LVLQLLER LS A
Sbjct: 183 LVLQLLERFLSTPNA 227
Score = 138 bits (295), Expect(2) = 4e-058
Identities = 72/148 (48%), Positives = 91/148 (61%)
Frame = +1 / +2
Query: 604 CHQSSFYIIEWCC*KGRTLSSPCFI*LVHESHISCF*CSSEGYRKV*SSLPNDQGVGSCR 783
C QSS Y EW *+G S + ++E HISC *C+ +GYRKV*SSLP ++G GSC
Sbjct: 224 CLQSSGYATEWRS*EGGAPGSCWNLGSLYEMHISCA*CTCQGYRKV*SSLPYNKGAGSCW 403
Query: 784 SSWLKNCETSITTAFTFVCKSNARKQRRAHQGGC*CFHLVLNSKCRVVQAXGKNLS*KY* 963
SWL +CE SIT A F C+ NARK RA QGG *C LV +S+ R++QA G+ ++
Sbjct: 404 YSWL*SCEASITAASAFGCEGNARK*CRARQGGH*CVRLVPDSESRLLQAVGQASCGEHQ 583
Query: 964 SXXCCPEQSCD*LEGXXF*AQF*SSQGN 1047
S CC Q+ *LE A+ *SS N
Sbjct: 584 SQCCCLAQNHC*LEDALSQAKL*SS*SN 667
Score = 132 bits (282), Expect(2) = 4e-079
Identities = 57/72 (79%), Positives = 61/72 (84%)
Frame = -3 / -2
Query: 615 ALVTDKILSSNCKTKSLARGFPLDFAHNVGNRE*AQQNMPDTRSP*EA*AITQTMMGSFS 436
AL DK LSSNCKT+SL GFPLDFAH VGNRE* QQN+P+TRSP*+A* ITQ MMGSFS
Sbjct: 226 ALGVDKNLSSNCKTRSLD*GFPLDFAHTVGNRE*DQQNIPETRSP*DA*LITQAMMGSFS 47
Query: 435 CPRYLLFPIIFG 400
CPRYLLFP FG
Sbjct: 46 CPRYLLFPTSFG 11
Score = 124 bits (266), Expect(2) = 3e-051
Identities = 71/146 (48%), Positives = 82/146 (56%)
Frame = -1 / -3
Query: 1046 LP*ELQN*A*KXXPSNQSQLCSGQQXWLQYFQDKFFPXACTTLHFELSTK*KHQQPPW*A 867
L *ELQ+ A + S+Q C+ QQ WL + P AC +L E T+ HQ PPW A
Sbjct: 666 LL*ELQSLAWERASSSQQ*FCARQQHWL*CSPHEACPTACRSLDSESGTRRTHQWPPWRA 487
Query: 866 LRCFLALLLHTKVKAVVMLVSQFLSQEDRQEPTP*SLGRLLQTFL*PSLEH*KQEMWLS* 687
L FLAL K +A VML SQ SQE +QEP P GRLLQTFL*P H* QEM +S*
Sbjct: 486 LHYFLALPSQPKAEAAVMLASQL*SQEYQQEPAPLL*GRLLQTFL*P*HVH*AQEMCIS* 307
Query: 686 TSQMKQGELSVLPF*QHHSII*NELW 609
Q E P * HS+ * ELW
Sbjct: 306 RDPRFQQEPGAPPS*LRHSVA*PELW 229
Score = 122 bits (261), Expect(2) = 7e-051
Identities = 67/116 (57%), Positives = 78/116 (67%)
Frame = +3 / +1
Query: 603 LSPKLVLYY*MVLLERENA*FPLFHLTCS*EPHFLFLMLE*RLQKGLKQPTQ*SRSWLLP 782
+ PKL L Y*M L R +A F L *+ HFL LM RLQKGLKQPT * RSWLL
Sbjct: 223 MPPKLGLCY*MAQLGRGSAWFLLEPWISL*DAHFLCLMHVSRLQKGLKQPTL**RSWLLL 402
Query: 783 VLLAQKL*NKHHNSFYLCVQKQCKKTTQSSPGRLLMFSFGA*LKMQSRTSXXKEFI 950
VLLA KL*+KHH+SF L + +QCKK QSSP R LM S GA*L++Q+ TS F+
Sbjct: 403 VLLALKL*SKHHSSFCLWL*RQCKKIMQSSPRRPLMCSSGA*LRVQTPTSSGTSFM 570
Score = 107 bits (229), Expect(2) = 4e-058
Identities = 46/70 (65%), Positives = 51/70 (72%)
Frame = +3 / +1
Query: 402 QR*WETINIWDRKSFPSLSGLLLRPLKVT*CLACFAGLILYFPHYVRSQVGIPLQEIWFC 581
Q *W T+NI DRKSFPSL GLL+R LK T* CFAGLI YFP YV+SQVGI E FC
Sbjct: 13 QN*WGTVNILDRKSFPSLPGLLIRHLKAT*SRECFAGLIPYFPQYVQSQVGILSPETSFC 192
Query: 582 SCLKEFCLSP 611
+C + FCL P
Sbjct: 193 NCSRGFCLPP 222
Score = 99.6 bits (211), Expect(2) = 6e-067
Identities = 45/70 (64%), Positives = 48/70 (68%)
Frame = -1 / -3
Query: 611 W*QTKFFQATAKPNLLQGDSHLTSHIMWEIENEPSKTCQTLGHLERPEQ*PRQ*WEAFPV 432
W TK +A AK L DSHLT HI+WEI NE SKT LG LE P+ *PRQ*WEAFPV
Sbjct: 222 WG*TKTSRAIAKRGLWTEDSHLTLHILWEIGNETSKTFPRLGRLEMPD**PRQ*WEAFPV 43
Query: 431 PDIYCFPLSL 402
DIYC PL L
Sbjct: 42 QDIYCSPLVL 13
Score = 99.1 bits (210), Expect(2) = 7e-051
Identities = 45/70 (64%), Positives = 54/70 (77%)
Frame = +1 / +2
Query: 403 KDNGKQ*ISGTGKASHHCLGYCSGLSR*PSVWHVLLGSFSISHIMCEVKWESPCKRFGFA 582
K +G+Q*IS TGKASHHCLGY SG+SR PS+ +VLL SF ISH MC+VKWES +R FA
Sbjct: 14 KTSGEQ*ISWTGKASHHCLGY*SGISRRPSLGNVLLVSFPISHSMCKVKWESSVQRPRFA 193
Query: 583 VA*KNFVCHQ 612
+A + FV Q
Sbjct: 194 IAREVFVYPQ 223
Score = 98.2 bits (208), Expect(2) = 3e-051
Identities = 45/70 (64%), Positives = 50/70 (71%)
Frame = -2 / -1
Query: 610 GDRQNSFKQLQNQISCKGIPT*LRT*CGK*RMSPAKHARH*VTLRGLSNNPDNDGKLFLS 431
G RQ +QLQN++S IPT*L T CGK* M PAKH+R *V LR L NNP NDGKLFLS
