TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3665414.2.1
(3330 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BJ465518.1|BJ465518 BJ465518 K. Sato unpublished cDNA li... 492 e-138
gb|BF626879.2|BF626879 HVSMEb0001J09f Hordeum vulgare seedl... 303 e-106
gb|BU988158.1|BU988158 HF16N05r HF Hordeum vulgare subsp. v... 224 4e-095
gb|BU997959.1|BU997959 HI09I16r HI Hordeum vulgare subsp. v... 307 6e-095
gb|BJ468963.1|BJ468963 BJ468963 K. Sato unpublished cDNA li... 223 3e-087
gb|AV926878.1|AV926878 AV926878 K. Sato unpublished cDNA li... 307 7e-087
gb|BE421430.1|BE421430 HWM009.C03 ITEC HWM Barley Leaf Libr... 307 2e-082
gb|BJ472879.1|BJ472879 BJ472879 K. Sato unpublished cDNA li... 264 3e-069
gb|AV832759.1|AV832759 AV832759 K. Sato unpublished cDNA li... 216 3e-068
gb|BJ544669.1|BJ544669 BJ544669 K. Sato unpublished cDNA li... 230 3e-059
gb|CK125346.1|CK125346 BES1824107m01 BES1824 Hordeum vulgar... 230 3e-059
gb|BU987426.1|BU987426 HF14L16r HF Hordeum vulgare subsp. v... 227 3e-058
gb|AV919193.1|AV919193 AV919193 K. Sato unpublished cDNA li... 225 1e-057
gb|AV833557.1|AV833557 AV833557 K. Sato unpublished cDNA li... 218 1e-055
gb|CA030098.1|CA030098 HX06B10r HX Hordeum vulgare subsp. v... 212 1e-053
gb|BJ546140.1|BJ546140 BJ546140 K. Sato unpublished cDNA li... 212 1e-053
gb|BJ546986.1|BJ546986 BJ546986 K. Sato unpublished cDNA li... 197 3e-049
gb|BJ547950.1|BJ547950 BJ547950 K. Sato unpublished cDNA li... 197 3e-049
gb|BJ548315.1|BJ548315 BJ548315 K. Sato unpublished cDNA li... 197 3e-049
gb|BQ465179.1|BQ465179 HU02N24r HU Hordeum vulgare subsp. v... 181 3e-044
gb|BQ470446.1|BQ470446 HX03A05r HX Hordeum vulgare subsp. v... 181 3e-044
gb|BQ470603.1|BQ470603 HX03H14r HX Hordeum vulgare subsp. v... 181 3e-044
gb|CA007256.1|CA007256 HU07F09r HU Hordeum vulgare subsp. v... 181 3e-044
gb|BQ660212.1|BQ660212 HI01I09w HI Hordeum vulgare subsp. v... 177 3e-043
gb|BF630513.2|BF630513 HVSMEb0011A19f Hordeum vulgare seedl... 84 9e-043
gb|AV914147.1|AV914147 AV914147 K. Sato unpublished cDNA li... 172 8e-042
gb|BG365974.2|BG365974 HVSMEi0005I24f Hordeum vulgare 20 DA... 78 8e-042
gb|BJ467740.1|BJ467740 BJ467740 K. Sato unpublished cDNA li... 172 1e-041
gb|BJ546987.1|BJ546987 BJ546987 K. Sato unpublished cDNA li... 172 1e-041
gb|CB882656.1|CB882656 HL02H20w HL Hordeum vulgare subsp. v... 73 2e-040
gb|AV832731.1|AV832731 AV832731 K. Sato unpublished cDNA li... 160 6e-038
gb|BJ547677.1|BJ547677 BJ547677 K. Sato unpublished cDNA li... 160 6e-038
gb|BG367473.2|BG367473 HVSMEi0012G07f Hordeum vulgare 20 DA... 86 9e-038
gb|BQ467802.1|BQ467802 HS04P07r HS Hordeum vulgare subsp. v... 149 6e-035
gb|CA004277.1|CA004277 HS17B22r HS Hordeum vulgare subsp. v... 145 1e-033
gb|CB874708.1|CB874708 HX06B10w HX Hordeum vulgare subsp. v... 144 2e-033
gb|BU995645.1|BU995645 HM10O13r HM Hordeum vulgare subsp. v... 143 7e-033
gb|BU973765.1|BU973765 HB25O11r BC Hordeum vulgare subsp. v... 142 1e-032
gb|BG414214.2|BG414214 HVSMEk0001E01f Hordeum vulgare testa... 137 3e-031
gb|BJ463624.1|BJ463624 BJ463624 K. Sato unpublished cDNA li... 81 7e-031
gb|BF630509.2|BF630509 HVSMEb0011A07f Hordeum vulgare seedl... 88 1e-030
gb|CA020894.1|CA020894 HZ38D19r HZ Hordeum vulgare subsp. v... 81 2e-029
gb|BU983633.1|BU983633 HA30G17r HA Hordeum vulgare subsp. v... 127 3e-028
