TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3671909.2.1
(767 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BJ546669.1|BJ546669 BJ546669 K. Sato unpublished cDNA li... 109 1e-039
gb|CA013705.1|CA013705 HT09E03r HT Hordeum vulgare subsp. v... 92 9e-036
gb|CA012725.1|CA012725 HT06E05r HT Hordeum vulgare subsp. v... 94 2e-035
gb|AV917596.1|AV917596 AV917596 K. Sato unpublished cDNA li... 111 3e-033
gb|BE195199.3|BE195199 HVSMEh0088J02f Hordeum vulgare 5-45 ... 86 6e-033
gb|BM816874.1|BM816874 HB105E09_SK.ab1 HB Hordeum vulgare s... 104 1e-032
gb|BE421487.1|BE421487 HWM009.G12 ITEC HWM Barley Leaf Libr... 136 1e-031
gb|AV936726.1|AV936726 AV936726 K. Sato unpublished cDNA li... 107 1e-030
gb|AV936516.1|AV936516 AV936516 K. Sato unpublished cDNA li... 107 1e-030
gb|BJ548975.1|BJ548975 BJ548975 K. Sato unpublished cDNA li... 107 1e-030
gb|BJ546119.1|BJ546119 BJ546119 K. Sato unpublished cDNA li... 107 1e-030
gb|BJ548006.1|BJ548006 BJ548006 K. Sato unpublished cDNA li... 107 1e-030
gb|AV936356.1|AV936356 AV936356 K. Sato unpublished cDNA li... 107 1e-030
gb|BJ547960.1|BJ547960 BJ547960 K. Sato unpublished cDNA li... 107 1e-030
gb|BJ548998.1|BJ548998 BJ548998 K. Sato unpublished cDNA li... 107 1e-030
gb|AV936349.1|AV936349 AV936349 K. Sato unpublished cDNA li... 107 1e-030
gb|BJ548386.1|BJ548386 BJ548386 K. Sato unpublished cDNA li... 107 1e-030
gb|AV930421.1|AV930421 AV930421 K. Sato unpublished cDNA li... 107 1e-030
gb|AV935198.1|AV935198 AV935198 K. Sato unpublished cDNA li... 107 1e-030
gb|BJ546501.1|BJ546501 BJ546501 K. Sato unpublished cDNA li... 107 1e-030
gb|BJ549009.1|BJ549009 BJ549009 K. Sato unpublished cDNA li... 107 1e-030
gb|CA009631.1|CA009631 HU14K18r HU Hordeum vulgare subsp. v... 107 6e-028
gb|CA006248.1|CA006248 HU14K18u HU Hordeum vulgare subsp. v... 107 6e-028
emb|AJ495774.1|HVU495774 Hordeum vulgare partial mRNA for p... 85 1e-027
gb|AY989887.1| Hordeum vulgare subsp. vulgare cytochrome P4... 85 1e-027
gb|BF627303.3|BF627303 HVSMEb0004I01f Hordeum vulgare seedl... 83 1e-027
gb|BJ466813.1|BJ466813 BJ466813 K. Sato unpublished cDNA li... 83 1e-027
gb|AV922397.1|AV922397 AV922397 K. Sato unpublished cDNA li... 83 1e-027
gb|BJ466913.1|BJ466913 BJ466913 K. Sato unpublished cDNA li... 83 1e-027
gb|AV919454.1|AV919454 AV919454 K. Sato unpublished cDNA li... 83 1e-027
gb|AV919240.1|AV919240 AV919240 K. Sato unpublished cDNA li... 83 1e-027
gb|AV922497.1|AV922497 AV922497 K. Sato unpublished cDNA li... 83 1e-027
gb|AV919113.1|AV919113 AV919113 K. Sato unpublished cDNA li... 83 1e-027
gb|AV917809.1|AV917809 AV917809 K. Sato unpublished cDNA li... 83 1e-027
gb|AV917230.1|AV917230 AV917230 K. Sato unpublished cDNA li... 83 1e-027
gb|BQ471267.1|BQ471267 HV01P03T HV Hordeum vulgare subsp. v... 83 1e-027
gb|AV917240.1|AV917240 AV917240 K. Sato unpublished cDNA li... 83 1e-027
gb|BJ464883.1|BJ464883 BJ464883 K. Sato unpublished cDNA li... 83 1e-027
gb|AV917724.1|AV917724 AV917724 K. Sato unpublished cDNA li... 83 1e-027
gb|AV922407.1|AV922407 AV922407 K. Sato unpublished cDNA li... 83 1e-027
gb|BJ475646.1|BJ475646 BJ475646 K. Sato unpublished cDNA li... 80 7e-027
gb|BE214174.2|BE214174 HV_CEb0002I14f Hordeum vulgare seedl... 83 9e-027
gb|BJ466231.1|BJ466231 BJ466231 K. Sato unpublished cDNA li... 83 9e-027
gb|AJ434580.1|AJ434580 AJ434580 S00002 Hordeum vulgare subs... 84 9e-027
gb|BQ664118.1|BQ664118 HV01P03w HV Hordeum vulgare subsp. v... 83 3e-026
gb|AU252315.1|AU252315 AU252315 salt-stressed barley root c... 92 1e-025
gb|BF259778.3|BF259778 HVSMEf0020D20f Hordeum vulgare seedl... 75 1e-024
gb|AV918924.1|AV918924 AV918924 K. Sato unpublished cDNA li... 83 4e-024
gb|CB880227.1|CB880227 HM05O04w HM Hordeum vulgare subsp. v... 72 7e-024
gb|BM101180.2|BM101180 EBpi01_SQ003_C01_R pistil, 1 DPA, no... 83 9e-024
gb|BJ465805.1|BJ465805 BJ465805 K. Sato unpublished cDNA li... 83 9e-024
gb|BJ452936.1|BJ452936 BJ452936 K. Sato unpublished cDNA li... 87 1e-023
gb|BJ545191.1|BJ545191 BJ545191 K. Sato unpublished cDNA li... 74 2e-023
gb|AV928038.1|AV928038 AV928038 K. Sato unpublished cDNA li... 72 6e-023
gb|BF629412.3|BF629412 HVSMEb0012D18f Hordeum vulgare seedl... 65 3e-022
gb|BJ461185.1|BJ461185 BJ461185 K. Sato unpublished cDNA li... 87 7e-022
gb|AV928880.1|AV928880 AV928880 K. Sato unpublished cDNA li... 103 1e-021
gb|CA011333.1|CA011333 HT06E05u HT Hordeum vulgare subsp. v... 94 3e-021
gb|BI960513.1|BI960513 HVSMEn0024N22f Hordeum vulgare rachi... 72 4e-021
gb|AV931728.1|AV931728 AV931728 K. Sato unpublished cDNA li... 72 4e-021
>gb|BJ546669.1|BJ546669 BJ546669 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak45m01 3', mRNA sequence
Length = 730
Score = 109 bits (233), Expect(2) = 1e-039
Identities = 42/69 (60%), Positives = 50/69 (72%)
Frame = -1 / -2
Query: 584 VEFKGADFELLPFGAGRRMCPGMAFGLANVELALASLLFHFDWEAPGVSDPAEFDMAEAF 405
V+FKG +FE +PFGAGRRMCPGM F A++E+ LASLL+HFDWE P P DM E
Sbjct: 423 VDFKGTNFEYIPFGAGRRMCPGMTFAQASMEIVLASLLYHFDWELPSGVKPDGLDMTEEM 244
Query: 404 GITARRKAD 378
G+T RRK D
Sbjct: 243 GLTVRRKND 217
Score = 73.9 bits (155), Expect(2) = 1e-039
Identities = 26/41 (63%), Positives = 34/41 (82%)
Frame = -1 / -2
Query: 761 ASTLLLPRQSQEPRRVLGYDVPAGTTVLVNVWALGRDGRYW 639
A+ LLLPR++ E ++LGYD+P GTTVLVN WA+GRD +YW
Sbjct: 591 AAPLLLPREAMEACKILGYDIPEGTTVLVNAWAIGRDPKYW 469
>gb|CA013705.1|CA013705 HT09E03r HT Hordeum vulgare subsp. vulgare cDNA clone HT09E03
5-PRIME, mRNA sequence
Length = 609
Score = 92.3 bits (195), Expect(3) = 9e-036
Identities = 36/46 (78%), Positives = 39/46 (84%)
Frame = -1 / +2
Query: 590 SAVEFKGADFELLPFGAGRRMCPGMAFGLANVELALASLLFHFDWE 453
+AV+ DF LPFGAGRRMCPGMAFG+ANVEL LASLLFHFDWE
Sbjct: 404 AAVDLGAVDFVFLPFGAGRRMCPGMAFGVANVELPLASLLFHFDWE 541
