TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3712941.2.1
(1473 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF258077.2|BF258077 HVSMEf0014L07f Hordeum vulgare seedl... 290 2e-092
gb|AL505620.1|AL505620 AL505620 Hordeum vulgare Barke roots... 319 2e-086
gb|BE559029.2|BE559029 HV_CEb0022G04f Hordeum vulgare seedl... 291 8e-078
gb|BQ465022.1|BQ465022 HU02G23r HU Hordeum vulgare subsp. v... 166 2e-069
gb|BQ663389.1|BQ663389 HU02G23u HU Hordeum vulgare subsp. v... 258 7e-068
gb|BI948612.1|BI948612 HVSMEl0010E03f Hordeum vulgare spike... 142 3e-057
gb|BF262816.1|BF262816 HV_CEa0005A16f Hordeum vulgare seedl... 122 9e-048
gb|BF256073.3|BF256073 HVSMEf0008K14f Hordeum vulgare seedl... 176 3e-043
gb|BF259816.3|BF259816 HVSMEf0020F12f Hordeum vulgare seedl... 143 2e-033
gb|AL506006.1|AL506006 AL506006 Hordeum vulgare Barke devel... 76 1e-030
gb|BF629785.2|BF629785 HVSMEb0013M23f Hordeum vulgare seedl... 60 2e-030
gb|AL502881.1|AL502881 AL502881 Hordeum vulgare Barke roots... 116 4e-030
gb|CA025160.1|CA025160 HZ51G03r HZ Hordeum vulgare subsp. v... 73 9e-030
gb|CA020774.1|CA020774 HZ37K18r HZ Hordeum vulgare subsp. v... 72 2e-029
gb|AL450690.1|AL450690 AL450690 Hordeum vulgare Barke etiol... 67 5e-028
gb|BI957573.1|BI957573 HVSMEn0010D05f Hordeum vulgare rachi... 67 5e-028
gb|BF254331.2|BF254331 HVSMEf0003K19f Hordeum vulgare seedl... 87 4e-027
gb|BI958463.1|BI958463 HVSMEn0015C15f Hordeum vulgare rachi... 77 2e-025
gb|BU989284.1|BU989284 HF21F01r HF Hordeum vulgare subsp. v... 115 8e-025
gb|BU994896.1|BU994896 HM08I11r HM Hordeum vulgare subsp. v... 54 3e-024
gb|BM369956.2|BM369956 EBro08_SQ002_H12_R root, 3 week, dro... 112 5e-024
gb|AV921964.1|AV921964 AV921964 K. Sato unpublished cDNA li... 110 2e-023
gb|CA022440.1|CA022440 HZ43D05r HZ Hordeum vulgare subsp. v... 51 2e-023
gb|AV926474.1|AV926474 AV926474 K. Sato unpublished cDNA li... 51 2e-023
gb|CB881016.1|CB881016 HM08I11w HM Hordeum vulgare subsp. v... 110 3e-023
gb|AL507314.1|AL507314 AL507314 Hordeum vulgare Barke devel... 51 4e-023
gb|AJ434640.1|AJ434640 AJ434640 S00002 Hordeum vulgare subs... 108 9e-023
gb|CV057758.1|CV057758 BNEL30e11 Barley EST endosperm libra... 108 9e-023
gb|BU994141.1|BU994141 HM05O05r HM Hordeum vulgare subsp. v... 88 1e-022
gb|CB880806.1|CB880806 HM07O05w HM Hordeum vulgare subsp. v... 88 8e-022
gb|AL509313.1|AL509313 AL509313 Hordeum vulgare Barke devel... 104 1e-021
gb|BU966781.1|BU966781 HB02F11r BC Hordeum vulgare subsp. v... 104 1e-021
gb|CA017988.1|CA017988 HV07B03r HV Hordeum vulgare subsp. v... 83 2e-021
gb|CA026993.1|CA026993 HZ57J07r HZ Hordeum vulgare subsp. v... 103 2e-021
gb|BQ459544.1|BQ459544 HA08M15r HA Hordeum vulgare subsp. v... 102 4e-021
gb|BF253867.2|BF253867 HVSMEf0002F12f Hordeum vulgare seedl... 79 5e-021
gb|BG309045.2|BG309045 HVSMEc0001K22f Hordeum vulgare seedl... 62 7e-021
>gb|BF258077.2|BF258077 HVSMEf0014L07f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0014L07f, mRNA sequence
Length = 573
Score = 290 bits (627), Expect(2) = 2e-092
Identities = 114/148 (77%), Positives = 131/148 (88%)
Frame = +3 / +3
Query: 336 DLRAATEIICSRTPSQLQIMKQTYYARFGTYLEHDIAHHTSGDHQKLLLAYMGIPRYEGP 515
DLRAATE+ICSRTPSQLQIMKQTY ARFG YLEHDI T GDHQKLLLAY+G+PR EGP
Sbjct: 3 DLRAATEVICSRTPSQLQIMKQTYRARFGCYLEHDITERTYGDHQKLLLAYLGVPRNEGP 182
Query: 516 EVDPTIVTHDAKDLYKAGEKRLGTDEKIFIRVFTERSWAHLASVSSAYHHMYDRKLEKVI 695
EVDP++VT DA++LY+ GEKR+GTDE+ FIR+F+ERSWAHLASV+ AY HMY R LEK +
Sbjct: 183 EVDPSVVTDDARELYRTGEKRVGTDERAFIRIFSERSWAHLASVAKAYQHMYARSLEKAV 362
Query: 696 KSETSGNFEFALLTILRCAENPAKYFAK 779
KSET+GNF+F LLTILRCA+ PAKYFAK
Sbjct: 363 KSETAGNFQFGLLTILRCADTPAKYFAK 446
Score = 219 bits (473), Expect(2) = 3e-064
Identities = 104/150 (69%), Positives = 114/150 (76%)
Frame = -3 / -3
Query: 784 KSLAKYFAGFSAHLRIVKSANSKFPEVSLLITFSNFRSYI*W*AEETDAKCAQLRSVKTR 605
+ LAKYFAG SAHLR+V S N KFP VSL FS R+Y+ W*A TDA+CAQLRS+K R
Sbjct: 451 QDLAKYFAGVSAHLRMVSSPNWKFPAVSLFTAFSRDRAYMCW*ALATDARCAQLRSLKMR 272
Query: 604 IKIFSSVPSLFSPALYKSFASCVTIVGSTSGPS*RGIPIYASKSFW*SPDVW*AMSCSR* 425
+K SSVP+LFSP Y S AS VT GSTSGPS RG P YASKSF *SP V MSCSR*
Sbjct: 271 MKARSSVPTLFSPVRYSSLASSVTTEGSTSGPSFRGTPRYASKSF**SP*VRSVMSCSR* 92
Query: 424 VPNLA**VCFIICNCDGVLEHIISVAALRS 335
PNLA *VCF+IC+CDGVLE I SVAALRS
Sbjct: 91 QPNLAR*VCFMICSCDGVLEQITSVAALRS 2
Score = 99.6 bits (211), Expect(2) = 4e-030
Identities = 53/148 (35%), Positives = 81/148 (54%)
Frame = -2 / -2
Query: 779 LSKILCWVFRASEDSQKCKFKVSRSFALDNLL*FPVIHMMVSRRNRCQVCPTAFSENTDK 600
L K+L A ED Q+ + +V L LL P +H++VS N QV P AF+E+ D+
Sbjct: 446 LGKVLRRSVGAPEDGQQPELEVPCCLTLHCLLQGPGVHVLVSFGNGRQVRPAAFAEDADE 267
Query: 599 NLLVRTQPFLTSFVQILCIMCHNCRINLGTFIAWNPHICK*KLLVITGCVVSNVMLKIST 420
L+ P L +Q+ ++CH+ R+ F++ + + K KLL+IT +VML+++T
Sbjct: 266 GPLIGAHPLLAGSIQLPRVVCHHRRVYFRAFVSRDSKVRKQKLLMITIGAFGDVMLEVAT 87
Query: 419 ESSIISLFHYLQL*WCPGTYNLSGCSQI 336
E + L H LQL PG L G SQ+
Sbjct: 86 EPRAVGLLHDLQLRRRPGADYLGGGSQV 3
Score = 70.7 bits (148), Expect(2) = 2e-092
Identities = 29/41 (70%), Positives = 34/41 (82%)
Frame = +3 / +2
Query: 777 KLLRKAMKGLGTDDMTLIRVVVTRTEIDMQYIKAEYLKKYK 899
++L KAMKGLGT + LIRVVVTRTE+DM+YIK EY KYK
Sbjct: 443 QVLHKAMKGLGTSNAALIRVVVTRTEVDMKYIKVEYHNKYK 565
Score = 52.8 bits (109), Expect(2) = 4e-030
Identities = 20/36 (55%), Positives = 24/36 (66%)
Frame = -2 / -3
Query: 863 HVNLGPRHHHPYKCHVISA*TFHGLS*ELSKILCWV 756
HV+LGPRHHHPY+C V A FH L +L+K V
Sbjct: 529 HVDLGPRHHHPYECRVAGAQAFHRLVQDLAKYFAGV 422
Score = 47.3 bits (97), Expect(2) = 3e-064
Identities = 21/36 (58%), Positives = 25/36 (69%)
Frame = -3 / -1
Query: 898 LYFFKYSALIYCMSISVLVTTTLISVMSSVPKPFMA 791
LY YS L+Y MS SVLVTTT +S VP+PF+A
Sbjct: 564 LYLLWYSTLMYFMSTSVLVTTTRMSAALLVPRPFIA 457
>gb|AL505620.1|AL505620 AL505620 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW09A09V 5', mRNA sequence
Length = 468
Score = 319 bits (692), Expect = 2e-086
Identities = 131/151 (86%), Positives = 144/151 (95%)
Frame = +3 / +1
Query: 516 EVDPTIVTHDAKDLYKAGEKRLGTDEKIFIRVFTERSWAHLASVSSAYHHMYDRKLEKVI 695
EVDPTIVTHDAKDLYKAGEK+LGTDEK FIR+FTERSWAH+A+V+SAY HMYDR L+KV+
Sbjct: 16 EVDPTIVTHDAKDLYKAGEKKLGTDEKTFIRIFTERSWAHMAAVASAYQHMYDRSLQKVV 195
Query: 696 KSETSGNFEFALLTILRCAENPAKYFAKLLRKAMKGLGTDDMTLIRVVVTRTEIDMQYIK 875
KSETSGNFE AL+TILRCAENPAKYFAK+LRK+MKGLGTDD TL+RVVVTRTEIDMQYIK
Sbjct: 196 KSETSGNFEVALITILRCAENPAKYFAKVLRKSMKGLGTDDKTLVRVVVTRTEIDMQYIK 375
Query: 876 AEYLKKYKKPLAEAINSETSGNYRTFLLSLV 968
AEY KKYKKPLA+AI+SETSG YRTFLLSLV
Sbjct: 376 AEYYKKYKKPLADAIHSETSGGYRTFLLSLV 468
Score = 256 bits (554), Expect = 2e-067
Identities = 117/151 (77%), Positives = 126/151 (83%)
Frame = -3 / -2
Query: 967 TSERRNVR*FPDVSELIASANGFLYFFKYSALIYCMSISVLVTTTLISVMSSVPKPFMAF 788