gb|BJ452578.1|BJ452578 BJ452578 K. Sato unpublished cDNA li... 72 3e-028
gb|BQ763614.1|BQ763614 EBro02_SQ008_N23_R root, 3 week, hyd... 67 9e-028
gb|CA021581.1|CA021581 HZ40I04r HZ Hordeum vulgare subsp. v... 123 6e-027
gb|AV916490.1|AV916490 AV916490 K. Sato unpublished cDNA li... 72 1e-026
gb|CA014505.1|CA014505 HT11I16r HT Hordeum vulgare subsp. v... 74 2e-026
gb|BU967379.1|BU967379 HB04C03r BC Hordeum vulgare subsp. v... 67 4e-026
gb|BF263820.2|BF263820 HV_CEa0007M06f Hordeum vulgare seedl... 55 5e-026
gb|AV834352.1|AV834352 AV834352 K. Sato unpublished cDNA li... 119 1e-025
gb|AV932261.1|AV932261 AV932261 K. Sato unpublished cDNA li... 65 8e-025
gb|BU967648.1|BU967648 HB04P11r BC Hordeum vulgare subsp. v... 61 1e-024
gb|BG368402.1|BG368402 HVSMEi0018G11f Hordeum vulgare 20 DA... 67 2e-024
gb|BQ472656.1|BQ472656 HB01O12r BC Hordeum vulgare subsp. v... 66 3e-024
gb|AJ462419.1|AJ462419 AJ462419 S00002 Hordeum vulgare subs... 81 4e-024
gb|AV924163.1|AV924163 AV924163 K. Sato unpublished cDNA li... 72 4e-024
gb|BG418600.2|BG418600 HVSMEk0023G18f Hordeum vulgare testa... 54 1e-023
gb|AV911206.1|AV911206 AV911206 K. Sato unpublished cDNA li... 85 3e-023
gb|BU987283.1|BU987283 HF14F07r HF Hordeum vulgare subsp. v... 60 7e-023
gb|CK125311.1|CK125311 BES1824107k14 BES1824 Hordeum vulgar... 60 2e-022
gb|BI950083.1|BI950083 HVSMEl0018H14f Hordeum vulgare spike... 68 3e-022
gb|AL503592.1|AL503592 AL503592 Hordeum vulgare Barke roots... 58 4e-022
gb|BF622824.2|BF622824 HVSMEa0009C21f Hordeum vulgare seedl... 106 6e-022
gb|CB881798.1|CB881798 HM10O13w HM Hordeum vulgare subsp. v... 106 6e-022
gb|BU988941.1|BU988941 HF19D14r HF Hordeum vulgare subsp. v... 68 7e-022
gb|AV913067.1|AV913067 AV913067 K. Sato unpublished cDNA li... 72 1e-021
gb|AL505424.1|AL505424 AL505424 Hordeum vulgare Barke roots... 56 2e-021
gb|BG299450.2|BG299450 HVSMEa0020B12f Hordeum vulgare seedl... 103 5e-021
gb|AL507417.1|AL507417 AL507417 Hordeum vulgare Barke devel... 68 7e-021
gb|BU973770.1|BU973770 HB25O16r BC Hordeum vulgare subsp. v... 68 7e-021
gb|BU973712.1|BU973712 HB25M02r BC Hordeum vulgare subsp. v... 68 7e-021
>gb|BJ465518.1|BJ465518 BJ465518 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags29j23 5', mRNA sequence
Length = 669
Score = 492 bits (1068), Expect = e-138
Identities = 201/221 (90%), Positives = 211/221 (95%)
Frame = +1 / +2
Query: 1954 KDGAILVKKTADNIDEAAKELPDANLRPEDLWANHSKPVLPKPHMKDTASWRAIQKVLEN 2133
K+G +L+KKTA+NIDEAAKELPDANLRPEDLWANHSK VLPKPHMKD+ASWRAIQKV E
Sbjct: 5 KEGVMLIKKTAENIDEAAKELPDANLRPEDLWANHSKVVLPKPHMKDSASWRAIQKVREG 184
Query: 2134 GESIDLKHFRPVRPLGSGDTGSVHLVELLGTGEYFAMKAMDKSVMLNRNKVHRATAERQI 2313
GE+IDLKHFRPV+PLGSGDTGSVHLVELL TGEYFAMKAMDK+VMLNRNKVHRATAERQI
Sbjct: 185 GENIDLKHFRPVKPLGSGDTGSVHLVELLKTGEYFAMKAMDKNVMLNRNKVHRATAERQI 364
Query: 2314 LDMLDHPFLPTLYASFQTKTHICLIVDYCAGGELFMLLDRQPMKVLKEDAVRFYAAEVVT 2493
LDMLDHPFLPTLYASFQTKTHICLI DY GGELF+LLDRQP KVL+EDAVRFYAAEVV
Sbjct: 365 LDMLDHPFLPTLYASFQTKTHICLITDYYPGGELFLLLDRQPQKVLREDAVRFYAAEVVI 544
Query: 2494 ALEYLHCQGIIYRDLKPENILLHRDGHISLTDFDLSCLTSC 2616
ALEYLHCQGIIYRDLKPENILLHRDGHISLTDFDLSCLTSC
Sbjct: 545 ALEYLHCQGIIYRDLKPENILLHRDGHISLTDFDLSCLTSC 667
Score = 362 bits (784), Expect = 8e-099
Identities = 154/221 (69%), Positives = 173/221 (78%)
Frame = -1 / -3
