TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3696569.2.1
(1022 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF621546.3|BF621546 HVSMEa0011F20f Hordeum vulgare seedl... 408 e-113
gb|CA001705.1|CA001705 HS05F12r HS Hordeum vulgare subsp. v... 393 e-109
gb|CA006626.1|CA006626 HU05D17r HU Hordeum vulgare subsp. v... 267 9e-096
gb|BF626312.1|BF626312 HVSMEa0018F04f Hordeum vulgare seedl... 250 1e-090
gb|BF622346.3|BF622346 HVSMEa0002O08f Hordeum vulgare seedl... 324 5e-090
gb|BI960235.1|BI960235 HVSMEn0023N12f Hordeum vulgare rachi... 237 3e-088
gb|BJ454545.1|BJ454545 BJ454545 K. Sato unpublished cDNA li... 311 5e-084
gb|BI958334.1|BI958334 HVSMEn0014H08f Hordeum vulgare rachi... 223 1e-082
gb|BJ462348.1|BJ462348 BJ462348 K. Sato unpublished cDNA li... 299 1e-080
gb|BF253497.3|BF253497 HVSMEf0001B16f Hordeum vulgare seedl... 225 3e-079
gb|BQ768669.1|BQ768669 EBro08_SQ012_H11_R root, 3 week, dro... 212 4e-079
gb|BQ760682.1|BQ760682 EBro03_SQ003_C23_R root, 3 week, wat... 182 4e-077
gb|BQ465629.1|BQ465629 HU04D11r HU Hordeum vulgare subsp. v... 286 1e-076
gb|CA031352.1|CA031352 HX09L09r HX Hordeum vulgare subsp. v... 200 4e-076
gb|CA023510.1|CA023510 HZ46H12r HZ Hordeum vulgare subsp. v... 265 5e-076
gb|CA005047.1|CA005047 HU12E04u HU Hordeum vulgare subsp. v... 280 8e-075
gb|CA024803.1|CA024803 HZ50F17r HZ Hordeum vulgare subsp. v... 200 3e-074
gb|BI957345.1|BI957345 HVSMEn0009B08f Hordeum vulgare rachi... 200 1e-069
gb|BE215000.1|BE215000 HV_CEb0005H19f Hordeum vulgare seedl... 174 3e-069
gb|BG368613.1|BG368613 HVSMEi0019P07f Hordeum vulgare 20 DA... 254 7e-069
gb|BF256452.2|BF256452 HVSMEf0010A02f Hordeum vulgare seedl... 191 2e-068
gb|BI957392.1|BI957392 HVSMEn0009F06f Hordeum vulgare rachi... 174 3e-067
gb|AL503556.1|AL503556 AL503556 Hordeum vulgare Barke roots... 116 4e-065
gb|BF065271.3|BF065271 HV_CEb0024O07f Hordeum vulgare seedl... 93 9e-065
gb|CA022537.1|CA022537 HZ43I17r HZ Hordeum vulgare subsp. v... 246 1e-064
gb|AV917412.1|AV917412 AV917412 K. Sato unpublished cDNA li... 234 2e-064
gb|BF619242.3|BF619242 HVSMEc0015J01f Hordeum vulgare seedl... 246 2e-064
gb|BQ766646.1|BQ766646 EBro08_SQ006_P15_R root, 3 week, dro... 244 5e-064
gb|BQ766938.1|BQ766938 EBro08_SQ007_D18_R root, 3 week, dro... 177 2e-063
gb|CA025602.1|CA025602 HZ52K01r HZ Hordeum vulgare subsp. v... 180 5e-061
gb|BU989542.1|BU989542 HF22A11r HF Hordeum vulgare subsp. v... 204 5e-058
gb|BU990552.1|BU990552 HF25G07r HF Hordeum vulgare subsp. v... 204 5e-058
gb|BG368084.2|BG368084 HVSMEi0015J17f Hordeum vulgare 20 DA... 147 2e-057
gb|BU990530.1|BU990530 HF25F05r HF Hordeum vulgare subsp. v... 221 4e-057
gb|CA017681.1|CA017681 HV05O14r HV Hordeum vulgare subsp. v... 138 1e-056
gb|BU989257.1|BU989257 HF21D19r HF Hordeum vulgare subsp. v... 204 2e-055
gb|CA017256.1|CA017256 HV14F10u HV Hordeum vulgare subsp. v... 215 4e-055
gb|BI953531.1|BI953531 HVSMEm0013B19f Hordeum vulgare green... 212 2e-054
gb|BI777322.2|BI777322 EBro03_SQ002_N24_R root, 3 week, wat... 203 2e-051
gb|BQ461074.1|BQ461074 HE01E19r HE Hordeum vulgare subsp. v... 172 2e-051
gb|BQ663324.1|BQ663324 HU02C09u HU Hordeum vulgare subsp. v... 117 9e-051
gb|BF257120.2|BF257120 HVSMEf0011O18f Hordeum vulgare seedl... 115 4e-050
gb|CK124288.1|CK124288 BES1824108e08 BES1824 Hordeum vulgar... 155 4e-049
gb|AV916436.1|AV916436 AV916436 K. Sato unpublished cDNA li... 189 2e-047
gb|AV922591.1|AV922591 AV922591 K. Sato unpublished cDNA li... 177 4e-047
gb|BI779583.2|BI779583 EBro01_SQ004_H20_R root, 3 week, hyd... 120 6e-047
gb|BQ762357.1|BQ762357 EBro01_SQ005_H18_R root, 3 week, hyd... 183 1e-045
gb|CA009609.1|CA009609 HU14J18r HU Hordeum vulgare subsp. v... 103 2e-044
gb|AV913816.1|AV913816 AV913816 K. Sato unpublished cDNA li... 113 1e-043
gb|BJ464959.1|BJ464959 BJ464959 K. Sato unpublished cDNA li... 113 1e-043
gb|CA025455.1|CA025455 HZ52D12r HZ Hordeum vulgare subsp. v... 156 2e-041
gb|BI957701.1|BI957701 HVSMEn0010L18f Hordeum vulgare rachi... 95 7e-039
gb|BI951147.1|BI951147 HVSMEl0024K11f Hordeum vulgare spike... 160 8e-039
gb|BF629000.2|BF629000 HVSMEb0009I04f Hordeum vulgare seedl... 95 5e-038
gb|AL505514.1|AL505514 AL505514 Hordeum vulgare Barke roots... 101 3e-037
gb|BF260514.2|BF260514 HVSMEf0022D10f Hordeum vulgare seedl... 93 9e-035
gb|BQ461095.1|BQ461095 HE01D18r HE Hordeum vulgare subsp. v... 113 8e-034
gb|BU980607.1|BU980607 HA21C12r HA Hordeum vulgare subsp. v... 102 4e-033
gb|BQ463996.1|BQ463996 HF01B01T HF Hordeum vulgare subsp. v... 134 1e-032
gb|AL501964.1|AL501964 AL501964 Hordeum vulgare Barke roots... 140 1e-032
gb|BG300056.1|BG300056 HVSMEb0011D11f Hordeum vulgare seedl... 97 2e-032
gb|BJ468536.1|BJ468536 BJ468536 K. Sato unpublished cDNA li... 137 9e-032
gb|BI950759.1|BI950759 HVSMEl0023B18f Hordeum vulgare spike... 100 1e-030
gb|AV921430.1|AV921430 AV921430 K. Sato unpublished cDNA li... 79 1e-030
gb|BI956638.1|BI956638 HVSMEn0004I04f Hordeum vulgare rachi... 103 4e-030
emb|AJ234766.1|HVU234766 Hordeum vulgare genomic DNA fragme... 90 1e-029
gb|BJ465292.1|BJ465292 BJ465292 K. Sato unpublished cDNA li... 122 4e-027
gb|BQ765644.1|BQ765644 EBro03_SQ007_C21_R root, 3 week, wat... 88 3e-024
gb|BQ760589.1|BQ760589 EBro03_SQ001_N06_R root, 3 week, wat... 80 2e-023
gb|BQ468086.1|BQ468086 HR01O13r HR Hordeum vulgare subsp. v... 88 3e-023
gb|BG343293.2|BG343293 HVSMEg0005F10f Hordeum vulgare pre-a... 79 4e-023
gb|BI959362.1|BI959362 HVSMEn0019G01f Hordeum vulgare rachi... 92 6e-023
gb|CA029290.1|CA029290 HZ64M12r HZ Hordeum vulgare subsp. v... 102 3e-021
>gb|BF621546.3|BF621546 HVSMEa0011F20f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0011F20f, mRNA sequence
Length = 825
Score = 408 bits (885), Expect = e-113
Identities = 159/194 (81%), Positives = 171/194 (88%)
Frame = +3 / +3
Query: 66 TTGGACGYGNLYSTGYGTSTAALSTALFNDGAACGSCYELRCDNDGRWCLPGTITVTATN 245
T GGACGYGNLYSTGYGT+TAALSTALFNDGAACGSCYELRCDN G C PG+I VTATN
Sbjct: 231 TMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELRCDNAGSSCRPGSIMVTATN 410
Query: 246 FCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLRIAQYRAGIVPVAFRRVPCVKKGGIRFTI 425
FCPPNYGLPSDDGGWCNPPRPHFDMAEPAFL IAQYRAGIVPV++RRVPCVKKGGIRFTI
Sbjct: 411 FCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLHIAQYRAGIVPVSYRRVPCVKKGGIRFTI 590
Query: 426 NGHSYFNLVLVTNVAGAGDVRSVSIRGSRTGWQPMSRNWGQNWQSNSYLDRQALSFQVTA 605
NGHSYFNLVLVTNV GAGD RSV I+G+RTGWQ MSRNWG NWQSN++L RQ LSF+VT+
Sbjct: 591 NGHSYFNLVLVTNVXGAGDARSVFIKGTRTGWQAMSRNWGMNWQSNTFLGRQCLSFKVTS 770
Query: 606 SDGRTVTSNGAVPA 647
D + + PA
Sbjct: 771 RDXXPLPATPPRPA 812
Score = 270 bits (583), Expect(2) = 8e-074
Identities = 123/162 (75%), Positives = 124/162 (76%)
Frame = -2 / -3
Query: 610 SLAVTWNESACLSRYELLCQFWPQFRDMGCHPVREPRMETERTSPAPATLVTSTRLK*EC 431
SL VT E R LLCQF PQ RDM C PVR P M TER SPAP TLVTSTRLK*E
Sbjct: 775 SLEVTLKERHWRPRKVLLCQFMPQLRDMACQPVRVPLMNTERASPAPXTLVTSTRLK*EW 596
Query: 430 PLMVNRMPPFFTHGTLLNATGTMPARYCAMRRKAGSAMSKCGRGGLHQPPSSLGRP*LGG 251
PLMVNRMPPFFTHGTLL TGTMPARYCAM RKAGSAMSK GRGGLHQPPSSLGRP*LGG
Sbjct: 595 PLMVNRMPPFFTHGTLL*ETGTMPARYCAMWRKAGSAMSKWGRGGLHQPPSSLGRP*LGG 416
Query: 250 QKLVAVTVMVPGXXXXXXXXXXXX*QDPHAAPSLNSAVLSAA 125
QKLVAVT+M PG * DPHAAPSLNSAVLSAA
Sbjct: 415 QKLVAVTMMDPGRHELPALSQRSS*HDPHAAPSLNSAVLSAA 290
Score = 55.6 bits (115), Expect(4) = 9e-030
Identities = 24/42 (57%), Positives = 25/42 (59%)
Frame = +2 / +2
Query: 317 HGRAGLPXXXXXXXXXXXXXXQESAVREEGRHPVHHQRALLL 442
HGRAGLP Q+ AVREEG HPVHHQR LLL
Sbjct: 482 HGRAGLPPHRAVPRRHRTRLLQKGAVREEGGHPVHHQRPLLL 607
Score = 52.4 bits (108), Expect(4) = 9e-030
Identities = 19/28 (67%), Positives = 19/28 (67%)
Frame = +1 / +1
Query: 448 WCW*PTWRAPATCAPSPSGAPARGGSPC 531
WCW*PTW APAT AP S A A G PC
Sbjct: 613 WCW*PTWXAPATRAPCSSKARAPAGKPC 696
Score = 48.3 bits (99), Expect(4) = 9e-030
Identities = 19/24 (79%), Positives = 20/24 (83%)
Frame = +2 / +2
Query: 68 DRRRLRVRQPVQHGVRHEHGGAEH 139
D R +RVR PVQH VRHEHGGAEH
Sbjct: 233 DGRGVRVR*PVQHWVRHEHGGAEH 304
Score = 35.0 bits (70), Expect(4) = 9e-030
Identities = 15/27 (55%), Positives = 20/27 (74%)
Frame = +2 / +2
Query: 518 VAAHVPELGPELAEQLVPGQAGALVPG 598
+A+HVP+LG ELAEQ +PG L+ G
Sbjct: 683 LASHVPQLGHELAEQHLPGTPVPLL*G 763
Score = 28.1 bits (55), Expect(2) = 8e-074
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = -2 / -1
Query: 655 CQPAGTAPLLVTVR 614
CQP G A LLVTVR
Sbjct: 819 CQPPGAAALLVTVR 778
>gb|CA001705.1|CA001705 HS05F12r HS Hordeum vulgare subsp. vulgare cDNA clone HS05F12
5-PRIME, mRNA sequence
Length = 520
Score = 393 bits (853), Expect = e-109
Identities = 151/169 (89%), Positives = 159/169 (94%)
Frame = +3 / +1
Query: 66 TTGGACGYGNLYSTGYGTSTAALSTALFNDGAACGSCYELRCDNDGRWCLPGTITVTATN 245
T GGACGYGNLYSTGYGT+TAALSTALFNDGAACGSCYELRCDN G C PG+I VTATN
Sbjct: 13 TMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELRCDNAGSSCRPGSIMVTATN 192
Query: 246 FCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLRIAQYRAGIVPVAFRRVPCVKKGGIRFTI 425
FCPPNYGLPSDDGGWCNPPRPHFDMAEPAFL IAQYRAGIVPV++RRVPCVKKGGIRFTI
Sbjct: 193 FCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLHIAQYRAGIVPVSYRRVPCVKKGGIRFTI 372
Query: 426 NGHSYFNLVLVTNVAGAGDVRSVSIRGSRTGWQPMSRNWGQNWQSNSYL 572
NGHSYFNLVLVTNVAGAGD RSVSI+G+RTGWQ MSRNWG NWQSN++L
Sbjct: 373 NGHSYFNLVLVTNVAGAGDARSVSIKGTRTGWQAMSRNWGMNWQSNTFL 519
Score = 267 bits (578), Expect = 6e-071
Identities = 119/149 (79%), Positives = 121/149 (81%)
Frame = -2 / -3
Query: 571 RYELLCQFWPQFRDMGCHPVREPRMETERTSPAPATLVTSTRLK*ECPLMVNRMPPFFTH 392
R LLCQF PQ RDM C PVR P M+TER SPAPATLVTSTRLK*E PLMVNRMPPFFTH
Sbjct: 518 RKVLLCQFMPQLRDMACQPVRVPLMDTERASPAPATLVTSTRLK*EWPLMVNRMPPFFTH 339
Query: 391 GTLLNATGTMPARYCAMRRKAGSAMSKCGRGGLHQPPSSLGRP*LGGQKLVAVTVMVPGX 212
GTLL TGTMPARYCAM RKAGSAMSK GRGGLHQPPSSLGRP*LGGQKLVAVT+M PG
Sbjct: 338 GTLL*ETGTMPARYCAMWRKAGSAMSKWGRGGLHQPPSSLGRP*LGGQKLVAVTMMDPGR 159
Query: 211 XXXXXXXXXXX*QDPHAAPSLNSAVLSAA 125
* DPHAAPSLNSAVLSAA
Sbjct: 158 HELPALSQRSS*HDPHAAPSLNSAVLSAA 72
Score = 97.7 bits (207), Expect(2) = 5e-022
Identities = 45/72 (62%), Positives = 46/72 (63%)
Frame = -1 / -2
Query: 533 GHGLPPRAGAPDGDGAHVAGARXXXXXXXXXXXXXVDGEPDAALLHARHSPERDGHDAGA 354
GHGLP A A DG GA VAGA VDGEPDA LLHARH DG+DAGA
Sbjct: 480 GHGLPAGARALDGHGARVAGAGHVGHQHQVEVGVAVDGEPDAPLLHARHPSVGDGYDAGA 301
Query: 353 VLRDAEEGRLGH 318
VLRD EEGRLGH
Sbjct: 300 VLRDVEEGRLGH 265
Score = 55.6 bits (115), Expect(4) = 4e-030
Identities = 24/42 (57%), Positives = 25/42 (59%)
Frame = +2 / +3
Query: 317 HGRAGLPXXXXXXXXXXXXXXQESAVREEGRHPVHHQRALLL 442
HGRAGLP Q+ AVREEG HPVHHQR LLL
Sbjct: 264 HGRAGLPPHRAVPRRHRTRLLQKGAVREEGGHPVHHQRPLLL 389
Score = 55.1 bits (114), Expect(4) = 4e-030
Identities = 20/28 (71%), Positives = 20/28 (71%)
Frame = +1 / +2
Query: 448 WCW*PTWRAPATCAPSPSGAPARGGSPC 531
WCW*PTW APAT AP PS A A G PC
Sbjct: 395 WCW*PTWPAPATRAPCPSRARAPAGRPC 478
Score = 48.3 bits (99), Expect(4) = 4e-030
Identities = 19/24 (79%), Positives = 20/24 (83%)
Frame = +2 / +3
Query: 68 DRRRLRVRQPVQHGVRHEHGGAEH 139
D R +RVR PVQH VRHEHGGAEH
Sbjct: 15 DGRGVRVR*PVQHWVRHEHGGAEH 86
Score = 31.3 bits (62), Expect(4) = 4e-030