Score = 71.2 bits (149), Expect(3) = 2e-023
Identities = 30/51 (58%), Positives = 38/51 (74%)
Frame = +3 / -3
Query: 435 VRHAGRLPVEVEQKAGERELDVGEPERHARTHPPAGAERQELEVGALELHR 587
+R A LP++VE++A EREL VG+ ERH R HP AGAERQE EV ++HR
Sbjct: 559 LRRACPLPIKVEEQARERELYVGDAERHPRAHPAAGAERQEHEVDGPQVHR 407
Score = 64.8 bits (135), Expect(3) = 9e-036
Identities = 26/37 (70%), Positives = 29/37 (78%)
Frame = -1 / +2
Query: 749 LLPRQSQEPRRVLGYDVPAGTTVLVNVWALGRDGRYW 639
LL R+ Q+ +VLGYDVP GT VLVN WALGRD RYW
Sbjct: 248 LLFRECQKSCQVLGYDVPRGTQVLVNAWALGRDERYW 358
Score = 46.9 bits (96), Expect(3) = 2e-023
Identities = 21/35 (60%), Positives = 22/35 (62%)
Frame = +1 / -1
Query: 652 SRPSAQTFTSTVVPAGTS*PSTRRGSWDCRGSSSV 756
SRPSAQ TST VP GTS PST W R SS +
Sbjct: 345 SRPSAQALTSTCVPRGTSYPSTWHDFWHSRNSSGM 241
Score = 31.3 bits (62), Expect(3) = 9e-036
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = -1 / +2
Query: 431 AEFDMAEAFGITARRK 384
A+ DM EAFG+TARRK
Sbjct: 554 AKVDMTEAFGLTARRK 601
Score = 28.1 bits (55), Expect(3) = 2e-023
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +1 / -1
Query: 382 AFRLAVMPNASAMSNSA 432
+FRLAV PNAS MS A
Sbjct: 603 SFRLAVRPNASVMSTFA 553
>gb|CA012725.1|CA012725 HT06E05r HT Hordeum vulgare subsp. vulgare cDNA clone HT06E05
5-PRIME, mRNA sequence
Length = 700
Score = 94.1 bits (199), Expect(3) = 2e-035
Identities = 36/46 (78%), Positives = 38/46 (82%)
Frame = -1 / +1
Query: 581 EFKGADFELLPFGAGRRMCPGMAFGLANVELALASLLFHFDWEAPG 444
+F G D +PFGAGRRMCPGMAFGLA VEL LASLLFHFDWE PG
Sbjct: 280 DFGGGDLAFVPFGAGRRMCPGMAFGLAGVELPLASLLFHFDWELPG 417
Score = 65.2 bits (136), Expect(3) = 2e-035
Identities = 27/38 (71%), Positives = 29/38 (76%)
Frame = -1 / +1
Query: 749 LLPRQSQEPRRVLGYDVPAGTTVLVNVWALGRDGRYWP 636
LL R+ QEP +V GYDVP GT VLVN WAL RD RYWP
Sbjct: 109 LLFRECQEPCQVQGYDVPRGTQVLVNGWALCRDERYWP 222
Score = 27.6 bits (54), Expect(3) = 2e-035
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -1 / +1
Query: 431 AEFDMAEAFGITARR 387
A+ DM E FG+TARR
Sbjct: 427 AKLDMTETFGLTARR 471
>gb|AV917596.1|AV917596 AV917596 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags10j16 3', mRNA sequence
Length = 644
Score = 111 bits (238), Expect(2) = 3e-033
Identities = 43/67 (64%), Positives = 51/67 (76%)
Frame = -1 / -3
Query: 584 VEFKGADFELLPFGAGRRMCPGMAFGLANVELALASLLFHFDWEAPGVSDPAEFDMAEAF 405
V FKG DF+ LPFGAGRRMCPG+ G+ NVEL LA+L++HFDWE P D + DMAE F
Sbjct: 300 VNFKGNDFQFLPFGAGRRMCPGINLGITNVELMLANLIYHFDWELPVGVDRKDIDMAEVF 121
Query: 404 GITARRK 384
G+T RRK
Sbjct: 120 GLTMRRK 100
Score = 50.1 bits (103), Expect(2) = 3e-033
Identities = 19/37 (51%), Positives = 24/37 (64%)
Frame = -1 / -3
Query: 749 LLPRQSQEPRRVLGYDVPAGTTVLVNVWALGRDGRYW 639
L P + ++GY VPAGT +LVNVWA+GRD W
Sbjct: 468 LPPHLAMGDCNIVGYMVPAGTHILVNVWAIGRDSNSW 358
>gb|BE195199.3|BE195199 HVSMEh0088J02f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0088J02f, mRNA sequence
Length = 624
Score = 85.8 bits (181), Expect(3) = 6e-033
Identities = 34/46 (73%), Positives = 37/46 (80%)
Frame = -1 / +2
Query: 590 SAVEFKGADFELLPFGAGRRMCPGMAFGLANVELALASLLFHFDWE 453
+AV+ DF LPFGAGRRMCP MAFG+ANVEL LASLL HFDWE
Sbjct: 329 AAVDLGAVDFVFLPFGAGRRMCPXMAFGVANVELPLASLLXHFDWE 466
Score = 67.5 bits (141), Expect(3) = 5e-022
Identities = 28/51 (54%), Positives = 36/51 (70%)
Frame = +3 / -3
Query: 435 VRHAGRLPVEVEQKAGERELDVGEPERHARTHPPAGAERQELEVGALELHR 587
+R LP++V ++A EREL VG+ ERH R HP AGAERQE EV ++HR
Sbjct: 484 LREHAPLPIKVXEQARERELYVGDAERHXRAHPAAGAERQEHEVDGPQVHR 332
Score = 64.8 bits (135), Expect(3) = 6e-033
Identities = 26/37 (70%), Positives = 29/37 (78%)
Frame = -1 / +2
Query: 749 LLPRQSQEPRRVLGYDVPAGTTVLVNVWALGRDGRYW 639
LL R+ Q+ +VLGYDVP GT VLVN WALGRD RYW
Sbjct: 173 LLFRECQKSCQVLGYDVPRGTQVLVNAWALGRDERYW 283
Score = 46.9 bits (96), Expect(3) = 5e-022
Identities = 21/35 (60%), Positives = 22/35 (62%)
Frame = +1 / -1
Query: 652 SRPSAQTFTSTVVPAGTS*PSTRRGSWDCRGSSSV 756
SRPSAQ TST VP GTS PST W R SS +
Sbjct: 270 SRPSAQALTSTCVPRGTSYPSTWHDFWHSRNSSGM 166
Score = 28.1 bits (55), Expect(3) = 6e-033
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -1 / +2
Query: 431 AEFDMAEAFGITARRK 384
A+ DM EAF +TARRK
Sbjct: 479 AKVDMTEAFXLTARRK 526
Score = 27.2 bits (53), Expect(3) = 5e-022
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +3 / -3
Query: 384 LPSRGDAKRLGHVEL 428
LP RG+A+ LGHV+L
Sbjct: 526 LPPRGEAECLGHVDL 482
>gb|BM816874.1|BM816874 HB105E09_SK.ab1 HB Hordeum vulgare subsp. vulgare cDNA clone
HB105E09_SK.ab1 similar to Steroid
17-alpha-monooxygenase,Unspecific monooxygenase, mRNA
sequence
Length = 884
Score = 104 bits (222), Expect(2) = 1e-032
Identities = 40/69 (57%), Positives = 51/69 (73%)
Frame = -1 / +2
Query: 590 SAVEFKGADFELLPFGAGRRMCPGMAFGLANVELALASLLFHFDWEAPGVSDPAEFDMAE 411
+ V FKG DF+ LPFGAGRRMCPG+ G+A VEL LA+L++HFDWE P + + +M E
Sbjct: 503 AGVNFKGNDFQFLPFGAGRRMCPGINLGIATVELMLANLMYHFDWELPLGVERKDINMTE 682
Query: 410 AFGITARRK 384
FG+T RRK
Sbjct: 683 LFGLTMRRK 709
Score = 55.1 bits (114), Expect(2) = 1e-032
Identities = 21/38 (55%), Positives = 26/38 (68%)
Frame = -1 / +2
Query: 752 LLLPRQSQEPRRVLGYDVPAGTTVLVNVWALGRDGRYW 639
LL+P + + GY VPAGT VL+NVWA+GRD YW
Sbjct: 338 LLVPHLAMIDGNIDGYMVPAGTHVLINVWAIGRDSSYW 451
>gb|BE421487.1|BE421487 HWM009.G12 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM009.G12, mRNA sequence
Length = 931
Score = 136 bits (292), Expect = 1e-031
Identities = 53/69 (76%), Positives = 59/69 (85%)
Frame = -1 / +3
Query: 584 VEFKGADFELLPFGAGRRMCPGMAFGLANVELALASLLFHFDWEAPGVSDPAEFDMAEAF 405
V+F+G DFELLPFGAGRRMCPGMAFGLA VEL LAS+L HFDWEAP + PAEFDM E
Sbjct: 72 VDFRGTDFELLPFGAGRRMCPGMAFGLAGVELPLASMLLHFDWEAPDIPKPAEFDMTEEL 251
Query: 404 GITARRKAD 378
G+TARRKA+
Sbjct: 252 GVTARRKAN 278