Query: 2616 AGCQARQIKVCQ*NVPISMK*NVLWL*VSVDYTLAM*VFKCCDHFCSIEPDRILLQNLHR 2437
A CQARQIKVCQ VP+SMK*++LWL +SVDYTL M VFKC D+F IEPD I NL R
Sbjct: 667 ARCQARQIKVCQGYVPVSMK*DILWLQISVDYTLTMQVFKCNDNFSCIEPDCIFP*NLLR 488
Query: 2436 LPIKEHKEFPTSTIVNNKTYMCLCLK*CIQCRKEWVVQHIKDLSFSGSSMDLVSVKHDTF 2257
LPI E KE PT ++ NKTYMCL LK*CIQC KEW+VQHIKDLSFS S MDL++VKHD F
Sbjct: 487 LPI*EQKELPTRVVICNKTYMCLRLK*CIQCWKEWMVQHIKDLSFSSSPMDLIAVKHDIF 308
Query: 2256 IHSFHGKVFTCAKQLHQVDTASITRS*RPYWSEMFQINAFTVLKNLLDGSPRCSILHMWL 2077
IH FHGKVFTC QLHQV T+S+TR R Y EMFQIN F+ L N LD SP C ILHMWL
Sbjct: 307 IHRFHGKVFTCL*QLHQVHTSSVTRPQRFYRPEMFQINVFSTLTNFLDSSP*CRILHMWL 128
Query: 2076 WQDWF*VISP*ILRSQISIRKLLCSLINIVCSFLNQYGTIF 1954
WQ++F*V+ P*+LR QISI K CSLINI CSFLNQ+ T+F
Sbjct: 127 WQNYF*VVGP*VLRPQISIWKFFCSLINIFCSFLNQHYTLF 5
Score = 345 bits (748), Expect = 8e-094
Identities = 153/222 (68%), Positives = 164/222 (73%)
Frame = -2 / -1
Query: 2615 QDVKQDKSKSVNEMCPSL*SKMFSGFKSL*IIPWQCRYXXXXXXXXXXXXXXXSFRTFIG 2436
QDV+QDKSKSV +MCPSL*SK+FSGFKS *IIP QC+Y S +TF G
Sbjct: 666 QDVRQDKSKSVRDMCPSL*SKIFSGFKSR*IIP*QCKYSSAMTTSAA*NLTASSRKTF*G 487
Query: 2435 CLSRSIKSSPPAQ*STIRHICVFV*NDAYNVGRNGWSNISRICRSAVALWTLFRLSMTLL 2256
CLSRS KSSPP *S IRHICVFV*NDAYNVGRNGWSNISRICRSAVALWTL RLSMT L
Sbjct: 486 CLSRSRKSSPPG**SVIRHICVFV*NDAYNVGRNGWSNISRICRSAVALWTLLRLSMTFL 307
Query: 2255 SIAFMAKYSPVPSNSTKWTLPVSPDPKGLTGLKCFKSMLSPFSRTFWMALHDAVSFICGF 2076
SIAFMAKYSPV S+STK TLPVSPDPKG TGLKCF+SM SP SRTFW+ALHDA SFICGF
Sbjct: 306 SIAFMAKYSPVFSSSTKCTLPVSPDPKGFTGLKCFRSMFSPPSRTFWIALHDAESFICGF 127
Query: 2075 GKTGFE*LAHRXXXXXXXXXXXXXXXXXXXXXXLTSMAPSFA 1950
GKT FE LAH+ L S+ PSF+
Sbjct: 126 GKTTFEWLAHKSSGLKLASGSSFAASSIFSAVFLISITPSFS 1
Score = 329 bits (712), Expect = 7e-089
Identities = 152/221 (68%), Positives = 166/221 (75%)
Frame = +3 / +1
Query: 1953 KRWCHTG*ENCRQY**GCKGASGC*FET*GSMG*SLKTSLAKATYEGYCIVESHPKGS*E 2132
KR C+ *ENCR+Y**GCK S C*FE G MG LK+S AKATYEG+CI+ES+PK S*
Sbjct: 4 KRGCNAD*ENCRKY**GCKRTSRC*FEAGGLMGQPLKSSFAKATYEGFCIMESYPKSS*G 183
Query: 2133 R*KH*FETFQTSKAFRIW*YWQCPLGGVAWHR*ILCHESYG*KCHA*PKQGP*SYR*TTN 2312
KH* ETFQ K F +W*+W+C LGG A R*ILCHES G*KCHA*P+ GP* Y *TTN
Sbjct: 184 WRKH*SETFQACKTFGVW*HWKCALGGAAKDR*ILCHESDG*KCHA*PQ*GP*GYC*TTN 363
Query: 2313 P*YVGPPIPSDIVCIISDKDTYMSYC*LLCWWGTLYAP**ATYEGSEGGCGQVLCCRSGH 2492
P*YVGP IPS+IVCIISD+DTYMSY LL WWG L AP *AT EG G C QVLC S H
Sbjct: 364 P*YVGPSIPSNIVCIISDEDTYMSYYRLLPWWGALSAPR*ATSEGFTGRCSQVLCS*SCH 543
Query: 2493 ST*IPTLPRYNLQRLKAREHFTS*RWAHFIDRL*FVLLDIL 2615
T*I L RYNL R +ARE+ TS*R AH DRL*FVL DIL
Sbjct: 544 CT*ILALSRYNLPRFEAREYLTS*RRAHIPDRL*FVLPDIL 666
Score = 317 bits (686), Expect = 3e-085
Identities = 149/215 (69%), Positives = 159/215 (73%)
Frame = +2 / +3
Query: 1973 LRKLQTILMRLQRSFRMLI*DLRIYGLITQNQSCQSHI*RILHRGEPSKRFLRTVKALI* 2152
LRKLQ ILMRLQ++F+MLI* R YG TQ CQSHI*RILH GE SK+F+R K LI*
Sbjct: 24 LRKLQKILMRLQKNFQMLI*GRRTYGPTTQK*FCQSHI*RILHHGELSKKFVRVEKTLI* 203
Query: 2153 NISDQ*GL*DLVILAVSTWWSCLAQVNTLP*KLWIKVSCLTETRSIELPLNDKSLICWTT 2332
NIS * L LV L V TWWSC QVNTLP*K WIK+SCLT RSI L LNDKSLICWT
Sbjct: 204 NISGL*NLWGLVTLEVCTWWSC*RQVNTLP*KRWIKMSCLTAIRSIGLLLNDKSLICWTI 383
Query: 2333 HSFRHCMHHFRQRHIYVLLLTIVLVGNSLCSLIGNLXXXXXXXXSGSMLQKWSQHLNTYI 2512
HSF+HCMHHFR+RHIYVLL LVG+S CS IGNL SGSM K S HLNT I
Sbjct: 384 HSFQHCMHHFRRRHIYVLLQITTLVGSSFCS*IGNLRRFYGKMQSGSMQLKLSLHLNTCI 563