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = +2 / +3
Query: 518 VAAHVPELGPELAEQLVP 571
+A HVP+LG ELAEQ +P
Sbjct: 465 LAGHVPQLGHELAEQHLP 518
Score = 26.7 bits (52), Expect(2) = 5e-022
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = -3 / -1
Query: 318 CRSAGAAGCT 289
CRS GAAGCT
Sbjct: 265 CRSGGAAGCT 236
>gb|CA006626.1|CA006626 HU05D17r HU Hordeum vulgare subsp. vulgare cDNA clone HU05D17
5-PRIME, mRNA sequence
Length = 534
Score = 267 bits (578), Expect(2) = 9e-096
Identities = 100/121 (82%), Positives = 112/121 (92%)
Frame = +3 / +3
Query: 201 GRWCLPGTITVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLRIAQYRAGIVPVAF 380
G C+PG+IT+TATN CPPNY LP+DDGGWCNPPR HFDMAEPA+L+I YRAGIVPV++
Sbjct: 171 GSSCVPGSITITATNLCPPNYALPNDDGGWCNPPRAHFDMAEPAYLQIGIYRAGIVPVSY 350
Query: 381 RRVPCVKKGGIRFTINGHSYFNLVLVTNVAGAGDVRSVSIRGSRTGWQPMSRNWGQNWQS 560
RRVPCVKKGG+RFTINGHSYFNLVLVTNVAGAGDV+SVSI+GS +GWQ MSRNWGQNWQS
Sbjct: 351 RRVPCVKKGGMRFTINGHSYFNLVLVTNVAGAGDVQSVSIKGSSSGWQAMSRNWGQNWQS 530
Query: 561 N 563
N
Sbjct: 531 N 533
Score = 201 bits (434), Expect(2) = 2e-056
Identities = 88/116 (75%), Positives = 94/116 (81%)
Frame = -2 / -3
Query: 562 LLCQFWPQFRDMGCHPVREPRMETERTSPAPATLVTSTRLK*ECPLMVNRMPPFFTHGTL 383
LLCQFWPQ RDM CHP +P MET+ TSPAPATLVTSTRLK*E PLMVN +PPFFT GTL
Sbjct: 532 LLCQFWPQLRDMACHPELDPLMETDCTSPAPATLVTSTRLK*EWPLMVNLIPPFFTQGTL 353
Query: 382 LNATGTMPARYCAMRRKAGSAMSKCGRGGLHQPPSSLGRP*LGGQKLVAVTVMVPG 215
TGTMPAR + R AGSAMSK RGGLHQPPSSLG *LGGQ+LVAV VM+PG
Sbjct: 352 R*ETGTMPAR*IPIWR*AGSAMSKWARGGLHQPPSSLGSA*LGGQRLVAVMVMLPG 185
Score = 103 bits (220), Expect(2) = 9e-096
Identities = 39/42 (92%), Positives = 41/42 (97%)
Frame = +3 / +3
Query: 66 TTGGACGYGNLYSTGYGTSTAALSTALFNDGAACGSCYELRC 191
T GGACGYGNLYSTGYGT+TAALSTALFNDGAACGSCYEL+C
Sbjct: 42 TMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELKC 167
Score = 60.6 bits (126), Expect(4) = 1e-027
Identities = 21/28 (75%), Positives = 22/28 (78%)
Frame = +1 / +1
Query: 448 WCW*PTWRAPATCAPSPSGAPARGGSPC 531
WC *PTW APATC+PSPS PA GG PC
Sbjct: 418 WCL*PTWPAPATCSPSPSRGPAPGGRPC 501
Score = 53.3 bits (110), Expect(4) = 1e-027
Identities = 18/22 (81%), Positives = 22/22 (100%)
Frame = +2 / +2
Query: 74 RRLRVRQPVQHGVRHEHGGAEH 139
RR+R+R+PVQHG+RHEHGGAEH
Sbjct: 50 RRVRLREPVQHGLRHEHGGAEH 115
Score = 38.6 bits (78), Expect(2) = 2e-056
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = -2 / -3
Query: 172 DPHAAPSLNSAVLSAA 125
DPHAAPSLNSAVLSAA
Sbjct: 148 DPHAAPSLNSAVLSAA 101
Score = 34.5 bits (69), Expect(4) = 1e-027
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +2 / +2
Query: 518 VAAHVPELGPELAEQ 562
VA HVP+LGPELAEQ
Sbjct: 488 VAGHVPQLGPELAEQ 532
Score = 33.6 bits (67), Expect(4) = 1e-027
Identities = 14/20 (70%), Positives = 15/20 (75%)
Frame = +2 / +2
Query: 383 ESAVREEGRHPVHHQRALLL 442
E A+ EEGR VHHQR LLL
Sbjct: 353 EGALCEEGRDEVHHQRPLLL 412
>gb|BF626312.1|BF626312 HVSMEa0018F04f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0018F04f, mRNA sequence
Length = 773
Score = 250 bits (541), Expect(2) = 1e-090
Identities = 94/118 (79%), Positives = 106/118 (89%)
Frame = +3 / +1
Query: 201 GRWCLPGTITVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLRIAQYRAGIVPVAF 380
G C+PG+IT+TATN CPPNY LP+DDGGWCNPPR H DMAEPA+L+I YRAGIVPV++
Sbjct: 304 GSSCVPGSITITATNLCPPNYALPNDDGGWCNPPRAHCDMAEPAYLQIGIYRAGIVPVSY 483
Query: 381 RRVPCVKKGGIRFTINGHSYFNLVLVTNVAGAGDVRSVSIRGSRTGWQPMSRNWGQNW 554
RRVPCVKKGGIRFTINGHSYFNLVLVTNVAGAGDV+SVSI+GS +GWQ M +WGQNW
Sbjct: 484 RRVPCVKKGGIRFTINGHSYFNLVLVTNVAGAGDVQSVSIKGSSSGWQAMCPHWGQNW 657
Score = 182 bits (393), Expect(2) = 6e-051
Identities = 82/113 (72%), Positives = 89/113 (78%)
Frame = -2 / -1
Query: 553 QFWPQFRDMGCHPVREPRMETERTSPAPATLVTSTRLK*ECPLMVNRMPPFFTHGTLLNA 374
QF PQ M CHP +P MET+ TSPAPATLVTSTRLK*E PLMVN +PPFFT GTL
Sbjct: 656 QF*PQCGHMACHPELDPLMETDCTSPAPATLVTSTRLK*EWPLMVNLIPPFFTQGTLR*E 477
Query: 373 TGTMPARYCAMRRKAGSAMSKCGRGGLHQPPSSLGRP*LGGQKLVAVTVMVPG 215
TGTMPAR + R AGSAMS+C RGGLHQPPSSLG *LGGQ+LVAV VM+PG
Sbjct: 476 TGTMPAR*IPIWR*AGSAMSQCARGGLHQPPSSLGSA*LGGQRLVAVMVMLPG 318
Score = 103 bits (220), Expect(2) = 1e-090
Identities = 39/42 (92%), Positives = 41/42 (97%)
Frame = +3 / +1
Query: 66 TTGGACGYGNLYSTGYGTSTAALSTALFNDGAACGSCYELRC 191
T GGACGYGNLYSTGYGT+TAALSTALFNDGAACGSCYEL+C
Sbjct: 175 TMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELKC 300
Score = 66.6 bits (139), Expect(4) = 5e-024
Identities = 22/28 (78%), Positives = 23/28 (82%)
Frame = +1 / +2
Query: 448 WCW*PTWRAPATCAPSPSGAPARGGSPC 531
WCW*PTW APATC+PSPS PA GG PC
Sbjct: 551 WCW*PTWPAPATCSPSPSRGPAPGGRPC 634
Score = 53.3 bits (110), Expect(4) = 5e-024
Identities = 18/22 (81%), Positives = 22/22 (100%)
Frame = +2 / +3
Query: 74 RRLRVRQPVQHGVRHEHGGAEH 139
RR+R+R+PVQHG+RHEHGGAEH
Sbjct: 183 RRVRLREPVQHGLRHEHGGAEH 248
Score = 38.6 bits (78), Expect(2) = 6e-051
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = -2 / -1
Query: 172 DPHAAPSLNSAVLSAA 125
DPHAAPSLNSAVLSAA
Sbjct: 281 DPHAAPSLNSAVLSAA 234
Score = 29.5 bits (58), Expect(4) = 5e-024
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = +2 / +3
Query: 383 ESAVREEGRHPVHHQRALLL 442
E A+ EEGR VHH R LLL
Sbjct: 486 EGALCEEGRDKVHH*RPLLL 545
Score = 21.7 bits (41), Expect(4) = 5e-024
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +3 / +3
Query: 585 LSFQVTASDGRTVTSN 632
LSF+ T GRT T+N
Sbjct: 690 LSFRGTPHXGRTXTTN 737
>gb|BF622346.3|BF622346 HVSMEa0002O08f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0002O08f, mRNA sequence
Length = 844
Score = 324 bits (702), Expect(2) = 5e-090
Identities = 126/142 (88%), Positives = 131/142 (92%)
Frame = +3 / +3
Query: 66 TTGGACGYGNLYSTGYGTSTAALSTALFNDGAACGSCYELRCDNDGRWCLPGTITVTATN 245
T GGACGYGNLYSTGYGT+TAALSTALFNDGAACGSCYELRCDN G C PG+I VTATN
Sbjct: 231 TMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELRCDNAGSSCRPGSIMVTATN 410
Query: 246 FCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLRIAQYRAGIVPVAFRRVPCVKKGGIRFTI 425
FCPPNYGLPSDDGGWCNPPRPH DMAEPAFL IAQYRAGIVP+++RRVPCVKKGGIRFTI
Sbjct: 411 FCPPNYGLPSDDGGWCNPPRPHLDMAEPAFLHIAQYRAGIVPLSYRRVPCVKKGGIRFTI 590
Query: 426 NGHSYFNLVLVTNVAGAGDVRS 491
NGHSY NL LVTNVAGAGD RS
Sbjct: 591 NGHSYLNLGLVTNVAGAGDARS 656
Score = 216 bits (466), Expect(2) = 5e-056
Identities = 98/122 (80%), Positives = 99/122 (81%)
Frame = -2 / -1
Query: 490 ERTSPAPATLVTSTRLK*ECPLMVNRMPPFFTHGTLLNATGTMPARYCAMRRKAGSAMSK 311
ER SPAPATLVTS R K*E PLMVNRMPPFFTHGTLL GTMPARYCAM RKAGSAMSK
Sbjct: 655 ERASPAPATLVTSPRFK*EWPLMVNRMPPFFTHGTLL*ERGTMPARYCAMWRKAGSAMSK 476
Query: 310 CGRGGLHQPPSSLGRP*LGGQKLVAVTVMVPGXXXXXXXXXXXX*QDPHAAPSLNSAVLS 131
GRGGLHQPPSSLGRP*LGGQKLVAVT+M PG * DPHAAPSLNSAVLS
Sbjct: 475 WGRGGLHQPPSSLGRP*LGGQKLVAVTMMDPGRHELPALSQRSS*HDPHAAPSLNSAVLS 296
Query: 130 AA 125
AA
Sbjct: 295 AA 290
Score = 51.5 bits (106), Expect(4) = 8e-021
Identities = 23/42 (54%), Positives = 24/42 (57%)
Frame = +2 / +2
Query: 317 HGRAGLPXXXXXXXXXXXXXXQESAVREEGRHPVHHQRALLL 442
HGRAGLP Q+ AVREE HPVHHQR LLL
Sbjct: 482 HGRAGLPPHRAVPGRHRTPLLQKGAVREERGHPVHHQRPLLL 607
Score = 48.3 bits (99), Expect(4) = 8e-021
Identities = 19/24 (79%), Positives = 20/24 (83%)
Frame = +2 / +2
Query: 68 DRRRLRVRQPVQHGVRHEHGGAEH 139
D R +RVR PVQH VRHEHGGAEH
Sbjct: 233 DGRGVRVR*PVQHWVRHEHGGAEH 304
Score = 33.6 bits (67), Expect(4) = 8e-021
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = +1 / +1
Query: 448 WCW*PTWRAPATCAPSPSG 504
W W*PTW AP T AP G
Sbjct: 613 WGW*PTWPAPGTRAPVHQG 669
Score = 27.6 bits (54), Expect(2) = 5e-090
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2 / +3
Query: 524 AHVPELGPELAEQLVPGQAGALVPG 598
+HVP LG +LAE + G+A A G
Sbjct: 687 SHVPHLGLDLAEHHLTGRAKAFTFG 761
Score = 27.2 bits (53), Expect(4) = 8e-021
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +3 / +1
Query: 528 MSRNWGQNWQSNSYL 572
MSR WG WQS + L
Sbjct: 691 MSRTWGLTWQSTTLL 735
Score = 22.1 bits (42), Expect(2) = 5e-056
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -2 / -3
Query: 562 LLCQFWPQFRDM 527
+LCQ PQ RDM
Sbjct: 725 VLCQVKPQVRDM 690
>gb|BI960235.1|BI960235 HVSMEn0023N12f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0023N12f, mRNA sequence
Length = 667
Score = 237 bits (512), Expect(3) = 3e-088
Identities = 95/131 (72%), Positives = 106/131 (80%)
Frame = +3 / +1
Query: 252 PPNYGLPSDDGGWCNPPRPHFDMAEPAFLRIAQYRAGIVPVAFRRVPCVKKGGIRFTING 431
P DDGGWCNPPR HFDMAEPA+L+I YRAGIVPV++RRVPCVKKGG+RFTING
Sbjct: 160 PAQLRAAEDDGGWCNPPRAHFDMAEPAYLQIGIYRAGIVPVSYRRVPCVKKGGMRFTING 339
Query: 432 HSYFNLVLVTNVAGAGDVRSVSIRGSRTGWQPMSRNWGQNWQSNSYLDRQALSFQVTASD 611
HSYFNLVLVTNVAGAGDV+SVSI+GS +GWQ M WG NWQSN+ LD Q+LSFQVT +
Sbjct: 340 HSYFNLVLVTNVAGAGDVQSVSIKGSSSGWQAMFPQWGHNWQSNADLDGQSLSFQVTLTY 519
Query: 612 GRTVTSNGAVP 644
R VT N A P
Sbjct: 520 RRDVTINNAAP 552
Score = 170 bits (365), Expect(4) = 3e-052
Identities = 80/123 (65%), Positives = 87/123 (70%)
Frame = -2 / -3
Query: 643 GTAPLLVTVRPSLAVTWNESACLSRYELLCQFWPQFRDMGCHPVREPRMETERTSPAPAT 464
G A L+VT R + VT E SR LLCQ WP +M CHP +P MET+ TSPAPAT
Sbjct: 551 GAALLMVTSRR*VRVT*KERL*PSRSALLCQLWPHCGNMACHPELDPLMETDCTSPAPAT 372
Query: 463 LVTSTRLK*ECPLMVNRMPPFFTHGTLLNATGTMPARYCAMRRKAGSAMSKCGRGGLHQP 284
LVTSTRLK*E PLMVN +PPFFT GTL TGTMPAR + R AGSAMSK RGGLHQP
Sbjct: 371 LVTSTRLK*EWPLMVNLIPPFFTQGTLR*ETGTMPAR*IPIWR*AGSAMSKWARGGLHQP 192
Query: 283 PSS 275
PSS
Sbjct: 191 PSS 183
Score = 80.3 bits (169), Expect(3) = 3e-088
Identities = 31/34 (91%), Positives = 33/34 (97%)
Frame = +3 / +2
Query: 90 GNLYSTGYGTSTAALSTALFNDGAACGSCYELRC 191
GNLYSTG GT+TAALSTALFNDGAACGSCYEL+C
Sbjct: 5 GNLYSTGCGTNTAALSTALFNDGAACGSCYELKC 106
Score = 61.1 bits (127), Expect(4) = 1e-022
Identities = 21/28 (75%), Positives = 22/28 (78%)
Frame = +1 / +2
Query: 448 WCW*PTWRAPATCAPSPSGAPARGGSPC 531
WC *PTW APATC+PSPS PA GG PC
Sbjct: 356 WCL*PTWPAPATCSPSPSRGPAPGGKPC 439
Score = 47.8 bits (98), Expect(3) = 3e-088
Identities = 16/23 (69%), Positives = 19/23 (82%)
Frame = +3 / +2
Query: 201 GRWCLPGTITVTATNFCPPNYGL 269
G C+PG+IT+TATN CPPNY L
Sbjct: 110 GSSCVPGSITITATNLCPPNYAL 178
Score = 38.6 bits (78), Expect(4) = 3e-052
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = -2 / -2
Query: 172 DPHAAPSLNSAVLSAA 125
DPHAAPSLNSAVLSAA
Sbjct: 87 DPHAAPSLNSAVLSAA 40
Score = 38.2 bits (77), Expect(4) = 1e-022
Identities = 13/18 (72%), Positives = 16/18 (88%)
Frame = +2 / +1
Query: 86 VRQPVQHGVRHEHGGAEH 139
+R+PVQH +R EHGGAEH
Sbjct: 1 LREPVQHRLRDEHGGAEH 54
Score = 33.6 bits (67), Expect(4) = 1e-022
Identities = 14/20 (70%), Positives = 15/20 (75%)
Frame = +2 / +3
Query: 383 ESAVREEGRHPVHHQRALLL 442
E A+ EEGR VHHQR LLL
Sbjct: 291 EGALCEEGRDEVHHQRPLLL 350
Score = 32.7 bits (65), Expect(4) = 1e-022
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +2 / +3
Query: 518 VAAHVPELGPELAEQLVPGQAGALVPG 598
VA+HVP +GP LAEQ P ++ L+ G
Sbjct: 426 VASHVPAMGP*LAEQRGPRRSEPLLSG 506
Score = 31.3 bits (62), Expect(4) = 3e-052
Identities = 13/16 (81%), Positives = 15/16 (93%)
Frame = -2 / -2
Query: 262 *LGGQKLVAVTVMVPG 215
*LGGQ+LVAV VM+PG
Sbjct: 171 *LGGQRLVAVMVMLPG 124
Score = 22.6 bits (43), Expect(4) = 3e-052
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = -2 / -2