T E RNVR* PDVSE IASANGFLYF YSALIYC+SISVLVTTTL SV+SSVP+PFM F
Sbjct: 467 TRESRNVR*PPDVSEWIASANGFLYFL*YSALIYCISISVLVTTTLTSVLSSVPRPFMDF 288
Query: 787 RKSLAKYFAGFSAHLRIVKSANSKFPEVSLLITFSNFRSYI*W*AEETDAKCAQLRSVKT 608
+LAKY AGFSAHLRIV A SKFP+VSL TF N RSY+ W*AE T A CAQLRSVK
Sbjct: 287 LNTLAKYLAGFSAHLRIVIRATSKFPDVSLFTTFCNDRSYMCW*AEATAAMCAQLRSVKM 108
Query: 607 RIKIFSSVPSLFSPALYKSFASCVTIVGSTS 515
R+K+FSSVPS FSPAL +SFASCVTIVGSTS
Sbjct: 107 RMKVFSSVPSFFSPAL*RSFASCVTIVGSTS 15
Score = 197 bits (424), Expect = 2e-049
Identities = 88/151 (58%), Positives = 116/151 (76%)
Frame = +2 / +3
Query: 515 RG*SYNCDT*CKGFVQSW*EKAGYGREDFYPCFH*TQLGTLGICFFCLPSYV*PEIREGY 694
RG*S+ DT*C+G +QSW*E+AG+ E+ +P H*TQLGT G C FCLP++V* I EG
Sbjct: 15 RG*SHYSDT*CEGPLQSW*EEAGHR*ENLHPHLH*TQLGTHGSCCFCLPAHV*SVITEGC 194
Query: 695 QERNFWKL*ICTFDYPQMRGKPSKVFC*ALTKGHERFRH**HDTYKGGGDEDRD*HAIYQ 874
+E N WKL* C+ +YPQM + S VFC* + + HER R+** DT KG G+ED D*+A+YQ
Sbjct: 195 EE*NIWKL*SCSDNYPQMC*ESS*VFC*GVKEVHERSRY**QDTCKGCGNED*D*YAVYQ 374
Query: 875 GRVLEEV*EAIS*GYQLRDIRKLSDVPSFTC 967
GR+L+E+ +A+S* Y R+IR+LSDVP+F+C
Sbjct: 375 GRILQEIQKAVS*CYPFRNIRRLSDVPAFSC 467
Score = 173 bits (373), Expect(2) = 7e-044
Identities = 72/116 (62%), Positives = 85/116 (73%)
Frame = -2 / -1
Query: 863 HVNLGPRHHHPYKCHVISA*TFHGLS*ELSKILCWVFRASEDSQKCKFKVSRSFALDNLL 684
H+NL PR+H+PYKC VIS *TFHGL * LSKIL W+ SEDS + FKVSR F L NLL
Sbjct: 363 HINLSPRYHNPYKCLVIST*TFHGLP*HLSKILSWILSTSEDSYQSNFKVSRCFTLHNLL 184
Query: 683 *FPVIHMMVSRRNRCQVCPTAFSENTDKNLLVRTQPFLTSFVQILCIMCHNCRINL 516
* P+IH++VSR N C VCP AFSE+ D+ L+ Q LTSFV++L IMCH INL
Sbjct: 183 **PIIHVLVSRSNSCHVCPAAFSEDADEGFLICAQLLLTSFVEVLRIMCHYSGINL 16
Score = 147 bits (315), Expect = 2e-034
Identities = 78/150 (52%), Positives = 91/150 (60%)
Frame = -1 / -3
Query: 966 QVKEGTSDSFLMSRS**PQLMASYTSSSTLP*YIACQXXXXXXXXXXXSCHQCLNLSWPF 787
Q K GTSD+ LM + * QL A S S LP*Y A Q SCHQ L+LSW
Sbjct: 466 QEKAGTSDNLLMFLNG*HQLTAFCISCSILP*YTAYQSQSSLPQPLQVSCHQYLDLSWTS 287
Query: 786 VRA*QNTLLGFPRI*G*SKVQIQSFQKFRS**PSLISGHTYDGKQKKQMPSVPNCVQ*KH 607
+ *QNT L I*G* Q+QSFQ F S PS+++ HT GKQK+Q+P VP+CVQ*+
Sbjct: 286 LTP*QNT*LDSQHI*G*LSEQLQSFQMFHSSQPSVMTDHTCAGKQKQQLPCVPSCVQ*RC 107
Query: 606 G*KSSRPYPAFSHQLCTNPLHHVSQL*DQP 517
G*+ S PA SHQLC P HHVS DQP
Sbjct: 106 G*RFSHLCPASSHQLCRGPSHHVSL*WDQP 17
Score = 136 bits (291), Expect(2) = 4e-032
Identities = 71/117 (60%), Positives = 78/117 (66%)
Frame = +1 / +2
Query: 517 RLILQL*HMMQRICTKLVRKGWVRTRRFLSVFSLNAVGHTWHLFLLLTIICMTGN*RRLS 696
RLI *HMM+R TKLVR+ W + R+ S SLNA GHTW L LLLT CM G+ RRL
Sbjct: 17 RLIPL**HMMRRTSTKLVRRSWAQMRKPSSASSLNAAGHTWQLLLLLTSTCMIGHYRRL* 196
Query: 697 RAKLLETLNLHF*LSSDARKTQQSILLSSYERP*KV*ALMT*HL*GWW*RGPRLTCN 867
R K LETL L *LSSD + Q SILL P*KV* LMT HL*G W*RG RL C+
Sbjct: 197 RVKHLETLKLL**LSSDVLRIQLSILLRC*GSP*KV*VLMTRHL*GLW*RGLRLICS 367
Score = 24.9 bits (48), Expect(2) = 7e-044
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = -2 / -1
Query: 968 NK*KKERPIVS*C 930
NK K+ERPI S*C
Sbjct: 468 NKRKQERPITS*C 430
Score = 23.1 bits (44), Expect(2) = 4e-032
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +1 / +2
Query: 928 RHQETIGRSFFHL 966
+HQE IGRS F L
Sbjct: 428 KHQEVIGRSCFLL 466
>gb|BE559029.2|BE559029 HV_CEb0022G04f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0022G04f, mRNA sequence
Length = 669
Score = 291 bits (629), Expect = 8e-078
Identities = 119/139 (85%), Positives = 132/139 (94%)
Frame = +3 / +3
Query: 555 LYKAGEKRLGTDEKIFIRVFTERSWAHLASVSSAYHHMYDRKLEKVIKSETSGNFEFALL 734
LYKAGEK+LGTDEK FIR+FTERSWAH+A+V+SAY HMYDR L+KV+KSETSGNFE AL+
Sbjct: 3 LYKAGEKKLGTDEKTFIRIFTERSWAHMAAVASAYQHMYDRSLQKVVKSETSGNFEVALI 182
Query: 735 TILRCAENPAKYFAKLLRKAMKGLGTDDMTLIRVVVTRTEIDMQYIKAEYLKKYKKPLAE 914
TILRCAENPAKYFAK+LRK+MKGLGTDD TL+RVVVTRTEIDMQYIKAEY KKYKKPLA+
Sbjct: 183 TILRCAENPAKYFAKVLRKSMKGLGTDDKTLVRVVVTRTEIDMQYIKAEYYKKYKKPLAD 362
Query: 915 AINSETSGNYRTFLLSLVG 971
AI+SETSG YRTFLLSLVG
Sbjct: 363 AIHSETSGGYRTFLLSLVG 419
Score = 232 bits (500), Expect(2) = 3e-061
Identities = 105/137 (76%), Positives = 113/137 (82%)
Frame = -3 / -3
Query: 970 PTSERRNVR*FPDVSELIASANGFLYFFKYSALIYCMSISVLVTTTLISVMSSVPKPFMA 791
PT E RNVR* PDVSE IASANGFLYF YSALIYC+SISVLVTTTL SV+SSVP+PFM
Sbjct: 418 PTRESRNVR*PPDVSEWIASANGFLYFL*YSALIYCISISVLVTTTLTSVLSSVPRPFMD 239
Query: 790 FRKSLAKYFAGFSAHLRIVKSANSKFPEVSLLITFSNFRSYI*W*AEETDAKCAQLRSVK 611
F +LAKY AGFSAHLRIV A SKFP+VSL TF N RSY+ W*AE T A CAQLRSVK
Sbjct: 238 FLNTLAKYLAGFSAHLRIVIRATSKFPDVSLFTTFCNDRSYMCW*AEATAAMCAQLRSVK 59
Query: 610 TRIKIFSSVPSLFSPAL 560
R+K+FSSVPS FSPAL
Sbjct: 58 MRMKVFSSVPSFFSPAL 8
Score = 184 bits (396), Expect = 1e-045
Identities = 80/138 (57%), Positives = 106/138 (76%)
Frame = +2 / +2
Query: 557 VQSW*EKAGYGREDFYPCFH*TQLGTLGICFFCLPSYV*PEIREGYQERNFWKL*ICTFD 736
+QSW*E+AG+ E+ +P H*TQLGT G C FCLP++V* I EG +E N WKL* C+ +
Sbjct: 5 LQSW*EEAGHR*ENLHPHLH*TQLGTHGSCCFCLPAHV*SVITEGCEE*NIWKL*SCSDN 184
Query: 737 YPQMRGKPSKVFC*ALTKGHERFRH**HDTYKGGGDEDRD*HAIYQGRVLEEV*EAIS*G 916
YPQM + S VFC* + + HER R+** DT KG G+ED D*+A+YQGR+L+E+ +A+S*
Sbjct: 185 YPQMC*ESS*VFC*GVKEVHERSRY**QDTCKGCGNED*D*YAVYQGRILQEIQKAVS*C 364
Query: 917 YQLRDIRKLSDVPSFTCW 970
Y R+IR+LSDVP+F+CW
Sbjct: 365 YPFRNIRRLSDVPAFSCW 418
Score = 155 bits (334), Expect(2) = 3e-039
Identities = 64/103 (62%), Positives = 76/103 (73%)
Frame = -2 / -2
Query: 863 HVNLGPRHHHPYKCHVISA*TFHGLS*ELSKILCWVFRASEDSQKCKFKVSRSFALDNLL 684
H+NL PR+H+PYKC VIS *TFHGL * LSKIL W+ SEDS + FKVSR F L NLL
Sbjct: 311 HINLSPRYHNPYKCLVIST*TFHGLP*HLSKILSWILSTSEDSYQSNFKVSRCFTLHNLL 132
Query: 683 *FPVIHMMVSRRNRCQVCPTAFSENTDKNLLVRTQPFLTSFVQ 555
* P+IH++VSR N C VCP AFSE+ D+ L+ Q LTSFV+
Sbjct: 131 **PIIHVLVSRSNSCHVCPAAFSEDADEGFLICAQLLLTSFVE 3
Score = 133 bits (284), Expect = 3e-030
Identities = 71/137 (51%), Positives = 84/137 (61%)
Frame = -1 / -1
Query: 969 QQVKEGTSDSFLMSRS**PQLMASYTSSSTLP*YIACQXXXXXXXXXXXSCHQCLNLSWP 790
QQ K GTSD+ LM + * QL A S S LP*Y A Q SCHQ L+LSW
Sbjct: 417 QQEKAGTSDNLLMFLNG*HQLTAFCISCSILP*YTAYQSQSSLPQPLQVSCHQYLDLSWT 238
Query: 789 FVRA*QNTLLGFPRI*G*SKVQIQSFQKFRS**PSLISGHTYDGKQKKQMPSVPNCVQ*K 610
+ *QNT L I*G* Q+QSFQ F S PS+++ HT GKQK+Q+P VP+CVQ*+
Sbjct: 237 SLTP*QNT*LDSQHI*G*LSEQLQSFQMFHSSQPSVMTDHTCAGKQKQQLPCVPSCVQ*R 58
Query: 609 HG*KSSRPYPAFSHQLC 559
G*+ S PA SHQLC
Sbjct: 57 CG*RFSHLCPASSHQLC 7
Score = 123 bits (264), Expect(2) = 1e-029
Identities = 63/103 (61%), Positives = 69/103 (66%)
Frame = +1 / +1
Query: 559 TKLVRKGWVRTRRFLSVFSLNAVGHTWHLFLLLTIICMTGN*RRLSRAKLLETLNLHF*L 738
TKLVR+ W + R+ S SLNA GHTW L LLLT CM G+ RRL R K LETL L *L
Sbjct: 7 TKLVRRSWAQMRKPSSASSLNAAGHTWQLLLLLTSTCMIGHYRRL*RVKHLETLKLL**L 186
Query: 739 SSDARKTQQSILLSSYERP*KV*ALMT*HL*GWW*RGPRLTCN 867
SSD + Q SILL P*KV* LMT HL*G W*RG RL C+