Query: 2513 AKV*STET*SQRTFYFIEMGTFH*QTLICLA*HPA 2617
KV*STE *SQR YFIE GT+ *QTLICLA*H A
Sbjct: 564 VKV*STEI*SQRISYFIETGTYP*QTLICLA*HLA 668
Score = 303 bits (656), Expect = 4e-081
Identities = 147/220 (66%), Positives = 157/220 (71%)
Frame = -3 / -2
Query: 2614 RMSSKTNQSLSMKCAHLYEVKCSLALSLCRLYLGNVGIQVL*PLLQHRT*PHPPSEPS*V 2435
+MS KTNQSLS CA LYEV+ SLA +L RLYL N IQV * L HRT* H P +PS V
Sbjct: 665 KMSGKTNQSLSGICARLYEVRYSLASNLGRLYLDNASIQVQ*QLQLHRT*LHLPVKPSEV 486
Query: 2434 AYQGA*RVPHQHNSQQ*DIYVSLSEMMHTMSEGMGGPTYQGFVVQR*LYGPCFG*A*HFY 2255
AY GA R PHQ ++ *DIYVS SEMMHTM EGM GPTYQGFVVQ+* YGP G*A*HFY
Sbjct: 485 AYLGAERAPHQGSNL**DIYVSSSEMMHTMLEGMDGPTYQGFVVQQ*PYGPYCG*A*HFY 306
Query: 2254 P*LSWQSIHLCQATPPSGHCQYHQILKALLV*NVSNQCFHRSQEPFGWLSTMQYPSYVAL 2075
P LSWQSIHL A PPS H Q HQ K L *NVS+QCF E FG LS MQ PSYVAL
Sbjct: 305 PSLSWQSIHLSLAAPPSAHFQCHQTPKVLQA*NVSDQCFLHPHELFG*LSMMQNPSYVAL 126
Query: 2074 ARLVLSD*PIDPQVSN*HPEAPLQPHQYCLQFS*PVWHHL 1955
A+L+LS PI P SN*H E LQPHQY LQFS* H L
Sbjct: 125 AKLLLSGWPISPPASN*HLEVLLQPHQYFLQFS*SALHPL 6
>gb|BF626879.2|BF626879 HVSMEb0001J09f Hordeum vulgare seedling shoot EST library HVcDNA0002
(Dehydration stress) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEb0001J09f, mRNA sequence
Length = 780
Score = 303 bits (657), Expect(2) = e-106
Identities = 123/135 (91%), Positives = 128/135 (94%)
Frame = +1 / +1
Query: 2680 NPIFFAEPMRASNSFVGTEEYIAPEIITGAGHTSAVDWWALGILLYEMLYGYTPFRGKTR 2859
+PIFFAEPMRASNSFVGTEEYIAPEIITGAGHTSAVDWWALGILLYEMLYGYTPFRGKTR
Sbjct: 166 SPIFFAEPMRASNSFVGTEEYIAPEIITGAGHTSAVDWWALGILLYEMLYGYTPFRGKTR 345
Query: 2860 QRTFANILHKDIRFPASIQVSLAARQLIYRLLHRDPANRLGSYEGAMEIKQHPFFRGINW 3039
QRTFANILHKDIRFPASI VSL ARQLIYRLLHRDPANR+GSYEG+ EIKQHPFFRGINW
Sbjct: 346 QRTFANILHKDIRFPASISVSLPARQLIYRLLHRDPANRMGSYEGSNEIKQHPFFRGINW 525
Query: 3040 ALVRAATPPELEAPL 3084
ALVR P +L+APL
Sbjct: 526 ALVRGTAPSKLDAPL 570
Score = 249 bits (539), Expect(2) = 7e-083
Identities = 108/133 (81%), Positives = 113/133 (84%)
Frame = -2 / -2
Query: 3080 GASSSGGVAARTRAQFMPRKKGCCLISIAPS*EPSLFAGSRCSNRYISCLAARLTCMLAG 2901
GASS G RTRAQ MPRK GCC IS PS +P LFAGS CSN ISCLA RLT +LAG
Sbjct: 566 GASSFEGAVPRTRAQLMPRKNGCCFISFDPSYDPILFAGSLCSNL*ISCLAGRLTDILAG 387
Query: 2900 NLISLCRILANVLCLVFPLKGV*PYNISYRRIPSAHQSTALVWPAPVIISGAMYSSVPTK 2721
NL+SLCR+LANVLCLV PLKGV*PY+ISYRRIPSAHQSTALVWPAPVIISGAMYSSVPT
Sbjct: 386 NLMSLCRMLANVLCLVLPLKGV*PYSISYRRIPSAHQSTALVWPAPVIISGAMYSSVPTN 207
Query: 2720 EFDARIGSAKNMG 2682
E DARIGSAKNMG
Sbjct: 206 ELDARIGSAKNMG 168
Score = 173 bits (372), Expect(2) = 1e-059
Identities = 84/143 (58%), Positives = 96/143 (67%)
Frame = -1 / -1
Query: 3078 SLQLWGRGGTN*SPVYATKEGVLFDLHSALIGT*PICRVSV*QPVYQLPCRQAHLYARRK 2899
S+QL + SPV A +E VLF L LI + I + V QPV QLP +AH Y +
Sbjct: 564 SVQLRRSRAAHKSPVDAAEERVLFYLVRPLIRSHSIRGIPVQQPVDQLPSWEAHRYTCGE 385
Query: 2898 SDILVQNISKCPLSCFPSEGCITI*HLI*KNS*RPPIYSTRMASSGNNLRCNVLLCTNKR 2719
SD+LV ++ KCPL F SEGC+TI H I KN *RPPI ST MASSGNNLRCNVL CTNK
Sbjct: 384 SDVLV*DVGKCPLPGFTSEGCVTIQHFIQKNP*RPPINSTCMASSGNNLRCNVLFCTNK* 205
Query: 2718 I*CSHWFSKKYGITPALPPLFLL 2650
I CSH F KKYG TPA PP FL+
Sbjct: 204 IGCSHRFRKKYG*TPAFPPTFLI 136
Score = 171 bits (369), Expect(2) = 2e-056
Identities = 73/133 (54%), Positives = 95/133 (71%)
Frame = +3 / +3