>gb|AV936726.1|AV936726 AV936726 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal5k12 3', mRNA sequence
Length = 774
Score = 107 bits (228), Expect(2) = 1e-030
Identities = 42/67 (62%), Positives = 49/67 (73%)
Frame = -1 / -3
Query: 584 VEFKGADFELLPFGAGRRMCPGMAFGLANVELALASLLFHFDWEAPGVSDPAEFDMAEAF 405
+ FKG DF+ LPFGAGRRMCPGM G+ANVEL LA+L+ HFDWE P + DM E F
Sbjct: 343 INFKGNDFQFLPFGAGRRMCPGMNLGIANVELMLANLVCHFDWELPLGVGRKDIDMTEVF 164
Query: 404 GITARRK 384
G+T RRK
Sbjct: 163 GLTVRRK 143
Score = 46.0 bits (94), Expect(2) = 1e-030
Identities = 19/38 (50%), Positives = 23/38 (60%)
Frame = -1 / -3
Query: 752 LLLPRQSQEPRRVLGYDVPAGTTVLVNVWALGRDGRYW 639
LL P + + GY VPAGT V+VN WA+GRD W
Sbjct: 514 LLAPHLAMADCIIDGYIVPAGTRVVVNAWAIGRDPSSW 401
>gb|AV936516.1|AV936516 AV936516 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal11k15 3', mRNA sequence
Length = 707
Score = 107 bits (228), Expect(2) = 1e-030
Identities = 42/67 (62%), Positives = 49/67 (73%)
Frame = -1 / -2
Query: 584 VEFKGADFELLPFGAGRRMCPGMAFGLANVELALASLLFHFDWEAPGVSDPAEFDMAEAF 405
+ FKG DF+ LPFGAGRRMCPGM G+ANVEL LA+L+ HFDWE P + DM E F
Sbjct: 334 INFKGNDFQFLPFGAGRRMCPGMNLGIANVELMLANLVCHFDWELPLGVGRKDIDMTEVF 155
Query: 404 GITARRK 384
G+T RRK
Sbjct: 154 GLTVRRK 134
Score = 46.0 bits (94), Expect(2) = 1e-030
Identities = 19/38 (50%), Positives = 23/38 (60%)
Frame = -1 / -2
Query: 752 LLLPRQSQEPRRVLGYDVPAGTTVLVNVWALGRDGRYW 639
LL P + + GY VPAGT V+VN WA+GRD W
Sbjct: 505 LLAPHLAMADCIIDGYIVPAGTRVVVNAWAIGRDPSSW 392
>gb|BJ548975.1|BJ548975 BJ548975 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal40l11 3', mRNA sequence
Length = 696
Score = 107 bits (228), Expect(2) = 1e-030
Identities = 42/67 (62%), Positives = 49/67 (73%)
Frame = -1 / -1
Query: 584 VEFKGADFELLPFGAGRRMCPGMAFGLANVELALASLLFHFDWEAPGVSDPAEFDMAEAF 405
+ FKG DF+ LPFGAGRRMCPGM G+ANVEL LA+L+ HFDWE P + DM E F
Sbjct: 327 INFKGNDFQFLPFGAGRRMCPGMNLGIANVELMLANLVCHFDWELPLGVGRKDIDMTEVF 148
Query: 404 GITARRK 384
G+T RRK
Sbjct: 147 GLTVRRK 127
Score = 46.0 bits (94), Expect(2) = 1e-030
Identities = 19/38 (50%), Positives = 23/38 (60%)
Frame = -1 / -1
Query: 752 LLLPRQSQEPRRVLGYDVPAGTTVLVNVWALGRDGRYW 639
LL P + + GY VPAGT V+VN WA+GRD W
Sbjct: 498 LLAPHLAMADCIIDGYIVPAGTRVVVNAWAIGRDPSSW 385
>gb|BJ546119.1|BJ546119 BJ546119 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak33l17 3', mRNA sequence
Length = 689
Score = 107 bits (228), Expect(2) = 1e-030
Identities = 42/67 (62%), Positives = 49/67 (73%)
Frame = -1 / -1
Query: 584 VEFKGADFELLPFGAGRRMCPGMAFGLANVELALASLLFHFDWEAPGVSDPAEFDMAEAF 405
+ FKG DF+ LPFGAGRRMCPGM G+ANVEL LA+L+ HFDWE P + DM E F
Sbjct: 257 INFKGNDFQFLPFGAGRRMCPGMNLGIANVELMLANLVCHFDWELPLGVGRKDIDMTEVF 78
Query: 404 GITARRK 384
G+T RRK
Sbjct: 77 GLTVRRK 57
Score = 46.0 bits (94), Expect(2) = 1e-030
Identities = 19/38 (50%), Positives = 23/38 (60%)
Frame = -1 / -1
Query: 752 LLLPRQSQEPRRVLGYDVPAGTTVLVNVWALGRDGRYW 639
LL P + + GY VPAGT V+VN WA+GRD W
Sbjct: 428 LLAPHLAMADCIIDGYIVPAGTRVVVNAWAIGRDPSSW 315
>gb|BJ548006.1|BJ548006 BJ548006 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal15n22 3', mRNA sequence
Length = 684
Score = 107 bits (228), Expect(2) = 1e-030
Identities = 42/67 (62%), Positives = 49/67 (73%)
Frame = -1 / -3
Query: 584 VEFKGADFELLPFGAGRRMCPGMAFGLANVELALASLLFHFDWEAPGVSDPAEFDMAEAF 405
+ FKG DF+ LPFGAGRRMCPGM G+ANVEL LA+L+ HFDWE P + DM E F
Sbjct: 313 INFKGNDFQFLPFGAGRRMCPGMNLGIANVELMLANLVCHFDWELPLGVGRKDIDMTEVF 134
Query: 404 GITARRK 384
G+T RRK
Sbjct: 133 GLTVRRK 113
Score = 46.0 bits (94), Expect(2) = 1e-030
Identities = 19/38 (50%), Positives = 23/38 (60%)
Frame = -1 / -3
Query: 752 LLLPRQSQEPRRVLGYDVPAGTTVLVNVWALGRDGRYW 639
LL P + + GY VPAGT V+VN WA+GRD W
Sbjct: 484 LLAPHLAMADCIIDGYIVPAGTRVVVNAWAIGRDPSSW 371
>gb|AV936356.1|AV936356 AV936356 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal11a15 3', mRNA sequence
Length = 683
Score = 107 bits (228), Expect(2) = 1e-030
Identities = 42/67 (62%), Positives = 49/67 (73%)
Frame = -1 / -2
Query: 584 VEFKGADFELLPFGAGRRMCPGMAFGLANVELALASLLFHFDWEAPGVSDPAEFDMAEAF 405
+ FKG DF+ LPFGAGRRMCPGM G+ANVEL LA+L+ HFDWE P + DM E F
Sbjct: 313 INFKGNDFQFLPFGAGRRMCPGMNLGIANVELMLANLVCHFDWELPLGVGRKDIDMTEVF 134
Query: 404 GITARRK 384
G+T RRK
Sbjct: 133 GLTVRRK 113
Score = 46.0 bits (94), Expect(2) = 1e-030
Identities = 19/38 (50%), Positives = 23/38 (60%)
Frame = -1 / -2
Query: 752 LLLPRQSQEPRRVLGYDVPAGTTVLVNVWALGRDGRYW 639
LL P + + GY VPAGT V+VN WA+GRD W
Sbjct: 484 LLAPHLAMADCIIDGYIVPAGTRVVVNAWAIGRDPSSW 371
>gb|BJ547960.1|BJ547960 BJ547960 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal12i23 3', mRNA sequence
Length = 669
Score = 107 bits (228), Expect(2) = 1e-030
Identities = 42/67 (62%), Positives = 49/67 (73%)
Frame = -1 / -3
Query: 584 VEFKGADFELLPFGAGRRMCPGMAFGLANVELALASLLFHFDWEAPGVSDPAEFDMAEAF 405
+ FKG DF+ LPFGAGRRMCPGM G+ANVEL LA+L+ HFDWE P + DM E F
Sbjct: 340 INFKGNDFQFLPFGAGRRMCPGMNLGIANVELMLANLVCHFDWELPLGVGRKDIDMTEVF 161
Query: 404 GITARRK 384
G+T RRK
Sbjct: 160 GLTVRRK 140
Score = 46.0 bits (94), Expect(2) = 1e-030
Identities = 19/38 (50%), Positives = 23/38 (60%)
Frame = -1 / -3
Query: 752 LLLPRQSQEPRRVLGYDVPAGTTVLVNVWALGRDGRYW 639
LL P + + GY VPAGT V+VN WA+GRD W
Sbjct: 511 LLAPHLAMADCIIDGYIVPAGTRVVVNAWAIGRDPSSW 398
>gb|BJ548998.1|BJ548998 BJ548998 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal16j19 3', mRNA sequence
Length = 669
Score = 107 bits (228), Expect(2) = 1e-030
Identities = 42/67 (62%), Positives = 49/67 (73%)
Frame = -1 / -2
Query: 584 VEFKGADFELLPFGAGRRMCPGMAFGLANVELALASLLFHFDWEAPGVSDPAEFDMAEAF 405
+ FKG DF+ LPFGAGRRMCPGM G+ANVEL LA+L+ HFDWE P + DM E F
Sbjct: 335 INFKGNDFQFLPFGAGRRMCPGMNLGIANVELMLANLVCHFDWELPLGVGRKDIDMTEVF 156
Query: 404 GITARRK 384
G+T RRK
Sbjct: 155 GLTVRRK 135