Sbjct: 187 SSDVLRIQLSILLRC*GSP*KV*VLMTRHL*GLW*RGLRLICS 315
Score = 27.2 bits (53), Expect(2) = 3e-039
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = -2 / -2
Query: 971 TNK*KKERPIVS*C 930
TNK K+ERPI S*C
Sbjct: 419 TNKRKQERPITS*C 378
Score = 26.7 bits (52), Expect(2) = 1e-029
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +1 / +1
Query: 928 RHQETIGRSFFHLLV 972
+HQE IGRS F LLV
Sbjct: 376 KHQEVIGRSCFLLLV 420
Score = 24.9 bits (48), Expect(2) = 3e-061
Identities = 7/16 (43%), Positives = 13/16 (81%)
Frame = -1 / -1
Query: 1011 ISCPMVET*PNGHDQQ 964
++C ++T*PNG+ Q+
Sbjct: 456 VACTAMDT*PNGYQQE 409
>gb|BQ465022.1|BQ465022 HU02G23r HU Hordeum vulgare subsp. vulgare cDNA clone HU02G23
5-PRIME, mRNA sequence
Length = 700
Score = 166 bits (358), Expect(2) = 2e-069
Identities = 68/80 (85%), Positives = 77/80 (96%)
Frame = +3 / +2
Query: 195 SMYHEELSHRISSELSGNHKKAMSLWILDPAGRDATVLREALNGDTMDLRAATEIICSRT 374
+MY EELS RISSELSGNHKKAMSLWILDPAGRDATVL+EAL+ +++DL+AAT+IICSRT
Sbjct: 461 TMYSEELSRRISSELSGNHKKAMSLWILDPAGRDATVLKEALSAESLDLKAATDIICSRT 640
Query: 375 PSQLQIMKQTYYARFGTYLE 434
PSQLQIMKQTYYA+FGTYLE
Sbjct: 641 PSQLQIMKQTYYAKFGTYLE 700
Score = 144 bits (310), Expect(2) = 9e-051
Identities = 65/79 (82%), Positives = 69/79 (87%)
Frame = -3 / -2
Query: 433 SR*VPNLA**VCFIICNCDGVLEHIISVAALRSIVSPFRASLKTVASRPAGSRIHSDIAF 254
SR*VPN A* VCFIIC+CDGVLEHIISVAA RS +S RAS +TVASRPAGSRI SDIAF
Sbjct: 699 SR*VPNFA*YVCFIICSCDGVLEHIISVAAFRSRLSALRASFRTVASRPAGSRIQSDIAF 520
Query: 253 LWFPLSSDEIRWESSS*YI 197
LWFPLSSD+IR ESSS YI
Sbjct: 519 LWFPLSSDDIRRESSSEYI 463
Score = 120 bits (256), Expect(2) = 2e-041
Identities = 54/79 (68%), Positives = 60/79 (75%)
Frame = -2 / -1
Query: 434 LKISTESSIISLFHYLQL*WCPGTYNLSGCSQIHSVTI*SFSQNSCITSSRIKNPQRHSF 255
LKIST+ II LFHYLQL*WCP TY +S C QI + + SF QNS ITSSRIKNP+RH F
Sbjct: 700 LKISTKLCIICLFHYLQL*WCPRTYYISSCFQIKTFSTESFFQNSRITSSRIKNPERHCF 521
Query: 254 LVVSTEFR*NTVGEFLMIH 198
LVVSTEFR T +FL IH
Sbjct: 520 LVVSTEFRRYTTRKFLGIH 464
Score = 119 bits (255), Expect(2) = 1e-049
Identities = 54/79 (68%), Positives = 62/79 (78%)
Frame = +2 / +1
Query: 197 YVS*GTLPPYFI*TQWKPQESYVAVDS*SCWT*CNCFERSSKW*HYGSESSH*DYMFQDT 376
YV GT Y +*TQWKPQES VA+DS*SCWT*C+C ERSS+ * SESS+* MF+DT
Sbjct: 463 YVFRGTFASYIV*TQWKPQESNVALDS*SCWT*CDCSERSSQC*KS*SESSY*YNMFEDT 642
Query: 377 ITVANNETDLLC*IRYLS* 433
IT ANNETD+LC + YLS*
Sbjct: 643 ITAANNETDILCKVWYLS* 699
Score = 117 bits (250), Expect(2) = 2e-069
Identities = 49/59 (83%), Positives = 50/59 (84%)
Frame = +2 / +2
Query: 29 AMASLTLPPAPPNPRQDAIDLHKAFKGFGCDSTTGINILTHRDSGQRGLIQQEYRVYVS 205
AMASLTLPPAPPNPRQDAIDL KAFKGFGCDSTT NIL HRDS QRG IQQEY+ S
Sbjct: 296 AMASLTLPPAPPNPRQDAIDLQKAFKGFGCDSTTVSNILAHRDSMQRGYIQQEYKTMYS 472
Score = 111 bits (237), Expect(2) = 8e-036
Identities = 54/79 (68%), Positives = 61/79 (77%)
Frame = +1 / +3
Query: 196 LCIMRNSPTVFHLNSVETTRKLCRCGFLILLDVMQLF*EKL*MVTLWI*EQPLRLYVPGH 375
LCI RN V+ LNSVETTRK CR GFLILLDVM+LF*+KL ++ + I*+Q L YV GH
Sbjct: 462 LCIPRNFRVVYRLNSVETTRKQCRSGFLILLDVMRLF*KKLSVLKVLI*KQLLI*YVRGH 641
Query: 376 HHSCK**NRLIMLDSVLIL 432
HHSCK**NR IM VLIL
Sbjct: 642 HHSCK**NRHIMQSLVLIL 698
Score = 111 bits (236), Expect(2) = 6e-033
Identities = 54/79 (68%), Positives = 58/79 (73%)
Frame = -1 / -3
Query: 432 QDKYRI*HNKSVSLFATVMVSWNI*SQWLLSDP*CHHLELLSKQLHHVQQDQESTAT*LS 253
QDKY+ HN SVSLFA VMVS NI Q LLSD H ELLS+Q HHVQQDQES AT LS
Sbjct: 698 QDKYQTLHNMSVSLFAAVMVSSNILYQ*LLSDQDFQH*ELLSEQSHHVQQDQESRATLLS 519
Query: 252 CGFH*VQMKYGGRVPHDT* 196
CGFH*VQ Y +VP +T*
Sbjct: 518 CGFH*VQTIYDAKVPRNT* 462
Score = 98.2 bits (208), Expect(2) = 1e-049
Identities = 38/57 (66%), Positives = 44/57 (77%)
Frame = +1 / +1
Query: 22 TAGDGEPHPAAGAPQPTPGRHRPPQGLQRVWM*QYNRDKHTYSSRFGAAWTHSTGIQ 192
+ G+GEPH AAGAP+P PGRHRPP+GLQRVW+* YN K+T S A W HSTGIQ
Sbjct: 289 SVGNGEPHLAAGAPEPPPGRHRPPKGLQRVWL**YNSFKYTCSP*LNATWIHSTGIQ 459
Score = 76.7 bits (161), Expect(2) = 9e-051
Identities = 32/40 (80%), Positives = 33/40 (82%)
Frame = -1 / -2
Query: 192 LYSC*MSPRCPESR*VSMFIPVVLSHPNPLKALWRSMASW 73
LYSC*M PRC ESR* S+F VVLS PNPLKA WRSMASW
Sbjct: 459 LYSC*MYPRCIESR*ASIFETVVLSQPNPLKAFWRSMASW 340
Score = 70.3 bits (147), Expect(2) = 2e-041
Identities = 29/42 (69%), Positives = 35/42 (83%)
Frame = -3 / -1
Query: 190 VFLLNESTLPRIAMSKYVYPCCTVTSKPFEGLVEVDGVLAWV 65
VFLLN STL + +SKY+ CCT+T+KPFEGL+EVDGVLA V
Sbjct: 457 VFLLNVSTLH*VTVSKYI*NCCTITAKPFEGLLEVDGVLAGV 332
Score = 60.2 bits (125), Expect(2) = 8e-036
Identities = 28/42 (66%), Positives = 31/42 (73%)
Frame = +3 / +3
Query: 66 THARTPSTSTRPSKGLDVTVQQG*TYLLIAIRGSVDSFNRNT 191
T ARTPSTS RPSKGL V VQQ YLL + +VD+FNRNT
Sbjct: 333 TPARTPSTSKRPSKGLAVIVQQFQIYLLTVTQCNVDTFNRNT 458
Score = 51.0 bits (105), Expect(2) = 6e-033
Identities = 23/36 (63%), Positives = 25/36 (69%)
Frame = -2 / -3
Query: 191 CIPVE*VHAAPNRDE*VCLSLLYCHIQTL*RPCGGR 84
CIPVE +H A + E V L LLY H QTL*RP GGR
Sbjct: 458 CIPVECIHVALSHGEQVYLKLLYYHSQTL*RPFGGR 351
>gb|BQ663389.1|BQ663389 HU02G23u HU Hordeum vulgare subsp. vulgare cDNA clone HU02G23
3-PRIME, mRNA sequence
Length = 495
Score = 258 bits (557), Expect = 7e-068
Identities = 105/124 (84%), Positives = 118/124 (95%)
Frame = +3 / -2
Query: 600 FIRVFTERSWAHLASVSSAYHHMYDRKLEKVIKSETSGNFEFALLTILRCAENPAKYFAK 779
FIR+FTERSWAH+A+V+SAY HMYDR L+KV+KSETSGNFE AL+TILRCAENPAKYFAK
Sbjct: 491 FIRIFTERSWAHMAAVASAYQHMYDRSLQKVVKSETSGNFEVALITILRCAENPAKYFAK 312
Query: 780 LLRKAMKGLGTDDMTLIRVVVTRTEIDMQYIKAEYLKKYKKPLAEAINSETSGNYRTFLL 959
+LRK+MKGLGTDD TL+RVVVTRTEIDMQYIKAEY KKYKKPLA+AI+S+TSG YRTFLL
Sbjct: 311 VLRKSMKGLGTDDKTLVRVVVTRTEIDMQYIKAEYYKKYKKPLADAIHSKTSGGYRTFLL 132
Query: 960 SLVG 971
SLVG
Sbjct: 131 SLVG 120
Score = 204 bits (440), Expect(2) = 4e-053
Identities = 93/125 (74%), Positives = 101/125 (80%)
Frame = -3 / +1
Query: 970 PTSERRNVR*FPDVSELIASANGFLYFFKYSALIYCMSISVLVTTTLISVMSSVPKPFMA 791
PT E RNVR* PDV E IASANGFLYF YSALIYC+SISVLVTTTL SV+SSVP+PFM
Sbjct: 121 PTRESRNVR*PPDVFEWIASANGFLYFL*YSALIYCISISVLVTTTLTSVLSSVPRPFMD 300
Query: 790 FRKSLAKYFAGFSAHLRIVKSANSKFPEVSLLITFSNFRSYI*W*AEETDAKCAQLRSVK 611
F +LAKY AGFSAHLRIV A SKFP+VSL TF N RSY+ W*AE T A CAQLRSVK
Sbjct: 301 FLNTLAKYLAGFSAHLRIVIRATSKFPDVSLFTTFCNDRSYMCW*AEATAAMCAQLRSVK 480
Query: 610 TRIKI 596
R+K+
Sbjct: 481 MRMKV 495
Score = 165 bits (354), Expect = 7e-040
Identities = 71/125 (56%), Positives = 95/125 (76%)
Frame = +2 / -1
Query: 596 DFYPCFH*TQLGTLGICFFCLPSYV*PEIREGYQERNFWKL*ICTFDYPQMRGKPSKVFC 775
+ +P H*TQLGT G C FCLP++V* I EG +E N WKL* C+ +YPQM + S VFC
Sbjct: 495 NLHPHLH*TQLGTHGSCCFCLPAHV*SVITEGCEE*NIWKL*SCSDNYPQMC*ESS*VFC 316
Query: 776 *ALTKGHERFRH**HDTYKGGGDEDRD*HAIYQGRVLEEV*EAIS*GYQLRDIRKLSDVP 955
* + + HER R+** DT KG G+ED D*+A+YQGR+L+E+ +A+S* Y ++IR+LSDVP