Query: 2682 SHIFC*TNASIKFFCWYRGVHCTGDYYRSWPYECCRLVGARNSSI*DVIWLYTLQRENKT 2861
+HIFC T+ASI+F CWYR VHCT DYYRSWPY+CC LVGAR+SS+*+ +WL+TLQR N+
Sbjct: 168 THIFCGTDASIQFICWYRRVHCT*DYYRSWPYKCC*LVGARDSSV*NAVWLHTLQR*NQA 347
Query: 2862 KDIC*YSAQGYQISCEHTGEPGGKAADIPVATPRPCK*ARFL*GRYGDQTTPLLSWHKLG 3041
KDIC + QG+QI ++ GEP AAD+ VA +* +*G D+TTP+L H+LG
Sbjct: 348 KDICQHPTQGHQIPRKYIGEPPS*AADLQVAAQGSRE*NGIV*GVERDKTTPVLPRHQLG 527
Query: 3042 SSSCRHAPRAGGS 3080
S + + AG S
Sbjct: 528 SCARHGSFEAGRS 566
Score = 161 bits (346), Expect(2) = 6e-050
Identities = 84/142 (59%), Positives = 93/142 (65%)
Frame = +2 / +2
Query: 2654 RKRGGRAGVIPYFLLNQCEHQILLLVQRSTLHRRLLPELAIRVL*IGGR*EFFYMRCYMV 2833
RK GG+AGV PYFL N+CEH I LLVQ+STLH RLLPELAI+VL IGGR* FF M+C MV
Sbjct: 140 RKVGGKAGVHPYFLRNRCEHPIHLLVQKSTLHLRLLPELAIQVLLIGGR*GFFCMKCCMV 319
Query: 2834 IHPSEGKQDKGHLLIFCTRISDFLRAYR*AWRQGS*YTGCYTETLQIG*VPMRALWRSNN 3013
HPSE K KGHL TR SD + YR*A + GS* TGC T +I MR R NN
Sbjct: 320 THPSEVKPGKGHLPTSYTRTSDSPQVYR*ASQLGS*STGCCTGIPRIEWDRMRGRTR*NN 499
Query: 3014 TPSFVA*TGL*FVPPRPQSWRL 3079
T S A TGL +SW L
Sbjct: 500 TRSSAASTGLLCAARLLRSWTL 565
Score = 130 bits (279), Expect(2) = 3e-039
Identities = 74/139 (53%), Positives = 79/139 (56%)
Frame = -3 / -3
Query: 3100 PPMYPGGEPPALGAWRHELEPSLCHERRGVV*SP*RPHRNLAYLQGLGVATGISAALPPG 2921
P ++ E PA EPS C R GVV S PH Y + AT SAA G
Sbjct: 586 PRLWKTVERPASKEPCRAQEPS*CRGRTGVVLSRSTPHTIPFYSRDPCAATCRSAA*LGG 407
Query: 2920 SPVCSQEI*YPCAEY*QMSFVLFSL*RVYNHITSHIEEFLAPTNLQHSYGQLR**SPVQC 2741
SP+ + I* PC QMSF F L*RV NH H EE LAPTN QH YGQLR**S VQC
Sbjct: 406 SPIYLRGI*CPCVGCWQMSFAWFYL*RVCNHTAFHTEESLAPTNQQHLYGQLR**SQVQC 227
Query: 2740 TPLYQQKNLMLALVQQKIW 2684
T LYQQ N MLA V QKIW
Sbjct: 226 TLLYQQMNWMLASVPQKIW 170
Score = 105 bits (223), Expect(2) = e-106
Identities = 41/43 (95%), Positives = 42/43 (97%)
Frame = +1 / +1
Query: 2515 QGIIYRDLKPENILLHRDGHISLTDFDLSCLTSCRPQVFLPHD 2643
QGIIYRDLKPENILLHRDGHISLTDFDLSCLTSCRPQVFLP +
Sbjct: 4 QGIIYRDLKPENILLHRDGHISLTDFDLSCLTSCRPQVFLPEE 132
Score = 80.3 bits (169), Expect(2) = 7e-083
Identities = 34/42 (80%), Positives = 37/42 (88%)
Frame = -2 / -2
Query: 2642 SCGRNTCGRQDVKQDKSKSVNEMCPSL*SKMFSGFKSL*IIP 2517
S GR TCG QDV+QDKSKSV +MCPSL*SK+FSGFKS *IIP
Sbjct: 131 SSGRKTCGLQDVRQDKSKSVRDMCPSL*SKIFSGFKSR*IIP 6
Score = 79.4 bits (167), Expect(2) = 1e-059
Identities = 34/50 (68%), Positives = 39/50 (78%)
Frame = -1 / -1
Query: 2664 PLFLLINIVWKKHLWSAGCQARQIKVCQ*NVPISMK*NVLWL*VSVDYTL 2515
P LI+ WKK L SA CQARQIKVCQ VP+SMK*++LWL +SVDYTL
Sbjct: 153 PPTFLISFFWKKDLRSARCQARQIKVCQGYVPVSMK*DILWLQISVDYTL 4
Score = 70.3 bits (147), Expect(2) = 2e-056
Identities = 34/51 (66%), Positives = 38/51 (74%)
Frame = +2 / +2
Query: 2513 AKV*STET*SQRTFYFIEMGTFH*QTLICLA*HPADHKCFFHTILIRRKRG 2665
+KV*STE *SQR YFIE GT+ *QTLICLA*H AD + FF LIR+ G
Sbjct: 2 SKV*STEI*SQRISYFIETGTYP*QTLICLA*HLADRRSFFQKKLIRKVGG 154
Score = 58.8 bits (122), Expect(2) = 6e-050
Identities = 28/42 (66%), Positives = 31/42 (73%)
Frame = +3 / +3
Query: 2517 RYNLQRLKAREHFTS*RWAHFIDRL*FVLLDILPTTSVSSTR 2642
RYNL R +ARE+ TS*R AH DRL*FVL DIL T +SS R
Sbjct: 6 RYNLPRFEAREYLTS*RRAHIPDRL*FVLPDILQTAGLSSRR 131
Score = 53.8 bits (111), Expect(2) = 3e-039
Identities = 26/41 (63%), Positives = 30/41 (73%)
Frame = -3 / -3
Query: 2638 VEETLVVGRMSSKTNQSLSMKCAHLYEVKCSLALSLCRLYL 2516
+EE V +MS KTNQSLS CA LYEV+ SLA +L RLYL