Sbjct: 221 GGRQKPLEQLQNEVSGLRIPT*LCTYCGK*GMRPAKHSRD*VALRCLINNPGNDGKLFLS 42
Query: 430 QIFIVSHYLW 401
+IF V H W
Sbjct: 41 KIFTVPH*FW 12
>gb|BF256250.2|BF256250 HVSMEf0009E08f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEf0009E08f, mRNA sequence
Length = 768
Score = 233 bits (503), Expect(2) = 3e-093
Identities = 96/135 (71%), Positives = 113/135 (83%)
Frame = +2 / +1
Query: 602 SVTKARSILLNGAVRKGERLVPPVSFDLFMRATFPVSNARVKATERFEAAYPMIKELALA 781
+ +KAR++LLNGAVRKGERLVP + DLFMR TFPV NARVKATERFEAAYP+IKELAL
Sbjct: 184 NASKARAMLLNGAVRKGERLVPAGTLDLFMRCTFPVPNARVKATERFEAAYPIIKELALV 363
Query: 782 GPPGSKTVKQASQQLLPLCAKAMQENNAELTREAVDVFIWCLTQNAESYKXXERIYLENI 961
G PGSK VKQASQQLLPL KAMQENNAEL +EA DVF+WCLTQ+ +SYK ++++ ENI
Sbjct: 364 GTPGSKAVKQASQQLLPLAVKAMQENNAELAKEATDVFVWCLTQSPDSYKQWDKLHAENI 543
Query: 962 EAXXAVLSKVVIDWR 1006
+A AVL K+ DW+
Sbjct: 544 KASVAVLRKITADWK 588
Score = 183 bits (395), Expect(2) = 2e-073
Identities = 83/122 (68%), Positives = 93/122 (76%)
Frame = -3 / -2
Query: 975 AXXASIFSR*ILSXCLYDSAF*VKHQMKTSTASLVSSALFSCIAFAHKGKSCCDACFTVF 796
A A +FS * LS CL +S *V+HQ TS ASL SSALFSCIAF KG+SCCDACFT
Sbjct: 557 ATLALMFSA*SLSHCL*ESGL*VRHQTNTSVASLASSALFSCIAFTAKGRSCCDACFTAL 378
Query: 795 EPGGPARANSLIIG*AASNLSVAFTRALETGNVALMNKSNETGGTKRSPFLTAPFNNIER 616
EPG P RA+S IIG*AASNLSVA TRAL TGNV L+ +S GT+RSPFLTAPF++I R
Sbjct: 377 EPGVPTRASSFIIG*AASNLSVALTRALGTGNVHLIKRSKVPAGTRRSPFLTAPFSSIAR 198
Query: 615 AL 610
AL
Sbjct: 197 AL 192
Score = 175 bits (376), Expect(2) = 1e-062
Identities = 77/146 (52%), Positives = 101/146 (69%)
Frame = -2 / -1
Query: 1045 CLESFRTELRRXNPPINHNFAQDSXXGFNIFKINSFXXLVRLCILS*APNENINSLPGEL 866
C +SFR L R P++ +FAQDS GF++ ++ LV + LS AP+E+I+ L GEL
Sbjct: 627 CXKSFRV*LGRERLPVSSDFAQDSNTGFDVLRMKLVPLLVGVWTLSQAPDEHISGLLGEL 448
Query: 865 CVVFLHCFCTQR*KLL*CLFHSF*ARRTGKSQLLDHWVGCFKPFCSLHSSIRNRKCGSHE 686
C++FLHC +QR KLL*CL HSF AR T KSQLL + VGCFKPFCSL + IR+RKC SH+
Sbjct: 447 CIIFLHCLHSQRQKLL*CLLHSFRARSTNKSQLLYYRVGCFKPFCSLDTCIRHRKCASHK 268
Query: 685 QVK*NRGN*AFSLSNSTIQ*YRTSFG 608
+++ + N A L N IQ*+ SFG
Sbjct: 267 EIQGSSRNQALPLPNCAIQ*HSPSFG 190
Score = 139 bits (298), Expect(2) = 3e-054
Identities = 72/148 (48%), Positives = 91/148 (61%)
Frame = +1 / +3
Query: 604 CHQSSFYIIEWCC*KGRTLSSPCFI*LVHESHISCF*CSSEGYRKV*SSLPNDQGVGSCR 783
C QSS Y EW *+G S + ++E HISC *C+ +GYRKV*SSLP ++G GSC
Sbjct: 186 CLQSSGYATEWRS*EGGAPGSCWNLGSLYEMHISCA*CTCQGYRKV*SSLPYNKGAGSCW 365
Query: 784 SSWLKNCETSITTAFTFVCKSNARKQRRAHQGGC*CFHLVLNSKCRVVQAXGKNLS*KY* 963
SWL +CE SIT A F C+ NARK RA QGG *C LV +S+ R++QA G+ ++
Sbjct: 366 YSWL*SCEASITAASAFGCEGNARK*CRARQGGH*CVRLVPDSESRLLQAVGQASCGEHQ 545
Query: 964 SXXCCPEQSCD*LEGXXF*AQF*SSQGN 1047
S CC Q+ *LE A+ *SS N
Sbjct: 546 SQCCCLAQNHC*LEDALSQAKL*SSXSN 629
Score = 129 bits (277), Expect(2) = 3e-093
Identities = 53/63 (84%), Positives = 56/63 (88%)
Frame = +2 / +1
Query: 428 LGQEKLPIIVWVIAQASQGDLVSGMFCWAHSLFPTLCAKSSGNPLARDLVLQLLERILSV 607
LGQEKLPII WVI QASQGDLVSGMFCW+HSLFPT+CAKSSGNP +RDLVLQLLER LS
Sbjct: 1 LGQEKLPIIAWVINQASQGDLVSGMFCWSHSLFPTVCAKSSGNPQSRDLVLQLLERFLST 180
Query: 608 TKA 616
A
Sbjct: 181 PNA 189
Score = 124 bits (266), Expect(2) = 9e-047
Identities = 71/146 (48%), Positives = 82/146 (56%)
Frame = -1 / -3
Query: 1046 LP*ELQN*A*KXXPSNQSQLCSGQQXWLQYFQDKFFPXACTTLHFELSTK*KHQQPPW*A 867
L *ELQ+ A + S+Q C+ QQ WL + P AC +L E T+ HQ PPW A
Sbjct: 628 LL*ELQSLAWERASSSQQ*FCARQQHWL*CSPHEACPTACRSLDSESGTRRTHQWPPWRA 449
Query: 866 LRCFLALLLHTKVKAVVMLVSQFLSQEDRQEPTP*SLGRLLQTFL*PSLEH*KQEMWLS* 687
L FLAL K +A VML SQ SQE +QEP P GRLLQTFL*P H* QEM +S*
Sbjct: 448 LHYFLALPSQPKAEAAVMLASQL*SQEYQQEPAPLL*GRLLQTFL*P*HVH*AQEMCIS* 269
