TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3713074.2.1
(527 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU996805.1|BU996805 HM14N04r HM Hordeum vulgare subsp. v... 117 3e-026
gb|BM100617.2|BM100617 EBma01_SQ005_L23_R maternal, 4 DPA, ... 114 4e-025
gb|BU971142.1|BU971142 HB16L19r BC Hordeum vulgare subsp. v... 114 4e-025
gb|BG415995.2|BG415995 HVSMEk0009F13f Hordeum vulgare testa... 112 1e-024
gb|BJ473415.1|BJ473415 BJ473415 K. Sato unpublished cDNA li... 112 1e-024
gb|CA030113.1|CA030113 HX06C02r HX Hordeum vulgare subsp. v... 112 1e-024
gb|CB874722.1|CB874722 HX06C02w HX Hordeum vulgare subsp. v... 112 1e-024
gb|CB874756.1|CB874756 HX06D16w HX Hordeum vulgare subsp. v... 112 1e-024
gb|BJ451080.1|BJ451080 BJ451080 K. Sato unpublished cDNA li... 111 4e-024
gb|AV916245.1|AV916245 AV916245 K. Sato unpublished cDNA li... 107 4e-023
gb|BE215344.1|BE215344 HV_CEb0006I15f Hordeum vulgare seedl... 103 6e-022
>gb|BU996805.1|BU996805 HM14N04r HM Hordeum vulgare subsp. vulgare cDNA clone HM14N04
5-PRIME, mRNA sequence
Length = 612
Score = 117 bits (251), Expect = 3e-026
Identities = 45/56 (80%), Positives = 47/56 (83%)
Frame = +1 / +2
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD ICHPTEFDFF+C HA KGTSRP HYHVLRDDN F+AD LQSLT NLCY
Sbjct: 290 GTVVDRQICHPTEFDFFLCSHAGIKGTSRPAHYHVLRDDNNFSADDLQSLTNNLCY 457
Score = 109 bits (233), Expect = 1e-023
Identities = 44/57 (77%), Positives = 50/57 (87%)
Frame = -1 / -1
Query: 179 M*HKLYVRDCRASAVNLLSSRSTW*CVGRLVPLALAWMHTKKSNSVGWQILLSTTVP 9
+*H+L+VRDCR+SA+ LLSSRSTW*C GRLVPL AW+ KKSNSVGWQI LSTTVP
Sbjct: 459 V*HRLFVRDCRSSALKLLSSRSTW*CAGRLVPLIPAWLQRKKSNSVGWQICLSTTVP 289
>gb|BM100617.2|BM100617 EBma01_SQ005_L23_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ005_L23 5', mRNA sequence
Length = 670
Score = 114 bits (243), Expect = 4e-025
Identities = 43/56 (76%), Positives = 47/56 (83%)
Frame = +1 / +3
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD NICHPTEFDF++C HA +GTSRPTHYHVL D+N FTAD LQ LT NLCY
Sbjct: 432 GTVVDTNICHPTEFDFYLCSHAGIQGTSRPTHYHVLFDENGFTADGLQQLTNNLCY 599
>gb|BU971142.1|BU971142 HB16L19r BC Hordeum vulgare subsp. vulgare cDNA clone HB16L19
5-PRIME, mRNA sequence
Length = 470
Score = 114 bits (243), Expect = 4e-025
Identities = 43/56 (76%), Positives = 47/56 (83%)
Frame = +1 / +1
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD NICHPTEFDF++C HA +GTSRPTHYHVL D+N FTAD LQ LT NLCY
Sbjct: 283 GTVVDTNICHPTEFDFYLCSHAGIQGTSRPTHYHVLFDENGFTADGLQQLTNNLCY 450
>gb|BG415995.2|BG415995 HVSMEk0009F13f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0009F13f, mRNA sequence
Length = 970
Score = 112 bits (240), Expect = 1e-024
Identities = 42/56 (75%), Positives = 48/56 (85%)
Frame = +1 / +1
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTEFDF++C HA +GTSRP HYHVL D+NKFTAD LQ+LT NLCY
Sbjct: 100 GTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADELQTLTNNLCY 267
>gb|BJ473415.1|BJ473415 BJ473415 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal12f16 3', mRNA sequence
Length = 588
Score = 112 bits (240), Expect = 1e-024
Identities = 42/56 (75%), Positives = 48/56 (85%)
Frame = +1 / -3
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTEFDF++C HA +GTSRP HYHVL D+NKFTAD LQ+LT NLCY
Sbjct: 547 GTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADELQTLTNNLCY 380
>gb|CA030113.1|CA030113 HX06C02r HX Hordeum vulgare subsp. vulgare cDNA clone HX06C02
5-PRIME, mRNA sequence
Length = 624
Score = 112 bits (240), Expect = 1e-024
Identities = 42/56 (75%), Positives = 48/56 (85%)
Frame = +1 / +3
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTEFDF++C HA +GTSRP HYHVL D+NKFTAD LQ+LT NLCY
Sbjct: 213 GTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADELQTLTNNLCY 380
>gb|CB874722.1|CB874722 HX06C02w HX Hordeum vulgare subsp. vulgare cDNA clone HX06C02
3-PRIME, mRNA sequence
Length = 645
Score = 112 bits (240), Expect = 1e-024
Identities = 42/56 (75%), Positives = 48/56 (85%)
Frame = +1 / -2
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTEFDF++C HA +GTSRP HYHVL D+NKFTAD LQ+LT NLCY
Sbjct: 596 GTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADELQTLTNNLCY 429
>gb|CB874756.1|CB874756 HX06D16w HX Hordeum vulgare subsp. vulgare cDNA clone HX06D16
3-PRIME, mRNA sequence
Length = 635
Score = 112 bits (240), Expect = 1e-024
Identities = 42/56 (75%), Positives = 48/56 (85%)
Frame = +1 / -3
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTEFDF++C HA +GTSRP HYHVL D+NKFTAD LQ+LT NLCY
Sbjct: 591 GTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADELQTLTNNLCY 424
>gb|BJ451080.1|BJ451080 BJ451080 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak32j21 5', mRNA sequence
Length = 576
Score = 111 bits (236), Expect = 4e-024
Identities = 41/56 (73%), Positives = 47/56 (83%)
Frame = +1 / +1
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTEFDF++C HA +GTSRP HYHVL D+N FTAD LQ+LT NLCY
Sbjct: 208 GTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGLQTLTNNLCY 375
>gb|AV916245.1|AV916245 AV916245 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags12e13 5', mRNA sequence
Length = 481
Score = 107 bits (229), Expect = 4e-023
Identities = 39/56 (69%), Positives = 47/56 (83%)
Frame = +1 / +1
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTEFDF++C HA +GTSRP HYHVL D+N F+AD +Q+LT NLCY
Sbjct: 214 GTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFSADEMQTLTNNLCY 381
>gb|BE215344.1|BE215344 HV_CEb0006I15f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0006I15f, mRNA sequence
Length = 679
Score = 103 bits (220), Expect = 6e-022
Identities = 39/56 (69%), Positives = 46/56 (82%)
Frame = +1 / +2
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTEFDF++C HA +GTSRP +YHVL D+NKFTAD LQ+L LCY
Sbjct: 389 GTVVDSKICHPTEFDFYLCNHAGIQGTSRPANYHVLWDENKFTADELQTLKKKLCY 556
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 279,015,151
Number of Sequences: 312970
Number of extensions: 4418490
Number of successful extensions: 59793
Number of sequences better than 1.0e-020: 15
length of database: 58,378,179
effective HSP length: 50
effective length of database: 42,729,679
effective search space used: 5341209875
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)