Sbjct: 127 LEERPAVCKMSGKTNQSLSGICARLYEVRYSLASNLGRLYL 5
>gb|BU988158.1|BU988158 HF16N05r HF Hordeum vulgare subsp. vulgare cDNA clone HF16N05
5-PRIME, mRNA sequence
Length = 649
Score = 224 bits (484), Expect(3) = 4e-095
Identities = 94/110 (85%), Positives = 100/110 (90%)
Frame = +1 / +2
Query: 973 GSNYCGRILNYKKDGTPFWNLLTVAPIKDEDGRVLKFIGMQVEVSKYTEGNKDTALRPNG 1152
G+ R+LNYKKDGT FWNLLT+APIKDEDGRVLKFIGMQVEVSKYTEGNKDT +RPNG
Sbjct: 2 GTRLSSRVLNYKKDGTAFWNLLTIAPIKDEDGRVLKFIGMQVEVSKYTEGNKDTVVRPNG 181
Query: 1153 LPESLIKYDARQKDHARSSVSELLLALKDPRSLSESRNNTLKRKSQESAG 1302
LPESLIKYDARQKD ARSSVSELLLALK+PRSLSES N+T KRKSQES G
Sbjct: 182 LPESLIKYDARQKDQARSSVSELLLALKNPRSLSESSNSTFKRKSQESVG 331
Score = 204 bits (441), Expect(3) = 8e-077
Identities = 90/115 (78%), Positives = 95/115 (82%)
Frame = -2 / -2
Query: 1328 LLLPGTRAEPADSCDFLFKVLFLDSDNDRGSFRASRSSETELRA*SFCLASYLMSDSGNP 1149
L +P P DSCDFL KVL LDSDNDRG RA+RSS+TELRA*SFCLASYLMSDSG+P
Sbjct: 357 LPVPSPVNTPTDSCDFLLKVLLLDSDNDRGFLRANRSSDTELRA*SFCLASYLMSDSGSP 178
Query: 1148 FGRRAVSLLPSVYLLTSTCIPMNLRTLPSSSFMGATVRRFQNGVPSFL*LRIRPQ 984
FGR VSL PSVYLLTSTCIPMNLRTLPSSS MGA V RFQN VPSFL*LR R +
Sbjct: 177 FGRTTVSLFPSVYLLTSTCIPMNLRTLPSSSLMGAMVSRFQNAVPSFL*LRTREE 13
Score = 163 bits (351), Expect(3) = 1e-063
Identities = 75/105 (71%), Positives = 80/105 (76%)
Frame = +2 / +3
Query: 983 TVAVSSTTRRMAHHSGTS*PLPP*RMRMAGSSSSLGCKWK*VSTRKVTKILLFVQMDCQS 1162
++ VSSTTRRMA HSGT *PLPP RMRMAGSSSS GCKWK*V+T K T+ LLFVQMDCQS
Sbjct: 12 SLLVSSTTRRMARHSGTC*PLPPSRMRMAGSSSS*GCKWK*VNTLKGTRTLLFVQMDCQS 191
Query: 1163 HSSNMMQGRRIMLVAQSRSSYLP*RIHGHCQNQETIP*KGNHRNQ 1297
HSSNMM GRRI VA+ S R GHCQNQ P K NHRNQ
Sbjct: 192 HSSNMMLGRRIRPVARCLSFCWLSRTRGHCQNQVIAPSKENHRNQ 326
Score = 157 bits (337), Expect(3) = 2e-048
Identities = 70/106 (66%), Positives = 81/106 (76%)
Frame = +3 / +1
Query: 984 LWPYPQLQEGWHTILEPPNRCPHKG*GWQGPQVHWDASGSK*VHGR*QRYCSSSKWIARV 1163
L+ PQLQEGWH ILEP + CPH+G*GWQGPQVH DASGS+*+H R Q +C SSKW ARV
Sbjct: 13 LFSCPQLQEGWHGILEPADHCPHQG*GWQGPQVHRDASGSE*IH*REQGHCCSSKWTARV 192
Query: 1164 THQI*CKAEGSCS*LSLGAPTCPEGSTVIVRIKKQYLKKEITGISR 1301
THQI*C AEGS *L + A + VIVRIK +L+K+ITGISR
Sbjct: 193 THQI*C*AEGSGP*LGV*ASVGSQEPAVIVRIK**HLQKKITGISR 330
Score = 154 bits (331), Expect(3) = 5e-058
Identities = 71/102 (69%), Positives = 82/102 (80%)
Frame = -1 / -1
Query: 1296 *FL*FPF*GIVS*F*Q*PWILQGK*ELRD*ATSMILLPCIIFDE*LWQSIWTKSSIFVTF 1117
*FL*F F G ++*F*Q*P +L+ + +LR AT +ILLP IIFDE*LWQSIWT +S+ V F
Sbjct: 325 *FL*FSFEGAIT*F*Q*PRVLESQQKLRHRATGLILLPSIIFDE*LWQSIWTNNSVLVPF 146
Query: 1116 RVLTYFHLHPNELEDPAILILYGGNG*EVPEWCAILLVVEDT 991
V T+FHLHP ELEDPAILIL GGNG +VPE AILLVVEDT
Sbjct: 145 SVFTHFHLHPYELEDPAILILDGGNGQQVPECRAILLVVEDT 20
Score = 122 bits (261), Expect(3) = 4e-095
Identities = 50/63 (79%), Positives = 57/63 (90%)
Frame = +1 / +2
Query: 1318 GKRSSETGSRRNSHSGMRNSLQKISEVPEGGNKTRKSGLRSFMGLIGMGHGNVEKNILKP 1497
GKRSSE+GSRR S +G R+SLQKISEVPEGGNK RKSGL S MGL+GMGHGNVEKN+LKP
Sbjct: 353 GKRSSESGSRRTSRTGARSSLQKISEVPEGGNKARKSGLFSLMGLLGMGHGNVEKNMLKP 532
Query: 1498 RED 1506
R++
Sbjct: 533 RDE 541
Score = 77.6 bits (163), Expect(3) = 1e-063
Identities = 31/60 (51%), Positives = 43/60 (71%)
Frame = +3 / +1
Query: 1320 QEKLRNWIPS*LT*WNEKLSTKNQ*GA*RRE*DQEIWFAFFYGPYWYGTWECREEHSKTK 1499
QEKLR WI + LT W++KL+ ++Q *RR+* +I F YG WYG W+CR+EH++TK