Score = 46.0 bits (94), Expect(2) = 1e-030
Identities = 19/38 (50%), Positives = 23/38 (60%)
Frame = -1 / -2
Query: 752 LLLPRQSQEPRRVLGYDVPAGTTVLVNVWALGRDGRYW 639
LL P + + GY VPAGT V+VN WA+GRD W
Sbjct: 506 LLAPHLAMADCIIDGYIVPAGTRVVVNAWAIGRDPSSW 393
>gb|AV936349.1|AV936349 AV936349 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal11a04 3', mRNA sequence
Length = 668
Score = 107 bits (228), Expect(2) = 1e-030
Identities = 42/67 (62%), Positives = 49/67 (73%)
Frame = -1 / -1
Query: 584 VEFKGADFELLPFGAGRRMCPGMAFGLANVELALASLLFHFDWEAPGVSDPAEFDMAEAF 405
+ FKG DF+ LPFGAGRRMCPGM G+ANVEL LA+L+ HFDWE P + DM E F
Sbjct: 335 INFKGNDFQFLPFGAGRRMCPGMNLGIANVELMLANLVCHFDWELPLGVGRKDIDMTEVF 156
Query: 404 GITARRK 384
G+T RRK
Sbjct: 155 GLTVRRK 135
Score = 46.0 bits (94), Expect(2) = 1e-030
Identities = 19/38 (50%), Positives = 23/38 (60%)
Frame = -1 / -1
Query: 752 LLLPRQSQEPRRVLGYDVPAGTTVLVNVWALGRDGRYW 639
LL P + + GY VPAGT V+VN WA+GRD W
Sbjct: 506 LLAPHLAMADCIIDGYIVPAGTRVVVNAWAIGRDPSSW 393
>gb|BJ548386.1|BJ548386 BJ548386 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal24a03 3', mRNA sequence
Length = 645
Score = 107 bits (228), Expect(2) = 1e-030
Identities = 42/67 (62%), Positives = 49/67 (73%)
Frame = -1 / -2
Query: 584 VEFKGADFELLPFGAGRRMCPGMAFGLANVELALASLLFHFDWEAPGVSDPAEFDMAEAF 405
+ FKG DF+ LPFGAGRRMCPGM G+ANVEL LA+L+ HFDWE P + DM E F
Sbjct: 314 INFKGNDFQFLPFGAGRRMCPGMNLGIANVELMLANLVCHFDWELPLGVGRKDIDMTEVF 135
Query: 404 GITARRK 384
G+T RRK
Sbjct: 134 GLTVRRK 114
Score = 46.0 bits (94), Expect(2) = 1e-030
Identities = 19/38 (50%), Positives = 23/38 (60%)
Frame = -1 / -2
Query: 752 LLLPRQSQEPRRVLGYDVPAGTTVLVNVWALGRDGRYW 639
LL P + + GY VPAGT V+VN WA+GRD W
Sbjct: 485 LLAPHLAMADCIIDGYIVPAGTRVVVNAWAIGRDPSSW 372
>gb|AV930421.1|AV930421 AV930421 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd22h15 3', mRNA sequence
Length = 640
Score = 107 bits (228), Expect(2) = 1e-030
Identities = 42/67 (62%), Positives = 49/67 (73%)
Frame = -1 / -1
Query: 584 VEFKGADFELLPFGAGRRMCPGMAFGLANVELALASLLFHFDWEAPGVSDPAEFDMAEAF 405
+ FKG DF+ LPFGAGRRMCPGM G+ANVEL LA+L+ HFDWE P + DM E F
Sbjct: 247 INFKGNDFQFLPFGAGRRMCPGMNLGIANVELMLANLVCHFDWELPLGVGRKDIDMTEVF 68
Query: 404 GITARRK 384
G+T RRK
Sbjct: 67 GLTVRRK 47
Score = 46.0 bits (94), Expect(2) = 1e-030
Identities = 19/38 (50%), Positives = 23/38 (60%)
Frame = -1 / -1
Query: 752 LLLPRQSQEPRRVLGYDVPAGTTVLVNVWALGRDGRYW 639
LL P + + GY VPAGT V+VN WA+GRD W
Sbjct: 418 LLAPHLAMADCIIDGYIVPAGTRVVVNAWAIGRDPSSW 305
>gb|AV935198.1|AV935198 AV935198 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal3e02 3', mRNA sequence
Length = 597
Score = 107 bits (228), Expect(2) = 1e-030
Identities = 42/67 (62%), Positives = 49/67 (73%)
Frame = -1 / -3
Query: 584 VEFKGADFELLPFGAGRRMCPGMAFGLANVELALASLLFHFDWEAPGVSDPAEFDMAEAF 405
+ FKG DF+ LPFGAGRRMCPGM G+ANVEL LA+L+ HFDWE P + DM E F
Sbjct: 334 INFKGNDFQFLPFGAGRRMCPGMNLGIANVELMLANLVCHFDWELPLGVGRKDIDMTEVF 155
Query: 404 GITARRK 384
G+T RRK
Sbjct: 154 GLTVRRK 134
Score = 46.0 bits (94), Expect(2) = 1e-030
Identities = 19/38 (50%), Positives = 23/38 (60%)
Frame = -1 / -3
Query: 752 LLLPRQSQEPRRVLGYDVPAGTTVLVNVWALGRDGRYW 639
LL P + + GY VPAGT V+VN WA+GRD W
Sbjct: 505 LLAPHLAMADCIIDGYIVPAGTRVVVNAWAIGRDPSSW 392
>gb|BJ546501.1|BJ546501 BJ546501 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak42e08 3', mRNA sequence
Length = 594
Score = 107 bits (228), Expect(2) = 1e-030
Identities = 42/67 (62%), Positives = 49/67 (73%)
Frame = -1 / -1
Query: 584 VEFKGADFELLPFGAGRRMCPGMAFGLANVELALASLLFHFDWEAPGVSDPAEFDMAEAF 405
+ FKG DF+ LPFGAGRRMCPGM G+ANVEL LA+L+ HFDWE P + DM E F
Sbjct: 261 INFKGNDFQFLPFGAGRRMCPGMNLGIANVELMLANLVCHFDWELPLGVGRKDIDMTEVF 82
Query: 404 GITARRK 384
G+T RRK
Sbjct: 81 GLTVRRK 61
Score = 46.0 bits (94), Expect(2) = 1e-030
Identities = 19/38 (50%), Positives = 23/38 (60%)
Frame = -1 / -1
Query: 752 LLLPRQSQEPRRVLGYDVPAGTTVLVNVWALGRDGRYW 639
LL P + + GY VPAGT V+VN WA+GRD W
Sbjct: 432 LLAPHLAMADCIIDGYIVPAGTRVVVNAWAIGRDPSSW 319
>gb|BJ549009.1|BJ549009 BJ549009 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal38d04 3', mRNA sequence
Length = 552
Score = 107 bits (228), Expect(2) = 1e-030
Identities = 42/67 (62%), Positives = 49/67 (73%)
Frame = -1 / -1
Query: 584 VEFKGADFELLPFGAGRRMCPGMAFGLANVELALASLLFHFDWEAPGVSDPAEFDMAEAF 405
+ FKG DF+ LPFGAGRRMCPGM G+ANVEL LA+L+ HFDWE P + DM E F
Sbjct: 318 INFKGNDFQFLPFGAGRRMCPGMNLGIANVELMLANLVCHFDWELPLGVGRKDIDMTEVF 139
Query: 404 GITARRK 384
G+T RRK
Sbjct: 138 GLTVRRK 118
Score = 45.5 bits (93), Expect(2) = 1e-030
Identities = 19/38 (50%), Positives = 22/38 (57%)
Frame = -1 / -1
Query: 752 LLLPRQSQEPRRVLGYDVPAGTTVLVNVWALGRDGRYW 639
LL P + GY VPAGT V+VN WA+GRD W
Sbjct: 489 LLAPHLXMADCIIDGYIVPAGTRVVVNAWAIGRDPSSW 376
>gb|CA009631.1|CA009631 HU14K18r HU Hordeum vulgare subsp. vulgare cDNA clone HU14K18
5-PRIME, mRNA sequence
Length = 630
Score = 107 bits (229), Expect(2) = 6e-028
Identities = 41/69 (59%), Positives = 51/69 (73%)
Frame = -1 / +1
Query: 590 SAVEFKGADFELLPFGAGRRMCPGMAFGLANVELALASLLFHFDWEAPGVSDPAEFDMAE 411
+ +FKG DF+ LPFGAGRRMCPGM FGLA VE+ LA+L++ FDWE P + DMA+
Sbjct: 277 ATADFKGRDFQFLPFGAGRRMCPGMGFGLATVEVMLANLVYCFDWELPDGMKEEDVDMAD 456
Query: 410 AFGITARRK 384
FG+T RRK
Sbjct: 457 VFGVTMRRK 483
Score = 36.3 bits (73), Expect(2) = 6e-028
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = -1 / +1
Query: 716 VLGYDVPAGTTVLVNVWALGRDGRYW 639
V GY VPA T ++N WAL RD W
Sbjct: 148 VNGYLVPARTRAIINAWALCRDTELW 225
>gb|CA006248.1|CA006248 HU14K18u HU Hordeum vulgare subsp. vulgare cDNA clone HU14K18
3-PRIME, mRNA sequence
Length = 588
Score = 107 bits (229), Expect(2) = 6e-028
Identities = 41/69 (59%), Positives = 51/69 (73%)
Frame = -1 / -3