Query: 685 NWPPSKVWPNCQP 647
NWPPS+ QP
Sbjct: 594 NWPPSRYVQKSQP 556
>gb|BJ454545.1|BJ454545 BJ454545 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak24n09 5', mRNA sequence
Length = 654
Score = 311 bits (673), Expect = 5e-084
Identities = 120/149 (80%), Positives = 135/149 (90%)
Frame = +3 / +1
Query: 201 GRWCLPGTITVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLRIAQYRAGIVPVAF 380
G C+PG+IT+TATN CPPNY LP+DDGGWCNPPR HFDMAEPA+L+I YRAGIVPV++
Sbjct: 28 GSSCVPGSITITATNLCPPNYALPNDDGGWCNPPRAHFDMAEPAYLQIGIYRAGIVPVSY 207
Query: 381 RRVPCVKKGGIRFTINGHSYFNLVLVTNVAGAGDVRSVSIRGSRTGWQPMSRNWGQNWQS 560
RRVPCVKKGG+RFTINGHSYFNLVLVTNVAGAGDV+SVSI+GS +GWQ MSRNWGQNWQS
Sbjct: 208 RRVPCVKKGGMRFTINGHSYFNLVLVTNVAGAGDVQSVSIKGSSSGWQAMSRNWGQNWQS 387
Query: 561 NSYLDRQALSFQVTASDGRTVTSNGAVPA 647
N+ LD Q+LSF+VT SDGRTVTSN A PA
Sbjct: 388 NADLDGQSLSFRVTLSDGRTVTSNNAAPA 474
Score = 256 bits (553), Expect = 2e-067
Identities = 115/157 (73%), Positives = 121/157 (77%)
Frame = -2 / -2
Query: 685 NWPPSKVWPNCQPAGTAPLLVTVRPSLAVTWNESACLSRYELLCQFWPQFRDMGCHPVRE 506
NWPPSKV P QPAG A LLVTVRPSL VT E SR LLCQFWPQ RDM CHP +
Sbjct: 512 NWPPSKVCPKDQPAGAALLLVTVRPSLRVTRKERLWPSRSALLCQFWPQLRDMACHPELD 333
Query: 505 PRMETERTSPAPATLVTSTRLK*ECPLMVNRMPPFFTHGTLLNATGTMPARYCAMRRKAG 326
P MET+ TSPAPATLVTSTRLK*E PLMVN +PPFFT GTL TGTMPAR + R AG
Sbjct: 332 PLMETDCTSPAPATLVTSTRLK*EWPLMVNLIPPFFTQGTLR*ETGTMPAR*IPIWR*AG 153
Query: 325 SAMSKCGRGGLHQPPSSLGRP*LGGQKLVAVTVMVPG 215
SAMSK RGGLHQPPSSLG *LGGQ+LVAV VM+PG
Sbjct: 152 SAMSKWARGGLHQPPSSLGSA*LGGQRLVAVMVMLPG 42
>gb|BI958334.1|BI958334 HVSMEn0014H08f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0014H08f, mRNA sequence
Length = 634
Score = 223 bits (482), Expect(2) = 1e-082
Identities = 85/102 (83%), Positives = 95/102 (93%)
Frame = +3 / +3
Query: 201 GRWCLPGTITVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLRIAQYRAGIVPVAF 380
G C+PG+IT+TATN CPPNY LP+DDGGWCNPPR HFDMAEPA+L+I YRAGIVPV++
Sbjct: 327 GSSCVPGSITITATNLCPPNYALPNDDGGWCNPPRAHFDMAEPAYLQIGIYRAGIVPVSY 506
Query: 381 RRVPCVKKGGIRFTINGHSYFNLVLVTNVAGAGDVRSVSIRG 506
RRVPCVKKGG+RFTINGHSYFNLVLVTNVAGAGDV+SVSIRG
Sbjct: 507 RRVPCVKKGGMRFTINGHSYFNLVLVTNVAGAGDVQSVSIRG 632
Score = 161 bits (347), Expect(2) = 1e-044
Identities = 74/98 (75%), Positives = 80/98 (81%)
Frame = -2 / -1
Query: 508 EPRMETERTSPAPATLVTSTRLK*ECPLMVNRMPPFFTHGTLLNATGTMPARYCAMRRKA 329
+P MET+ TSPAPATLVTSTRLK*E PLMVN +PPFFT GTL TGTMPAR + R A
Sbjct: 634 DPLMETDCTSPAPATLVTSTRLK*EWPLMVNLIPPFFTQGTLR*ETGTMPAR*IPIWR*A 455
Query: 328 GSAMSKCGRGGLHQPPSSLGRP*LGGQKLVAVTVMVPG 215
GSAMSK RGGLHQPPSSLG *LGGQ+LVAV VM+PG
Sbjct: 454 GSAMSKWARGGLHQPPSSLGSA*LGGQRLVAVMVMLPG 341
Score = 103 bits (220), Expect(2) = 1e-082
Identities = 39/42 (92%), Positives = 41/42 (97%)
Frame = +3 / +3
Query: 66 TTGGACGYGNLYSTGYGTSTAALSTALFNDGAACGSCYELRC 191
T GGACGYGNLYSTGYGT+TAALSTALFNDGAACGSCYEL+C
Sbjct: 198 TMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELKC 323
Score = 38.6 bits (78), Expect(2) = 1e-044
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = -2 / -1
Query: 172 DPHAAPSLNSAVLSAA 125
DPHAAPSLNSAVLSAA
Sbjct: 304 DPHAAPSLNSAVLSAA 257
>gb|BJ462348.1|BJ462348 BJ462348 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak24n09 3', mRNA sequence
Length = 720
Score = 299 bits (648), Expect = 1e-080
Identities = 116/142 (81%), Positives = 130/142 (91%)
Frame = +3 / -3
Query: 222 TITVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLRIAQYRAGIVPVAFRRVPCVK 401
+IT+TATN CPPNY LP+DDGGWCNPPR HFDMAEPA+L+I YRAGIVPV++RRVPCVK
Sbjct: 718 SITITATNLCPPNYALPNDDGGWCNPPRAHFDMAEPAYLQIGIYRAGIVPVSYRRVPCVK 539
Query: 402 KGGIRFTINGHSYFNLVLVTNVAGAGDVRSVSIRGSRTGWQPMSRNWGQNWQSNSYLDRQ 581
KGG+RFTINGHSYFNLVLVTNVAGAGDV+SVSI+GS +GWQ MSRNWGQNWQSN+ LD Q
Sbjct: 538 KGGMRFTINGHSYFNLVLVTNVAGAGDVQSVSIKGSSSGWQAMSRNWGQNWQSNADLDGQ 359
Query: 582 ALSFQVTASDGRTVTSNGAVPA 647
+LSF+VT SDGRTVTSN A PA
Sbjct: 358 SLSFRVTLSDGRTVTSNNAAPA 293
Score = 250 bits (540), Expect = 1e-065
Identities = 113/155 (72%), Positives = 119/155 (76%)
Frame = -2 / +3
Query: 685 NWPPSKVWPNCQPAGTAPLLVTVRPSLAVTWNESACLSRYELLCQFWPQFRDMGCHPVRE 506
NWPPSKV P QPAG A LLVTVRPSL VT E SR LLCQFWPQ RDM CHP +
Sbjct: 255 NWPPSKVCPKDQPAGAALLLVTVRPSLRVTRKERLWPSRSALLCQFWPQLRDMACHPELD 434
Query: 505 PRMETERTSPAPATLVTSTRLK*ECPLMVNRMPPFFTHGTLLNATGTMPARYCAMRRKAG 326
P MET+ TSPAPATLVTSTRLK*E PLMVN +PPFFT GTL TGTMPAR + R AG
Sbjct: 435 PLMETDCTSPAPATLVTSTRLK*EWPLMVNLIPPFFTQGTLR*ETGTMPAR*IPIWR*AG 614
Query: 325 SAMSKCGRGGLHQPPSSLGRP*LGGQKLVAVTVMV 221
SAMSK RGGLHQPPSSLG *LGGQ+LVAV VM+
Sbjct: 615 SAMSKWARGGLHQPPSSLGSA*LGGQRLVAVMVML 719
>gb|BF253497.3|BF253497 HVSMEf0001B16f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0001B16f, mRNA sequence
Length = 574
Score = 225 bits (486), Expect(3) = 3e-079
Identities = 86/110 (78%), Positives = 98/110 (89%)
Frame = +3 / +1
Query: 201 GRWCLPGTITVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLRIAQYRAGIVPVAF 380
G C+PG+IT+TATN CPPNY LP+DDGGWCNPPR HFDMAEPA+L+I YRAGIVPV++
Sbjct: 91 GSSCVPGSITITATNLCPPNYALPNDDGGWCNPPRAHFDMAEPAYLQIGIYRAGIVPVSY 270
Query: 381 RRVPCVKKGGIRFTINGHSYFNLVLVTNVAGAGDVRSVSIRGSRTGWQPM 530
RRVPCVKKGG+RFTINGHSYFNLVLVTNVAGAGDV+SVSI+G G P+
Sbjct: 271 RRVPCVKKGGMRFTINGHSYFNLVLVTNVAGAGDVQSVSIKGPAPGGGPV 420
Score = 161 bits (346), Expect(3) = 2e-048
Identities = 76/104 (73%), Positives = 81/104 (77%)
Frame = -2 / -3
Query: 526 GCHPVREPRMETERTSPAPATLVTSTRLK*ECPLMVNRMPPFFTHGTLLNATGTMPARYC 347
G P P MET+ TSPAPATLVTSTRLK*E PLMVN +PPFFT GTL TGTMPAR
Sbjct: 416 GPPPGAGPFMETDCTSPAPATLVTSTRLK*EWPLMVNLIPPFFTQGTLR*ETGTMPAR*I 237
Query: 346 AMRRKAGSAMSKCGRGGLHQPPSSLGRP*LGGQKLVAVTVMVPG 215
+ R AGSAMSK RGGLHQPPSSLG *LGGQ+LVAV VM+PG
Sbjct: 236 PIWR*AGSAMSKWARGGLHQPPSSLGSA*LGGQRLVAVMVMLPG 105
Score = 72.1 bits (151), Expect(3) = 3e-079
Identities = 27/29 (93%), Positives = 29/29 (100%)
Frame = +3 / +1
Query: 105 TGYGTSTAALSTALFNDGAACGSCYELRC 191
TGYGT+TAALSTALFNDGAACGSCYEL+C
Sbjct: 1 TGYGTNTAALSTALFNDGAACGSCYELKC 87
Score = 38.6 bits (78), Expect(3) = 2e-048
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = -2 / -3
Query: 172 DPHAAPSLNSAVLSAA 125
DPHAAPSLNSAVLSAA
Sbjct: 68 DPHAAPSLNSAVLSAA 21
Score = 37.7 bits (76), Expect(3) = 3e-079
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +3 / +2
Query: 522 QPMSRNWGQNWQSNSYLDR 578
+ +SRNWGQNWQSN L R
Sbjct: 410 EALSRNWGQNWQSNGGLRR 466
Score = 31.3 bits (62), Expect(3) = 2e-048
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = -2 / -2
Query: 562 LLCQFWPQFRD 530
LLCQFWPQ RD
Sbjct: 450 LLCQFWPQLRD 418
>gb|BQ768669.1|BQ768669 EBro08_SQ012_H11_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ012_H11 5', mRNA sequence
Length = 590
Score = 212 bits (457), Expect(2) = 4e-079
Identities = 80/95 (84%), Positives = 88/95 (92%)
Frame = +3 / +2
Query: 201 GRWCLPGTITVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLRIAQYRAGIVPVAF 380
G C+PG+IT+TATN CPPNY LP+DDGGWCNPPR HFDMAEPA+L+I YRAGIVPV++
Sbjct: 305 GSSCVPGSITITATNLCPPNYALPNDDGGWCNPPRAHFDMAEPAYLQIGIYRAGIVPVSY 484
Query: 381 RRVPCVKKGGIRFTINGHSYFNLVLVTNVAGAGDV 485
RRVPCVKKGGIRFTINGHSYFNLVLVTNVAGAGDV
Sbjct: 485 RRVPCVKKGGIRFTINGHSYFNLVLVTNVAGAGDV 589
Score = 157 bits (337), Expect(2) = 3e-043
Identities = 71/90 (78%), Positives = 75/90 (83%)
Frame = -2 / -3
Query: 484 TSPAPATLVTSTRLK*ECPLMVNRMPPFFTHGTLLNATGTMPARYCAMRRKAGSAMSKCG 305
TSPAPATLVTSTRLK*E PLMVN +PPFFT GTL TGTMPAR + R AGSAMSKC
Sbjct: 588 TSPAPATLVTSTRLK*EWPLMVNLIPPFFTQGTLR*ETGTMPAR*IPIWR*AGSAMSKCA 409
Query: 304 RGGLHQPPSSLGRP*LGGQKLVAVTVMVPG 215
RGGLHQPPSSLG *LGGQ+LVAV VM+PG
Sbjct: 408 RGGLHQPPSSLGSA*LGGQRLVAVMVMLPG 319
Score = 103 bits (220), Expect(2) = 4e-079
Identities = 39/42 (92%), Positives = 41/42 (97%)
Frame = +3 / +2
Query: 66 TTGGACGYGNLYSTGYGTSTAALSTALFNDGAACGSCYELRC 191
T GGACGYGNLYSTGYGT+TAALSTALFNDGAACGSCYEL+C
Sbjct: 176 TMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELKC 301
Score = 38.6 bits (78), Expect(2) = 3e-043
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = -2 / -3
Query: 172 DPHAAPSLNSAVLSAA 125
DPHAAPSLNSAVLSAA
Sbjct: 282 DPHAAPSLNSAVLSAA 235
>gb|BQ760682.1|BQ760682 EBro03_SQ003_C23_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ003_C23 5', mRNA sequence
Length = 594
Score = 182 bits (393), Expect(3) = 4e-077
Identities = 65/96 (67%), Positives = 83/96 (86%)
Frame = +3 / +1
Query: 222 TITVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLRIAQYRAGIVPVAFRRVPCVK 401
T+TVTATNFCPPN LP+D+GGWCNPPRPHFDMA+PA+ +I YR GI+PV ++RVPCVK
Sbjct: 187 TVTVTATNFCPPNNALPNDNGGWCNPPRPHFDMAQPAWEKIGVYRGGIIPVMYQRVPCVK 366
Query: 402 KGGIRFTINGHSYFNLVLVTNVAGAGDVRSVSIRGS 509
+GG+RF +NGH YFNLVLV+NVA AG ++S+ ++ S
Sbjct: 367 RGGVRFKMNGHDYFNLVLVSNVAAAGSIQSMDVKCS 474
Score = 123 bits (264), Expect(3) = 1e-031
Identities = 57/86 (66%), Positives = 62/86 (72%)
Frame = -2 / -2
Query: 478 PAPATLVTSTRLK*ECPLMVNRMPPFFTHGTLLNATGTMPARYCAMRRKAGSAMSKCGRG 299
PA ATL+TSTRLK* P ++N PP FTHGTL TG MP + +AG AMSKCGRG
Sbjct: 443 PAAATLLTSTRLK*S*PFILNLTPPRFTHGTLWYMTGMMPPL*TPIFSQAGCAMSKCGRG 264
Query: 298 GLHQPPSSLGRP*LGGQKLVAVTVMV 221
GLHQPP SLGR LGGQK VAVTV V
Sbjct: 263 GLHQPPLSLGRALLGGQKFVAVTVTV 186
Score = 93.2 bits (197), Expect(3) = 4e-077
Identities = 34/43 (79%), Positives = 37/43 (86%)
Frame = +3 / +1
Query: 66 TTGGACGYGNLYSTGYGTSTAALSTALFNDGAACGSCYELRCD 194
T GGACGYGNL+S GYGT TAALST LFNDGAACG CY++ CD
Sbjct: 19 TMGGACGYGNLFSEGYGTRTAALSTVLFNDGAACGQCYKIACD 147
Score = 51.9 bits (107), Expect(3) = 4e-077
Identities = 18/35 (51%), Positives = 25/35 (71%)
Frame = +3 / +1
Query: 519 WQPMSRNWGQNWQSNSYLDRQALSFQVTASDGRTV 623
W PM+RNWG NW S + L + L+F++T SDG T+
Sbjct: 487 WMPMARNWGANWHSLANLTGKMLAFRLTNSDGHTL 591
Score = 26.7 bits (52), Expect(3) = 1e-031
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -2 / -2
Query: 169 PHAAPSLNSAVLSAA 125
P AAPSLN+ VL AA
Sbjct: 122 PQAAPSLNNTVLRAA 78
Score = 24.0 bits (46), Expect(3) = 1e-031
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -2 / -2
Query: 622 TVRPSLAVTWNESACLSRYELLCQFWPQFRDMG 524
+V PSL V+ S R CQ PQ R +G
Sbjct: 590 SVCPSLLVSLKASILPVRLASECQLAPQLRAIG 492
>gb|BQ465629.1|BQ465629 HU04D11r HU Hordeum vulgare subsp. vulgare cDNA clone HU04D11
5-PRIME, mRNA sequence
Length = 625
Score = 286 bits (620), Expect = 1e-076
Identities = 111/136 (81%), Positives = 123/136 (90%)
Frame = +3 / +2
Query: 240 TNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLRIAQYRAGIVPVAFRRVPCVKKGGIRF 419
T CPPNY LP+DDGGWCNPPR HFDMAEPA+L+I YRAGIVPV++RRVPCVKKGG+RF
Sbjct: 5 TRLCPPNYALPNDDGGWCNPPRAHFDMAEPAYLQIGIYRAGIVPVSYRRVPCVKKGGMRF 184
Query: 420 TINGHSYFNLVLVTNVAGAGDVRSVSIRGSRTGWQPMSRNWGQNWQSNSYLDRQALSFQV 599
TINGHSYFNLVLVTNVAGAGDV+SVSI+GS +GWQ MSRNWGQNWQSN+ LD Q+LSF+V
Sbjct: 185 TINGHSYFNLVLVTNVAGAGDVQSVSIKGSSSGWQAMSRNWGQNWQSNADLDGQSLSFRV 364
Query: 600 TASDGRTVTSNGAVPA 647
T SDGRTVTSN A PA
Sbjct: 365 TLSDGRTVTSNNAAPA 412
Score = 241 bits (521), Expect = 4e-063
Identities = 109/149 (73%), Positives = 113/149 (75%)
Frame = -2 / -2
Query: 685 NWPPSKVWPNCQPAGTAPLLVTVRPSLAVTWNESACLSRYELLCQFWPQFRDMGCHPVRE 506
NWPPSKV P QPAG A LLVTVRPSL VT E SR LLCQFWPQ RDM CHP +