Sbjct: 355 QEKLREWISTYLTYWSKKLTAEDQRST*RRQ*S*KIGSVFTYGFTWYGPWKCRKEHAETK 534
Score = 69.8 bits (146), Expect(4) = 8e-037
Identities = 27/34 (79%), Positives = 28/34 (82%)
Frame = -3 / -3
Query: 1093 ASQ*T*GPCHPHPLWGQRLGGSRMVCHPSCS*GY 992
AS *T*GPCHPHP WGQ GSRM CHPSCS*G+
Sbjct: 122 ASL*T*GPCHPHP*WGQWSAGSRMPCHPSCS*GH 21
Score = 69.8 bits (146), Expect(3) = 8e-077
Identities = 28/37 (75%), Positives = 31/37 (83%)
Frame = -2 / -2
Query: 1427 DFLVLFPPSGTSLIFCREFLIPLCELRRDPVSELLLP 1317
DFL L PPSGTSLIFC E L P+ E+RRDP+SELLLP
Sbjct: 462 DFLALLPPSGTSLIFCSELLAPVREVRRDPLSELLLP 352
Score = 68.0 bits (142), Expect(4) = 8e-037
Identities = 35/56 (62%), Positives = 38/56 (67%)
Frame = -3 / -3
Query: 1300 LLIPVISFLRYCFLILTMTVDPSGQVGAPRLSYEHDPSALHHI**VTLAIHLDEEQ 1133
LLIPVI F R +LILTMT A SY DPSA HHI**VTLA+HLDE+Q
Sbjct: 329 LLIPVIFF*RCYYLILTMTAGS*EPTEAQTPSYGPDPSA*HHI**VTLAVHLDEQQ 162
Score = 58.3 bits (121), Expect(3) = 5e-058
Identities = 30/60 (50%), Positives = 36/60 (60%)
Frame = -1 / -1
Query: 1497 WF*NVLLYIPMSHTNKAHKRTQTRFPGLIPSFRHLTDFL*RVSHSTM*VTTGSSFGASLA 1318
WF +VL YI M+HT HK QTRF I SFR+ D L S S+ * T+ S+ ASLA
Sbjct: 532 WFQHVLFYISMAHTK*THK*KQTRFSSFIASFRYFADLLQ*ASCSST*GTSRSTL*ASLA 353
Score = 54.2 bits (112), Expect(3) = 8e-077
Identities = 26/44 (59%), Positives = 30/44 (68%)
Frame = -3 / -3
Query: 1609 YVQVW*PNLCPFSFLSS*NRHRSYLVSHHRYQVGDLPLVLECSS 1478
YVQV *P+L PFSFLSS RH+S V HH QV DL L++ S
Sbjct: 647 YVQV**PSLYPFSFLSSLARHQSSQVFHHHCQVADLHLLVSACS 516
Score = 52.8 bits (109), Expect(3) = 5e-058
Identities = 22/37 (59%), Positives = 28/37 (75%)
Frame = -1 / -1
Query: 1611 NTFKCGSQIYALSHFFLPEIVIEAIWSLIIAIK*GIF 1501
+TFKC SQ+Y SHFF P +VI+A+ S II +K* IF
Sbjct: 649 DTFKCSSQVYTPSHFFPP*LVIKALRSFIITVK*RIF 539
Score = 50.1 bits (103), Expect(4) = 8e-037
Identities = 28/61 (45%), Positives = 30/61 (49%)
Frame = -3 / -3
Query: 1498 LVLECSSLHSHVPYQ*GP*KNANQISWSYSLLQAPH*FFVESFSFHYVSYDGIQFRSFSC 1319
LV CS LH H PYQ P* + I Y LLQ * SF YV Y I SFSC
Sbjct: 533 LVSACSFLHFHGPYQVNP*VKTDPIF*LYCLLQVLR*SSAVSFLLQYVRYVEIHSLSFSC 354
Query: 1318 R 1316
+
Sbjct: 353 Q 351
Score = 43.7 bits (89), Expect(3) = 1e-063
Identities = 25/45 (55%), Positives = 31/45 (68%)
Frame = +3 / +1
Query: 1476 REEHSKTKGRSPT**R**ETR*LR*RFQEERNEKGHRFGYHT*TY 1610
+E + RS T* **+T L *R +EERNEKG+R GY+T*TY
Sbjct: 514 KEHAETKR*RSAT*Q***KT*EL**RAKEERNEKGYRLGYYT*TY 648
Score = 43.2 bits (88), Expect(3) = 2e-048
Identities = 20/37 (54%), Positives = 22/37 (59%)
Frame = +1 / +2
Query: 1501 EDPLLXXXXXXXXXXXXXXXKKEMRKGIDLATTLERI 1611
EDPLL +KEMR+GIDLATTLERI
Sbjct: 539 EDPLLDSDDERPESFDDELRRKEMRRGIDLATTLERI 649
Score = 43.2 bits (88), Expect(3) = 4e-095
Identities = 22/36 (61%), Positives = 23/36 (63%)
Frame = +2 / +3
Query: 1502 KIPYLIAMMRDQIASMTISGRKK*ERA*IWLPHLNV 1609
KI YL MM+D A MT G KK*E * WL HLNV
Sbjct: 540 KIRYLTVMMKDLRALMTS*GGKK*EGV*TWLLHLNV 647
Score = 32.7 bits (65), Expect(3) = 2e-048
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +2 / +3
Query: 1319 AREAPKLDPVVTHIVE*ETLYKKSVRCLKEGIRPGN 1426
AREA ++D V H++E E ++S + LKE I+ N
Sbjct: 354 AREAQRVDLDVPHVLEQEAHCRRSAKYLKEAIKLEN 461
Score = 24.0 bits (46), Expect(4) = 8e-037
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = -2 / -2
Query: 1610 IRSSVVAKSMP 1578
IRSSVVAKS+P
Sbjct: 648 IRSSVVAKSIP 616
>gb|BU997959.1|BU997959 HI09I16r HI Hordeum vulgare subsp. vulgare cDNA clone HI09I16