Query: 686 TSQMKQGELSVLPF*QHHSII*NELW 609
Q E P * HS+ * ELW
Sbjct: 268 RDPRFQQEPGAPPS*LRHSVA*PELW 191
Score = 122 bits (261), Expect(2) = 1e-047
Identities = 67/116 (57%), Positives = 78/116 (67%)
Frame = +3 / +2
Query: 603 LSPKLVLYY*MVLLERENA*FPLFHLTCS*EPHFLFLMLE*RLQKGLKQPTQ*SRSWLLP 782
+ PKL L Y*M L R +A F L *+ HFL LM RLQKGLKQPT * RSWLL
Sbjct: 185 MPPKLGLCY*MAQLGRGSAWFLLEPWISL*DAHFLCLMHVSRLQKGLKQPTL**RSWLLL 364
Query: 783 VLLAQKL*NKHHNSFYLCVQKQCKKTTQSSPGRLLMFSFGA*LKMQSRTSXXKEFI 950
VLLA KL*+KHH+SF L + +QCKK QSSP R LM S GA*L++Q+ TS F+
Sbjct: 365 VLLALKL*SKHHSSFCLWL*RQCKKIMQSSPRRPLMCSSGA*LRVQTPTSSGTSFM 532
Score = 112 bits (240), Expect(2) = 2e-073
Identities = 49/62 (79%), Positives = 53/62 (85%)
Frame = -3 / -2
Query: 615 ALVTDKILSSNCKTKSLARGFPLDFAHNVGNRE*AQQNMPDTRSP*EA*AITQTMMGSFS 436
AL DK LSSNCKT+SL GFPLDFAH VGNRE* QQN+P+TRSP*+A* ITQ MMGSFS
Sbjct: 188 ALGVDKNLSSNCKTRSLD*GFPLDFAHTVGNRE*DQQNIPETRSP*DA*LITQAMMGSFS 9
Query: 435 CP 430
CP
Sbjct: 8 CP 3
Score = 93.6 bits (198), Expect(2) = 3e-054
Identities = 40/60 (66%), Positives = 44/60 (73%)
Frame = +3 / +2
Query: 432 DRKSFPSLSGLLLRPLKVT*CLACFAGLILYFPHYVRSQVGIPLQEIWFCSCLKEFCLSP 611
DRKSFPSL GLL+R LK T* CFAGLI YFP YV+SQVGI E FC+C + FCL P
Sbjct: 5 DRKSFPSLPGLLIRHLKAT*SRECFAGLIPYFPQYVQSQVGILSPETSFCNCSRGFCLPP 184
Score = 88.1 bits (186), Expect(2) = 1e-047
Identities = 39/60 (65%), Positives = 46/60 (76%)
Frame = +1 / +3
Query: 433 TGKASHHCLGYCSGLSR*PSVWHVLLGSFSISHIMCEVKWESPCKRFGFAVA*KNFVCHQ 612
TGKASHHCLGY SG+SR PS+ +VLL SF ISH MC+VKWES +R FA+A + FV Q
Sbjct: 6 TGKASHHCLGY*SGISRRPSLGNVLLVSFPISHSMCKVKWESSVQRPRFAIAREVFVYPQ 185
Score = 85.8 bits (181), Expect(2) = 1e-062
Identities = 40/61 (65%), Positives = 45/61 (73%)
Frame = -2 / -1
Query: 610 GDRQNSFKQLQNQISCKGIPT*LRT*CGK*RMSPAKHARH*VTLRGLSNNPDNDGKLFLS 431
G RQ +QLQN++S IPT*L T CGK* M PAKH+R *V LR L NNP NDGKLFLS
Sbjct: 183 GGRQKPLEQLQNEVSGLRIPT*LCTYCGK*GMRPAKHSRD*VALRCLINNPGNDGKLFLS 4
Query: 430 Q 428
+
Sbjct: 3 K 1
Score = 83.1 bits (175), Expect(2) = 9e-047
Identities = 38/60 (63%), Positives = 41/60 (68%)
Frame = -1 / -3
Query: 611 W*QTKFFQATAKPNLLQGDSHLTSHIMWEIENEPSKTCQTLGHLERPEQ*PRQ*WEAFPV 432
W TK +A AK L DSHLT HI+WEI NE SKT LG LE P+ *PRQ*WEAFPV
Sbjct: 184 WG*TKTSRAIAKRGLWTEDSHLTLHILWEIGNETSKTFPRLGRLEMPD**PRQ*WEAFPV 5
>gb|CA007884.1|CA007884 HU09E15r HU Hordeum vulgare subsp. vulgare cDNA clone HU09E15
5-PRIME, mRNA sequence
Length = 595
Score = 233 bits (504), Expect(2) = 5e-084
Identities = 97/135 (71%), Positives = 113/135 (83%)
Frame = +2 / +3
Query: 602 SVTKARSILLNGAVRKGERLVPPVSFDLFMRATFPVSNARVKATERFEAAYPMIKELALA 781
+ +KAR++LLNGAVRKGER+VP + DLFMR TFPV NARVKATERFEAAYP+IKELAL
Sbjct: 159 NASKARAMLLNGAVRKGERVVPAGTLDLFMRCTFPVPNARVKATERFEAAYPIIKELALV 338
Query: 782 GPPGSKTVKQASQQLLPLCAKAMQENNAELTREAVDVFIWCLTQNAESYKXXERIYLENI 961
G PGSK VKQASQQLLPL KAMQENNAEL +EA DVFIWCLTQ+ ESYK ++++ ENI
Sbjct: 339 GTPGSKAVKQASQQLLPLAVKAMQENNAELAKEATDVFIWCLTQSPESYKQWDKLHAENI 518
Query: 962 EAXXAVLSKVVIDWR 1006
+A AVL K+ DW+
Sbjct: 519 KASVAVLRKITADWK 563
Score = 191 bits (411), Expect(2) = 2e-066
Identities = 87/122 (71%), Positives = 94/122 (77%)
Frame = -3 / -1
Query: 975 AXXASIFSR*ILSXCLYDSAF*VKHQMKTSTASLVSSALFSCIAFAHKGKSCCDACFTVF 796
A A IFS * LS CL DS *V+HQM TS ASL SSALFSCIAF KG+SCCDACFT
Sbjct: 532 ATLALIFSA*SLSHCL*DSGL*VRHQMNTSVASLASSALFSCIAFTAKGRSCCDACFTAL 353
Query: 795 EPGGPARANSLIIG*AASNLSVAFTRALETGNVALMNKSNETGGTKRSPFLTAPFNNIER 616
EPG P RA+S IIG*AASNLSVA TRAL TGNV L+ +SN GT RSPFLTAPF++I R
Sbjct: 352 EPGVPTRASSFIIG*AASNLSVALTRALGTGNVHLIKRSNVPAGTTRSPFLTAPFSSIAR 173
Query: 615 AL 610