Sbjct: 450 NWPPSKVCPKDQPAGAALLLVTVRPSLRVTRKERLWPSRSALLCQFWPQLRDMACHPELD 271
Query: 505 PRMETERTSPAPATLVTSTRLK*ECPLMVNRMPPFFTHGTLLNATGTMPARYCAMRRKAG 326
P MET+ TSPAPATLVTSTRLK*E PLMVN +PPFFT GTL TGTMPAR + R AG
Sbjct: 270 PLMETDCTSPAPATLVTSTRLK*EWPLMVNLIPPFFTQGTLR*ETGTMPAR*IPIWR*AG 91
Query: 325 SAMSKCGRGGLHQPPSSLGRP*LGGQKLV 239
SAMSK RGGLHQPPSSLG *LGGQ LV
Sbjct: 90 SAMSKWARGGLHQPPSSLGSA*LGGQSLV 4
>gb|CA031352.1|CA031352 HX09L09r HX Hordeum vulgare subsp. vulgare cDNA clone HX09L09
5-PRIME, mRNA sequence
Length = 631
Score = 200 bits (431), Expect(4) = 4e-076
Identities = 76/102 (74%), Positives = 87/102 (85%)
Frame = +3 / +3
Query: 210 CLPGTITVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLRIAQYRAGIVPVAFRRV 389
CLPG+ VTATNFCPPN+G SD GGWCNPPR HFDM++P F RIA YRAGIVPV++RRV
Sbjct: 111 CLPGSTVVTATNFCPPNFGESSDAGGWCNPPRAHFDMSQPVFQRIALYRAGIVPVSYRRV 290
Query: 390 PCVKKGGIRFTINGHSYFNLVLVTNVAGAGDVRSVSIRGSRT 515
C KKGGIRFTINGHSYFNLVLVTNV G GDV +VS++ +R+
Sbjct: 291 ACQKKGGIRFTINGHSYFNLVLVTNVGGPGDVHAVSVKSTRS 416
Score = 137 bits (294), Expect(2) = 7e-049
Identities = 64/94 (68%), Positives = 68/94 (72%)
Frame = -2 / -1
Query: 496 ETERTSPAPATLVTSTRLK*ECPLMVNRMPPFFTHGTLLNATGTMPARYCAMRRKAGSAM 317
+T TSP P TLVTSTRLK E PL+VN MPPFF H TL TGTMPAR AMR K G M
Sbjct: 397 DTACTSPGPPTLVTSTRLKYEWPLIVNLMPPFFWHATLR*ETGTMPAR*SAMRWKTGWDM 218
Query: 316 SKCGRGGLHQPPSSLGRP*LGGQKLVAVTVMVPG 215
SK RGGLHQPP+S P LGGQKLVAVT + PG
Sbjct: 217 SKWARGGLHQPPASDDSPKLGGQKLVAVTTVEPG 116
Score = 78.5 bits (165), Expect(4) = 4e-076
Identities = 29/42 (69%), Positives = 35/42 (83%)
Frame = +3 / +3
Query: 519 WQPMSRNWGQNWQSNSYLDRQALSFQVTASDGRTVTSNGAVP 644
WQ +SRNWGQNWQSN+ LD Q LSF+VTA +G++V SN AVP
Sbjct: 423 WQALSRNWGQNWQSNALLDGQGLSFRVTAGNGQSVVSNNAVP 548
Score = 77.1 bits (162), Expect(2) = 7e-049
Identities = 33/56 (58%), Positives = 34/56 (60%)
Frame = -2 / -1
Query: 685 NWPPSKVWPNCQPAGTAPLLVTVRPSLAVTWNESACLSRYELLCQFWPQFRDMGCH 518
NW P KVWPN QP GTA L T P AVT NE C S LLCQF PQ R+ CH
Sbjct: 589 NWAPLKVWPNDQPRGTALLETTDWPLPAVTRNERPCPSSSALLCQFCPQLRESACH 422
Score = 41.4 bits (84), Expect(4) = 4e-076
Identities = 13/21 (61%), Positives = 18/21 (85%)
Frame = +3 / +3
Query: 141 ALFNDGAACGSCYELRCDNDG 203
ALFN+G +CG+C+E+RCD G
Sbjct: 24 ALFNNGLSCGACFEVRCDPGG 86
Score = 23.1 bits (44), Expect(4) = 4e-076
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = +2 / +2
Query: 650 LAVRPDLRGRPV 685
L +RPDL+ RPV
Sbjct: 554 LVIRPDLQRRPV 589
>gb|CA023510.1|CA023510 HZ46H12r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ46H12
5-PRIME, mRNA sequence
Length = 429
Score = 265 bits (573), Expect(2) = 5e-076
Identities = 99/121 (81%), Positives = 111/121 (91%)
Frame = +3 / +3
Query: 201 GRWCLPGTITVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLRIAQYRAGIVPVAF 380
G C+PG+IT+TATN CPPNY LP+DDGGWCNPPR HFDMAEPA+L+I YRAGIVPV++
Sbjct: 66 GSSCVPGSITITATNLCPPNYALPNDDGGWCNPPRAHFDMAEPAYLQIGIYRAGIVPVSY 245
Query: 381 RRVPCVKKGGIRFTINGHSYFNLVLVTNVAGAGDVRSVSIRGSRTGWQPMSRNWGQNWQS 560
RRVPCVKKGG+RFTINGHSYFNLVL TNVAGAGDV+SVSI+GS +GWQ MSRNWGQNWQS
Sbjct: 246 RRVPCVKKGGMRFTINGHSYFNLVLXTNVAGAGDVQSVSIKGSSSGWQAMSRNWGQNWQS 425
Query: 561 N 563
N
Sbjct: 426 N 428
Score = 198 bits (427), Expect(2) = 5e-051
Identities = 87/116 (75%), Positives = 92/116 (79%)
Frame = -2 / -3
Query: 562 LLCQFWPQFRDMGCHPVREPRMETERTSPAPATLVTSTRLK*ECPLMVNRMPPFFTHGTL 383
LLCQFWPQ RDM CHP +P MET+ TSPAPATLV STRLK*E PLMVN PPFFT GTL
Sbjct: 427 LLCQFWPQLRDMACHPELDPLMETDCTSPAPATLVXSTRLK*EWPLMVNLXPPFFTQGTL 248
Query: 382 LNATGTMPARYCAMRRKAGSAMSKCGRGGLHQPPSSLGRP*LGGQKLVAVTVMVPG 215
TGTMPAR + R AGSAMSK RGGLHQPPSSLG *LGGQ+LVAV VM+PG
Sbjct: 247 R*ETGTMPAR*IPIWR*AGSAMSKWARGGLHQPPSSLGSA*LGGQRLVAVMVMLPG 80
Score = 40.0 bits (81), Expect(2) = 5e-076
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +3 / +3
Query: 150 NDGAACGSCYELRC 191
NDGAACGSCYEL+C
Sbjct: 21 NDGAACGSCYELKC 62
Score = 23.5 bits (45), Expect(2) = 5e-051
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -2 / -3
Query: 172 DPHAAPSLNS 143
DPHAAPSL +
Sbjct: 43 DPHAAPSLTA 14
>gb|CA005047.1|CA005047 HU12E04u HU Hordeum vulgare subsp. vulgare cDNA clone HU12E04
3-PRIME, mRNA sequence
Length = 529
Score = 280 bits (606), Expect = 8e-075
Identities = 109/132 (82%), Positives = 121/132 (91%)
Frame = +3 / +3
Query: 252 PPNYGLPSDDGGWCNPPRPHFDMAEPAFLRIAQYRAGIVPVAFRRVPCVKKGGIRFTING 431
PPNY LP+DDGGWCNPPR HFDMAEPA+L+I YRAGIVPV++RRVPCVKKGG+RFTING
Sbjct: 3 PPNYALPNDDGGWCNPPRAHFDMAEPAYLQIGIYRAGIVPVSYRRVPCVKKGGMRFTING 182
Query: 432 HSYFNLVLVTNVAGAGDVRSVSIRGSRTGWQPMSRNWGQNWQSNSYLDRQALSFQVTASD 611
HSYFNLVLVTNVAGAGDV+SVSI+GS +GWQ MSRNWGQNWQSN+ LD Q+LSF+VT SD
Sbjct: 183 HSYFNLVLVTNVAGAGDVQSVSIKGSSSGWQAMSRNWGQNWQSNADLDGQSLSFRVTLSD 362
Query: 612 GRTVTSNGAVPA 647
GRTVTSN A PA
Sbjct: 363 GRTVTSNNAAPA 398
Score = 235 bits (508), Expect = 3e-061
Identities = 106/145 (73%), Positives = 110/145 (75%)
Frame = -2 / -1
Query: 685 NWPPSKVWPNCQPAGTAPLLVTVRPSLAVTWNESACLSRYELLCQFWPQFRDMGCHPVRE 506
NWPPSKV P QPAG A LLVTVRPSL VT E SR LLCQFWPQ RDM CHP +
Sbjct: 436 NWPPSKVCPKDQPAGAALLLVTVRPSLRVTRKERLWPSRSALLCQFWPQLRDMACHPELD 257
Query: 505 PRMETERTSPAPATLVTSTRLK*ECPLMVNRMPPFFTHGTLLNATGTMPARYCAMRRKAG 326
P MET+ TSPAPATLVTSTRLK*E PLMVN +PPFFT GTL TGTMPAR + R AG
Sbjct: 256 PLMETDCTSPAPATLVTSTRLK*EWPLMVNLIPPFFTQGTLR*ETGTMPAR*IPIWR*AG 77
Query: 325 SAMSKCGRGGLHQPPSSLGRP*LGG 251
SAMSK RGGLHQPPSSLG *LGG
Sbjct: 76 SAMSKWARGGLHQPPSSLGSA*LGG 2
>gb|CA024803.1|CA024803 HZ50F17r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ50F17
5-PRIME, mRNA sequence
Length = 519
Score = 200 bits (431), Expect(3) = 3e-074
Identities = 76/102 (74%), Positives = 87/102 (85%)
Frame = +3 / +2
Query: 210 CLPGTITVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLRIAQYRAGIVPVAFRRV 389
CLPG+ VTATNFCPPN+G SD GGWCNPPR HFDM++P F RIA YRAGIVPV++RRV
Sbjct: 107 CLPGSTVVTATNFCPPNFGESSDAGGWCNPPRAHFDMSQPVFQRIALYRAGIVPVSYRRV 286
Query: 390 PCVKKGGIRFTINGHSYFNLVLVTNVAGAGDVRSVSIRGSRT 515
C KKGGIRFTINGHSYFNLVLVTNV G GDV +VS++ +R+
Sbjct: 287 ACQKKGGIRFTINGHSYFNLVLVTNVGGPGDVHAVSVKSTRS 412
Score = 137 bits (294), Expect(2) = 9e-039
Identities = 64/94 (68%), Positives = 68/94 (72%)
Frame = -2 / -1
Query: 496 ETERTSPAPATLVTSTRLK*ECPLMVNRMPPFFTHGTLLNATGTMPARYCAMRRKAGSAM 317
+T TSP P TLVTSTRLK E PL+VN MPPFF H TL TGTMPAR AMR K G M
Sbjct: 393 DTACTSPGPPTLVTSTRLKYEWPLIVNLMPPFFWHATLR*ETGTMPAR*SAMRWKTGWDM 214
Query: 316 SKCGRGGLHQPPSSLGRP*LGGQKLVAVTVMVPG 215
SK RGGLHQPP+S P LGGQKLVAVT + PG
Sbjct: 213 SKWARGGLHQPPASDDSPKLGGQKLVAVTTVEPG 112
Score = 64.8 bits (135), Expect(3) = 3e-074
Identities = 23/33 (69%), Positives = 28/33 (84%)
Frame = +3 / +2
Query: 519 WQPMSRNWGQNWQSNSYLDRQALSFQVTASDGR 617
WQ +SRNWGQNWQSN+ LD Q LSF+VTA +G+
Sbjct: 419 WQALSRNWGQNWQSNALLDGQGLSFRVTAGNGQ 517
Score = 53.3 bits (110), Expect(3) = 3e-074
Identities = 19/27 (70%), Positives = 24/27 (88%)
Frame = +3 / +2
Query: 123 TAALSTALFNDGAACGSCYELRCDNDG 203
TAALSTALFN+G +CG+C+E+RCD G
Sbjct: 2 TAALSTALFNNGLSCGACFEVRCDPGG 82
Score = 43.2 bits (88), Expect(2) = 9e-039
Identities = 18/32 (56%), Positives = 19/32 (59%)
Frame = -2 / -1
Query: 613 PSLAVTWNESACLSRYELLCQFWPQFRDMGCH 518
P AVT NE C S LLCQF PQ R+ CH
Sbjct: 513 PLPAVTRNERPCPSSSALLCQFCPQLRESACH 418
>gb|BI957345.1|BI957345 HVSMEn0009B08f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0009B08f, mRNA sequence
Length = 651
Score = 200 bits (431), Expect(3) = 1e-069
Identities = 76/102 (74%), Positives = 87/102 (85%)
Frame = +3 / +3
Query: 210 CLPGTITVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLRIAQYRAGIVPVAFRRV 389
CLPG+ VTATNFCPPN+G SD GGWCNPPR HFDM++P F RIA YRAGIVPV++RRV
Sbjct: 90 CLPGSTVVTATNFCPPNFGESSDAGGWCNPPRAHFDMSQPVFQRIALYRAGIVPVSYRRV 269
Query: 390 PCVKKGGIRFTINGHSYFNLVLVTNVAGAGDVRSVSIRGSRT 515
C KKGGIRFTINGHSYFNLVLVTNV G GDV +VS++ +R+
Sbjct: 270 ACQKKGGIRFTINGHSYFNLVLVTNVGGPGDVHAVSVKSTRS 395
Score = 137 bits (294), Expect(2) = 2e-038
Identities = 64/94 (68%), Positives = 68/94 (72%)
Frame = -2 / -3
Query: 496 ETERTSPAPATLVTSTRLK*ECPLMVNRMPPFFTHGTLLNATGTMPARYCAMRRKAGSAM 317
+T TSP P TLVTSTRLK E PL+VN MPPFF H TL TGTMPAR AMR K G M
Sbjct: 376 DTACTSPGPPTLVTSTRLKYEWPLIVNLMPPFFWHATLR*ETGTMPAR*SAMRWKTGWDM 197
Query: 316 SKCGRGGLHQPPSSLGRP*LGGQKLVAVTVMVPG 215
SK RGGLHQPP+S P LGGQKLVAVT + PG
Sbjct: 196 SKWARGGLHQPPASDDSPKLGGQKLVAVTTVEPG 95
Score = 61.1 bits (127), Expect(3) = 1e-069
Identities = 22/29 (75%), Positives = 25/29 (86%)
Frame = +3 / +3
Query: 519 WQPMSRNWGQNWQSNSYLDRQALSFQVTA 605
WQ +SRNWGQNWQSN+ LD Q LSF+VTA
Sbjct: 402 WQALSRNWGQNWQSNALLDGQGLSFRVTA 488
Score = 42.3 bits (86), Expect(2) = 2e-038
Identities = 17/29 (58%), Positives = 18/29 (62%)
Frame = -2 / -3
Query: 604 AVTWNESACLSRYELLCQFWPQFRDMGCH 518
AVT NE C S LLCQF PQ R+ CH
Sbjct: 487 AVTRNERPCPSSSALLCQFCPQLRESACH 401
Score = 41.4 bits (84), Expect(3) = 1e-069
Identities = 13/21 (61%), Positives = 18/21 (85%)
Frame = +3 / +3
Query: 141 ALFNDGAACGSCYELRCDNDG 203
ALFN+G +CG+C+E+RCD G
Sbjct: 3 ALFNNGLSCGACFEVRCDPGG 65
>gb|BE215000.1|BE215000 HV_CEb0005H19f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0005H19f, mRNA sequence
Length = 904
Score = 174 bits (374), Expect(3) = 3e-069
Identities = 62/80 (77%), Positives = 72/80 (90%)
Frame = +3 / +2
Query: 201 GRWCLPGTITVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLRIAQYRAGIVPVAF 380
G C+PG+IT+T TN CPPNY LP+DDGGWCNPPR HFDMAEPA+L+I YRAGIVPV++
Sbjct: 353 GSSCVPGSITITGTNLCPPNYALPNDDGGWCNPPRAHFDMAEPAYLQIGIYRAGIVPVSY 532
Query: 381 RRVPCVKKGGIRFTINGHSY 440
R+VPCVKKGG+RFTINGHSY
Sbjct: 533 RKVPCVKKGGMRFTINGHSY 592
Score = 123 bits (263), Expect(2) = 4e-033
Identities = 55/78 (70%), Positives = 61/78 (78%)
Frame = -2 / -2
Query: 448 RLK*ECPLMVNRMPPFFTHGTLLNATGTMPARYCAMRRKAGSAMSKCGRGGLHQPPSSLG 269
++K*ECPLMVN +PPFFT GT TGTMPAR + R AGSAMSK RGGLHQPPSSLG
Sbjct: 600 QVK*ECPLMVNLIPPFFTQGTFR*ETGTMPAR*IPIWR*AGSAMSKWARGGLHQPPSSLG 421
Query: 268 RP*LGGQKLVAVTVMVPG 215
*LGGQ+LV V VM+PG
Sbjct: 420 SA*LGGQRLVPVMVMLPG 367
Score = 103 bits (220), Expect(3) = 3e-069
Identities = 39/42 (92%), Positives = 41/42 (97%)
Frame = +3 / +2
Query: 66 TTGGACGYGNLYSTGYGTSTAALSTALFNDGAACGSCYELRC 191
T GGACGYGNLYSTGYGT+TAALSTALFNDGAACGSCYEL+C
Sbjct: 224 TMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELKC 349
Score = 38.6 bits (78), Expect(2) = 4e-033
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = -2 / -2
Query: 172 DPHAAPSLNSAVLSAA 125
DPHAAPSLNSAVLSAA
Sbjct: 330 DPHAAPSLNSAVLSAA 283
Score = 23.5 bits (45), Expect(3) = 3e-069
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +1 / +2
Query: 448 WCW*PTWRA 474
WCW*P RA
Sbjct: 599 WCW*PRGRA 625
>gb|BG368613.1|BG368613 HVSMEi0019P07f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0019P07f, mRNA sequence
Length = 619
Score = 254 bits (550), Expect(2) = 7e-069
Identities = 101/119 (84%), Positives = 109/119 (91%)
Frame = +3 / +1
Query: 291 CNPPRPHFDMAEPAFLRIAQYRAGIVPVAFRRVPCVKKGGIRFTINGHSYFNLVLVTNVA 470
CNPPRPHFDMAEPAFL I QYRAGIVPV++RRVPCVKKGGIRFTINGHSYFNLVLVTNVA
Sbjct: 1 CNPPRPHFDMAEPAFLHIGQYRAGIVPVSYRRVPCVKKGGIRFTINGHSYFNLVLVTNVA 180
Query: 471 GAGDVRSVSIRGSRTGWQPMSRNWGQNWQSNSYLDRQALSFQVTASDGRTVTSNGAVPA 647