Sbjct: 315 *GVKEVHERSRY**QDTCKGCGNED*D*YAVYQGRILQEIQKAVS*CYPFKNIRRLSDVP 136
Query: 956 SFTCW 970
+F+CW
Sbjct: 135 AFSCW 121
Score = 141 bits (303), Expect(2) = 5e-035
Identities = 57/88 (64%), Positives = 67/88 (76%)
Frame = -2 / +3
Query: 863 HVNLGPRHHHPYKCHVISA*TFHGLS*ELSKILCWVFRASEDSQKCKFKVSRSFALDNLL 684
H+NL PR+H+PYKC VIS *TFHGL * LSKIL W+ SEDS + FKVSR F L NLL
Sbjct: 228 HINLSPRYHNPYKCLVIST*TFHGLP*HLSKILSWILSTSEDSYQSNFKVSRCFTLHNLL 407
Query: 683 *FPVIHMMVSRRNRCQVCPTAFSENTDK 600
* P+IH++VSR N C VCP AFSE+ D+
Sbjct: 408 **PIIHVLVSRSNSCHVCPAAFSEDADE 491
Score = 116 bits (248), Expect = 3e-025
Identities = 63/124 (50%), Positives = 76/124 (61%)
Frame = -1 / +2
Query: 969 QQVKEGTSDSFLMSRS**PQLMASYTSSSTLP*YIACQXXXXXXXXXXXSCHQCLNLSWP 790
QQ K GTSD+ LM + * QL A S S LP*Y A Q SCHQ L+LSW
Sbjct: 122 QQEKAGTSDNLLMFLNG*HQLTAFCISCSILP*YTAYQSQSSLPQPLQVSCHQYLDLSWT 301
Query: 789 FVRA*QNTLLGFPRI*G*SKVQIQSFQKFRS**PSLISGHTYDGKQKKQMPSVPNCVQ*K 610
+ *QNT L I*G* Q+QSFQ F S PS+++ HT GKQK+Q+P VP+CVQ*+
Sbjct: 302 SLTP*QNT*LDSQHI*G*LSEQLQSFQMFHSSQPSVMTDHTCAGKQKQQLPCVPSCVQ*R 481
Query: 609 HG*K 598
G*+
Sbjct: 482 CG*R 493
Score = 106 bits (227), Expect(2) = 2e-024
Identities = 56/88 (63%), Positives = 59/88 (67%)
Frame = +1 / -3
Query: 604 SVFSLNAVGHTWHLFLLLTIICMTGN*RRLSRAKLLETLNLHF*LSSDARKTQQSILLSS 783
S SLNA GHTW L LLLT CM G+ RRL R K LETL L *LSSD + Q SILL
Sbjct: 487 SASSLNAAGHTWQLLLLLTSTCMIGHYRRL*RVKHLETLKLL**LSSDVLRIQLSILLRC 308
Query: 784 YERP*KV*ALMT*HL*GWW*RGPRLTCN 867
P*KV* LMT HL*G W*RG RL C+
Sbjct: 307 *GSP*KV*VLMTRHL*GLW*RGLRLICS 224
Score = 27.2 bits (53), Expect(2) = 5e-035
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = -2 / +3
Query: 971 TNK*KKERPIVS*C 930
TNK K+ERPI S*C
Sbjct: 120 TNKRKQERPITS*C 161
Score = 26.7 bits (52), Expect(2) = 2e-024
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +1 / -3
Query: 928 RHQETIGRSFFHLLV 972
+HQE IGRS F LLV
Sbjct: 163 KHQEVIGRSCFLLLV 119
Score = 24.9 bits (48), Expect(2) = 4e-053
Identities = 7/16 (43%), Positives = 13/16 (81%)
Frame = -1 / +2
Query: 1011 ISCPMVET*PNGHDQQ 964
++C ++T*PNG+ Q+
Sbjct: 83 VACTAMDT*PNGYQQE 130
>gb|BI948612.1|BI948612 HVSMEl0010E03f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0010E03f, mRNA sequence
Length = 812
Score = 142 bits (305), Expect(2) = 3e-057
Identities = 54/89 (60%), Positives = 72/89 (80%)
Frame = +3 / +2
Query: 195 SMYHEELSHRISSELSGNHKKAMSLWILDPAGRDATVLREALNGDTMDLRAATEIICSRT 374
++YH++L HR+S+ELSGNHKKAM LW+LDP GRDA +L ++LNGD DLRAATE+ICS+T
Sbjct: 212 AIYHQDLYHRLSTELSGNHKKAMLLWVLDPVGRDAAILNQSLNGDITDLRAATEVICSQT 391
Query: 375 PSQLQIMKQTYYARFGTYLEHDIAHHTSG 461
P QL +M+Q Y ARFG YL+ + + +G
Sbjct: 392 P*QLHMMRQGYRARFGCYLKRTVPYALTG 478
Score = 100 bits (213), Expect(2) = 3e-057
Identities = 41/61 (67%), Positives = 48/61 (78%)
Frame = +2 / +2
Query: 11 HAQRLPAMASLTLPPAPPNPRQDAIDLHKAFKGFGCDSTTGINILTHRDSGQRGLIQQEY 190
H + L +MASL++PP +PR DAI LH+AFKGFGCDSTT INIL HRD+ QR LI QEY
Sbjct: 29 HVRLLRSMASLSVPPVLTSPRHDAIALHRAFKGFGCDSTTVINILAHRDATQRALIMQEY 208
Query: 191 R 193
R
Sbjct: 209 R 211
Score = 95.5 bits (202), Expect(2) = 6e-033
Identities = 44/74 (59%), Positives = 50/74 (67%)
Frame = -3 / -3
Query: 430 R*VPNLA**VCFIICNCDGVLEHIISVAALRSIVSPFRASLKTVASRPAGSRIHSDIAFL 251
R* P A * C I+C+C GV E + SVAA RS++SP R L+ ASRP GS HS IAFL
Sbjct: 447 R*HPKRAR*PCLIMCSC*GVWEQMTSVAARRSVMSPLRDWLRMAASRPTGSSTHSSIAFL 268
Query: 250 WFPLSSDEIRWESS 209
WFPLSS E RW S
Sbjct: 267 WFPLSSVERRWYRS 226
Score = 66.6 bits (139), Expect(2) = 6e-033
Identities = 28/40 (70%), Positives = 29/40 (72%)
Frame = -1 / -3
Query: 192 LYSC*MSPRCPESR*VSMFIPVVLSHPNPLKALWRSMASW 73
LYSC MS RC SR M I VVLS P PLKALWR+MASW
Sbjct: 210 LYSCMMSARCVASRCARMLITVVLSQPKPLKALWRAMASW 91
>gb|BF262816.1|BF262816 HV_CEa0005A16f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0005A16f, mRNA sequence
Length = 868
Score = 122 bits (261), Expect(3) = 9e-048
Identities = 51/67 (76%), Positives = 55/67 (82%)
Frame = +3 / +1
Query: 276 LDPAGRDATVLREALNGDTMDLRAATEIICSRTPSQLQIMKQTYYARFGTYLEHDIAHHT 455
L AGRDAT+L +ALNGD DLRAATE+ICSRTPSQLQIMKQTY ARFG YLE DI T
Sbjct: 19 LKHAGRDATILNQALNGDITDLRAATEVICSRTPSQLQIMKQTYRARFGCYLERDITERT 198
Query: 456 SGDHQKL 476
GDHQK+
Sbjct: 199 YGDHQKV 219
Score = 90.0 bits (190), Expect(3) = 5e-032
Identities = 45/68 (66%), Positives = 51/68 (75%)
Frame = -3 / -3
Query: 475 SFW*SPDVW*AMSCSR*VPNLA**VCFIICNCDGVLEHIISVAALRSIVSPFRASLKTVA 296
+F *SP V MS SR* PNLA *VCF+IC+CDGVLE I SVAALRS++SP RA VA
Sbjct: 218 TF**SP*VRSVMSRSR*QPNLAR*VCFMICSCDGVLEQITSVAALRSVMSPLRAWFNMVA 39
Query: 295 SRPAGSRI 272
SRPA R+
Sbjct: 38 SRPACFRL 15
Score = 80.3 bits (169), Expect(3) = 9e-048
Identities = 31/48 (64%), Positives = 41/48 (85%)
Frame = +3 / +2
Query: 471 KLLLAYMGIPRYEGPEVDPTIVTHDAKDLYKAGEKRLGTDEKIFIRVF 614
+LLLAY+G+PR EGPEVDP+ VT DA++L + GEKR+GTDE+ FI +F
Sbjct: 335 QLLLAYLGVPRNEGPEVDPSGVTDDARELDRTGEKRVGTDERAFIPIF 478
Score = 60.6 bits (126), Expect(3) = 5e-032
Identities = 30/47 (63%), Positives = 32/47 (68%)
Frame = -3 / -2
Query: 613 KTRIKIFSSVPSLFSPALYKSFASCVTIVGSTSGPS*RGIPIYASKS 473
K +K SSVP+LFSP S AS VT GSTSGPS RG P YASKS
Sbjct: 477 KMGMKARSSVPTLFSPVRSSSLASSVTPEGSTSGPSFRGTPRYASKS 337
Score = 27.2 bits (53), Expect(3) = 9e-048
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +3 / +3
Query: 612 FTERSWAHLASVSSAYHH 665
F ER+WAH ASV H
Sbjct: 477 FNERTWAHRASVPKLTKH 530
Score = 26.3 bits (51), Expect(3) = 5e-032
Identities = 9/12 (75%), Positives = 12/12 (100%)
Frame = -3 / -1
Query: 646 TDAKCAQLRSVK 611
TDA+CAQ+RS+K
Sbjct: 511 TDARCAQVRSLK 476
>gb|BF256073.3|BF256073 HVSMEf0008K14f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0008K14f, mRNA sequence
Length = 836
Score = 176 bits (379), Expect = 3e-043
Identities = 74/128 (57%), Positives = 90/128 (70%)
Frame = +3 / +2
Query: 360 ICSRTPSQLQIMKQTYYARFGTYLEHDIAHHTSGDHQKLLLAYMGIPRYEGPEVDPTIVT 539
ICS TPSQLQIMKQTY ARFG YLEHDI T GDHQKLLLA +G+PR EGPEVDP+ VT
Sbjct: 2 ICSTTPSQLQIMKQTYRARFGCYLEHDITERTYGDHQKLLLACLGVPRNEGPEVDPSEVT 181
Query: 540 HDAKDLYKAGEKRLGTDEKIFIRVFTERSWAHLASVSSAYHHMYDRKLEKVIKSETSGNF 719
DA++L + G+KR+GTDE+ F+RV +ER W HL + + + LEK ET G +
Sbjct: 182 DDARELCRTGKKRVGTDERAFVRVLSERDWTHLGGGAEGDRGVCAQSLEKAGGRETGGGW 361
Query: 720 EFALLTIL 743
L+ IL
Sbjct: 362 RGGLVAIL 385
Score = 126 bits (270), Expect = 3e-028
Identities = 60/93 (64%), Positives = 68/93 (73%)
Frame = -3 / -3
Query: 637 KCAQLRSVKTRIKIFSSVPSLFSPALYKSFASCVTIVGSTSGPS*RGIPIYASKSFW*SP 458
+C Q RS+ TR K SSVP+LF P + S AS VT GSTSGPS RG P +ASKSF *SP
Sbjct: 279 RCVQSRSLNTRTKARSSVPTLFLPVRHSSLASSVTSEGSTSGPSFRGTPRHASKSF**SP 100
Query: 457 DVW*AMSCSR*VPNLA**VCFIICNCDGVLEHI 359
V MSCSR* PNLA *VCF+IC+CDGV+E I
Sbjct: 99 *VRSVMSCSR*QPNLAR*VCFMICSCDGVVEQI 1