AL
Sbjct: 172 AL 167
Score = 167 bits (359), Expect(2) = 3e-055
Identities = 75/143 (52%), Positives = 96/143 (67%)
Frame = -2 / -3
Query: 1036 SFRTELRRXNPPINHNFAQDSXXGFNIFKINSFXXLVRLCILS*APNENINSLPGELCVV 857
SFR +L P++ +F QDS F+I + LV L LS AP+E+I+ L GELC++
Sbjct: 593 SFRVQLG*ERLPVSSDFPQDSNTSFDILCMKLVPLLVGLWTLSQAPDEHISGLLGELCII 414
Query: 856 FLHCFCTQR*KLL*CLFHSF*ARRTGKSQLLDHWVGCFKPFCSLHSSIRNRKCGSHEQVK 677
FLHC +QR KLL*CL HSF AR T KSQLL +WVGCFKPFCSL + IR+ KC SH++++
Sbjct: 413 FLHCLHSQRQKLL*CLLHSFRARSTNKSQLLYYWVGCFKPFCSLDTCIRHGKCASHKEIQ 234
Query: 676 *NRGN*AFSLSNSTIQ*YRTSFG 608
+ N A L N IQ*+ SFG
Sbjct: 233 CSSRNHALPLPNCAIQ*HSPSFG 165
Score = 149 bits (319), Expect(2) = 2e-052
Identities = 76/145 (52%), Positives = 93/145 (64%)
Frame = +1 / +2
Query: 604 CHQSSFYIIEWCC*KGRTLSSPCFI*LVHESHISCF*CSSEGYRKV*SSLPNDQGVGSCR 783
C QSS Y EW *+G S I ++E HIS *C+ +GYRKV*SSLPN++G GSC
Sbjct: 161 CLQSSGYATEWRS*EGGARGSCWNIGSLYEMHISRA*CTCQGYRKV*SSLPNNKGAGSCW 340
Query: 784 SSWLKNCETSITTAFTFVCKSNARKQRRAHQGGC*CFHLVLNSKCRVVQAXGKNLS*KY* 963
SWL +CE SIT A F C+ NARK RA QGG *C HLV +S+ RV+QA G+ +Y
Sbjct: 341 YSWL*SCEASITAASAFGCEGNARK*CRARQGGH*CVHLVPDSESRVLQAVGQASCREYQ 520
Query: 964 SXXCCPEQSCD*LEGXXF*AQF*SS 1038
S CCPE++ *LE A+ *SS
Sbjct: 521 S*CCCPEENHC*LEDALTQAEL*SS 595
Score = 128 bits (274), Expect(2) = 6e-043
Identities = 69/116 (59%), Positives = 79/116 (68%)
Frame = +3 / +1
Query: 603 LSPKLVLYY*MVLLERENA*FPLFHLTCS*EPHFLFLMLE*RLQKGLKQPTQ*SRSWLLP 782
+ PKL L Y*M L R +A F L H *+ HF LM RLQKGLKQPTQ* RSWLL
Sbjct: 160 MPPKLGLCY*MAQLGRGSAWFLLEHWISL*DAHFPCLMHVSRLQKGLKQPTQ**RSWLLL 339
Query: 783 VLLAQKL*NKHHNSFYLCVQKQCKKTTQSSPGRLLMFSFGA*LKMQSRTSXXKEFI 950
VLLA KL*+KHH+SF L + +QCKK QSSP R LM S GA*L++QS TS F+
Sbjct: 340 VLLALKL*SKHHSSFCLWL*RQCKKIMQSSPRRPLMCSSGA*LRVQSPTSSGTSFM 507
Score = 127 bits (273), Expect(2) = 6e-043
Identities = 73/143 (51%), Positives = 82/143 (57%)
Frame = -1 / -2
Query: 1037 ELQN*A*KXXPSNQSQLCSGQQXWLQYFQDKFFPXACTTLHFELSTK*KHQQPPW*ALRC 858
ELQ+ A S+Q SGQQ L Y + P AC TL E T+* HQ PPW AL
Sbjct: 594 ELQSSAWVRASSSQQ*FSSGQQH*L*YSLHEACPTACRTLDSESGTR*THQWPPWRALHY 415
Query: 857 FLALLLHTKVKAVVMLVSQFLSQEDRQEPTP*SLGRLLQTFL*PSLEH*KQEMWLS*TSQ 678
FLAL K +A VML SQ SQE +QEP P LGRLLQTFL*P H* +EM +S*
Sbjct: 414 FLALPSQPKAEAAVMLASQL*SQEYQQEPAPLLLGRLLQTFL*P*HVH*AREMCIS*RDP 235
Query: 677 MKQGELSVLPF*QHHSII*NELW 609
M Q E P * HS+ * ELW
Sbjct: 234 MFQQEPRAPPS*LRHSVA*PELW 166
Score = 98.7 bits (209), Expect(2) = 5e-084
Identities = 41/51 (80%), Positives = 43/51 (84%)
Frame = +2 / +3
Query: 464 IAQASQGDLVSGMFCWAHSLFPTLCAKSSGNPLARDLVLQLLERILSVTKA 616
I QASQGDLVSGMFCW HSLFPT+CAKS GNP +RDLVLQLLER LS A
Sbjct: 12 INQASQGDLVSGMFCW*HSLFPTVCAKSGGNPQSRDLVLQLLERFLSTPNA 164
Score = 82.2 bits (173), Expect(2) = 2e-066
Identities = 37/51 (72%), Positives = 41/51 (80%)
Frame = -3 / -1
Query: 615 ALVTDKILSSNCKTKSLARGFPLDFAHNVGNRE*AQQNMPDTRSP*EA*AI 463
AL DK LSSNCKT+SL GFP DFAH VGNRE QQN+P+TRSP*+A* I
Sbjct: 163 ALGVDKNLSSNCKTRSLDWGFPPDFAHTVGNRECHQQNIPETRSP*DA*LI 11
Score = 78.0 bits (164), Expect(2) = 2e-052
Identities = 33/50 (66%), Positives = 38/50 (76%)
Frame = +3 / +1
Query: 462 LLLRPLKVT*CLACFAGLILYFPHYVRSQVGIPLQEIWFCSCLKEFCLSP 611
+L+R LKVT* CFAG I YFP YV+SQVGIP QEI C+CL+ FCL P
Sbjct: 10 VLIRHLKVT*SRECFAGDIPYFPQYVQSQVGIPSQEISSCNCLRGFCLPP 159
Score = 68.9 bits (144), Expect(2) = 3e-055
Identities = 34/49 (69%), Positives = 37/49 (75%)
Frame = -2 / -3
Query: 610 GDRQNSFKQLQNQISCKGIPT*LRT*CGK*RMSPAKHARH*VTLRGLSN 464
G RQ KQLQ++IS GIPT*L T CGK* MSPAKH+R *VTLR L N
Sbjct: 158 GGRQKPLKQLQDEIS*LGIPT*LCTYCGK*GMSPAKHSRD*VTLRCLIN 12