GAGD RSVSI+G+RTGWQ MSRNWG NWQS ++LD Q LSF+VT+SDGRTVTSN A PA
Sbjct: 181 GAGDARSVSIKGTRTGWQAMSRNWGMNWQSITFLDGQCLSFRVTSSDGRTVTSNAAGPA 357
Score = 236 bits (509), Expect = 2e-061
Identities = 102/131 (77%), Positives = 104/131 (79%)
Frame = -2 / -3
Query: 685 NWPPSKVWPNCQPAGTAPLLVTVRPSLAVTWNESACLSRYELLCQFWPQFRDMGCHPVRE 506
NW P KVW NCQPAG A LLVTVRPSL VT E SR +LCQF PQ RDM C PVR
Sbjct: 395 NWAP*KVWRNCQPAGPAALLVTVRPSLEVTLKERHWPSRKVMLCQFMPQLRDMACQPVRV 216
Query: 505 PRMETERTSPAPATLVTSTRLK*ECPLMVNRMPPFFTHGTLLNATGTMPARYCAMRRKAG 326
P M+TER SPAPATLVTSTRLK*E PLMVNRMPPFFTHGTLL TGTMPARYC M RKAG
Sbjct: 215 PLMDTERASPAPATLVTSTRLK*EWPLMVNRMPPFFTHGTLL*ETGTMPARYCPMWRKAG 36
Query: 325 SAMSKCGRGGL 293
SAMSK GRGGL
Sbjct: 35 SAMSKWGRGGL 3
Score = 55.6 bits (115), Expect(3) = 6e-023
Identities = 24/42 (57%), Positives = 25/42 (59%)
Frame = +2 / +3
Query: 317 HGRAGLPXXXXXXXXXXXXXXQESAVREEGRHPVHHQRALLL 442
HGRAGLP Q+ AVREEG HPVHHQR LLL
Sbjct: 27 HGRAGLPPHRAVPRRHRTRFLQKGAVREEGGHPVHHQRPLLL 152
Score = 55.1 bits (114), Expect(3) = 6e-023
Identities = 20/28 (71%), Positives = 20/28 (71%)
Frame = +1 / +2
Query: 448 WCW*PTWRAPATCAPSPSGAPARGGSPC 531
WCW*PTW APAT AP PS A A G PC
Sbjct: 158 WCW*PTWPAPATRAPCPSRARAPAGRPC 241
Score = 34.5 bits (69), Expect(3) = 6e-023
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +2 / +3
Query: 518 VAAHVPELGPELAEQLVPGQAGALVPG 598
+A HVP+LG ELAE +PG+ L+ G
Sbjct: 228 LAGHVPQLGHELAEHHLPGRPVPLLQG 308
Score = 26.7 bits (52), Expect(2) = 7e-069
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = +2 / +3
Query: 650 LAVRPDLRGRPVL 688
LAV PDL GRPVL
Sbjct: 360 LAVSPDLLGRPVL 398
>gb|BF256452.2|BF256452 HVSMEf0010A02f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0010A02f, mRNA sequence
Length = 839
Score = 191 bits (412), Expect(2) = 2e-068
Identities = 75/141 (53%), Positives = 101/141 (71%)
Frame = +3 / +1
Query: 222 TITVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLRIAQYRAGIVPVAFRRVPCVK 401
+I VTATNFCPPNYG P+D GG CNPP HF + AF +IA ++AG++P+ +RRV C++
Sbjct: 181 SIVVTATNFCPPNYGFPADAGGVCNPPNHHFLLPIQAFEKIALWKAGVMPIQYRRVKCLR 360
Query: 402 KGGIRFTINGHSYFNLVLVTNVAGAGDVRSVSIRGSRTGWQPMSRNWGQNWQSNSYLDRQ 581
+GG+RF+++G S+F VL++NV GAGDVRS I+G+ +GW M RNWGQ W L Q
Sbjct: 361 EGGVRFSVSGKSFFFTVLISNVGGAGDVRSRKIKGTDSGWLYMGRNWGQIWVIIFDLTGQ 540
Query: 582 ALSFQVTASDGRTVTSNGAVP 644
+SF +T DG T T+N VP
Sbjct: 541 PVSFGLTLGDGATKTNNYRVP 603
Score = 108 bits (230), Expect = 6e-023
Identities = 60/142 (42%), Positives = 72/142 (50%)
Frame = -2 / -1
Query: 649 PAGTAPLLVTVRPSLAVTWNESACLSRYELLCQFWPQFRDMGCHPVREPRMETERTSPAP 470
P GT L V V PS V+ ++ C R +++ WPQ R M P P + + TSPAP
Sbjct: 608 PWGTR*LFVFVAPSPKVSPKDTGCPVRSKIMTHIWPQLRPM*SQPESVPLIFLDLTSPAP 429
Query: 469 ATLVTSTRLK*ECPLMVNRMPPFFTHGTLLNATGTMPARYCAMRRKAGSAMSKCGRGGLH 290
TL+ T K P NR PP H T G PA A+ A K GGL
Sbjct: 428 PTLLIRTVKKKLFPETENRTPPSRRHLTRRYWMGMTPAFQSAIFSNAWMGRRKWWLGGLQ 249
Query: 289 QPPSSLGRP*LGGQKLVAVTVM 224
PP+S G+P*LGGQKLVAVT M
Sbjct: 248 TPPASAGKP*LGGQKLVAVTTM 183
Score = 88.1 bits (186), Expect(2) = 2e-068
Identities = 33/54 (61%), Positives = 40/54 (74%)
Frame = +3 / +1
Query: 72 GGACGYGNLYSTGYGTSTAALSTALFNDGAACGSCYELRCDNDGRWCLPGTITV 233
GGACG+G+L GYG +T LSTALF GAACG CYE++C D ++CLPGT V
Sbjct: 28 GGACGFGDLGKHGYGMATVGLSTALFERGAACGGCYEVKCVEDLKYCLPGTSIV 189
>gb|BI957392.1|BI957392 HVSMEn0009F06f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0009F06f, mRNA sequence
Length = 665
Score = 174 bits (374), Expect(3) = 3e-067
Identities = 62/81 (76%), Positives = 73/81 (90%)
Frame = +3 / +2
Query: 201 GRWCLPGTITVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLRIAQYRAGIVPVAF 380
G C+PG+IT+TATN CPPNY LP+DDGGWCNPPR HF MAEPA+L+I YRAGIVPV++
Sbjct: 191 GSSCVPGSITITATNLCPPNYALPNDDGGWCNPPRAHFXMAEPAYLQIGIYRAGIVPVSY 370
Query: 381 RRVPCVKKGGIRFTINGHSYF 443
RRVPCVKKGG+RFT+NGH+YF
Sbjct: 371 RRVPCVKKGGMRFTMNGHAYF 433
Score = 117 bits (250), Expect(2) = 1e-030
Identities = 54/78 (69%), Positives = 59/78 (75%)
Frame = -2 / -3
Query: 448 RLK*ECPLMVNRMPPFFTHGTLLNATGTMPARYCAMRRKAGSAMSKCGRGGLHQPPSSLG 269
RLK* P +VN +PPFFT GTL TGTMPAR + R AGSAM K RGGLHQPPSSLG
Sbjct: 438 RLK*AWPFIVNLIPPFFTQGTLR*ETGTMPAR*IPIWR*AGSAMXKWARGGLHQPPSSLG 259
Query: 268 RP*LGGQKLVAVTVMVPG 215
*LGGQ+LVAV VM+PG
Sbjct: 258 SA*LGGQRLVAVMVMLPG 205
Score = 97.7 bits (207), Expect(3) = 3e-067
Identities = 37/42 (88%), Positives = 39/42 (92%)
Frame = +3 / +2
Query: 66 TTGGACGYGNLYSTGYGTSTAALSTALFNDGAACGSCYELRC 191
T GGACGYGNLYSTGYGT+TAALSTALFNDGAACG CY L+C
Sbjct: 62 TMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGWCYXLKC 187
Score = 35.9 bits (72), Expect(2) = 1e-030
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = -2 / -3
Query: 169 PHAAPSLNSAVLSAA 125
PHAAPSLNSAVLSAA
Sbjct: 165 PHAAPSLNSAVLSAA 121
Score = 23.1 bits (44), Expect(3) = 3e-067
Identities = 6/10 (60%), Positives = 6/10 (60%)
Frame = +1 / +1
Query: 448 WCW*PTWRAP 477
W W PTW P
Sbjct: 439 WFWRPTWPGP 468
>gb|AL503556.1|AL503556 AL503556 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02J12T 5', mRNA sequence
Length = 700
Score = 116 bits (249), Expect(4) = 4e-065
Identities = 48/62 (77%), Positives = 54/62 (87%)
Frame = +3 / +3
Query: 327 PAFLRIAQYRAGIVPVAFRRVPCVKKGGIRFTINGHSYFNLVLVTNVAGAGDVRSVSIRG 506
P R RAGIVPV++RRVPCVKKGG+RFTINGHSYFNLVLVTNVAGAGDV+SV I+G
Sbjct: 357 PPTSRSVSTRAGIVPVSYRRVPCVKKGGMRFTINGHSYFNLVLVTNVAGAGDVQSVXIKG 536
Query: 507 SR 512
S+
Sbjct: 537 SK 542
Score = 103 bits (220), Expect(4) = 4e-065
Identities = 39/42 (92%), Positives = 41/42 (97%)
Frame = +3 / +1
Query: 66 TTGGACGYGNLYSTGYGTSTAALSTALFNDGAACGSCYELRC 191
T GGACGYGNLYSTGYGT+TAALSTALFNDGAACGSCYEL+C
Sbjct: 100 TMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELKC 225
Score = 90.9 bits (192), Expect(5) = 9e-034
Identities = 40/52 (76%), Positives = 43/52 (82%)
Frame = -2 / -1
Query: 508 EPRMETERTSPAPATLVTSTRLK*ECPLMVNRMPPFFTHGTLLNATGTMPAR 353
+P M T+ TSPAPATLVTSTRLK*E PLMVN +PPFFT GTL TGTMPAR
Sbjct: 538 DPLMXTDCTSPAPATLVTSTRLK*EWPLMVNLIPPFFTQGTLR*ETGTMPAR 383
Score = 59.3 bits (123), Expect(4) = 4e-065
Identities = 21/36 (58%), Positives = 24/36 (66%)
Frame = +3 / +2
Query: 246 FCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLRIAQY 353
F P P+ GWCNPPR HFDMAEPA+L+I Y
Sbjct: 275 FARPTTRCPTTTSGWCNPPRAHFDMAEPAYLQIGIY 382
Score = 57.0 bits (118), Expect(4) = 6e-031
Identities = 19/27 (70%), Positives = 23/27 (85%)
Frame = +3 / +1
Query: 201 GRWCLPGTITVTATNFCPPNYGLPSDD 281
G C+PG+IT+TATN CPPNY LP+DD
Sbjct: 229 GSSCVPGSITITATNLCPPNYALPNDD 309
Score = 53.3 bits (110), Expect(4) = 6e-031
Identities = 18/22 (81%), Positives = 22/22 (100%)
Frame = +2 / +3
Query: 74 RRLRVRQPVQHGVRHEHGGAEH 139
RR+R+R+PVQHG+RHEHGGAEH
Sbjct: 108 RRVRLREPVQHGLRHEHGGAEH 173
Score = 46.0 bits (94), Expect(4) = 6e-031
Identities = 16/24 (66%), Positives = 18/24 (75%)
Frame = +1 / +1
Query: 448 WCW*PTWRAPATCAPSPSGAPARG 519
WC *PTW APATC+PS S P+ G
Sbjct: 478 WCL*PTWPAPATCSPSXSRGPSSG 549
Score = 38.6 bits (78), Expect(5) = 9e-034
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = -2 / -3
Query: 172 DPHAAPSLNSAVLSAA 125
DPHAAPSLNSAVLSAA
Sbjct: 206 DPHAAPSLNSAVLSAA 159
Score = 38.6 bits (78), Expect(5) = 9e-034
Identities = 17/22 (77%), Positives = 19/22 (86%)
Frame = -2 / -3
Query: 280 SSLGRP*LGGQKLVAVTVMVPG 215
SSLG *LGGQ+LVAV VM+PG
Sbjct: 308 SSLGSA*LGGQRLVAVMVMLPG 243
Score = 33.6 bits (67), Expect(4) = 6e-031
Identities = 14/20 (70%), Positives = 15/20 (75%)
Frame = +2 / +2
Query: 383 ESAVREEGRHPVHHQRALLL 442
E A+ EEGR VHHQR LLL
Sbjct: 413 EGALCEEGRDEVHHQRPLLL 472
Score = 26.3 bits (51), Expect(4) = 4e-065
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +3 / +3
Query: 522 QPMSRNWGQNWQSN 563
+P S GQNWQSN
Sbjct: 555 RPCSATGGQNWQSN 596
Score = 25.4 bits (49), Expect(5) = 9e-034
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -2 / -1
Query: 562 LLCQFWPQFRDMG 524
LLCQFWP + G
Sbjct: 595 LLCQFWPPVAEHG 557
Score = 23.1 bits (44), Expect(5) = 9e-034
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -3 / -3
Query: 318 CRSAGAAGCT 289
CRS AAGCT
Sbjct: 347 CRSGRAAGCT 318
>gb|BF065271.3|BF065271 HV_CEb0024O07f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0024O07f, mRNA sequence
Length = 823
Score = 93.2 bits (197), Expect(5) = 9e-065
Identities = 36/42 (85%), Positives = 38/42 (90%)
Frame = +3 / +3
Query: 66 TTGGACGYGNLYSTGYGTSTAALSTALFNDGAACGSCYELRC 191
T GGAC Y NLYSTGYGT+TAALSTALFND AACGSCYEL+C
Sbjct: 228 TMGGACCYRNLYSTGYGTNTAALSTALFNDSAACGSCYELKC 353
Score = 88.1 bits (186), Expect(5) = 9e-065
Identities = 32/43 (74%), Positives = 35/43 (81%)
Frame = +3 / +1
Query: 246 FCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLRIAQYRAGIVPV 374
F P Y LP+D GGWCNPPR HFDMAEPA+L+I YRAGIVPV
Sbjct: 403 FARPTYALPNDHGGWCNPPRAHFDMAEPAYLQIGIYRAGIVPV 531
Score = 77.6 bits (163), Expect(5) = 9e-065
Identities = 30/39 (76%), Positives = 35/39 (89%)
Frame = +3 / +2
Query: 369 PVAFRRVPCVKKGGIRFTINGHSYFNLVLVTNVAGAGDV 485
P ++RR PCVKKGG+RFTINGHSYFNL L TNVAGAG++
Sbjct: 527 PFSYRRGPCVKKGGMRFTINGHSYFNLGLETNVAGAGNM 643
Score = 61.6 bits (128), Expect(4) = 4e-029
Identities = 29/44 (65%), Positives = 32/44 (72%)
Frame = -2 / -3
Query: 373 TGTMPARYCAMRRKAGSAMSKCGRGGLHQPPSSLGRP*LGGQKL 242
TGTMPAR + R AGSAMSK RGGLHQPP SLG *+G K+
Sbjct: 530 TGTMPAR*IPIWR*AGSAMSKWARGGLHQPPWSLGSA*VGRAKV 399
Score = 58.8 bits (122), Expect(4) = 4e-029
Identities = 25/32 (78%), Positives = 27/32 (84%)
Frame = -2 / -2
Query: 478 PAPATLVTSTRLK*ECPLMVNRMPPFFTHGTL 383
PAPATLV+S RLK*E PLMVN +PPFFT G L
Sbjct: 636 PAPATLVSSPRLK*EWPLMVNLIPPFFTQGPL 541
Score = 40.9 bits (83), Expect(5) = 9e-065
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +3 / +3
Query: 201 GRWCLPGTITVTATNFCPPN 260
G C+PG+IT+T TN CPPN
Sbjct: 357 GSSCVPGSITITVTNLCPPN 416
Score = 34.1 bits (68), Expect(4) = 4e-029
Identities = 15/16 (93%), Positives = 15/16 (93%)
Frame = -2 / -1
Query: 172 DPHAAPSLNSAVLSAA 125
DPHAA SLNSAVLSAA
Sbjct: 334 DPHAALSLNSAVLSAA 287
Score = 29.0 bits (57), Expect(4) = 4e-029
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = -2 / -1
Query: 259 LGGQKLVAVTVMVPG 215
LGGQ+LV V VM+PG
Sbjct: 415 LGGQRLVTVMVMLPG 371
Score = 23.1 bits (44), Expect(5) = 9e-065
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +3 / +1
Query: 492 VSIRGSRTGWQ 524
VS RGS +GWQ
Sbjct: 652 VSSRGSNSGWQ 684
>gb|CA022537.1|CA022537 HZ43I17r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ43I17
5-PRIME, mRNA sequence
Length = 522
Score = 246 bits (532), Expect = 1e-064
Identities = 94/104 (90%), Positives = 97/104 (93%)
Frame = +3 / +3
Query: 66 TTGGACGYGNLYSTGYGTSTAALSTALFNDGAACGSCYELRCDNDGRWCLPGTITVTATN 245
T GGACGYGNLYSTGYGT+TAALSTALFNDGAACGSCYELRCDN G C PG+I VTATN
Sbjct: 210 TMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELRCDNAGSSCRPGSIMVTATN 389
Query: 246 FCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLRIAQYRAGIVPVA 377
FCPPNYGLPSDDGGWCNPPRPHFDMAEPAFL IAQYRAGIVPV+
Sbjct: 390 FCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLHIAQYRAGIVPVS 521
Score = 145 bits (312), Expect = 3e-034
Identities = 66/83 (79%), Positives = 67/83 (80%)