>gb|BF259816.3|BF259816 HVSMEf0020F12f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0020F12f, mRNA sequence
Length = 502
Score = 143 bits (307), Expect = 2e-033
Identities = 61/77 (79%), Positives = 67/77 (87%)
Frame = +3 / +1
Query: 741 LRCAENPAKYFAKLLRKAMKGLGTDDMTLIRVVVTRTEIDMQYIKAEYLKKYKKPLAEAI 920
LRCA+ PAKYFAK+L KAMKGLGT + LIRVVVTRTE+DM+YIK EY KYK LAEAI
Sbjct: 1 LRCADTPAKYFAKVLHKAMKGLGTSNAALIRVVVTRTEVDMKYIKVEYHNKYKGSLAEAI 180
Query: 921 NSETSGNYRTFLLSLVG 971
+SETSGNYRTFLLSLVG
Sbjct: 181 HSETSGNYRTFLLSLVG 231
Score = 107 bits (229), Expect = 1e-022
Identities = 50/76 (65%), Positives = 57/76 (75%)
Frame = -3 / -3
Query: 970 PTSERRNVR*FPDVSELIASANGFLYFFKYSALIYCMSISVLVTTTLISVMSSVPKPFMA 791
PTSERR V *FPDVSE IASA+ LY YS L+Y MS SVLVTTT +S VP+PF+A
Sbjct: 230 PTSERRKVL*FPDVSECIASASDPLYLLWYSTLMYFMSTSVLVTTTRMSAALLVPRPFIA 51
Query: 790 FRKSLAKYFAGFSAHL 743
++LAKYFAG SAHL
Sbjct: 50 LCRTLAKYFAGVSAHL 3
>gb|AL506006.1|AL506006 AL506006 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY01G09T 5',
mRNA sequence
Length = 700
Score = 75.8 bits (159), Expect(3) = 1e-030
Identities = 34/82 (41%), Positives = 51/82 (62%)
Frame = +3 / +1
Query: 354 EIICSRTPSQLQIMKQTYYARFGTYLEHDIAHHTSGDHQKLLLAYMGIPRYEGPEVDPTI 533
EI CSR +QL ++Q Y+ RF LE D+A H +GD +KLL+ + RYEGPEV+ +
Sbjct: 427 EIACSRGSAQLFAVRQAYHDRFKRSLEEDVAAHVTGDFRKLLVPLVSSYRYEGPEVNTRL 606
Query: 534 VTHDAKDLYKAGEKRLGTDEKI 599
+AK L++ E + D++I
Sbjct: 607 AHSEAKILHEKIEHKAYGDDEI 672
Score = 48.7 bits (100), Expect(3) = 1e-030
Identities = 22/53 (41%), Positives = 32/53 (60%)
Frame = +2 / +1
Query: 32 MASLTLPPAPPNPRQDAIDLHKAFKGFGCDSTTGINILTHRDSGQRGLIQQEY 190
MA+L +P P D +L KAF+G+G + I+IL HRD+ QR I++ Y
Sbjct: 106 MATLKVPSNVPALADDCDNLRKAFQGWGTNEALIISILGHRDAAQRRAIRKHY 264
Score = 47.8 bits (98), Expect(3) = 1e-030
Identities = 19/47 (40%), Positives = 29/47 (61%)
Frame = +3 / +1
Query: 174 SFNRNTGSMYHEELSHRISSELSGNHKKAMSLWILDPAGRDATVLRE 314
+ ++ Y EEL I+ E+SG+ ++A+ LW LDPA RDA + E
Sbjct: 247 AIRKHYADTYGEELLRSITDEISGDFERAVILWTLDPAERDAVLANE 387
>gb|BF629785.2|BF629785 HVSMEb0013M23f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0013M23f, mRNA sequence
Length = 811
Score = 59.7 bits (124), Expect(5) = 2e-030
Identities = 27/63 (42%), Positives = 39/63 (61%)
Frame = +2 / +2
Query: 5 SAHAQRLPAMASLTLPPAPPNPRQDAIDLHKAFKGFGCDSTTGINILTHRDSGQRGLIQQ 184
+ H + L +M S+++P R A+ LH+A +GFG +S I+IL HRD+ QR LI
Sbjct: 68 ATHIRILLSMESVSVPAVLACARAHALALHRACEGFG*ESAREIDILAHRDATQRALIMH 247
Query: 185 EYR 193
EYR
Sbjct: 248 EYR 256
Score = 47.3 bits (97), Expect(5) = 2e-030
Identities = 19/39 (48%), Positives = 25/39 (64%)
Frame = +3 / +3
Query: 240 SGNHKKAMSLWILDPAGRDATVLREALNGDTMDLRAATE 356
+G +K +W+LD GRDAT+L +LNG DLRA E
Sbjct: 303 AGTTRKRCCVWVLDRVGRDATILTLSLNGYITDLRACAE 419
Score = 35.9 bits (72), Expect(5) = 2e-030
Identities = 14/22 (63%), Positives = 17/22 (77%)
Frame = +3 / +2
Query: 198 MYHEELSHRISSELSGNHKKAM 263
+YH +L R+S LSGNHKKAM
Sbjct: 260 IYHHDLYLRLSMYLSGNHKKAM 325
Score = 31.8 bits (63), Expect(5) = 2e-030
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3 / +1
Query: 348 ATEIICSRTPSQLQIMKQTYYARFGTYLEHDIA 446
A +ICSRT S + ++ Q Y AR L+ D+A
Sbjct: 412 ARRLICSRTLSHVHMLTQAYRARSRCSLDLDLA 510
Score = 30.9 bits (61), Expect(5) = 2e-030
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +3 / +2
Query: 453 TSGDHQKLLLAYMGIPRYEGPEVD 524
T G L LAY+G+ +EGPEVD
Sbjct: 518 TYGHPHILPLAYLGVHGHEGPEVD 589
>gb|AL502881.1|AL502881 AL502881 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW09A09u 3', mRNA sequence
Length = 658
Score = 116 bits (249), Expect(3) = 4e-030
Identities = 50/58 (86%), Positives = 53/58 (91%)
Frame = +3 / -3
Query: 798 KGLGTDDMTLIRVVVTRTEIDMQYIKAEYLKKYKKPLAEAINSETSGNYRTFLLSLVG 971
K GTDD TL+RVVVTRTEIDMQYIKAEY KKYKKPLA+AI+SETSG YRTFLLSLVG
Sbjct: 500 KVXGTDDKTLVRVVVTRTEIDMQYIKAEYYKKYKKPLADAIHSETSGGYRTFLLSLVG 327
Score = 105 bits (224), Expect(2) = 1e-023
Identities = 51/76 (67%), Positives = 55/76 (72%)
Frame = -3 / +1
Query: 970 PTSERRNVR*FPDVSELIASANGFLYFFKYSALIYCMSISVLVTTTLISVMSSVPKPFMA 791
PT E RNVR* PDVSE IASANGFLYF YSALIYC+SISVLVTTTL SV+SSVP F
Sbjct: 328 PTRESRNVR*PPDVSEWIASANGFLYFL*YSALIYCISISVLVTTTLTSVLSSVPXTFHG 507
Query: 790 FRKSLAKYFAGFSAHL 743
L+K S H+
Sbjct: 508 LP*HLSKILXLDSQHI 555
Score = 29.9 bits (59), Expect(3) = 4e-030
Identities = 11/13 (84%), Positives = 13/13 (100%)
Frame = +3 / -2
Query: 765 KYFAKLLRKAMKG 803
KYFAK+LRK+MKG
Sbjct: 534 KYFAKVLRKSMKG 496
Score = 24.9 bits (48), Expect(2) = 1e-023
Identities = 7/16 (43%), Positives = 13/16 (81%)
Frame = -1 / +2
Query: 1011 ISCPMVET*PNGHDQQ 964
++C ++T*PNG+ Q+
Sbjct: 290 VACTAMDT*PNGYQQE 337
Score = 23.5 bits (45), Expect(3) = 4e-030
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = +3 / -1
Query: 741 LRCAENPAKYF 773
LRCAENPA F
Sbjct: 559 LRCAENPA*VF 527
>gb|CA025160.1|CA025160 HZ51G03r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ51G03
5-PRIME, mRNA sequence
Length = 636
Score = 72.5 bits (152), Expect(3) = 9e-030
Identities = 32/75 (42%), Positives = 47/75 (62%)
Frame = +3 / +3
Query: 354 EIICSRTPSQLQIMKQTYYARFGTYLEHDIAHHTSGDHQKLLLAYMGIPRYEGPEVDPTI 533
EI CSR +QL ++Q Y+ RF LE D+A H +GD +KLL+ + RYEGPEV+ +
Sbjct: 408 EIACSRGSAQLFAVRQAYHDRFKRSLEEDVAAHVTGDFRKLLVPLVSSYRYEGPEVNTRL 587
Query: 534 VTHDAKDLYKAGEKR 578
+AK L++ E +
Sbjct: 588 AHSEAKILHEKIEHK 632
Score = 48.7 bits (100), Expect(3) = 9e-030
Identities = 22/53 (41%), Positives = 32/53 (60%)
Frame = +2 / +3
Query: 32 MASLTLPPAPPNPRQDAIDLHKAFKGFGCDSTTGINILTHRDSGQRGLIQQEY 190
MA+L +P P D +L KAF+G+G + I+IL HRD+ QR I++ Y
Sbjct: 87 MATLKVPSNVPALADDCDNLRKAFQGWGTNEALIISILGHRDAAQRRAIRKHY 245
Score = 47.8 bits (98), Expect(3) = 9e-030
Identities = 19/47 (40%), Positives = 29/47 (61%)
Frame = +3 / +3
Query: 174 SFNRNTGSMYHEELSHRISSELSGNHKKAMSLWILDPAGRDATVLRE 314
+ ++ Y EEL I+ E+SG+ ++A+ LW LDPA RDA + E
Sbjct: 228 AIRKHYADTYGEELLRSITDEISGDFERAVILWTLDPAERDAVLANE 368
>gb|CA020774.1|CA020774 HZ37K18r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ37K18
5-PRIME, mRNA sequence
Length = 618
Score = 71.6 bits (150), Expect(3) = 2e-029
Identities = 31/69 (44%), Positives = 44/69 (63%)
Frame = +3 / +1
Query: 354 EIICSRTPSQLQIMKQTYYARFGTYLEHDIAHHTSGDHQKLLLAYMGIPRYEGPEVDPTI 533
EI CSR +QL ++Q Y+ RF LE D+A H +GD +KLL+ + RYEGPEV+ +
Sbjct: 412 EIACSRGSAQLFAVRQAYHDRFKRSLEEDVAAHVTGDFRKLLVPLVSSYRYEGPEVNTRL 591
Query: 534 VTHDAKDLY 560
+AK L+
Sbjct: 592 AHSEAKILH 618
Score = 48.7 bits (100), Expect(3) = 2e-029
Identities = 22/53 (41%), Positives = 32/53 (60%)
Frame = +2 / +1
Query: 32 MASLTLPPAPPNPRQDAIDLHKAFKGFGCDSTTGINILTHRDSGQRGLIQQEY 190
MA+L +P P D +L KAF+G+G + I+IL HRD+ QR I++ Y
Sbjct: 91 MATLKVPSNVPALADDCDNLRKAFQGWGTNEALIISILGHRDAAQRRAIRKHY 249