Score = 67.0 bits (140), Expect(2) = 6e-043
Identities = 29/48 (60%), Positives = 33/48 (68%)
Frame = -1 / -2
Query: 611 W*QTKFFQATAKPNLLQGDSHLTSHIMWEIENEPSKTCQTLGHLERPE 468
W TK QA A+ +LL GDSHLT HI+WEI N SKT LGHLE P+
Sbjct: 159 WG*TKTSQAIARRDLLTGDSHLTLHILWEIGNVTSKTFPRLGHLEMPD 16
Score = 66.6 bits (139), Expect(2) = 6e-043
Identities = 30/50 (60%), Positives = 38/50 (76%)
Frame = +1 / +2
Query: 463 YCSGLSR*PSVWHVLLGSFSISHIMCEVKWESPCKRFGFAVA*KNFVCHQ 612
Y SG+SR*PS+ +VLL +F ISH MC+V+WESP KR A+A*+ FV Q
Sbjct: 11 Y*SGISR*PSLGNVLLVTFPISHSMCKVRWESPVKRSRLAIA*EVFVYPQ 160
>gb|CB883381.1|CB883381 HQ02B06w HQ Hordeum vulgare subsp. vulgare cDNA clone HQ02B06
3-PRIME, mRNA sequence
Length = 578
Score = 188 bits (406), Expect(2) = 7e-075
Identities = 76/96 (79%), Positives = 84/96 (87%)
Frame = +2 / +2
Query: 5 ISSSYENQQDIQLMRFADYFGRAFVAVSASQFAWAKMFKESTVSKMVDIPLCHIPEAVIK 184
IS+SYENQ+ IQLMRFADYFGRAF VSA+QF WAKMFKE + KMVD+PL H+PE V K
Sbjct: 119 ISASYENQEGIQLMRFADYFGRAFANVSAAQFPWAKMFKELPMPKMVDVPLSHVPEPVCK 298
Query: 185 TASDWISQRSSDALGDFVLWCIDSIMSELSGPSAGP 292
TASDWISQRS DALG+FVLWCIDSIMSELSGP+ GP
Sbjct: 299 TASDWISQRSPDALGEFVLWCIDSIMSELSGPTVGP 406
Score = 144 bits (309), Expect(2) = 3e-058
Identities = 66/96 (68%), Positives = 70/96 (72%)
Frame = -3 / -3
Query: 291 GPADGPDNSDMMLSIHHKTKSPRASEDL*LIQSLAVLMTASGIWHSGMSTILDTVDSLNI 112
GP GPDNSDMMLSIHHKT SP AS DL LIQSLAVL T SG W +G STIL +SLNI
Sbjct: 405 GPTVGPDNSDMMLSIHHKTNSPNASGDLWLIQSLAVLQTGSGTWDNGTSTILGMGNSLNI 226
Query: 111 FAHANWDALTATNARPK*SANLMS*MSC*FSYDDEI 4
AH NW ALT NARPK*SA MS M FSY+ E+
Sbjct: 225 LAHGNWAALTFANARPK*SAKRMSWMPSWFSYEAEM 118
Score = 138 bits (297), Expect(2) = 1e-050
Identities = 62/96 (64%), Positives = 74/96 (77%)
Frame = -2 / -2
Query: 292 RAS*WT*QFRHDAIYTPQNKVSQGIRRSLTDPITRSLDDSLRNMAQWDVNHLRHC*FLEH 113
R++ WT*QFRHDAIYTPQNK+SQ IRRSL DPIT SL + LRNM Q +NHL H FLEH
Sbjct: 406 RSNSWT*QFRHDAIYTPQNKLSQCIRRSLADPITCSLANWLRNMGQRYINHLGHGQFLEH 227
Query: 112 LCPCKLGCAYSYKCPAKVISKPHELNVLLILV**RD 5
L P +LGCA+ K PAKV+ + HEL+ LL+L+ RD
Sbjct: 226 LGPRELGCAHVCKRPAKVVREAHELDALLVLIRGRD 119
Score = 112 bits (240), Expect(2) = 7e-075
Identities = 45/56 (80%), Positives = 54/56 (96%)
Frame = +2 / +2
Query: 287 GPKGSKKVAQQSPRAQVAIFVVLAMTLRRKPDVLVNVMPKIMGNNKYLGQEKLPII 454
GPKGSKKV QQ+P+AQVAIFVVLA+TLRRKPDVL+++ PK++GN+KYLGQEKLPII
Sbjct: 407 GPKGSKKVVQQTPKAQVAIFVVLALTLRRKPDVLISLSPKLVGNSKYLGQEKLPII 574
Score = 106 bits (226), Expect(2) = 2e-039
Identities = 52/94 (55%), Positives = 62/94 (65%)
Frame = -1 / -1
Query: 287 QLMDLTIQT*CYLYTTKQSLPGHQKIFD*SNHSQS**QPQEYGTVGCQPS*TLLIP*TSL 108
Q +DLTI T*CYLYTTKQ+LP HQ+I *SNH QS QE+GT QPS IP*TS
Sbjct: 401 QQLDLTIPT*CYLYTTKQTLPMHQEISG*SNHLQSCKLAQEHGTTVHQPSWAWAIP*TSW 222
Query: 107 PMQIGMRLQLQMPGQSNQQTS*VECPVDSRMMTR 6
P G+R +LQ PGQS+ +++* CP S R
Sbjct: 221 PTGTGLRSRLQTPGQSSPRSA*AGCPPGSHTRPR 120
Score = 101 bits (216), Expect(2) = 3e-058
Identities = 42/56 (75%), Positives = 43/56 (76%)
Frame = -3 / -3
Query: 453 MMGSFSCPRYLLFPIIFGITFTSTSGFLLKVMARTTKIATWALGDCCATFFEPLGP 286
MMGSFSCPRYLLFP FG +TSGFLLKV A TT IATWA G C TFFEPLGP
Sbjct: 573 MMGSFSCPRYLLFPTSFGERLINTSGFLLKVKASTTNIATWAFGVC*TTFFEPLGP 406
Score = 98.2 bits (208), Expect(2) = 5e-042
Identities = 41/66 (62%), Positives = 48/66 (72%)
Frame = +3 / +3
Query: 111 RCSRNQQCLRWLTSHCAIFLRLSSRLRVIGSVKDLLMPWETLFCGV*IASCLNCQVHQLA 290
RCSRN C RWL C +FL +RL+VIGS +DLLM WE+LFCGV*IASC NCQV L
Sbjct: 225 RCSRNCPCPRWLMYRCPMFLSQFARLQVIGSARDLLMHWESLFCGV*IASCRNCQVQLLD 404
Query: 291 LRVQRR 308
L ++ R
Sbjct: 405 LDLRAR 422
Score = 93.6 bits (198), Expect(2) = 5e-042
Identities = 36/58 (62%), Positives = 44/58 (75%)