Frame = -2 / -3
Query: 373 TGTMPARYCAMRRKAGSAMSKCGRGGLHQPPSSLGRP*LGGQKLVAVTVMVPGXXXXXXX 194
TGTMPARYCAM RKAGSAMSK GRGGLHQPPSSLGRP*LGGQKLVAVT+M PG
Sbjct: 517 TGTMPARYCAMWRKAGSAMSKWGRGGLHQPPSSLGRP*LGGQKLVAVTMMDPGRHELPAL 338
Query: 193 XXXXX*QDPHAAPSLNSAVLSAA 125
* DPHAAPSLNSAVLSAA
Sbjct: 337 SQRSS*HDPHAAPSLNSAVLSAA 269
>gb|AV917412.1|AV917412 AV917412 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags18m24 5', mRNA sequence
Length = 626
Score = 234 bits (505), Expect(2) = 2e-064
Identities = 94/110 (85%), Positives = 102/110 (92%)
Frame = +3 / +2
Query: 318 MAEPAFLRIAQYRAGIVPVAFRRVPCVKKGGIRFTINGHSYFNLVLVTNVAGAGDVRSVS 497
MAEPAFL IAQYRAGIVPV++RRVPCVKKGGIRFTINGHSYFNLVLVTNVAGAGD RSVS
Sbjct: 2 MAEPAFLHIAQYRAGIVPVSYRRVPCVKKGGIRFTINGHSYFNLVLVTNVAGAGDARSVS 181
Query: 498 IRGSRTGWQPMSRNWGQNWQSNSYLDRQALSFQVTASDGRTVTSNGAVPA 647
I+G+RTGWQ MSRNWG NWQSN++LD Q LSF+VT+SDGRTVTSN A PA
Sbjct: 182 IKGTRTGWQAMSRNWGMNWQSNTFLDGQCLSFRVTSSDGRTVTSNAAAPA 331
Score = 232 bits (500), Expect = 4e-060
Identities = 99/123 (80%), Positives = 100/123 (81%)
Frame = -2 / -3
Query: 685 NWPPSKVWPNCQPAGTAPLLVTVRPSLAVTWNESACLSRYELLCQFWPQFRDMGCHPVRE 506
NW PSKVWPNCQPAG A LLVTVRPSL VT E SR LLCQF PQ RDM C PVR
Sbjct: 369 NWAPSKVWPNCQPAGAAALLVTVRPSLEVTLKERHWPSRKVLLCQFMPQLRDMACQPVRV 190
Query: 505 PRMETERTSPAPATLVTSTRLK*ECPLMVNRMPPFFTHGTLLNATGTMPARYCAMRRKAG 326
P M+TER SPAPATLVTSTRLK*E PLMVNRMPPFFTHGTLL TGTMPARYCAM RKAG
Sbjct: 189 PLMDTERASPAPATLVTSTRLK*EWPLMVNRMPPFFTHGTLL*ETGTMPARYCAMWRKAG 10
Query: 325 SAM 317
SAM
Sbjct: 9 SAM 1
Score = 55.6 bits (115), Expect(3) = 1e-023
Identities = 24/42 (57%), Positives = 25/42 (59%)
Frame = +2 / +1
Query: 317 HGRAGLPXXXXXXXXXXXXXXQESAVREEGRHPVHHQRALLL 442
HGRAGLP Q+ AVREEG HPVHHQR LLL
Sbjct: 1 HGRAGLPPHRAVPRRHRTRLLQKGAVREEGGHPVHHQRPLLL 126
Score = 55.1 bits (114), Expect(3) = 1e-023
Identities = 20/28 (71%), Positives = 20/28 (71%)
Frame = +1 / +3
Query: 448 WCW*PTWRAPATCAPSPSGAPARGGSPC 531
WCW*PTW APAT AP PS A A G PC
Sbjct: 132 WCW*PTWPAPATRAPCPSRARAPAGRPC 215
Score = 36.8 bits (74), Expect(3) = 1e-023
Identities = 15/27 (55%), Positives = 20/27 (74%)
Frame = +2 / +1
Query: 518 VAAHVPELGPELAEQLVPGQAGALVPG 598
+A HVP+LG ELAEQ +PG+ L+ G
Sbjct: 202 LAGHVPQLGHELAEQHLPGRPVPLLQG 282
Score = 32.7 bits (65), Expect(2) = 2e-064
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +2 / +1
Query: 650 LAVRPDLRGRPVL 688
LAVRPDLRGRPVL
Sbjct: 334 LAVRPDLRGRPVL 372
>gb|BF619242.3|BF619242 HVSMEc0015J01f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0015J01f, mRNA sequence
Length = 563
Score = 246 bits (531), Expect = 2e-064
Identities = 95/111 (85%), Positives = 99/111 (89%)
Frame = +3 / +3
Query: 66 TTGGACGYGNLYSTGYGTSTAALSTALFNDGAACGSCYELRCDNDGRWCLPGTITVTATN 245
T GGACGYGNLYSTGYGT+TAALSTALFNDGAACGSCYELRCDN G C G+I VTATN
Sbjct: 231 TMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELRCDNAGSSCRAGSIMVTATN 410
Query: 246 FCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLRIAQYRAGIVPVAFRRVPCV 398
FCPPNYGLPSDDGGWCNPPRPHFDMAEPAFL IAQYRAGIVP +R+ P V
Sbjct: 411 FCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLHIAQYRAGIVPCFYRKGPGV 563
Score = 138 bits (295), Expect = 7e-032
Identities = 65/91 (71%), Positives = 66/91 (72%)
Frame = -2 / -2
Query: 397 THGTLLNATGTMPARYCAMRRKAGSAMSKCGRGGLHQPPSSLGRP*LGGQKLVAVTVMVP 218
T G L GTMPARYCAM RKAGSAMSK GRGGLH PPSSLG P*LGGQKLVAVT+M P
Sbjct: 562 TPGPFL*KQGTMPARYCAM*RKAGSAMSKWGRGGLHHPPSSLGSP*LGGQKLVAVTMMDP 383
Query: 217 GXXXXXXXXXXXX*QDPHAAPSLNSAVLSAA 125
* DPHAAPSLNSAVLSAA
Sbjct: 382 ARHELPALSQRSS*HDPHAAPSLNSAVLSAA 290
>gb|BQ766646.1|BQ766646 EBro08_SQ006_P15_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ006_P15 5', mRNA sequence
Length = 454
Score = 244 bits (528), Expect = 5e-064
Identities = 94/142 (66%), Positives = 109/142 (76%)
Frame = +3 / +1
Query: 219 GTITVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLRIAQYRAGIVPVAFRRVPCV 398
G+ VTATN CP NY ++DGGWCNPP+ HFD+AEP F RIAQ RAG+VPV +RRV CV
Sbjct: 1 GSAMVTATNLCPANYARANNDGGWCNPPQSHFDLAEPVFTRIAQARAGVVPVQYRRVACV 180
Query: 399 KKGGIRFTINGHSYFNLVLVTNVAGAGDVRSVSIRGSRTGWQPMSRNWGQNWQSNSYLDR 578
K GGIRFTI GHSYFNLVL+TNVAGAGD+ SV ++ TGW MS NWG NWQ+ + L+
Sbjct: 181 KTGGIRFTITGHSYFNLVLITNVAGAGDLMSVYVKAPSTGWLTMSHNWGANWQNGAMLNG 360
Query: 579 QALSFQVTASDGRTVTSNGAVP 644
Q LSF+VT SDGRT TSN P
Sbjct: 361 QPLSFRVTTSDGRTTTSNNVAP 426
Score = 170 bits (366), Expect = 1e-041
Identities = 85/148 (57%), Positives = 91/148 (61%)
Frame = -2 / -3
Query: 670 KVWPNCQPAGTAPLLVTVRPSLAVTWNESACLSRYELLCQFWPQFRDMGCHPVREPRMET 491
KVWP QP G L V VRPSL VT +S CQ PQ M HPV T
Sbjct: 452 KVWPKVQP*GATLLDVVVRPSLVVTRKDSGWPLSMAPFCQLAPQLWLMVSHPVLGAFTYT 273
Query: 490 ERTSPAPATLVTSTRLK*ECPLMVNRMPPFFTHGTLLNATGTMPARYCAMRRKAGSAMSK 311
+ SPAPATLV STRLK*E P+MVNRMPP TH TLL TGT PAR A+ GSA SK
Sbjct: 272 DIRSPAPATLVMSTRLK*EWPVMVNRMPPVLTHATLLYWTGTTPARAWAILVNTGSARSK 93
Query: 310 CGRGGLHQPPSSLGRP*LGGQKLVAVTV 227
C GGLH PPS L R *L GQ+LVAVT+
Sbjct: 92 CDCGGLHHPPSLLARA*LAGQRLVAVTM 9
>gb|BQ766938.1|BQ766938 EBro08_SQ007_D18_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ007_D18 5', mRNA sequence
Length = 629
Score = 177 bits (382), Expect(2) = 2e-063
Identities = 67/104 (64%), Positives = 83/104 (79%)
Frame = +3 / +3
Query: 222 TITVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLRIAQYRAGIVPVAFRRVPCVK 401
+IT+TATNFCPPNY L SD+GGWCNPPR HFDM++PA+ IA Y+AGIVPV ++RVPC +
Sbjct: 318 SITITATNFCPPNYALASDNGGWCNPPRQHFDMSQPAWETIAIYQAGIVPVNYKRVPCQR 497
Query: 402 KGGIRFTINGHSYFNLVLVTNVAGAGDVRSVSIRGSRTGWQPMS 533
GG+RFTING+ YF LV V NV G+G V + I+GS+T W MS
Sbjct: 498 SGGMRFTINGNDYFELVTVANVGGSGVVSQMWIKGSKTDWMVMS 629
Score = 117 bits (250), Expect(2) = 5e-027
Identities = 58/97 (59%), Positives = 61/97 (62%)
Frame = -2 / -2
Query: 514 VREPRMETERTSPAPATLVTSTRLK*ECPLMVNRMPPFFTHGTLLNATGTMPARYCAMRR 335
V +P + T+P P T T T K* PLMVN MPP GTLL TGTMPA AM
Sbjct: 610 VLDPLIHIWDTTPLPPTFATVTSSK*SFPLMVNLMPPLLWQGTLL*LTGTMPAW*MAMVS 431
Query: 334 KAGSAMSKCGRGGLHQPPSSLGRP*LGGQKLVAVTVM 224
AG MSKC RGGLH PP SL R *LGGQKLVAV VM
Sbjct: 430 HAGCDMSKCCRGGLHHPPLSLARA*LGGQKLVAVMVM 320
Score = 85.8 bits (181), Expect(2) = 2e-063
Identities = 30/43 (69%), Positives = 37/43 (86%)
Frame = +3 / +3
Query: 66 TTGGACGYGNLYSTGYGTSTAALSTALFNDGAACGSCYELRCD 194
T GGACGYGNLY+ GYG ++AALSTALFN+GA+CG C+ + CD
Sbjct: 156 TMGGACGYGNLYNAGYGVNSAALSTALFNNGASCGMCFTITCD 284
Score = 24.0 bits (46), Expect(2) = 5e-027
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -2 / -2
Query: 169 PHAAPSLNSAVLSAA 125
PH AP L AVL+AA
Sbjct: 259 PHDAPLLKRAVLNAA 215
>gb|CA025602.1|CA025602 HZ52K01r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ52K01
5-PRIME, mRNA sequence
Length = 418
Score = 180 bits (387), Expect(2) = 5e-061
Identities = 68/91 (74%), Positives = 78/91 (85%)
Frame = +3 / +2
Query: 243 NFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLRIAQYRAGIVPVAFRRVPCVKKGGIRFT 422
NFCPPN+G SD GGWCNPPR HFDM++P F RIA YRAGIVPV++RRV C KKGGIRFT
Sbjct: 17 NFCPPNFGESSDAGGWCNPPRAHFDMSQPVFQRIALYRAGIVPVSYRRVACQKKGGIRFT 196
Query: 423 INGHSYFNLVLVTNVAGAGDVRSVSIRGSRT 515
INGHSYFNLVLVTNV G GDV +VS++ +R+
Sbjct: 197 INGHSYFNLVLVTNVGGPGDVHAVSVKSTRS 289
Score = 124 bits (265), Expect(2) = 1e-035
Identities = 58/85 (68%), Positives = 61/85 (71%)
Frame = -2 / -2
Query: 496 ETERTSPAPATLVTSTRLK*ECPLMVNRMPPFFTHGTLLNATGTMPARYCAMRRKAGSAM 317
+T TSP P TLVTSTRLK E PL+VN MPPFF H TL TGTMPAR AMR K G M
Sbjct: 270 DTACTSPGPPTLVTSTRLKYEWPLIVNLMPPFFWHATLR*ETGTMPAR*SAMRWKTGWDM 91
Query: 316 SKCGRGGLHQPPSSLGRP*LGGQKL 242
SK RGGLHQPP+S P LGGQKL
Sbjct: 90 SKWARGGLHQPPASDDSPKLGGQKL 16
Score = 75.3 bits (158), Expect(2) = 5e-061
Identities = 28/41 (68%), Positives = 34/41 (82%)
Frame = +3 / +2
Query: 519 WQPMSRNWGQNWQSNSYLDRQALSFQVTASDGRTVTSNGAV 641
WQ +SRNWGQNWQSN+ LD Q LSF+VTA +G++V SN AV
Sbjct: 296 WQALSRNWGQNWQSNALLDGQGLSFRVTAGNGQSVVSNNAV 418
Score = 46.0 bits (94), Expect(2) = 1e-035
Identities = 22/41 (53%), Positives = 23/41 (56%)
Frame = -2 / -2
Query: 640 TAPLLVTVRPSLAVTWNESACLSRYELLCQFWPQFRDMGCH 518
TA L T P AVT NE C S LLCQF PQ R+ CH
Sbjct: 417 TALLETTDWPLPAVTRNERPCPSSSALLCQFCPQLRESACH 295
>gb|BU989542.1|BU989542 HF22A11r HF Hordeum vulgare subsp. vulgare cDNA clone HF22A11
5-PRIME, mRNA sequence
Length = 620
Score = 204 bits (440), Expect(2) = 5e-058
Identities = 77/141 (54%), Positives = 106/141 (75%)
Frame = +3 / +3
Query: 222 TITVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLRIAQYRAGIVPVAFRRVPCVK 401
+I VTATNFCPPNYG P+D GG CNPP HF + AF +IA ++AG++P+ +RRV C++
Sbjct: 63 SIVVTATNFCPPNYGFPADAGGVCNPPNHHFLLPIQAFEKIALWKAGVMPIQYRRVKCLR 242
Query: 402 KGGIRFTINGHSYFNLVLVTNVAGAGDVRSVSIRGSRTGWQPMSRNWGQNWQSNSYLDRQ 581
+GG+RF+++G S+F VL++NV GAGDVRSV I+G+ +GW M RNWGQ W N L Q
Sbjct: 243 EGGVRFSVSGKSFFFTVLISNVGGAGDVRSVKIKGTDSGWLDMGRNWGQIWHINLDLTGQ 422
Query: 582 ALSFQVTASDGRTVTSNGAVP 644
+SF++T+SDG T+T+ VP
Sbjct: 423 PVSFELTSSDGTTMTNFNVVP 485
Score = 127 bits (273), Expect = 7e-029
Identities = 68/155 (43%), Positives = 80/155 (51%)
Frame = -2 / -2
Query: 688 QNWPPSKVWPNCQPAGTAPLLVTVRPSLAVTWNESACLSRYELLCQFWPQFRDMGCHPVR 509
+N P V PN Q GT V V PSL V+ ++ C R +L+C WPQ R M P
Sbjct: 529 RNCLPVYVLPNSQSLGTTLKFVIVVPSLEVSSKDTGCPVRSKLMCHIWPQLRPMSSQPES 350
Query: 508 EPRMETERTSPAPATLVTSTRLK*ECPLMVNRMPPFFTHGTLLNATGTMPARYCAMRRKA 329
P + T+ TSPAP TL+ T K P NR PP H T G PA A+ A
Sbjct: 349 VPLIFTDLTSPAPPTLLIRTVKKKLFPETENRTPPSRRHLTRRYWMGMTPAFQSAIFSNA 170
Query: 328 GSAMSKCGRGGLHQPPSSLGRP*LGGQKLVAVTVM 224
K GGL PP+S G+P*LGGQKLVAVT M
Sbjct: 169 WMGRRKWWLGGLQTPPASAGKP*LGGQKLVAVTTM 65
Score = 40.9 bits (83), Expect(2) = 5e-058
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +3 / +3
Query: 165 CGSCYELRCDNDGRWCLPGTITV 233
CG CYE++C D ++CLPGT V
Sbjct: 3 CGGCYEVKCVEDLKYCLPGTSIV 71
>gb|BU990552.1|BU990552 HF25G07r HF Hordeum vulgare subsp. vulgare cDNA clone HF25G07
5-PRIME, mRNA sequence
Length = 565
Score = 204 bits (440), Expect(2) = 5e-058
Identities = 77/141 (54%), Positives = 106/141 (75%)
Frame = +3 / +3
Query: 222 TITVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLRIAQYRAGIVPVAFRRVPCVK 401
+I VTATNFCPPNYG P+D GG CNPP HF + AF +IA ++AG++P+ +RRV C++
Sbjct: 63 SIVVTATNFCPPNYGFPADAGGVCNPPNHHFLLPIQAFEKIALWKAGVMPIQYRRVKCLR 242
Query: 402 KGGIRFTINGHSYFNLVLVTNVAGAGDVRSVSIRGSRTGWQPMSRNWGQNWQSNSYLDRQ 581
+GG+RF+++G S+F VL++NV GAGDVRSV I+G+ +GW M RNWGQ W N L Q
Sbjct: 243 EGGVRFSVSGKSFFFTVLISNVGGAGDVRSVKIKGTDSGWLDMGRNWGQIWHINLDLTGQ 422
Query: 582 ALSFQVTASDGRTVTSNGAVP 644
+SF++T+SDG T+T+ VP
Sbjct: 423 PVSFELTSSDGTTMTNFNVVP 485
Score = 127 bits (273), Expect = 7e-029
Identities = 68/155 (43%), Positives = 80/155 (51%)
Frame = -2 / -1
Query: 688 QNWPPSKVWPNCQPAGTAPLLVTVRPSLAVTWNESACLSRYELLCQFWPQFRDMGCHPVR 509
+N P V PN Q GT V V PSL V+ ++ C R +L+C WPQ R M P
Sbjct: 529 RNCLPVYVLPNSQSLGTTLKFVIVVPSLEVSSKDTGCPVRSKLMCHIWPQLRPMSSQPES 350
Query: 508 EPRMETERTSPAPATLVTSTRLK*ECPLMVNRMPPFFTHGTLLNATGTMPARYCAMRRKA 329
P + T+ TSPAP TL+ T K P NR PP H T G PA A+ A
Sbjct: 349 VPLIFTDLTSPAPPTLLIRTVKKKLFPETENRTPPSRRHLTRRYWMGMTPAFQSAIFSNA 170
Query: 328 GSAMSKCGRGGLHQPPSSLGRP*LGGQKLVAVTVM 224
K GGL PP+S G+P*LGGQKLVAVT M