Query: 590 SAVEFKGADFELLPFGAGRRMCPGMAFGLANVELALASLLFHFDWEAPGVSDPAEFDMAE 411
+ +FKG DF+ LPFGAGRRMCPGM FGLA VE+ LA+L++ FDWE P + DMA+
Sbjct: 457 ATADFKGRDFQFLPFGAGRRMCPGMGFGLATVEVMLANLVYCFDWELPDGMKEEDVDMAD 278
Query: 410 AFGITARRK 384
FG+T RRK
Sbjct: 277 VFGVTMRRK 251
Score = 36.3 bits (73), Expect(2) = 6e-028
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = -1 / -3
Query: 716 VLGYDVPAGTTVLVNVWALGRDGRYW 639
V GY VPA T ++N WAL RD W
Sbjct: 586 VNGYLVPARTRAIINAWALCRDTELW 509
>emb|AJ495774.1|HVU495774 Hordeum vulgare partial mRNA for putative cytochrome P450
Length = 1790
Score = 85.4 bits (180), Expect(2) = 1e-027
Identities = 32/65 (49%), Positives = 39/65 (60%)
Frame = -1 / +2
Query: 575 KGADFELLPFGAGRRMCPGMAFGLANVELALASLLFHFDWEAPGVSDPAEFDMAEAFGIT 396
+G E +PFGAGRR CPG F +EL LA+LL+HFDW PG P DM E FGI
Sbjct: 1382 QGPHMEFVPFGAGRRQCPGALFATTMLELVLANLLYHFDWAIPGGESPEAMDMGEVFGII 1561
Query: 395 ARRKA 381
++
Sbjct: 1562 VHTRS 1576
Score = 57.9 bits (120), Expect(2) = 1e-027
Identities = 22/43 (51%), Positives = 30/43 (69%)
Frame = -1 / +2
Query: 758 STLLLPRQSQEPRRVLGYDVPAGTTVLVNVWALGRDGRYWPGD 630
S L+ R SQE RV+GYD+P GT V++N +A+GRD +W D
Sbjct: 1199 SAPLIHRASQENCRVMGYDIPKGTAVMINAFAVGRDPAHWGAD 1327
>gb|AY989887.1| Hordeum vulgare subsp. vulgare cytochrome P450 monooxygenase
CYP71U4v2 mRNA, complete cds
Length = 1578
Score = 85.4 bits (180), Expect(2) = 1e-027
Identities = 32/65 (49%), Positives = 39/65 (60%)
Frame = -1 / +1
Query: 575 KGADFELLPFGAGRRMCPGMAFGLANVELALASLLFHFDWEAPGVSDPAEFDMAEAFGIT 396
+G E +PFGAGRR CPG F +EL LA+LL+HFDW PG P DM E FGI
Sbjct: 1318 QGPHMEFVPFGAGRRQCPGALFATTMLELVLANLLYHFDWAIPGGESPETMDMGEVFGII 1497
Query: 395 ARRKA 381
++
Sbjct: 1498 VHTRS 1512
Score = 57.9 bits (120), Expect(2) = 1e-027
Identities = 22/43 (51%), Positives = 30/43 (69%)
Frame = -1 / +1
Query: 758 STLLLPRQSQEPRRVLGYDVPAGTTVLVNVWALGRDGRYWPGD 630
S L+ R SQE RV+GYD+P GT V++N +A+GRD +W D
Sbjct: 1135 SAPLIHRASQENCRVMGYDIPKGTAVMINAFAVGRDPAHWGAD 1263
>gb|BF627303.3|BF627303 HVSMEb0004I01f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0004I01f, mRNA sequence
Length = 741
Score = 83.1 bits (175), Expect(2) = 1e-027
Identities = 33/67 (49%), Positives = 45/67 (67%)
Frame = -1 / +2
Query: 584 VEFKGADFELLPFGAGRRMCPGMAFGLANVELALASLLFHFDWEAPGVSDPAEFDMAEAF 405
V+F G +ELLPFGAGRR+CPG+A G+AN E LA+LL+ F+W P + + E
Sbjct: 281 VDFNGGHYELLPFGAGRRICPGLAMGVANTEFILANLLYCFNWALPQGMRSEDVGVEEFG 460
Query: 404 GITARRK 384
G+T R+K
Sbjct: 461 GLTFRKK 481
Score = 59.7 bits (124), Expect(2) = 1e-027
Identities = 20/40 (50%), Positives = 30/40 (75%)
Frame = -1 / +2
Query: 758 STLLLPRQSQEPRRVLGYDVPAGTTVLVNVWALGRDGRYW 639
+T+L+PR++ P R+ GYD+PA T ++VN WA+GRD W
Sbjct: 116 ATMLVPRETMRPIRLGGYDIPANTMLMVNAWAIGRDPASW 235
>gb|BJ466813.1|BJ466813 BJ466813 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags34b17 3', mRNA sequence
Length = 729
Score = 83.1 bits (175), Expect(2) = 1e-027
Identities = 33/67 (49%), Positives = 45/67 (67%)
Frame = -1 / -1
Query: 584 VEFKGADFELLPFGAGRRMCPGMAFGLANVELALASLLFHFDWEAPGVSDPAEFDMAEAF 405
V+F G +ELLPFGAGRR+CPG+A G+AN E LA+LL+ F+W P + + E
Sbjct: 366 VDFNGGHYELLPFGAGRRICPGLAMGVANTEFILANLLYCFNWALPQGMRSEDVGVEEFG 187
Query: 404 GITARRK 384
G+T R+K
Sbjct: 186 GLTFRKK 166
Score = 59.7 bits (124), Expect(2) = 1e-027
Identities = 20/40 (50%), Positives = 30/40 (75%)
Frame = -1 / -1
Query: 758 STLLLPRQSQEPRRVLGYDVPAGTTVLVNVWALGRDGRYW 639
+T+L+PR++ P R+ GYD+PA T ++VN WA+GRD W
Sbjct: 531 ATMLVPRETMRPIRLGGYDIPANTMLMVNAWAIGRDPASW 412
>gb|AV922397.1|AV922397 AV922397 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags18a18 3', mRNA sequence
Length = 718
Score = 83.1 bits (175), Expect(2) = 1e-027
Identities = 33/67 (49%), Positives = 45/67 (67%)
Frame = -1 / -2
Query: 584 VEFKGADFELLPFGAGRRMCPGMAFGLANVELALASLLFHFDWEAPGVSDPAEFDMAEAF 405
V+F G +ELLPFGAGRR+CPG+A G+AN E LA+LL+ F+W P + + E
Sbjct: 414 VDFNGGHYELLPFGAGRRICPGLAMGVANTEFILANLLYCFNWALPQGMRSEDVGVEEFG 235
Query: 404 GITARRK 384
G+T R+K
Sbjct: 234 GLTFRKK 214
Score = 59.7 bits (124), Expect(2) = 1e-027
Identities = 20/40 (50%), Positives = 30/40 (75%)
Frame = -1 / -2
Query: 758 STLLLPRQSQEPRRVLGYDVPAGTTVLVNVWALGRDGRYW 639
+T+L+PR++ P R+ GYD+PA T ++VN WA+GRD W
Sbjct: 579 ATMLVPRETMRPIRLGGYDIPANTMLMVNAWAIGRDPASW 460
>gb|BJ466913.1|BJ466913 BJ466913 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags35a04 3', mRNA sequence
Length = 719
Score = 83.1 bits (175), Expect(2) = 1e-027
Identities = 33/67 (49%), Positives = 45/67 (67%)
Frame = -1 / -2
Query: 584 VEFKGADFELLPFGAGRRMCPGMAFGLANVELALASLLFHFDWEAPGVSDPAEFDMAEAF 405
V+F G +ELLPFGAGRR+CPG+A G+AN E LA+LL+ F+W P + + E
Sbjct: 415 VDFNGGHYELLPFGAGRRICPGLAMGVANTEFILANLLYCFNWALPQGMRSEDVGVEEFG 236
Query: 404 GITARRK 384
G+T R+K
Sbjct: 235 GLTFRKK 215
Score = 59.7 bits (124), Expect(2) = 1e-027
Identities = 20/40 (50%), Positives = 30/40 (75%)
Frame = -1 / -2
Query: 758 STLLLPRQSQEPRRVLGYDVPAGTTVLVNVWALGRDGRYW 639
+T+L+PR++ P R+ GYD+PA T ++VN WA+GRD W
Sbjct: 580 ATMLVPRETMRPIRLGGYDIPANTMLMVNAWAIGRDPASW 461
>gb|AV919454.1|AV919454 AV919454 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags6b21 3', mRNA sequence
Length = 712
Score = 83.1 bits (175), Expect(2) = 1e-027
Identities = 33/67 (49%), Positives = 45/67 (67%)
Frame = -1 / -1
Query: 584 VEFKGADFELLPFGAGRRMCPGMAFGLANVELALASLLFHFDWEAPGVSDPAEFDMAEAF 405
V+F G +ELLPFGAGRR+CPG+A G+AN E LA+LL+ F+W P + + E
Sbjct: 337 VDFNGGHYELLPFGAGRRICPGLAMGVANTEFILANLLYCFNWALPQGMRSEDVGVEEFG 158
Query: 404 GITARRK 384
G+T R+K
Sbjct: 157 GLTFRKK 137
Score = 59.7 bits (124), Expect(2) = 1e-027
Identities = 20/40 (50%), Positives = 30/40 (75%)
Frame = -1 / -1
Query: 758 STLLLPRQSQEPRRVLGYDVPAGTTVLVNVWALGRDGRYW 639
+T+L+PR++ P R+ GYD+PA T ++VN WA+GRD W