Score = 47.8 bits (98), Expect(3) = 2e-029
Identities = 19/47 (40%), Positives = 29/47 (61%)
Frame = +3 / +1
Query: 174 SFNRNTGSMYHEELSHRISSELSGNHKKAMSLWILDPAGRDATVLRE 314
+ ++ Y EEL I+ E+SG+ ++A+ LW LDPA RDA + E
Sbjct: 232 AIRKHYADTYGEELLRSITDEISGDFERAVILWTLDPAERDAVLANE 372
>gb|AL450690.1|AL450690 AL450690 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK03M19u 5', mRNA sequence
Length = 657
Score = 66.6 bits (139), Expect(3) = 5e-028
Identities = 28/57 (49%), Positives = 38/57 (66%)
Frame = +3 / +2
Query: 354 EIICSRTPSQLQIMKQTYYARFGTYLEHDIAHHTSGDHQKLLLAYMGIPRYEGPEVD 524
EI CSR +QL ++Q Y+ RF LE D+A H +GD +KLL+ + RYEGPEV+
Sbjct: 410 EIACSRGSAQLFAVRQAYHDRFKRSLEEDVAAHVTGDFRKLLVPLVSSYRYEGPEVN 580
Score = 48.7 bits (100), Expect(3) = 5e-028
Identities = 22/53 (41%), Positives = 32/53 (60%)
Frame = +2 / +2
Query: 32 MASLTLPPAPPNPRQDAIDLHKAFKGFGCDSTTGINILTHRDSGQRGLIQQEY 190
MA+L +P P D +L KAF+G+G + I+IL HRD+ QR I++ Y
Sbjct: 89 MATLKVPSNVPALADDCDNLRKAFQGWGTNEALIISILGHRDAAQRRAIRKHY 247
Score = 47.8 bits (98), Expect(3) = 5e-028
Identities = 19/47 (40%), Positives = 29/47 (61%)
Frame = +3 / +2
Query: 174 SFNRNTGSMYHEELSHRISSELSGNHKKAMSLWILDPAGRDATVLRE 314
+ ++ Y EEL I+ E+SG+ ++A+ LW LDPA RDA + E
Sbjct: 230 AIRKHYADTYGEELLRSITDEISGDFERAVILWTLDPAERDAVLANE 370
>gb|BI957573.1|BI957573 HVSMEn0010D05f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0010D05f, mRNA sequence
Length = 628
Score = 66.6 bits (139), Expect(3) = 5e-028
Identities = 28/57 (49%), Positives = 38/57 (66%)
Frame = +3 / +1
Query: 354 EIICSRTPSQLQIMKQTYYARFGTYLEHDIAHHTSGDHQKLLLAYMGIPRYEGPEVD 524
EI CSR +QL ++Q Y+ RF LE D+A H +GD +KLL+ + RYEGPEV+
Sbjct: 379 EIACSRGSAQLFAVRQAYHDRFKRSLEEDVAAHVTGDFRKLLVPLVSSYRYEGPEVN 549
Score = 48.7 bits (100), Expect(3) = 5e-028
Identities = 22/53 (41%), Positives = 32/53 (60%)
Frame = +2 / +1
Query: 32 MASLTLPPAPPNPRQDAIDLHKAFKGFGCDSTTGINILTHRDSGQRGLIQQEY 190
MA+L +P P D +L KAF+G+G + I+IL HRD+ QR I++ Y
Sbjct: 58 MATLKVPSNVPALADDCDNLRKAFQGWGTNEALIISILGHRDAAQRRAIRKHY 216
Score = 47.8 bits (98), Expect(3) = 5e-028
Identities = 19/47 (40%), Positives = 29/47 (61%)
Frame = +3 / +1
Query: 174 SFNRNTGSMYHEELSHRISSELSGNHKKAMSLWILDPAGRDATVLRE 314
+ ++ Y EEL I+ E+SG+ ++A+ LW LDPA RDA + E
Sbjct: 199 AIRKHYADTYGEELLRSITDEISGDFERAVILWTLDPAERDAVLANE 339
>gb|BF254331.2|BF254331 HVSMEf0003K19f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0003K19f, mRNA sequence
Length = 524
Score = 86.8 bits (183), Expect(2) = 4e-027
Identities = 39/103 (37%), Positives = 56/103 (54%)
Frame = +3 / +3
Query: 174 SFNRNTGSMYHEELSHRISSELSGNHKKAMSLWILDPAGRDATVLREALNGDTMDLRAAT 353
+ ++ Y EEL I+ E+ G ++A+ W LDPA RDA + E RA
Sbjct: 201 AIRKHYADAYGEELLRSITDEIHGKFERAVIQWTLDPAERDAVLANEEAKKWNPGGRALV 380
Query: 354 EIICSRTPSQLQIMKQTYYARFGTYLEHDIAHHTSGDHQKLLL 482
EI C+RTP+ L KQ Y+ R LE D+A H +GD +KL++
Sbjct: 381 EIACARTPAHLFAAKQAYHDRLKRSLEEDVAAHVTGDFRKLVV 509
Score = 55.6 bits (115), Expect(2) = 4e-027
Identities = 24/55 (43%), Positives = 34/55 (61%)
Frame = +2 / +3
Query: 26 PAMASLTLPPAPPNPRQDAIDLHKAFKGFGCDSTTGINILTHRDSGQRGLIQQEY 190
P MA+L++P A P +D L KAF G+G + I+IL HRD+ QR I++ Y
Sbjct: 54 PEMATLSVPAAVPAVAEDCEQLRKAFAGWGTNERLIISILAHRDAAQRRAIRKHY 218
>gb|BI958463.1|BI958463 HVSMEn0015C15f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0015C15f, mRNA sequence
Length = 656
Score = 76.7 bits (161), Expect(3) = 2e-025
Identities = 37/100 (37%), Positives = 59/100 (59%)
Frame = +3 / +1
Query: 354 EIICSRTPSQLQIMKQTYYARFGTYLEHDIAHHTSGDHQKLLLAYMGIPRYEGPEVDPTI 533
EI CSR +QL ++Q Y+ RF LE D+A H +GD +KLL+ + RYEGPEV+ +
Sbjct: 280 EIACSRGSAQLFAVRQAYHDRFKRSLEEDVAAHVTGDFRKLLVPLVSSYRYEGPEVNTRL 459
Query: 534 VTHDAKDLYKAGEKRLGTDEKIFIRVFTERSWAHLASVSS 653
+AK L++ E + D++I + T LA++++
Sbjct: 460 AHSEAKILHEKIEHKAYGDDEIIRILTTRSKAQLLATLNN 579
Score = 47.8 bits (98), Expect(3) = 2e-025
Identities = 19/47 (40%), Positives = 29/47 (61%)
Frame = +3 / +1
Query: 174 SFNRNTGSMYHEELSHRISSELSGNHKKAMSLWILDPAGRDATVLRE 314
+ ++ Y EEL I+ E+SG+ ++A+ LW LDPA RDA + E
Sbjct: 100 AIRKHYADTYGEELLRSITDEISGDFERAVILWTLDPAERDAVLANE 240
Score = 29.9 bits (59), Expect(3) = 2e-025
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2 / +1
Query: 107 GFGCDSTTGINILTHRDSGQRGLIQQEY 190
G+G + I+IL HRD+ QR I++ Y
Sbjct: 34 GWGTNEALIISILGHRDAAQRRAIRKHY 117
>gb|BU989284.1|BU989284 HF21F01r HF Hordeum vulgare subsp. vulgare cDNA clone HF21F01
5-PRIME, mRNA sequence
Length = 536
Score = 115 bits (245), Expect = 8e-025
Identities = 55/160 (34%), Positives = 87/160 (54%)
Frame = +3 / +3
Query: 174 SFNRNTGSMYHEELSHRISSELSGNHKKAMSLWILDPAGRDATVLREALNGDTMDLRAAT 353
+ ++ Y EEL I+ E+ G ++A+ W LDPA RDA + E RA
Sbjct: 21 AIRKHYADAYGEELLRSITDEIHGKFERAVIQWTLDPAERDAVLANEEAKKWNPGGRALV 200
Query: 354 EIICSRTPSQLQIMKQTYYARFGTYLEHDIAHHTSGDHQKLLLAYMGIPRYEGPEVDPTI 533
EI C+RTP+ L KQ Y+ RF LE D+A H +GD +KLL+ + RY+GPEV+ ++
Sbjct: 201 EIACARTPAHLFAAKQAYHDRFKRSLEEDVAAHVTGDFRKLLVPLVSAYRYDGPEVNTSL 380
Query: 534 VTHDAKDLYKAGEKRLGTDEKIFIRVFTERSWAHLASVSS 653
+AK L+ ++ +D+++ + T LA+ +S
Sbjct: 381 AHSEAKILHAKISEKAYSDDEVVRILTTRSKAQLLATFNS 500
>gb|BU994896.1|BU994896 HM08I11r HM Hordeum vulgare subsp. vulgare cDNA clone HM08I11
5-PRIME, mRNA sequence
Length = 568
Score = 53.8 bits (111), Expect(3) = 3e-024
Identities = 23/51 (45%), Positives = 32/51 (62%)
Frame = +3 / +1
Query: 354 EIICSRTPSQLQIMKQTYYARFGTYLEHDIAHHTSGDHQKLLLAYMGIPRY 506
EI CSR +QL ++Q Y+ RF LE D+A H +GD +KLL+ + RY
Sbjct: 415 EIACSRGSAQLFAVRQAYHDRFKRSLEEDVAAHVTGDFRKLLVPLVSSYRY 567
Score = 48.7 bits (100), Expect(3) = 3e-024
Identities = 22/53 (41%), Positives = 32/53 (60%)
Frame = +2 / +1
Query: 32 MASLTLPPAPPNPRQDAIDLHKAFKGFGCDSTTGINILTHRDSGQRGLIQQEY 190
MA+L +P P D +L KAF+G+G + I+IL HRD+ QR I++ Y
Sbjct: 94 MATLKVPSNVPALADDCDNLRKAFQGWGTNEALIISILGHRDAAQRRAIRKHY 252
Score = 47.8 bits (98), Expect(3) = 3e-024
Identities = 19/47 (40%), Positives = 29/47 (61%)
Frame = +3 / +1
Query: 174 SFNRNTGSMYHEELSHRISSELSGNHKKAMSLWILDPAGRDATVLRE 314
+ ++ Y EEL I+ E+SG+ ++A+ LW LDPA RDA + E
Sbjct: 235 AIRKHYADTYGEELLRSITDEISGDFERAVILWTLDPAERDAVLANE 375
>gb|BM369956.2|BM369956 EBro08_SQ002_H12_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ002_H12 5', mRNA sequence
Length = 586
Score = 112 bits (239), Expect = 5e-024
Identities = 48/125 (38%), Positives = 75/125 (60%)
Frame = +3 / +3
Query: 603 IRVFTERSWAHLASVSSAYHHMYDRKLEKVIKSETSGNFEFALLTILRCAENPAKYFAKL 782
IR+ T RS A L + + Y+ + + K +K++ F L ++RC P +YF K+
Sbjct: 141 IRILTTRSKAQLLATLNNYNDTFGHPITKDLKADPKDEFLKTLRAVIRCFTCPDRYFEKV 320
Query: 783 LRKAMKGLGTDDMTLIRVVVTRTEIDMQYIKAEYLKKYKKPLAEAINSETSGNYRTFLLS 962
R A+ G GTD+ +L RV+ TR E+D++ IK Y K+ PL +A+ +TSG+Y T LL+
Sbjct: 321 ARLAIAGNGTDENSLTRVITTRAEVDLKLIKEAYQKRNSVPLEKAVAGDTSGDYETMLLA 500