Sbjct: 169 WMGRRKWWLGGLQTPPASAGKP*LGGQKLVAVTTM 65
Score = 40.9 bits (83), Expect(2) = 5e-058
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +3 / +3
Query: 165 CGSCYELRCDNDGRWCLPGTITV 233
CG CYE++C D ++CLPGT V
Sbjct: 3 CGGCYEVKCVEDLKYCLPGTSIV 71
>gb|BG368084.2|BG368084 HVSMEi0015J17f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0015J17f, mRNA sequence
Length = 852
Score = 147 bits (315), Expect(3) = 2e-057
Identities = 54/68 (79%), Positives = 59/68 (86%)
Frame = +3 / +1
Query: 222 TITVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLRIAQYRAGIVPVAFRRVPCVK 401
+I VTATNFCPPNY LPSDDGGWCNPPRPHFD+A P FL +AQYRAGIVPV +RRV C K
Sbjct: 397 SIVVTATNFCPPNYALPSDDGGWCNPPRPHFDLAMPMFLHMAQYRAGIVPVCYRRVACRK 576
Query: 402 KGGIRFTI 425
GG+RFTI
Sbjct: 577 SGGVRFTI 600
Score = 106 bits (226), Expect(2) = 6e-025
Identities = 52/84 (61%), Positives = 55/84 (65%)
Frame = -2 / -2
Query: 475 APATLVTSTRLK*ECPLMVNRMPPFFTHGTLLNATGTMPARYCAMRRKAGSAMSKCGRGG 296
AP + +S R + MVNR PP F H T TGTMPARY AM R G A SK GRGG
Sbjct: 650 APLLVFSSLRSELCTRSMVNRTPPDFRHATRR*QTGTMPARYWAMWRNMGMARSKWGRGG 471
Query: 295 LHQPPSSLGRP*LGGQKLVAVTVM 224
LHQPPSS G *LGGQKLVAVT M
Sbjct: 470 LHQPPSSEGSA*LGGQKLVAVTTM 399
Score = 92.7 bits (196), Expect(3) = 2e-057
Identities = 33/48 (68%), Positives = 39/48 (81%)
Frame = +3 / +1
Query: 66 TTGGACGYGNLYSTGYGTSTAALSTALFNDGAACGSCYELRCDNDGRW 209
T GGACGYGNLYS GYG + AALSTALFN+G +CG+C+E+RC N W
Sbjct: 229 TMGGACGYGNLYSQGYGVNNAALSTALFNEGQSCGACFEIRCVNQPGW 372
Score = 28.1 bits (55), Expect(2) = 6e-025
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = -2 / -2
Query: 169 PHAAPSLNSAVLSAA 125
P PSLNSAVLSAA
Sbjct: 332 PQLCPSLNSAVLSAA 288
Score = 22.1 bits (42), Expect(3) = 2e-057
Identities = 6/12 (50%), Positives = 8/12 (66%)
Frame = +3 / +1
Query: 207 WCLPGTITVTAT 242
WCLPG ++ T
Sbjct: 376 WCLPGKPSIVVT 411
>gb|BU990530.1|BU990530 HF25F05r HF Hordeum vulgare subsp. vulgare cDNA clone HF25F05
5-PRIME, mRNA sequence
Length = 515
Score = 221 bits (478), Expect = 4e-057
Identities = 85/123 (69%), Positives = 97/123 (78%)
Frame = +3 / +1
Query: 276 DDGGWCNPPRPHFDMAEPAFLRIAQYRAGIVPVAFRRVPCVKKGGIRFTINGHSYFNLVL 455
DDGGWCNPP+ HFD+AEP F RIAQ RAG+VPV +RRV CVK GGIRFTI GHSYFNLVL
Sbjct: 10 DDGGWCNPPQSHFDLAEPVFTRIAQARAGVVPVQYRRVACVKTGGIRFTITGHSYFNLVL 189
Query: 456 VTNVAGAGDVRSVSIRGSRTGWQPMSRNWGQNWQSNSYLDRQALSFQVTASDGRTVTSNG 635
+TNVAGAGD+ SV ++ TGW MS NWG NWQ+ + L+ Q LSF+VT SDGRT TSN
Sbjct: 190 ITNVAGAGDLMSVYVKAPSTGWLTMSHNWGANWQNGAMLNGQPLSFRVTTSDGRTTTSNN 369
Query: 636 AVP 644
P
Sbjct: 370 VAP 378
Score = 161 bits (346), Expect = 6e-039
Identities = 78/137 (56%), Positives = 83/137 (60%)
Frame = -2 / -1
Query: 685 NWPPSKVWPNCQPAGTAPLLVTVRPSLAVTWNESACLSRYELLCQFWPQFRDMGCHPVRE 506
NW P+KVWP QP G L V VRPSL VT +S CQ PQ M HPV
Sbjct: 419 NWLPAKVWPKVQP*GATLLDVVVRPSLVVTRKDSGWPLSMAPFCQLAPQLWLMVSHPVLG 240
Query: 505 PRMETERTSPAPATLVTSTRLK*ECPLMVNRMPPFFTHGTLLNATGTMPARYCAMRRKAG 326
T+ SPAPATLV STRLK*E P+MVNRMPP TH TLL TGT PAR A+ G
Sbjct: 239 AFTYTDIRSPAPATLVMSTRLK*EWPVMVNRMPPVLTHATLLYWTGTTPARAWAILVNTG 60
Query: 325 SAMSKCGRGGLHQPPSS 275
SA SKC GGLH PPSS
Sbjct: 59 SARSKCDCGGLHHPPSS 9
>gb|CA017681.1|CA017681 HV05O14r HV Hordeum vulgare subsp. vulgare cDNA clone HV05O14
5-PRIME, mRNA sequence
Length = 443
Score = 138 bits (296), Expect(2) = 1e-056
Identities = 49/72 (68%), Positives = 60/72 (83%)
Frame = +3 / +2
Query: 222 TITVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLRIAQYRAGIVPVAFRRVPCVK 401
T+T+TATN CP +Y P+D+GGWCNPPR H DMA+PA+ RI YRAGIVPV F+RVPC +
Sbjct: 227 TVTITATNLCPTDYSKPNDNGGWCNPPRKHLDMAQPAWERIGIYRAGIVPVLFQRVPCSR 406
Query: 402 KGGIRFTINGHS 437
GG+RFTINGH+
Sbjct: 407 SGGVRFTINGHA 442
Score = 102 bits (217), Expect(2) = 1e-056
Identities = 40/61 (65%), Positives = 47/61 (77%)
Frame = +3 / +2
Query: 60 ARTTGGACGYGNLYSTGYGTSTAALSTALFNDGAACGSCYELRCDNDGRWCLPGTITVTA 239
A T GGACGYGNLY+TGYGT+TAALST+LFNDGAACG CY+++CD +TVT
Sbjct: 59 AGTMGGACGYGNLYATGYGTNTAALSTSLFNDGAACGECYQVQCDRGSSPNCKPGVTVTI 238
Query: 240 T 242
T
Sbjct: 239 T 241
Score = 99.6 bits (211), Expect(2) = 6e-023
Identities = 46/70 (65%), Positives = 48/70 (68%)
Frame = -2 / -3
Query: 430 PLMVNRMPPFFTHGTLLNATGTMPARYCAMRRKAGSAMSKCGRGGLHQPPSSLGRP*LGG 251
PLMVNR PP GT N TGTMPAR MR AG AMS+C RGGLHQPP SLG * G
Sbjct: 435 PLMVNRTPPLLEQGTRWNRTGTMPAR*MPMRSHAGCAMSRCLRGGLHQPPLSLGLE*SVG 256
Query: 250 QKLVAVTVMV 221
Q+LVAV V V
Sbjct: 255 QRLVAVMVTV 226
Score = 28.1 bits (55), Expect(2) = 6e-023
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = -2 / -3
Query: 169 PHAAPSLNSAVLSAA 125
PHAAPSL VLSAA
Sbjct: 168 PHAAPSLKRDVLSAA 124
>gb|BU989257.1|BU989257 HF21D19r HF Hordeum vulgare subsp. vulgare cDNA clone HF21D19
5-PRIME, mRNA sequence
Length = 522
Score = 204 bits (440), Expect(2) = 2e-055
Identities = 77/141 (54%), Positives = 106/141 (75%)
Frame = +3 / +3
Query: 222 TITVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLRIAQYRAGIVPVAFRRVPCVK 401
+I VTATNFCPPNYG P+D GG CNPP HF + AF +IA ++AG++P+ +RRV C++
Sbjct: 63 SIVVTATNFCPPNYGFPADAGGVCNPPNHHFLLPIQAFEKIALWKAGVMPIQYRRVKCLR 242
Query: 402 KGGIRFTINGHSYFNLVLVTNVAGAGDVRSVSIRGSRTGWQPMSRNWGQNWQSNSYLDRQ 581
+GG+RF+++G S+F VL++NV GAGDVRSV I+G+ +GW M RNWGQ W N L Q
Sbjct: 243 EGGVRFSVSGKSFFFTVLISNVGGAGDVRSVKIKGTDSGWLDMGRNWGQIWHINLDLTGQ 422
Query: 582 ALSFQVTASDGRTVTSNGAVP 644
+SF++T+SDG T+T+ VP
Sbjct: 423 PVSFELTSSDGTTMTNFNVVP 485
Score = 127 bits (271), Expect = 1e-028
Identities = 67/151 (44%), Positives = 78/151 (51%)
Frame = -2 / -3
Query: 676 PSKVWPNCQPAGTAPLLVTVRPSLAVTWNESACLSRYELLCQFWPQFRDMGCHPVREPRM 497
P V PN Q GT V V PSL V+ ++ C R +L+C WPQ R M P P +
Sbjct: 517 PVYVLPNSQSLGTTLKFVIVVPSLEVSSKDTGCPVRSKLMCHIWPQLRPMSSQPESVPLI 338
Query: 496 ETERTSPAPATLVTSTRLK*ECPLMVNRMPPFFTHGTLLNATGTMPARYCAMRRKAGSAM 317
T+ TSPAP TL+ T K P NR PP H T G PA A+ A
Sbjct: 337 FTDLTSPAPPTLLIRTVKKKLFPETENRTPPSRRHLTRRYWMGMTPAFQSAIFSNAWMGR 158
Query: 316 SKCGRGGLHQPPSSLGRP*LGGQKLVAVTVM 224
K GGL PP+S G+P*LGGQKLVAVT M
Sbjct: 157 RKWWLGGLQTPPASAGKP*LGGQKLVAVTTM 65
Score = 32.2 bits (64), Expect(2) = 2e-055
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3 / +3
Query: 165 CGSCYELRCDNDGRWCLPGTITV 233
CG Y ++C D ++CLPGT V
Sbjct: 3 CGG*YAVKCVEDLKYCLPGTSIV 71
>gb|CA017256.1|CA017256 HV14F10u HV Hordeum vulgare subsp. vulgare cDNA clone HV14F10
3-PRIME, mRNA sequence
Length = 532
Score = 215 bits (463), Expect = 4e-055
Identities = 82/136 (60%), Positives = 103/136 (75%)
Frame = +3 / -3
Query: 240 TNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLRIAQYRAGIVPVAFRRVPCVKKGGIRF 419
TNFCPPN+ LPS++GGWCNPPR HFDM++PA+ IA Y+AGIVPV ++RV C K+ GIRF
Sbjct: 530 TNFCPPNWALPSNNGGWCNPPRLHFDMSQPAWTSIAIYQAGIVPVMYKRVSCQKRDGIRF 351
Query: 420 TINGHSYFNLVLVTNVAGAGDVRSVSIRGSRTGWQPMSRNWGQNWQSNSYLDRQALSFQV 599
I+G YF LV+VTNV G+G V + I+GS T W MSRNWG NWQSN+YL+ Q LSF+V
Sbjct: 350 GISGRDYFELVVVTNVGGSGVVVQMWIKGSNTNWLAMSRNWGANWQSNAYLNGQRLSFRV 171
Query: 600 TASDGRTVTSNGAVPA 647
DGR T++ P+
Sbjct: 170 RLDDGREATASDVAPS 123
Score = 136 bits (292), Expect = 2e-031
Identities = 75/143 (52%), Positives = 81/143 (56%)
Frame = -2 / +1
Query: 667 VWPNCQPAGTAPLLVTVRPSLAVTWNESACLSRYELLCQFWPQFRDMGCHPVREPRMETE 488
V PN Q G L V RPS ++T ES R LLCQF PQFR M V EP +
Sbjct: 103 VAPNHQLDGATSLAVASRPSSSLTLKESLWPLR*ALLCQFAPQFRLMASQLVLEPLIHIC 282
Query: 487 RTSPAPATLVTSTRLK*ECPLMVNRMPPFFTHGTLLNATGTMPARYCAMRRKAGSAMSKC 308
T+P P TLVT+T K* P M RMP F TLL TGTMPA AM +AG MSK
Sbjct: 283 TTTPLPPTLVTTTSSK*SLPEMPKRMPSRFWQETLLYMTGTMPAW*MAMLVQAGCDMSKW 462
Query: 307 GRGGLHQPPSSLGRP*LGGQKLV 239
RGGLH PP LG LGGQKLV
Sbjct: 463 RRGGLHHPPLLLGSAQLGGQKLV 531
>gb|BI953531.1|BI953531 HVSMEm0013B19f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0013B19f, mRNA sequence
Length = 626
Score = 212 bits (458), Expect = 2e-054
Identities = 81/91 (89%), Positives = 85/91 (93%)
Frame = +3 / +3
Query: 114 GTSTAALSTALFNDGAACGSCYELRCDNDGRWCLPGTITVTATNFCPPNYGLPSDDGGWC 293
GT+TAALSTALFNDGAACGSCYELRCDN G C PG+I VTATNFCPPNYGLPSDDGGWC
Sbjct: 3 GTNTAALSTALFNDGAACGSCYELRCDNAGSSCRPGSIMVTATNFCPPNYGLPSDDGGWC 182
Query: 294 NPPRPHFDMAEPAFLRIAQYRAGIVPVAFRR 386
NPPRPHFDMAEPAFL IAQYRAGIVPV++RR
Sbjct: 183 NPPRPHFDMAEPAFLHIAQYRAGIVPVSYRR 275
Score = 147 bits (315), Expect = 1e-034
Identities = 68/87 (78%), Positives = 69/87 (79%)
Frame = -2 / -2
Query: 385 LLNATGTMPARYCAMRRKAGSAMSKCGRGGLHQPPSSLGRP*LGGQKLVAVTVMVPGXXX 206
LL TGTMPARYCAM RKAGSAMSK GRGGLHQPPSSLGRP*LGGQKLVAVT+M PG
Sbjct: 274 LL*ETGTMPARYCAMWRKAGSAMSKWGRGGLHQPPSSLGRP*LGGQKLVAVTMMDPGRHE 95
Query: 205 XXXXXXXXX*QDPHAAPSLNSAVLSAA 125
* DPHAAPSLNSAVLSAA
Sbjct: 94 LPALSQRSS*HDPHAAPSLNSAVLSAA 14
>gb|BI777322.2|BI777322 EBro03_SQ002_N24_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ002_N24 5', mRNA sequence
Length = 370
Score = 203 bits (437), Expect = 2e-051
Identities = 71/111 (63%), Positives = 94/111 (84%)
Frame = +3 / +1
Query: 222 TITVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLRIAQYRAGIVPVAFRRVPCVK 401
+ITV+ATNFCPPN+ LPSD+GGWCNPPR HFDM++PA+ I YRAGI+PV +++V C +
Sbjct: 34 SITVSATNFCPPNWDLPSDNGGWCNPPRHHFDMSQPAWENIGIYRAGIIPVFYQQVKCWR 213
Query: 402 KGGIRFTINGHSYFNLVLVTNVAGAGDVRSVSIRGSRTGWQPMSRNWGQNW 554
+GG+RFTING +YF LVLV N+AG+G ++S+S++G+ T W PMSRNWG NW
Sbjct: 214 QGGVRFTINGFNYFELVLVANIAGSGSIKSMSVKGTNTAWIPMSRNWGANW 366
Score = 122 bits (261), Expect = 3e-027
Identities = 62/111 (55%), Positives = 66/111 (59%)
Frame = -2 / -3
Query: 556 CQFWPQFRDMGCHPVREPRMETERTSPAPATLVTSTRLK*ECPLMVNRMPPFFTHGTLLN 377
CQ PQF D+G H V P + P PA L T+T K* PLMVNR PP H T
Sbjct: 368 CQLAPQFLDIGIHAVLVPFTDMLLIDPLPAMLATNTSSK*LKPLMVNRTPPCLQHLTCW* 189
Query: 376 ATGTMPARYCAMRRKAGSAMSKCGRGGLHQPPSSLGRP*LGGQKLVAVTVM 224
TG MPAR M +AG MSK RGGLH PP SLGR LGGQKLVA TVM
Sbjct: 188 KTGMMPAR*MPMFSQAGCDMSKW*RGGLHHPPLSLGRSQLGGQKLVAETVM 36
>gb|BQ461074.1|BQ461074 HE01E19r HE Hordeum vulgare subsp. vulgare cDNA clone HE01E19
5-PRIME, mRNA sequence
Length = 397
Score = 172 bits (371), Expect(2) = 2e-051
Identities = 65/96 (67%), Positives = 78/96 (81%)
Frame = +3 / +2
Query: 360 GIVPVAFRRVPCVKKGGIRFTINGHSYFNLVLVTNVAGAGDVRSVSIRGSRTGWQPMSRN 539
GIVPV ++RVPC KKGG+RFT+NGH YF LVLV+NV G +RSVSI+GSRTGW PMSRN
Sbjct: 86 GIVPVLYQRVPCAKKGGVRFTVNGHDYFELVLVSNVGSVGSIRSVSIKGSRTGWMPMSRN 265
Query: 540 WGQNWQSNSYLDRQALSFQVTASDGRTVTSNGAVPA 647
WG NWQSN+ L Q+LSFQVT++DG+T+T PA
Sbjct: 266 WGVNWQSNALLSGQSLSFQVTSTDGQTITFPNVAPA 373
Score = 123 bits (264), Expect(2) = 1e-032
Identities = 56/104 (53%), Positives = 61/104 (58%)
Frame = -2 / -2
Query: 670 KVWPNCQPAGTAPLLVTVRPSLAVTWNESACLSRYELLCQFWPQFRDMGCHPVREPRMET 491
KVWP PAG V V PS+ VTWNE C L CQ PQF DMG HPVR+P M+T
Sbjct: 396 KVWPKPHPAGATLGKVIVWPSVLVTWNERLCPLSSALDCQLTPQFLDMGIHPVRDPLMDT 217
Query: 490 ERTSPAPATLVTSTRLK*ECPLMVNRMPPFFTHGTLLNATGTMP 359
+R P TL+TST K* PL VN PPF GT TGTMP
Sbjct: 216 DRMEPTLPTLLTSTSSK*SWPLTVNLTPPFLAQGTRW*RTGTMP 85
Score = 50.6 bits (104), Expect(2) = 2e-051
Identities = 16/22 (72%), Positives = 20/22 (90%)
Frame = +3 / +2
Query: 222 TITVTATNFCPPNYGLPSDDGG 287
++T+TATN CPPNY LP+DDGG
Sbjct: 23 SVTITATNLCPPNYALPNDDGG 88
Score = 36.3 bits (73), Expect(2) = 1e-032
Identities = 16/20 (80%), Positives = 17/20 (85%)