Sbjct: 502 ATMLVPRETMRPIRLGGYDIPANTMLMVNAWAIGRDPASW 383
>gb|AV919240.1|AV919240 AV919240 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags5c10 3', mRNA sequence
Length = 669
Score = 83.1 bits (175), Expect(2) = 1e-027
Identities = 33/67 (49%), Positives = 45/67 (67%)
Frame = -1 / -1
Query: 584 VEFKGADFELLPFGAGRRMCPGMAFGLANVELALASLLFHFDWEAPGVSDPAEFDMAEAF 405
V+F G +ELLPFGAGRR+CPG+A G+AN E LA+LL+ F+W P + + E
Sbjct: 414 VDFNGGHYELLPFGAGRRICPGLAMGVANTEFILANLLYCFNWALPQGMRSEDVGVEEFG 235
Query: 404 GITARRK 384
G+T R+K
Sbjct: 234 GLTFRKK 214
Score = 59.7 bits (124), Expect(2) = 1e-027
Identities = 20/40 (50%), Positives = 30/40 (75%)
Frame = -1 / -1
Query: 758 STLLLPRQSQEPRRVLGYDVPAGTTVLVNVWALGRDGRYW 639
+T+L+PR++ P R+ GYD+PA T ++VN WA+GRD W
Sbjct: 579 ATMLVPRETMRPIRLGGYDIPANTMLMVNAWAIGRDPASW 460
>gb|AV922497.1|AV922497 AV922497 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags18g21 3', mRNA sequence
Length = 670
Score = 83.1 bits (175), Expect(2) = 1e-027
Identities = 33/67 (49%), Positives = 45/67 (67%)
Frame = -1 / -1
Query: 584 VEFKGADFELLPFGAGRRMCPGMAFGLANVELALASLLFHFDWEAPGVSDPAEFDMAEAF 405
V+F G +ELLPFGAGRR+CPG+A G+AN E LA+LL+ F+W P + + E
Sbjct: 415 VDFNGGHYELLPFGAGRRICPGLAMGVANTEFILANLLYCFNWALPQGMRSEDVGVEEFG 236
Query: 404 GITARRK 384
G+T R+K
Sbjct: 235 GLTFRKK 215
Score = 59.7 bits (124), Expect(2) = 1e-027
Identities = 20/40 (50%), Positives = 30/40 (75%)
Frame = -1 / -1
Query: 758 STLLLPRQSQEPRRVLGYDVPAGTTVLVNVWALGRDGRYW 639
+T+L+PR++ P R+ GYD+PA T ++VN WA+GRD W
Sbjct: 580 ATMLVPRETMRPIRLGGYDIPANTMLMVNAWAIGRDPASW 461
>gb|AV919113.1|AV919113 AV919113 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags4j07 3', mRNA sequence
Length = 646
Score = 83.1 bits (175), Expect(2) = 1e-027
Identities = 33/67 (49%), Positives = 45/67 (67%)
Frame = -1 / -3
Query: 584 VEFKGADFELLPFGAGRRMCPGMAFGLANVELALASLLFHFDWEAPGVSDPAEFDMAEAF 405
V+F G +ELLPFGAGRR+CPG+A G+AN E LA+LL+ F+W P + + E
Sbjct: 377 VDFNGGHYELLPFGAGRRICPGLAMGVANTEFILANLLYCFNWALPQGMRSEDVGVEEFG 198
Query: 404 GITARRK 384
G+T R+K
Sbjct: 197 GLTFRKK 177
Score = 59.7 bits (124), Expect(2) = 1e-027
Identities = 20/40 (50%), Positives = 30/40 (75%)
Frame = -1 / -3
Query: 758 STLLLPRQSQEPRRVLGYDVPAGTTVLVNVWALGRDGRYW 639
+T+L+PR++ P R+ GYD+PA T ++VN WA+GRD W
Sbjct: 542 ATMLVPRETMRPIRLGGYDIPANTMLMVNAWAIGRDPASW 423
>gb|AV917809.1|AV917809 AV917809 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags11k05 3', mRNA sequence
Length = 630
Score = 83.1 bits (175), Expect(2) = 1e-027
Identities = 33/67 (49%), Positives = 45/67 (67%)
Frame = -1 / -1
Query: 584 VEFKGADFELLPFGAGRRMCPGMAFGLANVELALASLLFHFDWEAPGVSDPAEFDMAEAF 405
V+F G +ELLPFGAGRR+CPG+A G+AN E LA+LL+ F+W P + + E
Sbjct: 378 VDFNGGHYELLPFGAGRRICPGLAMGVANTEFILANLLYCFNWALPQGMRSEDVGVEEFG 199
Query: 404 GITARRK 384
G+T R+K
Sbjct: 198 GLTFRKK 178
Score = 59.7 bits (124), Expect(2) = 1e-027
Identities = 20/40 (50%), Positives = 30/40 (75%)
Frame = -1 / -1
Query: 758 STLLLPRQSQEPRRVLGYDVPAGTTVLVNVWALGRDGRYW 639
+T+L+PR++ P R+ GYD+PA T ++VN WA+GRD W
Sbjct: 543 ATMLVPRETMRPIRLGGYDIPANTMLMVNAWAIGRDPASW 424
>gb|AV917230.1|AV917230 AV917230 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags18a18 5', mRNA sequence
Length = 619
Score = 83.1 bits (175), Expect(2) = 1e-027
Identities = 33/67 (49%), Positives = 45/67 (67%)
Frame = -1 / +3
Query: 584 VEFKGADFELLPFGAGRRMCPGMAFGLANVELALASLLFHFDWEAPGVSDPAEFDMAEAF 405
V+F G +ELLPFGAGRR+CPG+A G+AN E LA+LL+ F+W P + + E
Sbjct: 381 VDFNGGHYELLPFGAGRRICPGLAMGVANTEFILANLLYCFNWALPQGMRSEDVGVEEFG 560
Query: 404 GITARRK 384
G+T R+K
Sbjct: 561 GLTFRKK 581
Score = 59.7 bits (124), Expect(2) = 1e-027
Identities = 20/40 (50%), Positives = 30/40 (75%)
Frame = -1 / +3
Query: 758 STLLLPRQSQEPRRVLGYDVPAGTTVLVNVWALGRDGRYW 639
+T+L+PR++ P R+ GYD+PA T ++VN WA+GRD W
Sbjct: 216 ATMLVPRETMRPIRLGGYDIPANTMLMVNAWAIGRDPASW 335
>gb|BQ471267.1|BQ471267 HV01P03T HV Hordeum vulgare subsp. vulgare cDNA clone HV01P03
5-PRIME, mRNA sequence
Length = 610
Score = 83.1 bits (175), Expect(2) = 1e-027
Identities = 33/67 (49%), Positives = 45/67 (67%)
Frame = -1 / +2
Query: 584 VEFKGADFELLPFGAGRRMCPGMAFGLANVELALASLLFHFDWEAPGVSDPAEFDMAEAF 405
V+F G +ELLPFGAGRR+CPG+A G+AN E LA+LL+ F+W P + + E
Sbjct: 410 VDFNGGHYELLPFGAGRRICPGLAMGVANTEFILANLLYCFNWALPQGMRSEDVGVEEFG 589
Query: 404 GITARRK 384
G+T R+K
Sbjct: 590 GLTFRKK 610
Score = 59.7 bits (124), Expect(2) = 1e-027
Identities = 20/40 (50%), Positives = 30/40 (75%)
Frame = -1 / +2
Query: 758 STLLLPRQSQEPRRVLGYDVPAGTTVLVNVWALGRDGRYW 639
+T+L+PR++ P R+ GYD+PA T ++VN WA+GRD W
Sbjct: 245 ATMLVPRETMRPIRLGGYDIPANTMLMVNAWAIGRDPASW 364
>gb|AV917240.1|AV917240 AV917240 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags18b11 5', mRNA sequence
Length = 586
Score = 83.1 bits (175), Expect(2) = 1e-027
Identities = 33/67 (49%), Positives = 45/67 (67%)
Frame = -1 / +3
Query: 584 VEFKGADFELLPFGAGRRMCPGMAFGLANVELALASLLFHFDWEAPGVSDPAEFDMAEAF 405
V+F G +ELLPFGAGRR+CPG+A G+AN E LA+LL+ F+W P + + E
Sbjct: 183 VDFNGGHYELLPFGAGRRICPGLAMGVANTEFILANLLYCFNWALPQGMRSEDVGVEEFG 362
Query: 404 GITARRK 384
G+T R+K
Sbjct: 363 GLTFRKK 383
Score = 59.7 bits (124), Expect(2) = 1e-027
Identities = 20/40 (50%), Positives = 30/40 (75%)
Frame = -1 / +3
Query: 758 STLLLPRQSQEPRRVLGYDVPAGTTVLVNVWALGRDGRYW 639
+T+L+PR++ P R+ GYD+PA T ++VN WA+GRD W
Sbjct: 18 ATMLVPRETMRPIRLGGYDIPANTMLMVNAWAIGRDPASW 137
>gb|BJ464883.1|BJ464883 BJ464883 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags36h03 5', mRNA sequence
Length = 582
Score = 83.1 bits (175), Expect(2) = 1e-027
Identities = 33/67 (49%), Positives = 45/67 (67%)
Frame = -1 / +3
Query: 584 VEFKGADFELLPFGAGRRMCPGMAFGLANVELALASLLFHFDWEAPGVSDPAEFDMAEAF 405
V+F G +ELLPFGAGRR+CPG+A G+AN E LA+LL+ F+W P + + E