Frame = +1 / +1
Query: 283 SWP*GFKEGCTTVSKGPGCNLCCSCHDFKKKA*CTGKCYAKDNGKQ*ISGTGKASHHC 456
+W *G +EGC+T SK PGCN+ C+C DFKK+A C K K +G+Q*IS TGKASHHC
Sbjct: 403 TWT*GLEEGCSTNSKSPGCNIRCACLDFKKEARCINKPLPKTSGEQ*ISWTGKASHHC 576
Score = 89.0 bits (188), Expect(2) = 9e-022
Identities = 40/78 (51%), Positives = 51/78 (65%)
Frame = +1 / +1
Query: 7 LVIIRESTGHSTHEVC*LLWPGICSCKRIPICMGKDVQGINSV*DG*HPTVPYS*GCHQD 186
L ++ E GH H + LLWPG+C +R P+ +G+DVQGI DG* VP S* QD
Sbjct: 121 LGLV*EPGGHPAHALRGLLWPGVCKRERSPVPVGQDVQGIAHAQDG*CTVVPCS*ASLQD 300
Query: 187 CE*LDQSKIF*CPGRLCF 240
C+*LDQ +I *C GR+CF
Sbjct: 301 CK*LDQPEIS*CIGRVCF 354
Score = 81.7 bits (172), Expect(2) = 1e-050
Identities = 39/64 (60%), Positives = 44/64 (68%)
Frame = -1 / -1
Query: 458 RQ*WEAFPVPDIYCFPLSLA*HLPVHQAFFLKSWQEQQRLQPGPLETVVQPSLNP*GQLM 279
RQ*WEAFPV DIYC PL L L +H A FLKS Q Q+ LQPG LE V QPS +P* Q+
Sbjct: 578 RQ*WEAFPVQDIYCSPLVLGRGLLIHLASFLKSRQAQRILQPGLLEFVEQPSSSP*VQVQ 399
Query: 278 DLTI 267
L +
Sbjct: 398 QLDL 387
Score = 76.7 bits (161), Expect(2) = 2e-039
Identities = 35/56 (62%), Positives = 39/56 (69%)
Frame = -2 / -2
Query: 454 NDGKLFLSQIFIVSHYLWHNIYQYIRLSS*SHGKNNKDCNLGPWRLLCNLL*TLRA 287
NDGKLFLS+IF V H W Y YI L S*S GK+N+ CNLG W LL NLL LR+
Sbjct: 574 NDGKLFLSKIFTVPH*FWGEAY*YIWLPS*SQGKHNEYCNLGFWSLLNNLLRALRS 407
Score = 37.3 bits (75), Expect(2) = 9e-022
Identities = 17/25 (68%), Positives = 18/25 (72%)
Frame = +3 / +3
Query: 381 MYW*MLCQR*WETINIWDRKSFPSL 455
MY * Q *W T+NI DRKSFPSL
Sbjct: 501 MY**ASPQN*WGTVNILDRKSFPSL 575
>gb|CA025473.1|CA025473 HZ52E08r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ52E08
5-PRIME, mRNA sequence
Length = 433
Score = 195 bits (420), Expect = 4e-049
Identities = 79/111 (71%), Positives = 92/111 (82%)
Frame = +2 / +1
Query: 674 SFDLFMRATFPVSNARVKATERFEAAYPMIKELALAGPPGSKTVKQASQQLLPLCAKAMQ 853
+ DLFMR TFPV NARVKATERFEAAYP+IKELAL G PGSK VKQASQQLLPL KAMQ
Sbjct: 16 TLDLFMRCTFPVPNARVKATERFEAAYPIIKELALVGTPGSKAVKQASQQLLPLAVKAMQ 195
Query: 854 ENNAELTREAVDVFIWCLTQNAESYKXXERIYLENIEAXXAVLSKVVIDWR 1006
ENNAEL +EA DVF+WCLTQ+ +SYK ++++ ENI+A AVL K+ DW+
Sbjct: 196 ENNAELAKEATDVFVWCLTQSPDSYKQWDKLHAENIKASVAVLRKITADWK 348
Score = 160 bits (344), Expect = 1e-038
Identities = 67/123 (54%), Positives = 89/123 (72%)
Frame = -2 / -2
Query: 1045 CLESFRTELRRXNPPINHNFAQDSXXGFNIFKINSFXXLVRLCILS*APNENINSLPGEL 866
C +SFR L R P++ +FAQDS GF++ ++ LV + LS AP+E+I+ L GEL
Sbjct: 387 CFKSFRV*LGRERLPVSSDFAQDSNTGFDVLRMKLVPLLVGVWTLSQAPDEHISGLLGEL 208
Query: 865 CVVFLHCFCTQR*KLL*CLFHSF*ARRTGKSQLLDHWVGCFKPFCSLHSSIRNRKCGSHE 686
C++FLHC +QR KLL*CL HSF AR T KSQLL + VGCFKPFCSL + IR+RKC SH+
Sbjct: 207 CIIFLHCLHSQRQKLL*CLLHSFRARSTNKSQLLYYRVGCFKPFCSLDTCIRHRKCASHK 28
Query: 685 QVK 677
+++
Sbjct: 27 EIQ 19
Score = 149 bits (319), Expect = 4e-035
Identities = 68/99 (68%), Positives = 75/99 (75%)
Frame = -3 / -3
Query: 975 AXXASIFSR*ILSXCLYDSAF*VKHQMKTSTASLVSSALFSCIAFAHKGKSCCDACFTVF 796
A A +FS * LS CL +S *V+HQ TS ASL SSALFSCIAF KG+SCCDACFT
Sbjct: 317 ATLALMFSA*SLSHCL*ESGL*VRHQTNTSVASLASSALFSCIAFTAKGRSCCDACFTAL 138
Query: 795 EPGGPARANSLIIG*AASNLSVAFTRALETGNVALMNKS 679
EPG P RA+S IIG*AASNLSVA TRAL TGNV L+ +S
Sbjct: 137 EPGVPTRASSFIIG*AASNLSVALTRALGTGNVHLIKRS 21
Score = 125 bits (267), Expect = 5e-028
Identities = 62/121 (51%), Positives = 79/121 (65%)
Frame = +1 / +3
Query: 685 VHESHISCF*CSSEGYRKV*SSLPNDQGVGSCRSSWLKNCETSITTAFTFVCKSNARKQR 864
++E HISC *C+ +GYRKV*SSLP ++G GSC SWL +CE SIT A F C+ NARK
Sbjct: 27 LYEMHISCA*CTCQGYRKV*SSLPYNKGAGSCWYSWL*SCEASITAASAFGCEGNARK*C 206
Query: 865 RAHQGGC*CFHLVLNSKCRVVQAXGKNLS*KY*SXXCCPEQSCD*LEGXXF*AQF*SSQG 1044