Frame = -2 / -2
Query: 286 PPSSLGRP*LGGQKLVAVTV 227
PPSSLG *LGGQ+LVAV V
Sbjct: 87 PPSSLGSA*LGGQRLVAVMV 28
>gb|BQ663324.1|BQ663324 HU02C09u HU Hordeum vulgare subsp. vulgare cDNA clone HU02C09
3-PRIME, mRNA sequence
Length = 492
Score = 117 bits (250), Expect(2) = 9e-051
Identities = 41/54 (75%), Positives = 47/54 (87%)
Frame = +3 / +1
Query: 201 GRWCLPGTITVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLRIAQYRAG 362
G C+PG+IT+TATN CPPNY LP+DDGGWCNPPR HFDMAEPA+L+I YRAG
Sbjct: 331 GSSCVPGSITITATNLCPPNYALPNDDGGWCNPPRAHFDMAEPAYLQIGIYRAG 492
Score = 103 bits (220), Expect(2) = 9e-051
Identities = 39/42 (92%), Positives = 41/42 (97%)
Frame = +3 / +1
Query: 66 TTGGACGYGNLYSTGYGTSTAALSTALFNDGAACGSCYELRC 191
T GGACGYGNLYSTGYGT+TAALSTALFNDGAACGSCYEL+C
Sbjct: 202 TMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELKC 327
>gb|BF257120.2|BF257120 HVSMEf0011O18f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0011O18f, mRNA sequence
Length = 539
Score = 115 bits (245), Expect(2) = 4e-050
Identities = 41/57 (71%), Positives = 48/57 (84%)
Frame = +3 / +1
Query: 201 GRWCLPGTITVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLRIAQYRAGIVP 371
G C+PG+IT+TATN CP NY L +DDGGWCNPPR HFDMA+PA+L+I YRAGIVP
Sbjct: 334 GSSCVPGSITITATNLCPANYALANDDGGWCNPPRAHFDMAKPAYLQIGIYRAGIVP 504
Score = 103 bits (220), Expect(2) = 4e-050
Identities = 39/42 (92%), Positives = 41/42 (97%)
Frame = +3 / +1
Query: 66 TTGGACGYGNLYSTGYGTSTAALSTALFNDGAACGSCYELRC 191
T GGACGYGNLYSTGYGT+TAALSTALFNDGAACGSCYEL+C
Sbjct: 205 TMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELKC 330
>gb|CK124288.1|CK124288 BES1824108e08 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010E088 5-PRIME, mRNA sequence
Length = 542
Score = 155 bits (334), Expect(2) = 4e-049
Identities = 56/82 (68%), Positives = 70/82 (85%)
Frame = +3 / +2
Query: 273 SDDGGWCNPPRPHFDMAEPAFLRIAQYRAGIVPVAFRRVPCVKKGGIRFTINGHSYFNLV 452
SD GGWCNPPRPHFDMA+PA+ +I YR GI+P+ ++RVPCVKKGG+RFTI+GH YF LV
Sbjct: 2 SDKGGWCNPPRPHFDMAQPAWEKIGVYRGGIIPIIYQRVPCVKKGGVRFTISGHDYFQLV 181
Query: 453 LVTNVAGAGDVRSVSIRGSRTG 518
L TNVA AG VR++ +RGS++G
Sbjct: 182 LPTNVAAAGSVRAMDVRGSKSG 247
Score = 100 bits (214), Expect = 1e-020
Identities = 49/82 (59%), Positives = 51/82 (62%)
Frame = -2 / -3
Query: 517 PVREPRMETERTSPAPATLVTSTRLK*ECPLMVNRMPPFFTHGTLLNATGTMPARYCAMR 338
P EP T PA ATLV ST K* PLMVN PPFFTHGTL G MP R +
Sbjct: 246 PDLEPLTSMALTEPAAATLVGSTSWK*SWPLMVNLTPPFFTHGTLW*MMGMMPPR*TPIF 67
Query: 337 RKAGSAMSKCGRGGLHQPPSSL 272
+AG AMSK GRGGLHQPP SL
Sbjct: 66 SQAGCAMSKWGRGGLHQPPLSL 1
Score = 59.7 bits (124), Expect(2) = 4e-049
Identities = 21/42 (50%), Positives = 29/42 (69%)
Frame = +3 / +2
Query: 519 WQPMSRNWGQNWQSNSYLDRQALSFQVTASDGRTVTSNGAVP 644
W M+ NWG NW S +YL+ Q LSF+VT +DG+T+ + VP
Sbjct: 251 WMAMAHNWGANWHSLAYLNGQGLSFRVTITDGQTLVFSDVVP 376
>gb|AV916436.1|AV916436 AV916436 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17d09 5', mRNA sequence
Length = 536
Score = 189 bits (407), Expect = 2e-047
Identities = 75/88 (85%), Positives = 81/88 (92%)
Frame = +3 / +2
Query: 384 RVPCVKKGGIRFTINGHSYFNLVLVTNVAGAGDVRSVSIRGSRTGWQPMSRNWGQNWQSN 563
RVPCVKKGGIRFTINGHSYFNLVLVTNVAGAGD RSVSI+G+RTGWQ MSRNWG NWQSN
Sbjct: 257 RVPCVKKGGIRFTINGHSYFNLVLVTNVAGAGDARSVSIKGTRTGWQAMSRNWGMNWQSN 436
Query: 564 SYLDRQALSFQVTASDGRTVTSNGAVPA 647
++LD Q LSF+VT+SDGRTVTSN A PA
Sbjct: 437 TFLDGQCLSFRVTSSDGRTVTSNAAAPA 520
Score = 171 bits (369), Expect = 4e-042
Identities = 75/99 (75%), Positives = 77/99 (77%)
Frame = -2 / -3
Query: 661 PNCQPAGTAPLLVTVRPSLAVTWNESACLSRYELLCQFWPQFRDMGCHPVREPRMETERT 482
PNCQPAG A LLVTVRPSL VT E SR LLCQF PQ RDM C PVR P M+TER
Sbjct: 534 PNCQPAGAAALLVTVRPSLEVTLKERHWPSRKVLLCQFMPQLRDMACQPVRVPLMDTERA 355
Query: 481 SPAPATLVTSTRLK*ECPLMVNRMPPFFTHGTLLNATGT 365
SPAPATLVTSTRLK*E PLMVNRMPPFFTHGTLL+ T
Sbjct: 354 SPAPATLVTSTRLK*EWPLMVNRMPPFFTHGTLLDQFNT 238
>gb|AV922591.1|AV922591 AV922591 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags18m24 3', mRNA sequence
Length = 701
Score = 177 bits (381), Expect = 9e-044
Identities = 75/96 (78%), Positives = 76/96 (79%)
Frame = -2 / +2
Query: 685 NWPPSKVWPNCQPAGTAPLLVTVRPSLAVTWNESACLSRYELLCQFWPQFRDMGCHPVRE 506
NW PSKVWPNCQPAG A LLVTVRPSL VT E SR LLCQF PQ RDM C PVR
Sbjct: 413 NWAPSKVWPNCQPAGAAALLVTVRPSLEVTLKERHWPSRKVLLCQFMPQLRDMACQPVRV 592
Query: 505 PRMETERTSPAPATLVTSTRLK*ECPLMVNRMPPFF 398
P M+TER SPAPATLVTSTRLK*E PLMVNRMPPFF
Sbjct: 593 PLMDTERASPAPATLVTSTRLK*EWPLMVNRMPPFF 700
Score = 176 bits (378), Expect(2) = 4e-047
Identities = 70/83 (84%), Positives = 76/83 (91%)
Frame = +3 / -3
Query: 399 KKGGIRFTINGHSYFNLVLVTNVAGAGDVRSVSIRGSRTGWQPMSRNWGQNWQSNSYLDR 578
KKGGIRFTINGHSYFNLVLVTNVAGAGD RSVSI+G+RTGWQ MSRNWG NWQSN++LD
Sbjct: 699 KKGGIRFTINGHSYFNLVLVTNVAGAGDARSVSIKGTRTGWQAMSRNWGMNWQSNTFLDG 520
Query: 579 QALSFQVTASDGRTVTSNGAVPA 647
Q LSF+VT+SDGRTVTSN A PA
Sbjct: 519 QCLSFRVTSSDGRTVTSNAAAPA 451
Score = 32.7 bits (65), Expect(2) = 4e-047
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +2 / -2
Query: 650 LAVRPDLRGRPVL 688
LAVRPDLRGRPVL
Sbjct: 448 LAVRPDLRGRPVL 410
>gb|BI779583.2|BI779583 EBro01_SQ004_H20_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ004_H20 5', mRNA sequence
Length = 592
Score = 120 bits (257), Expect(2) = 6e-047
Identities = 45/68 (66%), Positives = 55/68 (80%)
Frame = +3 / +1
Query: 225 ITVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLRIAQYRAGIVPVAFRRVPCVKK 404
ITV+ATNFCPPN+ LP GGWCNPPR HFDM++PA+ IA Y+AGIVPV ++RV C K+
Sbjct: 367 ITVSATNFCPPNWALPRTTGGWCNPPRLHFDMSQPAWTSIAIYQAGIVPVMYKRVSCQKR 546
Query: 405 GGIRFTIN 428
GIRF I+
Sbjct: 547 DGIRFGIS 570
Score = 87.7 bits (185), Expect(2) = 6e-047
Identities = 32/43 (74%), Positives = 36/43 (83%)
Frame = +3 / +1
Query: 66 TTGGACGYGNLYSTGYGTSTAALSTALFNDGAACGSCYELRCD 194
T GGACGYGNLY +GYG + AALSTALFNDGA CG+CY + CD
Sbjct: 202 TMGGACGYGNLYGSGYGINNAALSTALFNDGAMCGACYIIYCD 330
>gb|BQ762357.1|BQ762357 EBro01_SQ005_H18_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ005_H18 5', mRNA sequence
Length = 535
Score = 183 bits (395), Expect = 1e-045
Identities = 74/88 (84%), Positives = 81/88 (92%)
Frame = +3 / +1
Query: 384 RVPCVKKGGIRFTINGHSYFNLVLVTNVAGAGDVRSVSIRGSRTGWQPMSRNWGQNWQSN 563
RVPCVKKGG+RFTINGHSYFNLVLVTNVAGAGDV+SVSI+GS +GWQ MSRNWGQNWQSN
Sbjct: 13 RVPCVKKGGMRFTINGHSYFNLVLVTNVAGAGDVQSVSIKGSSSGWQAMSRNWGQNWQSN 192
Query: 564 SYLDRQALSFQVTASDGRTVTSNGAVPA 647
+ LD Q+LSF+VT SDGRTVTSN A PA
Sbjct: 193 ADLDGQSLSFRVTLSDGRTVTSNNAAPA 276
Score = 174 bits (374), Expect = 8e-043
Identities = 75/101 (74%), Positives = 78/101 (77%)
Frame = -2 / -3
Query: 685 NWPPSKVWPNCQPAGTAPLLVTVRPSLAVTWNESACLSRYELLCQFWPQFRDMGCHPVRE 506
NWPPSKV P QPAG A LLVTVRPSL VT E SR LLCQFWPQ RDM CHP +
Sbjct: 314 NWPPSKVCPKDQPAGAALLLVTVRPSLRVTRKERLWPSRSALLCQFWPQLRDMACHPELD 135
Query: 505 PRMETERTSPAPATLVTSTRLK*ECPLMVNRMPPFFTHGTL 383
P MET+ TSPAPATLVTSTRLK*E PLMVN +PPFFT GTL
Sbjct: 134 PLMETDCTSPAPATLVTSTRLK*EWPLMVNLIPPFFTQGTL 12
>gb|CA009609.1|CA009609 HU14J18r HU Hordeum vulgare subsp. vulgare cDNA clone HU14J18
5-PRIME, mRNA sequence
Length = 465
Score = 103 bits (220), Expect(2) = 2e-044
Identities = 39/42 (92%), Positives = 41/42 (97%)
Frame = +3 / +3
Query: 66 TTGGACGYGNLYSTGYGTSTAALSTALFNDGAACGSCYELRC 191
T GGACGYGNLYSTGYGT+TAALSTALFNDGAACGSCYEL+C
Sbjct: 213 TMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELKC 338
Score = 95.9 bits (203), Expect(2) = 2e-044
Identities = 32/41 (78%), Positives = 36/41 (87%)
Frame = +3 / +3
Query: 201 GRWCLPGTITVTATNFCPPNYGLPSDDGGWCNPPRPHFDMA 323
G C+PG+IT+TATN CPPNY LP+DDGGWCNPPR HFDMA
Sbjct: 342 GSSCVPGSITITATNLCPPNYALPNDDGGWCNPPRAHFDMA 464
>gb|AV913816.1|AV913816 AV913816 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23g08 5', mRNA sequence
Length = 657
Score = 113 bits (242), Expect(3) = 1e-043
Identities = 46/61 (75%), Positives = 53/61 (86%)
Frame = +3 / +2
Query: 333 FLRIAQYRAGIVPVAFRRVPCVKKGGIRFTINGHSYFNLVLVTNVAGAGDVRSVSIRGSR 512
F RIA YRAGIVPV++RRV C KKGGIRFTINGHSYFNLVLVTNV G GDV +VS++ +R
Sbjct: 2 FQRIALYRAGIVPVSYRRVACQKKGGIRFTINGHSYFNLVLVTNVGGPGDVHAVSVKSTR 181
Query: 513 T 515
+
Sbjct: 182 S 184
Score = 80.8 bits (170), Expect(2) = 6e-032
Identities = 37/53 (69%), Positives = 39/53 (73%)
Frame = -2 / -1
Query: 496 ETERTSPAPATLVTSTRLK*ECPLMVNRMPPFFTHGTLLNATGTMPARYCAMR 338
+T TSP P TLVTSTRLK E PL+VN MPPFF H TL TGTMPAR AMR
Sbjct: 165 DTACTSPGPPTLVTSTRLKYEWPLIVNLMPPFFWHATLR*ETGTMPAR*SAMR 7
Score = 78.5 bits (165), Expect(3) = 1e-043
Identities = 29/42 (69%), Positives = 35/42 (83%)
Frame = +3 / +2
Query: 519 WQPMSRNWGQNWQSNSYLDRQALSFQVTASDGRTVTSNGAVP 644
WQ +SRNWGQNWQSN+ LD Q LSF+VTA +G++V SN AVP
Sbjct: 191 WQALSRNWGQNWQSNALLDGQGLSFRVTAGNGQSVVSNNAVP 316
Score = 77.1 bits (162), Expect(2) = 6e-032
Identities = 33/56 (58%), Positives = 34/56 (60%)
Frame = -2 / -1
Query: 685 NWPPSKVWPNCQPAGTAPLLVTVRPSLAVTWNESACLSRYELLCQFWPQFRDMGCH 518
NW P KVWPN QP GTA L T P AVT NE C S LLCQF PQ R+ CH
Sbjct: 357 NWAPLKVWPNDQPRGTALLETTDWPLPAVTRNERPCPSSSALLCQFCPQLRESACH 190
Score = 23.1 bits (44), Expect(3) = 1e-043
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = +2 / +1
Query: 650 LAVRPDLRGRPV 685
L +RPDL+ RPV
Sbjct: 322 LVIRPDLQRRPV 357
>gb|BJ464959.1|BJ464959 BJ464959 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags36l22 5', mRNA sequence
Length = 639
Score = 113 bits (242), Expect(3) = 1e-043
Identities = 46/61 (75%), Positives = 53/61 (86%)
Frame = +3 / +2
Query: 333 FLRIAQYRAGIVPVAFRRVPCVKKGGIRFTINGHSYFNLVLVTNVAGAGDVRSVSIRGSR 512
F RIA YRAGIVPV++RRV C KKGGIRFTINGHSYFNLVLVTNV G GDV +VS++ +R
Sbjct: 2 FQRIALYRAGIVPVSYRRVACQKKGGIRFTINGHSYFNLVLVTNVGGPGDVHAVSVKSTR 181
Query: 513 T 515
+
Sbjct: 182 S 184
Score = 80.8 bits (170), Expect(2) = 6e-032
Identities = 37/53 (69%), Positives = 39/53 (73%)
Frame = -2 / -1
Query: 496 ETERTSPAPATLVTSTRLK*ECPLMVNRMPPFFTHGTLLNATGTMPARYCAMR 338
+T TSP P TLVTSTRLK E PL+VN MPPFF H TL TGTMPAR AMR
Sbjct: 165 DTACTSPGPPTLVTSTRLKYEWPLIVNLMPPFFWHATLR*ETGTMPAR*SAMR 7
Score = 78.5 bits (165), Expect(3) = 1e-043
Identities = 29/42 (69%), Positives = 35/42 (83%)
Frame = +3 / +2
Query: 519 WQPMSRNWGQNWQSNSYLDRQALSFQVTASDGRTVTSNGAVP 644
WQ +SRNWGQNWQSN+ LD Q LSF+VTA +G++V SN AVP
Sbjct: 191 WQALSRNWGQNWQSNALLDGQGLSFRVTAGNGQSVVSNNAVP 316
Score = 77.1 bits (162), Expect(2) = 6e-032
Identities = 33/56 (58%), Positives = 34/56 (60%)
Frame = -2 / -1
Query: 685 NWPPSKVWPNCQPAGTAPLLVTVRPSLAVTWNESACLSRYELLCQFWPQFRDMGCH 518
NW P KVWPN QP GTA L T P AVT NE C S LLCQF PQ R+ CH
Sbjct: 357 NWAPLKVWPNDQPRGTALLETTDWPLPAVTRNERPCPSSSALLCQFCPQLRESACH 190
Score = 23.1 bits (44), Expect(3) = 1e-043
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = +2 / +1
Query: 650 LAVRPDLRGRPV 685
L +RPDL+ RPV
Sbjct: 322 LVIRPDLQRRPV 357
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 341,918,780
Number of Sequences: 312970
Number of extensions: 5167481
Number of successful extensions: 70966
Number of sequences better than 1.0e-020: 91
length of database: 58,378,179
effective HSP length: 52
effective length of database: 42,103,739
effective search space used: 12125876832
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)