Sbjct: 381 VDFNGGHYELLPFGAGRRICPGLAMGVANTEFILANLLYCFNWALPQGMRSEDVGVEEFG 560
Query: 404 GITARRK 384
G+T R+K
Sbjct: 561 GLTFRKK 581
Score = 59.7 bits (124), Expect(2) = 1e-027
Identities = 20/40 (50%), Positives = 30/40 (75%)
Frame = -1 / +3
Query: 758 STLLLPRQSQEPRRVLGYDVPAGTTVLVNVWALGRDGRYW 639
+T+L+PR++ P R+ GYD+PA T ++VN WA+GRD W
Sbjct: 216 ATMLVPRETMRPIRLGGYDIPANTMLMVNAWAIGRDPASW 335
>gb|AV917724.1|AV917724 AV917724 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags11c24 3', mRNA sequence
Length = 578
Score = 83.1 bits (175), Expect(2) = 1e-027
Identities = 33/67 (49%), Positives = 45/67 (67%)
Frame = -1 / -2
Query: 584 VEFKGADFELLPFGAGRRMCPGMAFGLANVELALASLLFHFDWEAPGVSDPAEFDMAEAF 405
V+F G +ELLPFGAGRR+CPG+A G+AN E LA+LL+ F+W P + + E
Sbjct: 400 VDFNGGHYELLPFGAGRRICPGLAMGVANTEFILANLLYCFNWALPQGMRSEDVGVEEFG 221
Query: 404 GITARRK 384
G+T R+K
Sbjct: 220 GLTFRKK 200
Score = 59.7 bits (124), Expect(2) = 1e-027
Identities = 20/40 (50%), Positives = 30/40 (75%)
Frame = -1 / -2
Query: 758 STLLLPRQSQEPRRVLGYDVPAGTTVLVNVWALGRDGRYW 639
+T+L+PR++ P R+ GYD+PA T ++VN WA+GRD W
Sbjct: 565 ATMLVPRETMRPIRLGGYDIPANTMLMVNAWAIGRDPASW 446
>gb|AV922407.1|AV922407 AV922407 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags18b11 3', mRNA sequence
Length = 560
Score = 83.1 bits (175), Expect(2) = 1e-027
Identities = 33/67 (49%), Positives = 45/67 (67%)
Frame = -1 / -3
Query: 584 VEFKGADFELLPFGAGRRMCPGMAFGLANVELALASLLFHFDWEAPGVSDPAEFDMAEAF 405
V+F G +ELLPFGAGRR+CPG+A G+AN E LA+LL+ F+W P + + E
Sbjct: 378 VDFNGGHYELLPFGAGRRICPGLAMGVANTEFILANLLYCFNWALPQGMRSEDVGVEEFG 199
Query: 404 GITARRK 384
G+T R+K
Sbjct: 198 GLTFRKK 178
Score = 59.7 bits (124), Expect(2) = 1e-027
Identities = 20/40 (50%), Positives = 30/40 (75%)
Frame = -1 / -3
Query: 758 STLLLPRQSQEPRRVLGYDVPAGTTVLVNVWALGRDGRYW 639
+T+L+PR++ P R+ GYD+PA T ++VN WA+GRD W
Sbjct: 543 ATMLVPRETMRPIRLGGYDIPANTMLMVNAWAIGRDPASW 424
>gb|BJ475646.1|BJ475646 BJ475646 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal29b02 3', mRNA sequence
Length = 617
Score = 79.9 bits (168), Expect(2) = 7e-027
Identities = 35/68 (51%), Positives = 40/68 (58%)
Frame = -1 / -2
Query: 590 SAVEFKGADFELLPFGAGRRMCPGMAFGLANVELALASLLFHFDWEAPGVSDPAEFDMAE 411
S V+ KG D ELLPFGAGRRMCP GL V+L LA+LL + W P E M E
Sbjct: 424 SKVDVKGHDLELLPFGAGRRMCPAHGLGLKMVQLVLANLLHGYAWRLPDGMAAEELSMEE 245
Query: 410 AFGITARR 387
FGI+ R
Sbjct: 244 KFGISVSR 221
Score = 60.6 bits (126), Expect(2) = 7e-027
Identities = 22/38 (57%), Positives = 28/38 (73%)
Frame = -1 / -2
Query: 752 LLLPRQSQEPRRVLGYDVPAGTTVLVNVWALGRDGRYW 639
LL+PR S+E + GY++P GT VLVNVWA+GRD W
Sbjct: 580 LLIPRVSREHTSIAGYEIPVGTRVLVNVWAIGRDPTVW 467
>gb|BE214174.2|BE214174 HV_CEb0002I14f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0002I14f, mRNA sequence
Length = 708
Score = 82.6 bits (174), Expect(2) = 9e-027
Identities = 31/65 (47%), Positives = 38/65 (58%)
Frame = -1 / +2
Query: 575 KGADFELLPFGAGRRMCPGMAFGLANVELALASLLFHFDWEAPGVSDPAEFDMAEAFGIT 396
+G E +PFGAGR CPG F +EL LA+LL+HFDW PG P DM E FGI
Sbjct: 179 QGPHMEFVPFGAGRTQCPGALFATTMLELVLANLLYHFDWAIPGGESPETMDMGEVFGII 358
Query: 395 ARRKA 381
++
Sbjct: 359 VHTRS 373
Score = 57.4 bits (119), Expect(2) = 9e-027
Identities = 21/40 (52%), Positives = 29/40 (72%)
Frame = -1 / +2
Query: 749 LLPRQSQEPRRVLGYDVPAGTTVLVNVWALGRDGRYWPGD 630
L+ R SQE RV+GYD+P GT V++N +A+GRD +W D
Sbjct: 5 LIHRASQENCRVMGYDIPKGTAVMINAFAVGRDPAHWGAD 124
>gb|BJ466231.1|BJ466231 BJ466231 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags31e07 3', mRNA sequence
Length = 580
Score = 83.1 bits (175), Expect(2) = 9e-027
Identities = 33/67 (49%), Positives = 45/67 (67%)
Frame = -1 / -2
Query: 584 VEFKGADFELLPFGAGRRMCPGMAFGLANVELALASLLFHFDWEAPGVSDPAEFDMAEAF 405
V+F G +ELLPFGAGRR+CPG+A G+AN E LA+LL+ F+W P + + E
Sbjct: 378 VDFNGGHYELLPFGAGRRICPGLAMGVANTEFILANLLYCFNWALPQGMRSEDVGVEEFG 199
Query: 404 GITARRK 384
G+T R+K
Sbjct: 198 GLTFRKK 178
Score = 57.0 bits (118), Expect(2) = 9e-027
Identities = 19/36 (52%), Positives = 29/36 (80%)
Frame = -1 / -1
Query: 758 STLLLPRQSQEPRRVLGYDVPAGTTVLVNVWALGRD 651
+T+L+PR++ P R+ GYD+PA T ++VN WA+GRD
Sbjct: 544 ATMLVPRETMRPIRLGGYDIPANTMLMVNAWAIGRD 437
>gb|AJ434580.1|AJ434580 AJ434580 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200005G01F1, mRNA sequence
Length = 486
Score = 84.5 bits (178), Expect(2) = 9e-027
Identities = 34/65 (52%), Positives = 41/65 (63%)
Frame = -1 / +3
Query: 590 SAVEFKGADFELLPFGAGRRMCPGMAFGLANVELALASLLFHFDWEAPGVSDPAEFDMAE 411
S ++F+G DFELLPFGAGRR+CPGM V L LASLL F W P + DM +
Sbjct: 210 STIDFRGVDFELLPFGAGRRICPGMTLAARMVHLMLASLLHQFKWSLPVELERDGIDMED 389
Query: 410 AFGIT 396
FG+T
Sbjct: 390 KFGLT 404
Score = 55.6 bits (115), Expect(2) = 9e-027
Identities = 20/38 (52%), Positives = 26/38 (68%)
Frame = -1 / +3
Query: 752 LLLPRQSQEPRRVLGYDVPAGTTVLVNVWALGRDGRYW 639
LLLPRQ + ++ GY +P G+ V VNVWA+GRD W
Sbjct: 57 LLLPRQPEATLKIAGYTIPKGSRVFVNVWAIGRDKDVW 170
>gb|BQ664118.1|BQ664118 HV01P03w HV Hordeum vulgare subsp. vulgare cDNA clone HV01P03
3-PRIME, mRNA sequence
Length = 591
Score = 83.1 bits (175), Expect(2) = 3e-026
Identities = 33/67 (49%), Positives = 45/67 (67%)
Frame = -1 / -2
Query: 584 VEFKGADFELLPFGAGRRMCPGMAFGLANVELALASLLFHFDWEAPGVSDPAEFDMAEAF 405
V+F G +ELLPFGAGRR+CPG+A G+AN E LA+LL+ F+W P + + E
Sbjct: 425 VDFNGGHYELLPFGAGRRICPGLAMGVANTEFILANLLYCFNWALPQGMRSEDVGVEEFG 246
Query: 404 GITARRK 384
G+T R+K
Sbjct: 245 GLTFRKK 225
Score = 55.1 bits (114), Expect(2) = 3e-026
Identities = 19/40 (47%), Positives = 29/40 (72%)
Frame = -1 / -2
Query: 758 STLLLPRQSQEPRRVLGYDVPAGTTVLVNVWALGRDGRYW 639
+T+L+PR++ P R+ GYD+ A T ++VN WA+GRD W
Sbjct: 590 ATMLVPRETMRPIRLGGYDIXANTMLVVNAWAIGRDPASW 471
>gb|AU252315.1|AU252315 AU252315 salt-stressed barley root cDNA Hordeum vulgare subsp.