Query: 963 LVGHG 977
L+G G
Sbjct: 501 LLGKG 515
>gb|AV921964.1|AV921964 AV921964 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags19d20 3', mRNA sequence
Length = 670
Score = 110 bits (235), Expect = 2e-023
Identities = 47/148 (31%), Positives = 81/148 (54%)
Frame = +3 / -2
Query: 528 TIVTHDAKDLYKAGEKRLGTDEKIFIRVFTERSWAHLASVSSAYHHMYDRKLEKVIKSET 707
T + H + A + +R+ T RS A L + ++Y+ + + K +K +
Sbjct: 540 TSLAHSEAKILHAKISEKAYSDDEVVRILTTRSKAQLLATFNSYNDQFSHPITKDLKEDP 361
Query: 708 SGNFEFALLTILRCAENPAKYFAKLLRKAMKGLGTDDMTLIRVVVTRTEIDMQYIKAEYL 887
F L I+RC P +YF K++R A+ G+GTD+ TL RV+ TR E+D++ IK Y
Sbjct: 360 KDEFLSTLRAIIRCFTCPDRYFEKVIRLALGGVGTDEHTLTRVITTRAEVDLKVIKEAYQ 181
Query: 888 KKYKKPLAEAINSETSGNYRTFLLSLVG 971
K+ PL +A++ +T+ +Y +L+L+G
Sbjct: 180 KRNSVPLEKAVSKDTTRDYEDMMLALLG 97
>gb|CA022440.1|CA022440 HZ43D05r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ43D05
5-PRIME, mRNA sequence
Length = 575
Score = 51.0 bits (105), Expect(3) = 2e-023
Identities = 21/43 (48%), Positives = 29/43 (67%)
Frame = +3 / +2
Query: 354 EIICSRTPSQLQIMKQTYYARFGTYLEHDIAHHTSGDHQKLLL 482
EI CSR +QL ++Q Y+ RF LE D+A H +GD +KLL+
Sbjct: 431 EIACSRGSAQLFAVRQAYHDRFKRSLEEDVAAHVTGDFRKLLV 559
Score = 48.7 bits (100), Expect(3) = 2e-023
Identities = 22/53 (41%), Positives = 32/53 (60%)
Frame = +2 / +2
Query: 32 MASLTLPPAPPNPRQDAIDLHKAFKGFGCDSTTGINILTHRDSGQRGLIQQEY 190
MA+L +P P D +L KAF+G+G + I+IL HRD+ QR I++ Y
Sbjct: 110 MATLKVPSNVPALADDCDNLRKAFQGWGTNEALIISILGHRDAAQRRAIRKHY 268
Score = 47.8 bits (98), Expect(3) = 2e-023
Identities = 19/47 (40%), Positives = 29/47 (61%)
Frame = +3 / +2
Query: 174 SFNRNTGSMYHEELSHRISSELSGNHKKAMSLWILDPAGRDATVLRE 314
+ ++ Y EEL I+ E+SG+ ++A+ LW LDPA RDA + E
Sbjct: 251 AIRKHYADTYGEELLRSITDEISGDFERAVILWTLDPAERDAVLANE 391
>gb|AV926474.1|AV926474 AV926474 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd19i03 5', mRNA sequence
Length = 546
Score = 51.0 bits (105), Expect(3) = 2e-023
Identities = 21/43 (48%), Positives = 29/43 (67%)
Frame = +3 / +2
Query: 354 EIICSRTPSQLQIMKQTYYARFGTYLEHDIAHHTSGDHQKLLL 482
EI CSR +QL ++Q Y+ RF LE D+A H +GD +KLL+
Sbjct: 398 EIACSRGSAQLFAVRQAYHDRFKRSLEEDVAAHVTGDFRKLLV 526
Score = 48.7 bits (100), Expect(3) = 2e-023
Identities = 22/53 (41%), Positives = 32/53 (60%)
Frame = +2 / +2
Query: 32 MASLTLPPAPPNPRQDAIDLHKAFKGFGCDSTTGINILTHRDSGQRGLIQQEY 190
MA+L +P P D +L KAF+G+G + I+IL HRD+ QR I++ Y
Sbjct: 77 MATLKVPSNVPALADDCDNLRKAFQGWGTNEALIISILGHRDAAQRRAIRKHY 235
Score = 47.8 bits (98), Expect(3) = 2e-023
Identities = 19/47 (40%), Positives = 29/47 (61%)
Frame = +3 / +2
Query: 174 SFNRNTGSMYHEELSHRISSELSGNHKKAMSLWILDPAGRDATVLRE 314
+ ++ Y EEL I+ E+SG+ ++A+ LW LDPA RDA + E
Sbjct: 218 AIRKHYADTYGEELLRSITDEISGDFERAVILWTLDPAERDAVLANE 358
>gb|CB881016.1|CB881016 HM08I11w HM Hordeum vulgare subsp. vulgare cDNA clone HM08I11
3-PRIME, mRNA sequence
Length = 700
Score = 110 bits (234), Expect = 3e-023
Identities = 47/123 (38%), Positives = 74/123 (60%)
Frame = +3 / -2
Query: 603 IRVFTERSWAHLASVSSAYHHMYDRKLEKVIKSETSGNFEFALLTILRCAENPAKYFAKL 782
IR+ T RS A L + + Y+ + + K +K++ F L ++RC P +YF K+
Sbjct: 657 IRILTTRSKAQLLATLNNYNDTFGHPITKDLKADPKDEFLKTLRAVIRCFTCPDRYFEKV 478
Query: 783 LRKAMKGLGTDDMTLIRVVVTRTEIDMQYIKAEYLKKYKKPLAEAINSETSGNYRTFLLS 962
R A+ G GTD+ +L RV+ TR E+D++ IK Y K+ PL +A+ +TSG+Y T LL+
Sbjct: 477 ARLAIAGNGTDENSLTRVITTRAEVDLKLIKEAYQKRNSVPLEKAVAGDTSGDYETMLLA 298
Query: 963 LVG 971
L+G
Sbjct: 297 LLG 289
>gb|AL507314.1|AL507314 AL507314 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY01N11V 5',
mRNA sequence
Length = 568
Score = 50.6 bits (104), Expect(3) = 4e-023
Identities = 21/42 (50%), Positives = 28/42 (66%)
Frame = +3 / +3
Query: 354 EIICSRTPSQLQIMKQTYYARFGTYLEHDIAHHTSGDHQKLL 479
EI CSR +QL ++Q Y+ RF LE D+A H +GD +KLL
Sbjct: 399 EIACSRGSAQLFAVRQAYHDRFKRSLEEDVAAHVTGDFRKLL 524
Score = 48.7 bits (100), Expect(3) = 4e-023
Identities = 22/53 (41%), Positives = 32/53 (60%)
Frame = +2 / +3
Query: 32 MASLTLPPAPPNPRQDAIDLHKAFKGFGCDSTTGINILTHRDSGQRGLIQQEY 190
MA+L +P P D +L KAF+G+G + I+IL HRD+ QR I++ Y
Sbjct: 78 MATLKVPSNVPALADDCDNLRKAFQGWGTNEALIISILGHRDAAQRRAIRKHY 236
Score = 47.3 bits (97), Expect(3) = 4e-023
Identities = 19/47 (40%), Positives = 29/47 (61%)
Frame = +3 / +3
Query: 174 SFNRNTGSMYHEELSHRISSELSGNHKKAMSLWILDPAGRDATVLRE 314
+ ++ Y EEL I+ E+SG+ ++A+ LW LDPA RDA + E
Sbjct: 219 AIRKHYADTYGEELLRSITDEISGDFERAVILWTLDPAERDAVLAXE 359
>gb|AJ434640.1|AJ434640 AJ434640 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200019E04F1, mRNA sequence
Length = 397
Score = 108 bits (230), Expect = 9e-023
Identities = 46/122 (37%), Positives = 73/122 (59%)
Frame = +3 / +1
Query: 606 RVFTERSWAHLASVSSAYHHMYDRKLEKVIKSETSGNFEFALLTILRCAENPAKYFAKLL 785
R+ T RS A L + + Y+ + + K +K++ F L ++RC P +YF K+
Sbjct: 1 RILTTRSKAQLLATLNNYNDTFGHPITKDLKADPKDEFLKTLRAVIRCFTCPDRYFEKVA 180
Query: 786 RKAMKGLGTDDMTLIRVVVTRTEIDMQYIKAEYLKKYKKPLAEAINSETSGNYRTFLLSL 965
R A+ G GTD+ +L RV+ TR E+D++ IK Y K+ PL +A+ +TSG+Y T LL+L
Sbjct: 181 RLAIAGNGTDENSLTRVITTRAEVDLKLIKEAYQKRNSVPLEKAVAGDTSGDYETMLLAL 360
Query: 966 VG 971
+G
Sbjct: 361 LG 366
>gb|CV057758.1|CV057758 BNEL30e11 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL30e11 5' similar to annexin p33,
mRNA sequence
Length = 584
Score = 108 bits (230), Expect = 9e-023
Identities = 46/123 (37%), Positives = 73/123 (59%)
Frame = +3 / -3
Query: 603 IRVFTERSWAHLASVSSAYHHMYDRKLEKVIKSETSGNFEFALLTILRCAENPAKYFAKL 782
IR+ T RS L + + Y+ + + K +K++ F L ++RC P +YF K+
Sbjct: 483 IRILTPRSKVQLLATLNNYNDTFGHPITKDLKADPKDEFLKTLRAVIRCFTCPDRYFEKV 304
Query: 783 LRKAMKGLGTDDMTLIRVVVTRTEIDMQYIKAEYLKKYKKPLAEAINSETSGNYRTFLLS 962
R A+ G GTD+ +L RV+ TR E+D++ IK Y K+ PL +A+ +TSG+Y T LL+
Sbjct: 303 ARLAIAGNGTDENSLTRVITTRAEVDLKLIKEAYQKRNSVPLEKAVAGDTSGDYETMLLA 124
Query: 963 LVG 971
L+G
Sbjct: 123 LLG 115
>gb|BU994141.1|BU994141 HM05O05r HM Hordeum vulgare subsp. vulgare cDNA clone HM05O05
5-PRIME, mRNA sequence
Length = 657
Score = 88.1 bits (186), Expect(2) = 1e-022
Identities = 35/85 (41%), Positives = 56/85 (65%)
Frame = +3 / +1
Query: 717 FEFALLTILRCAENPAKYFAKLLRKAMKGLGTDDMTLIRVVVTRTEIDMQYIKAEYLKKY 896
F L I+RC P +YF K++R A+ G+GTD+ TL RV+ TR E+D++ IK Y K+
Sbjct: 244 FLSTLRAIIRCFTCPDRYFEKVIRLALGGVGTDEHTLTRVITTRAEVDLKVIKEAYQKRN 423
Query: 897 KKPLAEAINSETSGNYRTFLLSLVG 971
PL +A++ +T+ +Y +L+L+G
Sbjct: 424 SVPLEKAVSKDTTRDYEDMMLALLG 498
Score = 39.1 bits (79), Expect(2) = 1e-022
Identities = 19/65 (29%), Positives = 37/65 (56%)
Frame = +3 / +2
Query: 459 GDHQKLLLAYMGIPRYEGPEVDPTIVTHDAKDLYKAGEKRLGTDEKIFIRVFTERSWAHL 638
GD +KLL+ + RY+GPEV+ ++ +AK L+ ++ +D+++ + T L
Sbjct: 2 GDFRKLLVPLVSAYRYDGPEVNTSLAHSEAKILHAKISEKAYSDDEVVRILTTRSKAQLL 181
