TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3754578.2.1
         (725 letters)

Database: Hordeum_nucl_with_EST.fasta 
           312,970 sequences; 175,134,539 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AV915078.1|AV915078  AV915078 K. Sato unpublished cDNA li...   118   3e-030
gb|AV915881.1|AV915881  AV915881 K. Sato unpublished cDNA li...   118   3e-030
gb|AV920212.1|AV920212  AV920212 K. Sato unpublished cDNA li...   118   4e-026

>gb|AV915078.1|AV915078 AV915078 K. Sato unpublished cDNA library, cv. Haruna Nijo
           germination shoots Hordeum vulgare subsp. vulgare cDNA
           clone bags9m07 5', mRNA sequence
          Length = 623

 Score =  118 bits (252), Expect(2) = 3e-030
 Identities = 41/49 (83%), Positives = 45/49 (91%)
 Frame = -3 / +3

                                                            
Query: 669 PVQYSHSWKFCQYGCLENYYTAHYQSPRQMLCLWDKLVRGQASCCNYR* 523
           PVQY HSWKFCQYGC++NY+TAHYQSPRQMLCLWDKL  G+A CCNYR*
Sbjct: 141 PVQYIHSWKFCQYGCVDNYFTAHYQSPRQMLCLWDKLSLGRAQCCNYR* 287




 Score = 33.1 bits (66), Expect(2) = 3e-030
 Identities = 11/15 (73%), Positives = 14/15 (93%)
 Frame = -3 / +3

                          
Query: 717 EDVSMGLWVEKFNST 673
           EDVSMG+WVE +N+T
Sbjct: 84  EDVSMGMWVEDYNTT 128



>gb|AV915881.1|AV915881 AV915881 K. Sato unpublished cDNA library, cv. Haruna Nijo
           germination shoots Hordeum vulgare subsp. vulgare cDNA
           clone bags16g24 5', mRNA sequence
          Length = 606

 Score =  118 bits (252), Expect(2) = 3e-030
 Identities = 41/49 (83%), Positives = 45/49 (91%)
 Frame = -3 / +3

                                                            
Query: 669 PVQYSHSWKFCQYGCLENYYTAHYQSPRQMLCLWDKLVRGQASCCNYR* 523
           PVQY HSWKFCQYGC++NY+TAHYQSPRQMLCLWDKL  G+A CCNYR*
Sbjct: 138 PVQYIHSWKFCQYGCVDNYFTAHYQSPRQMLCLWDKLSLGRAQCCNYR* 284




 Score = 33.1 bits (66), Expect(2) = 3e-030
 Identities = 11/15 (73%), Positives = 14/15 (93%)
 Frame = -3 / +3

                          
Query: 717 EDVSMGLWVEKFNST 673
           EDVSMG+WVE +N+T
Sbjct: 81  EDVSMGMWVEDYNTT 125



>gb|AV920212.1|AV920212 AV920212 K. Sato unpublished cDNA library, cv. Haruna Nijo
           germination shoots Hordeum vulgare subsp. vulgare cDNA
           clone bags9m07 3', mRNA sequence
          Length = 671

 Score =  118 bits (252), Expect = 4e-026
 Identities = 41/49 (83%), Positives = 45/49 (91%)
 Frame = -3 / -2

                                                            
Query: 669 PVQYSHSWKFCQYGCLENYYTAHYQSPRQMLCLWDKLVRGQASCCNYR* 523
           PVQY HSWKFCQYGC++NY+TAHYQSPRQMLCLWDKL  G+A CCNYR*
Sbjct: 667 PVQYIHSWKFCQYGCVDNYFTAHYQSPRQMLCLWDKLSLGRAQCCNYR* 521



  Database: Hordeum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:16 PM
  Number of letters in database: 175,134,539
  Number of sequences in database:  312,970
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 393,296,645
Number of Sequences: 312970
Number of extensions: 6763721
Number of successful extensions: 67491
Number of sequences better than 1.0e-020: 5
length of database: 58,378,179
effective HSP length: 51
effective length of database: 42,416,709
effective search space used: 8059174710
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)