vulgare cDNA clone BR-C08 similar to cytochrome P450
CYP99A1, mRNA sequence
Length = 540
Score = 91.8 bits (194), Expect(2) = 1e-025
Identities = 35/65 (53%), Positives = 45/65 (69%)
Frame = -1 / +1
Query: 578 FKGADFELLPFGAGRRMCPGMAFGLANVELALASLLFHFDWEAPGVSDPAEFDMAEAFGI 399
+K + FE LPFG GRR CPG FGLA ++L +A LL++FDW P + P E DM + G+
Sbjct: 238 YKASRFEYLPFGTGRRKCPGDTFGLATLDLIVARLLYYFDWSLPAGTRPDELDMETSLGL 417
Query: 398 TARRK 384
TARRK
Sbjct: 418 TARRK 432
Score = 44.6 bits (91), Expect(2) = 1e-025
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = -1 / +1
Query: 752 LLLPRQSQEPRRVLGYDVPAGTTVLVNVWALGRDGRYW 639
LL+P +E V G+++ GT VLVN WA+ R YW
Sbjct: 73 LLVPHLCRETCDVGGFEIKEGTRVLVNAWAMARSPEYW 186
>gb|BF259778.3|BF259778 HVSMEf0020D20f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0020D20f, mRNA sequence
Length = 675
Score = 74.8 bits (157), Expect(2) = 1e-024
Identities = 32/61 (52%), Positives = 36/61 (59%)
Frame = -1 / +1
Query: 584 VEFKGADFELLPFGAGRRMCPGMAFGLANVELALASLLFHFDWEAPGVSDPAEFDMAEAF 405
V+FKG DFELLPFG+GRRMCPG + V L LASLL F W P + M E
Sbjct: 259 VDFKGRDFELLPFGSGRRMCPGTPLAVRIVHLMLASLLHRFQWRLPVDVEKKGLAMTEKL 438
Query: 404 G 402
G
Sbjct: 439 G 441
Score = 58.3 bits (121), Expect(2) = 1e-024
Identities = 21/38 (55%), Positives = 27/38 (71%)
Frame = -1 / +1
Query: 749 LLPRQSQEPRRVLGYDVPAGTTVLVNVWALGRDGRYWP 636
LLP ++ +V GY VP GT +LVNVWA+G DG+ WP
Sbjct: 103 LLPHVAETTTQVQGYTVPKGTRLLVNVWAIGHDGKVWP 216
>gb|AV918924.1|AV918924 AV918924 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags22l15 3', mRNA sequence
Length = 566
Score = 83.1 bits (175), Expect(2) = 4e-024
Identities = 33/67 (49%), Positives = 45/67 (67%)
Frame = -1 / -1
Query: 584 VEFKGADFELLPFGAGRRMCPGMAFGLANVELALASLLFHFDWEAPGVSDPAEFDMAEAF 405
V+F G +ELLPFGAGRR+CPG+A G+AN E LA+LL+ F+W P + + E
Sbjct: 422 VDFNGGHYELLPFGAGRRICPGLAMGVANTEFILANLLYCFNWALPQGMRSEDVGVEEFG 243
Query: 404 GITARRK 384
G+T R+K
Sbjct: 242 GLTFRKK 222
Score = 48.3 bits (99), Expect(2) = 4e-024
Identities = 16/33 (48%), Positives = 23/33 (69%)
Frame = -1 / -1
Query: 737 QSQEPRRVLGYDVPAGTTVLVNVWALGRDGRYW 639
++ P R+ GYD+PA T ++VN WA+GRD W
Sbjct: 566 ETMRPIRLGGYDIPANTMLMVNAWAIGRDPASW 468
>gb|CB880227.1|CB880227 HM05O04w HM Hordeum vulgare subsp. vulgare cDNA clone HM05O04
3-PRIME, mRNA sequence
Length = 604
Score = 72.1 bits (151), Expect(2) = 7e-024
Identities = 26/48 (54%), Positives = 33/48 (68%)
Frame = -1 / -2
Query: 590 SAVEFKGADFELLPFGAGRRMCPGMAFGLANVELALASLLFHFDWEAP 447
S ++FKG FEL PFGAGRR+CP ++ A VE LA+LL+ F W P
Sbjct: 360 SKIDFKGTHFELTPFGAGRRICPALSMSTATVEFTLANLLYRFQWTLP 217
Score = 58.3 bits (121), Expect(2) = 7e-024
Identities = 21/41 (51%), Positives = 28/41 (68%)
Frame = -1 / -2
Query: 752 LLLPRQSQEPRRVLGYDVPAGTTVLVNVWALGRDGRYWPGD 630
+LLPR++ ++ GYDVPA T + VN WA+GRD WP D
Sbjct: 516 MLLPREAMRDIQIGGYDVPAKTRIYVNAWAIGRDPTSWPDD 394
>gb|BM101180.2|BM101180 EBpi01_SQ003_C01_R pistil, 1 DPA, no treatment, cv Optic, EBpi01
Hordeum vulgare subsp. vulgare cDNA clone
EBpi01_SQ003_C01 5', mRNA sequence
Length = 537
Score = 83.1 bits (175), Expect(2) = 9e-024
Identities = 33/67 (49%), Positives = 45/67 (67%)
Frame = -1 / -3
Query: 584 VEFKGADFELLPFGAGRRMCPGMAFGLANVELALASLLFHFDWEAPGVSDPAEFDMAEAF 405
V+F G +ELLPFGAGRR+CPG+A G+AN E LA+LL+ F+W P + + E
Sbjct: 361 VDFNGGHYELLPFGAGRRICPGLAMGVANTEFILANLLYCFNWALPQGMRSEDVGVEEFG 182
Query: 404 GITARRK 384
G+T R+K
Sbjct: 181 GLTFRKK 161
Score = 46.9 bits (96), Expect(2) = 9e-024
Identities = 17/40 (42%), Positives = 26/40 (65%)
Frame = -1 / -3
Query: 758 STLLLPRQSQEPRRVLGYDVPAGTTVLVNVWALGRDGRYW 639
+T+L+PR++ P R+ G +P V+VN WA+GRD W
Sbjct: 526 ATMLVPRETMRPIRLGGTXIPGQHHVVVNAWAIGRDPASW 407
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 320,260,514
Number of Sequences: 312970
Number of extensions: 4694352
Number of successful extensions: 71188
Number of sequences better than 1.0e-020: 94
length of database: 58,378,179
effective HSP length: 51
effective length of database: 42,416,709
effective search space used: 8653008636
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)