Query: 639 ASVSS 653
A+ +S
Sbjct: 182 ATFNS 196
>gb|CB880806.1|CB880806 HM07O05w HM Hordeum vulgare subsp. vulgare cDNA clone HM07O05
3-PRIME, mRNA sequence
Length = 664
Score = 88.1 bits (186), Expect(2) = 8e-022
Identities = 35/85 (41%), Positives = 56/85 (65%)
Frame = +3 / -1
Query: 717 FEFALLTILRCAENPAKYFAKLLRKAMKGLGTDDMTLIRVVVTRTEIDMQYIKAEYLKKY 896
F L I+RC P +YF K++R A+ G+GTD+ TL RV+ TR E+D++ IK Y K+
Sbjct: 424 FLSTLRAIIRCFTCPDRYFEKVIRLALGGVGTDEHTLTRVITTRAEVDLKVIKEAYQKRN 245
Query: 897 KKPLAEAINSETSGNYRTFLLSLVG 971
PL +A++ +T+ +Y +L+L+G
Sbjct: 244 SVPLEKAVSKDTTRDYEDMMLALLG 170
Score = 36.3 bits (73), Expect(2) = 8e-022
Identities = 18/64 (28%), Positives = 36/64 (56%)
Frame = +3 / -2
Query: 462 DHQKLLLAYMGIPRYEGPEVDPTIVTHDAKDLYKAGEKRLGTDEKIFIRVFTERSWAHLA 641
D +KLL+ + RY+GPEV+ ++ +AK L+ ++ +D+++ + T LA
Sbjct: 663 DFRKLLVPLVSAYRYDGPEVNTSLAHSEAKILHAKISEKAYSDDEVVRILTTRSKAQLLA 484
Query: 642 SVSS 653
+ +S
Sbjct: 483 TFNS 472
>gb|AL509313.1|AL509313 AL509313 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY01G09u 3',
mRNA sequence
Length = 636
Score = 104 bits (222), Expect = 1e-021
Identities = 45/119 (37%), Positives = 71/119 (59%)
Frame = +3 / -3
Query: 615 TERSWAHLASVSSAYHHMYDRKLEKVIKSETSGNFEFALLTILRCAENPAKYFAKLLRKA 794
T RS A L + + Y+ + + K +K++ F L ++RC P +YF K+ R A
Sbjct: 517 TTRSKAQLLATLNNYNDTFGHPITKDLKADPKDEFLKTLRAVIRCFTCPDRYFEKVARLA 338
Query: 795 MKGLGTDDMTLIRVVVTRTEIDMQYIKAEYLKKYKKPLAEAINSETSGNYRTFLLSLVG 971
+ G GTD+ +L RV+ TR E+D++ IK Y K+ PL +A+ +TSG+Y T LL+L+G
Sbjct: 337 IAGNGTDENSLTRVITTRAEVDLKLIKEAYQKRNSVPLEKAVAGDTSGDYETMLLALLG 161
>gb|BU966781.1|BU966781 HB02F11r BC Hordeum vulgare subsp. vulgare cDNA clone HB02F11
5-PRIME, mRNA sequence
Length = 490
Score = 104 bits (222), Expect = 1e-021
Identities = 45/119 (37%), Positives = 70/119 (58%)
Frame = +3 / +2
Query: 603 IRVFTERSWAHLASVSSAYHHMYDRKLEKVIKSETSGNFEFALLTILRCAENPAKYFAKL 782
IR+ T RS A L + + Y+ + + K +K++ F L ++RC P +YF K+
Sbjct: 134 IRILTTRSKAQLLATLNNYNDTFGHPITKDLKADPKDEFLKTLRAVIRCFTCPDRYFEKV 313
Query: 783 LRKAMKGLGTDDMTLIRVVVTRTEIDMQYIKAEYLKKYKKPLAEAINSETSGNYRTFLL 959
R A+ G GTD+ +L RV+ TR E+D++ IK Y K+ PL +A+ +TSG+Y T LL
Sbjct: 314 ARLAIAGNGTDENSLTRVITTRAEVDLKLIKEAYQKRNSVPLEKAVAGDTSGDYETMLL 490
>gb|CA017988.1|CA017988 HV07B03r HV Hordeum vulgare subsp. vulgare cDNA clone HV07B03
5-PRIME, mRNA sequence
Length = 530
Score = 82.6 bits (174), Expect(2) = 2e-021
Identities = 38/104 (36%), Positives = 61/104 (58%)
Frame = +3 / +3
Query: 342 RAATEIICSRTPSQLQIMKQTYYARFGTYLEHDIAHHTSGDHQKLLLAYMGIPRYEGPEV 521
RA EI C+RTP+ L KQ Y+ RF LE D+A H +GD +KLL+ + RY+GPEV
Sbjct: 135 RALVEIACARTPAHLFAAKQAYHDRFKRSLEEDVAAHVTGDFRKLLVPLVSAYRYDGPEV 314
Query: 522 DPTIVTHDAKDLYKAGEKRLGTDEKIFIRVFTERSWAHLASVSS 653
+ ++ +AK L+ ++ +D+++ + T LA+ +S
Sbjct: 315 NTSLAHSEAKILHAKISEKAYSDDEVVRILTTRSKAQLLATFNS 446
Score = 40.5 bits (82), Expect(2) = 2e-021
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = +3 / +1
Query: 207 EELSHRISSELSGNHKKAMSLWILDPAGRDATVLREALNGDT 332
EEL I+ E+ G ++A+ W LDPA RDA + E T
Sbjct: 1 EELLRSITDEIHGKFERAVIQWTLDPAERDAVLANEEARSGT 126
>gb|CA026993.1|CA026993 HZ57J07r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ57J07
5-PRIME, mRNA sequence
Length = 387
Score = 103 bits (220), Expect = 2e-021
Identities = 46/119 (38%), Positives = 70/119 (58%)
Frame = +3 / +1
Query: 243 GNHKKAMSLWILDPAGRDATVLREALNGDTMDLRAATEIICSRTPSQLQIMKQTYYARFG 422
G ++A+ W LDPA RDA + E T RA EI C+RTP+ L KQ Y+ RF
Sbjct: 10 GKFERAVIQWTLDPAERDAVLANEEAKKWTPGGRALVEIACARTPAHLFAAKQAYHDRFK 189
Query: 423 TYLEHDIAHHTSGDHQKLLLAYMGIPRYEGPEVDPTIVTHDAKDLYKAGEKRLGTDEKI 599
LE D+A H +GD +KLL+ + RY+GPEV+ ++ +AK L+ ++ +D+++
Sbjct: 190 RSLEEDVAAHVTGDFRKLLVPLVSAYRYDGPEVNTSLAHSEAKILHAKISEKAYSDDEV 366
>gb|BQ459544.1|BQ459544 HA08M15r HA Hordeum vulgare subsp. vulgare cDNA clone HA08M15
5-PRIME, mRNA sequence
Length = 632
Score = 102 bits (218), Expect = 4e-021
Identities = 44/118 (37%), Positives = 69/118 (58%)
Frame = +3 / +2
Query: 603 IRVFTERSWAHLASVSSAYHHMYDRKLEKVIKSETSGNFEFALLTILRCAENPAKYFAKL 782
IR+ T RS A L + + Y+ + + K +K++ F L ++RC P +YF K+
Sbjct: 278 IRILTTRSKAQLLATLNNYNDTFGHPITKDLKADPKDEFLKTLRAVIRCFTCPDRYFEKV 457
Query: 783 LRKAMKGLGTDDMTLIRVVVTRTEIDMQYIKAEYLKKYKKPLAEAINSETSGNYRTFL 956
R A+ G GTD+ +L RV+ TR E+D++ IK Y K+ PL +A+ +TSG+Y T L
Sbjct: 458 ARLAIAGNGTDENSLTRVITTRAEVDLKLIKEAYQKRNSVPLEKAVAGDTSGDYETML 631
>gb|BF253867.2|BF253867 HVSMEf0002F12f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0002F12f, mRNA sequence
Length = 862
Score = 78.5 bits (165), Expect(2) = 5e-021
Identities = 35/104 (33%), Positives = 58/104 (55%)
Frame = +3 / +3
Query: 603 IRVFTERSWAHLASVSSAYHHMYDRKLEKVIKSETSGNFEFALLTILRCAENPAKYFAKL 782
IR+ T RS A L + + Y+ + + K +K++ F L ++RC P +YF K+
Sbjct: 444 IRILTTRSKAQLLATLNNYNDTFGHPITKDLKADPKDEFLKTLRAVIRCFTCPDRYFEKV 623
Query: 783 LRKAMKGLGTDDMTLIRVVVTRTEIDMQYIKAEYLKKYKKPLAE 914
R A+ GTD+ +L RV+ TR E+D++ IK K+ + PL +
Sbjct: 624 ARLAIARNGTDENSLTRVITTRAEVDLKLIKEASQKRNRVPLGK 755
Score = 46.9 bits (96), Expect(2) = 5e-021
Identities = 22/55 (40%), Positives = 33/55 (60%)
Frame = +2 / +3
Query: 32 MASLTLPPAPPNPRQDAIDLHKAFKGFGCDSTTGINILTHRDSGQRGLIQQEYRV 196
MA+L +P P D +L KAF+G+G + I+IL HRD+ QR I++ + V
Sbjct: 75 MATLKVPSNVPALADDCDNLRKAFQGWGTNEALIISILGHRDAAQRRAIRKLFAV 239
>gb|BG309045.2|BG309045 HVSMEc0001K22f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0001K22f, mRNA sequence
Length = 862
Score = 62.0 bits (129), Expect(3) = 7e-021
Identities = 29/66 (43%), Positives = 39/66 (59%)
Frame = +3 / +2
Query: 354 EIICSRTPSQLQIMKQTYYARFGTYLEHDIAHHTSGDHQKLLLAYMGIPRYEGPEVDPTI 533
EI CSR +QL ++Q Y+ RF LE D H +GD +KLL+ RYEGPEV+ +
Sbjct: 398 EIACSRGSAQLFAVRQAYHDRFKRSLEEDGPAHVTGDLRKLLVPLGSSYRYEGPEVNTRL 577
Query: 534 VTHDAK 551
+AK
Sbjct: 578 AHSEAK 595
Score = 47.8 bits (98), Expect(3) = 7e-021
Identities = 19/47 (40%), Positives = 29/47 (61%)
Frame = +3 / +2
Query: 174 SFNRNTGSMYHEELSHRISSELSGNHKKAMSLWILDPAGRDATVLRE 314
+ ++ Y EEL I+ E+SG+ ++A+ LW LDPA RDA + E
Sbjct: 218 AIRKHYADTYGEELLRSITDEISGDFERAVILWTLDPAERDAVLANE 358
Score = 29.0 bits (57), Expect(3) = 7e-021
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +1 / +2
Query: 13 RAATAGDGEPHPAAGAPQPTPGRHRPPQGLQRV 111
R A DG+ P+P +PPQGL RV
Sbjct: 56 RQAPGPDGDAQGPLQRPRPRRRLRQPPQGLPRV 154
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 701,099,165
Number of Sequences: 312970
Number of extensions: 11320324
Number of successful extensions: 86715
Number of sequences better than 1.0e-020: 49
length of database: 58,378,179
effective HSP length: 53
effective length of database: 41,790,769
effective search space used: 18262566053
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)