RA QGG *C LV +S+ R++QA G+ ++ S CC Q+ *LE A+ *SS
Sbjct: 207 RARQGGH*CVRLVPDSESRLLQAVGQASCGEHQSQCCCLAQNHC*LEDALSQAKL*SS*S 386
Query: 1045 N 1047
N
Sbjct: 387 N 389
Score = 109 bits (233), Expect = 3e-023
Identities = 61/120 (50%), Positives = 71/120 (59%)
Frame = -1 / -1
Query: 1046 LP*ELQN*A*KXXPSNQSQLCSGQQXWLQYFQDKFFPXACTTLHFELSTK*KHQQPPW*A 867
L *ELQ+ A + S+Q C+ QQ WL + P AC +L E T+ HQ PPW A
Sbjct: 388 LL*ELQSLAWERASSSQQ*FCARQQHWL*CSPHEACPTACRSLDSESGTRRTHQWPPWRA 209
Query: 866 LRCFLALLLHTKVKAVVMLVSQFLSQEDRQEPTP*SLGRLLQTFL*PSLEH*KQEMWLS* 687
L FLAL K +A VML SQ SQE +QEP P GRLLQTFL*P H* QEM +S*
Sbjct: 208 LHYFLALPSQPKAEAAVMLASQL*SQEYQQEPAPLL*GRLLQTFL*P*HVH*AQEMCIS* 29
Score = 109 bits (232), Expect = 4e-023
Identities = 55/87 (63%), Positives = 64/87 (73%)
Frame = +3 / +2
Query: 690 *EPHFLFLMLE*RLQKGLKQPTQ*SRSWLLPVLLAQKL*NKHHNSFYLCVQKQCKKTTQS 869
*+ HFL LM RLQKGLKQPT * RSWLL VLLA KL*+KHH+SF L + +QCKK QS
Sbjct: 32 *DAHFLCLMHVSRLQKGLKQPTL**RSWLLLVLLALKL*SKHHSSFCLWL*RQCKKIMQS 211
Query: 870 SPGRLLMFSFGA*LKMQSRTSXXKEFI 950
SP R LM S GA*L++Q+ TS F+
Sbjct: 212 SPRRPLMCSSGA*LRVQTPTSSGTSFM 292
>gb|BG343247.2|BG343247 HVSMEg0005D12f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0005D12f, mRNA sequence
Length = 974
Score = 179 bits (385), Expect = 3e-044
Identities = 80/110 (72%), Positives = 88/110 (80%)
Frame = +2 / +3
Query: 602 SVTKARSILLNGAVRKGERLVPPVSFDLFMRATFPVSNARVKATERFEAAYPMIKELALA 781
+ +KAR++LLNGAVRKGERLVP + DLFMR TFPV NARVKAT RFEAAYP+IKELAL
Sbjct: 330 NASKARAMLLNGAVRKGERLVPAGTLDLFMRCTFPVPNARVKATVRFEAAYPIIKELALV 509
Query: 782 GPPGSKTVKQASQQLLPLCAKAMQENNAELTREAVDVFIWCLTQNAESYK 931
G GSK VKQASQQLLPL AMQENNA L +EA DVFI CLT + YK
Sbjct: 510 GTLGSKAVKQASQQLLPLAVNAMQENNA*LAKEATDVFI*CLTHSPNLYK 659
Score = 165 bits (355), Expect = 4e-040
Identities = 74/108 (68%), Positives = 82/108 (75%)
Frame = -3 / -2
Query: 933 CLYDSAF*VKHQMKTSTASLVSSALFSCIAFAHKGKSCCDACFTVFEPGGPARANSLIIG 754
CL *V+H M TS ASL S ALFSCIAF KG+SCCDACFT EP P RANS IIG
Sbjct: 661 CL*RFGL*VRH*MNTSVASLASYALFSCIAFTAKGRSCCDACFTALEPRVPTRANSFIIG 482
Query: 753 *AASNLSVAFTRALETGNVALMNKSNETGGTKRSPFLTAPFNNIERAL 610
*AASNL+VA TRAL TGNV L+ +SN GT+RSPFLTAPF++I RAL
Sbjct: 481 *AASNLTVALTRALGTGNVHLIKRSNVPAGTRRSPFLTAPFSSIARAL 338
Score = 137 bits (293), Expect = 1e-031
Identities = 59/108 (54%), Positives = 78/108 (72%)
Frame = -2 / -1
Query: 931 LVRLCILS*APNENINSLPGELCVVFLHCFCTQR*KLL*CLFHSF*ARRTGKSQLLDHWV 752
LV + +S A +E+I+ L GELC++FLHC +QR KLL*CL HSF A+ T KSQLL +WV
Sbjct: 659 LVEVWTVSQALDEHISGLLGELCIIFLHCVHSQRQKLL*CLLHSFRAKSTNKSQLLYYWV 480
Query: 751 GCFKPFCSLHSSIRNRKCGSHEQVK*NRGN*AFSLSNSTIQ*YRTSFG 608
GCFKP+CSL + IR+ KC SH++++ + N A L N IQ*+ SFG
Sbjct: 479 GCFKPYCSLDTCIRHGKCASHKKIQCSSRNQALPLPNCAIQ*HSPSFG 336
Score = 121 bits (258), Expect = 9e-027
Identities = 60/110 (54%), Positives = 72/110 (65%)
Frame = +1 / +2
Query: 604 CHQSSFYIIEWCC*KGRTLSSPCFI*LVHESHISCF*CSSEGYRKV*SSLPNDQGVGSCR 783
C QSS Y EW *+G S I +E HIS *C+ +GY KV*SSLPN++GVGSC
Sbjct: 332 CLQSSGYATEWRS*EGGAPGSCWNIGSFYEMHISRA*CTCQGYSKV*SSLPNNKGVGSCW 511
Query: 784 SSWLKNCETSITTAFTFVCKSNARKQRRAHQGGC*CFHLVLNSKCRVVQA 933
SWL +CE SITTA F C+ NARK A QGG *C HLV +S+ + +QA
Sbjct: 512 YSWL*SCEASITTASAFGCERNARK*CIARQGGH*CVHLVPDSQSKPLQA 661
Score = 115 bits (245), Expect = 6e-025
Identities = 65/110 (59%), Positives = 72/110 (65%)
Frame = +3 / +1
Query: 603 LSPKLVLYY*MVLLERENA*FPLFHLTCS*EPHFLFLMLE*RLQKGLKQPTQ*SRSWLLP 782
+ PKL L Y*M L R +A F L H *+ HF LM RLQ GLKQPTQ* RSWLL
Sbjct: 331 MPPKLGLCY*MAQLGRGSAWFLLEHWIFL*DAHFPCLMHVSRLQ*GLKQPTQ**RSWLLL 510
Query: 783 VLLAQKL*NKHHNSFYLCVQKQCKKTTQSSPGRLLMFSFGA*LKMQSRTS 932
VLLA KL*+KHHNSF L + QCKK SSP R LM S A*L +Q+ TS
Sbjct: 511 VLLALKL*SKHHNSFCLWL*TQCKKIMHSSPRRPLMCSSSA*LTVQTSTS 660
Score = 113 bits (241), Expect = 2e-024
Identities = 60/111 (54%), Positives = 67/111 (60%)
Frame = -1 / -3
Query: 941 FPXACTTLHFELSTK*KHQQPPW*ALRCFLALLLHTKVKAVVMLVSQFLSQEDRQEPTP* 762
F AC L E T+* HQ PPW A+ FLAL K +AVVML SQ SQE +QEPTP
Sbjct: 669 FSTACRGLDCESGTR*THQWPPWRAMHYFLALRSQPKAEAVVMLASQL*SQEYQQEPTPL 490
Query: 761 SLGRLLQTFL*PSLEH*KQEMWLS*TSQMKQGELSVLPF*QHHSII*NELW 609
LGRLLQT L*P H* +EM +S* M Q E P * HS+ * ELW
Sbjct: 489 LLGRLLQTLL*P*HVH*AREMCIS*KDPMFQQEPGAPPS*LRHSVA*PELW 337
>gb|BG417572.2|BG417572 HVSMEk0018E04f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0018E04f, mRNA sequence
Length = 697
Score = 139 bits (299), Expect(2) = 9e-035
Identities = 60/75 (80%), Positives = 64/75 (85%)
Frame = +2 / +1
Query: 707 VSNARVKATERFEAAYPMIKELALAGPPGSKTVKQASQQLLPLCAKAMQENNAELTREAV 886
V NARVKAT RFEAAYP+IKELAL G GSK VKQASQQLLPL KAMQENNAEL +EA
Sbjct: 1 VPNARVKATVRFEAAYPIIKELALVGTLGSKAVKQASQQLLPLAVKAMQENNAELAKEAT 180
Query: 887 DVFIWCLTQNAESYK 931
DVFIWCLTQ+ +SYK
Sbjct: 181 DVFIWCLTQSPDSYK 225
Score = 126 bits (270), Expect(2) = 7e-032
Identities = 55/74 (74%), Positives = 59/74 (79%)
Frame = -3 / -3
Query: 933 CLYDSAF*VKHQMKTSTASLVSSALFSCIAFAHKGKSCCDACFTVFEPGGPARANSLIIG 754
CL +S *V+HQM TS ASL SSALFSCIAF KG+SCCDACFT EP P RANS IIG
Sbjct: 227 CL*ESGL*VRHQMNTSVASLASSALFSCIAFTAKGRSCCDACFTALEPRVPTRANSFIIG 48
Query: 753 *AASNLSVAFTRAL 712
*AASNL+VA TRAL
Sbjct: 47 *AASNLTVALTRAL 6
Score = 113 bits (242), Expect(2) = 7e-026
Identities = 47/75 (62%), Positives = 59/75 (78%)
Frame = -2 / -2
Query: 931 LVRLCILS*APNENINSLPGELCVVFLHCFCTQR*KLL*CLFHSF*ARRTGKSQLLDHWV 752
LV + LS AP+E+I+ L GELC++FLHC +QR KLL*CL HSF A+ T KSQLL +WV
Sbjct: 225 LVGVWTLSQAPDEHISGLLGELCIIFLHCLHSQRQKLL*CLLHSFRAKSTNKSQLLYYWV 46
Query: 751 GCFKPFCSLHSSIRN 707
GCFKP+CSL + IR+
Sbjct: 45 GCFKPYCSLDTCIRH 1
Score = 106 bits (227), Expect(2) = 2e-024
Identities = 47/74 (63%), Positives = 57/74 (77%)
Frame = +1 / +3
Query: 712 *CSSEGYRKV*SSLPNDQGVGSCRSSWLKNCETSITTAFTFVCKSNARKQRRAHQGGC*C 891
*C+ +GY KV*SSLPN++GVGSC SWL +CE SITTA F C+ NARK RA QGG *C
Sbjct: 6 *CTCQGYSKV*SSLPNNKGVGSCWYSWL*SCEASITTASAFGCEGNARK*CRARQGGH*C 185
Query: 892 FHLVLNSKCRVVQA 933
HLV +S+ R++QA
Sbjct: 186 VHLVPDSESRLLQA 227
Score = 31.3 bits (62), Expect(2) = 7e-032
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -2 / -3
Query: 1045 CLESFRTELRRXNPPINHNFAQDSXXGFNI 956
CL+SFR +L P++ +F +DS F+I
Sbjct: 323 CLKSFRVQLG*ERLPVSSDFPRDSNTSFDI 234
Score = 27.6 bits (54), Expect(2) = 9e-035
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +1 / +2
Query: 955 KY*SXXCCPEQSCD*LEGXXF*AQF*SSQGN 1047
+Y S CCPE++ *LE A+ *SS GN
Sbjct: 233 EYQS*CCCPEENHC*LEDALTQAEL*SS*GN 325
Score = 25.8 bits (50), Expect(2) = 2e-024
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +2 / +3
Query: 950 LENIEAXXAVLSKVVIDWR 1006
+ENI+A AV K+ DW+
Sbjct: 228 VENIKASVAVPRKITADWK 284
Score = 24.0 bits (46), Expect(2) = 7e-026
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = -1 / -2
Query: 1046 LP*ELQN*A*KXXPSNQSQLCSGQQXWLQY 957
LP*ELQ+ A S+Q SGQQ L Y
Sbjct: 324 LP*ELQSSAWVRASSSQQ*FSSGQQH*L*Y 235
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 473,045,255
Number of Sequences: 312970
Number of extensions: 7357846
Number of successful extensions: 34256
Number of sequences better than 1.0e-020: 11
length of database: 58,378,179
effective HSP length: 53
effective length of database: 41,790,769
effective search space used: 13331255311
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)