5-PRIME, mRNA sequence
Length = 665
Score = 307 bits (665), Expect(2) = 6e-095
Identities = 124/135 (91%), Positives = 129/135 (95%)
Frame = +1 / +2
Query: 2680 NPIFFAEPMRASNSFVGTEEYIAPEIITGAGHTSAVDWWALGILLYEMLYGYTPFRGKTR 2859
+PIFFAEPMRASNSFVGTEEYIAPEIITGAGHTSAVDWWALGILLYEMLYGYTPFRGKTR
Sbjct: 122 SPIFFAEPMRASNSFVGTEEYIAPEIITGAGHTSAVDWWALGILLYEMLYGYTPFRGKTR 301
Query: 2860 QRTFANILHKDIRFPASIQVSLAARQLIYRLLHRDPANRLGSYEGAMEIKQHPFFRGINW 3039
QRTFANILHKDIRFPASI VSL ARQLIYRLLHRDPANR+GSYEG+ EIKQHPFFRGINW
Sbjct: 302 QRTFANILHKDIRFPASISVSLPARQLIYRLLHRDPANRMGSYEGSNEIKQHPFFRGINW 481
Query: 3040 ALVRAATPPELEAPL 3084
ALVR PP+L+APL
Sbjct: 482 ALVRGTAPPKLDAPL 526
Score = 253 bits (547), Expect(2) = 7e-076
Identities = 109/133 (81%), Positives = 114/133 (85%)
Frame = -2 / -3
Query: 3080 GASSSGGVAARTRAQFMPRKKGCCLISIAPS*EPSLFAGSRCSNRYISCLAARLTCMLAG 2901
GASS GG RTRAQ MPRK GCC IS PS +P LFAGS CSN ISCLA RLT +LAG
Sbjct: 522 GASSFGGAVPRTRAQLMPRKNGCCFISFDPSYDPILFAGSLCSNL*ISCLAGRLTDILAG 343
Query: 2900 NLISLCRILANVLCLVFPLKGV*PYNISYRRIPSAHQSTALVWPAPVIISGAMYSSVPTK 2721
NL+SLCR+LANVLCLV PLKGV*PY+ISYRRIPSAHQSTALVWPAPVIISGAMYSSVPT
Sbjct: 342 NLMSLCRMLANVLCLVLPLKGV*PYSISYRRIPSAHQSTALVWPAPVIISGAMYSSVPTN 163
Query: 2720 EFDARIGSAKNMG 2682
E DARIGSAKNMG
Sbjct: 162 ELDARIGSAKNMG 124
Score = 173 bits (372), Expect(2) = 4e-050
Identities = 84/143 (58%), Positives = 96/143 (67%)
Frame = -1 / -2
Query: 3078 SLQLWGRGGTN*SPVYATKEGVLFDLHSALIGT*PICRVSV*QPVYQLPCRQAHLYARRK 2899
S+QL + SPV A +E VLF L LI + I + V QPV QLP +AH Y +
Sbjct: 520 SVQLRRSRAAHKSPVDAAEERVLFYLVRPLIRSHSIRGIPVQQPVDQLPSWEAHRYTCGE 341
Query: 2898 SDILVQNISKCPLSCFPSEGCITI*HLI*KNS*RPPIYSTRMASSGNNLRCNVLLCTNKR 2719
SD+LV ++ KCPL F SEGC+TI H I KN *RPPI ST MASSGNNLRCNVL CTNK
Sbjct: 340 SDVLV*DVGKCPLPGFTSEGCVTIQHFIQKNP*RPPINSTCMASSGNNLRCNVLFCTNK* 161
Query: 2718 I*CSHWFSKKYGITPALPPLFLL 2650
I CSH F KKYG TPA PP FL+
Sbjct: 160 IGCSHRFRKKYG*TPAFPPTFLI 92
Score = 173 bits (372), Expect(2) = 4e-049
Identities = 73/133 (54%), Positives = 95/133 (71%)
Frame = +3 / +1
Query: 2682 SHIFC*TNASIKFFCWYRGVHCTGDYYRSWPYECCRLVGARNSSI*DVIWLYTLQRENKT 2861
+HIFC T+ASI+F CWYR VHCT DYYRSWPY+CC LVGAR+SS+*+ +WL+TLQR N+
Sbjct: 124 THIFCGTDASIQFICWYRRVHCT*DYYRSWPYKCC*LVGARDSSV*NAVWLHTLQR*NQA 303
Query: 2862 KDIC*YSAQGYQISCEHTGEPGGKAADIPVATPRPCK*ARFL*GRYGDQTTPLLSWHKLG 3041
KDIC + QG+QI ++ GEP AAD+ VA +* +*G D+TTP+L H+LG
Sbjct: 304 KDICQHPTQGHQIPRKYIGEPPS*AADLQVAAQGSRE*NGIV*GVERDKTTPVLPRHQLG 483
Query: 3042 SSSCRHAPRAGGS 3080
S + + AG S
Sbjct: 484 SCARHGSSEAGRS 522
Score = 161 bits (346), Expect(2) = 2e-042
Identities = 84/142 (59%), Positives = 93/142 (65%)
Frame = +2 / +3
Query: 2654 RKRGGRAGVIPYFLLNQCEHQILLLVQRSTLHRRLLPELAIRVL*IGGR*EFFYMRCYMV 2833
RK GG+AGV PYFL N+CEH I LLVQ+STLH RLLPELAI+VL IGGR* FF M+C MV
Sbjct: 96 RKVGGKAGVHPYFLRNRCEHPIHLLVQKSTLHLRLLPELAIQVLLIGGR*GFFCMKCCMV 275
Query: 2834 IHPSEGKQDKGHLLIFCTRISDFLRAYR*AWRQGS*YTGCYTETLQIG*VPMRALWRSNN 3013
HPSE K KGHL TR SD + YR*A + GS* TGC T +I MR R NN
Sbjct: 276 THPSEVKPGKGHLPTSYTRTSDSPQVYR*ASQLGS*STGCCTGIPRIEWDRMRGRTR*NN 455
Query: 3014 TPSFVA*TGL*FVPPRPQSWRL 3079
T S A TGL +SW L
Sbjct: 456 TRSSAASTGLLCAARLLRSWTL 521
Score = 129 bits (277), Expect(2) = 6e-032
Identities = 70/120 (58%), Positives = 73/120 (60%)
Frame = -3 / -1
Query: 3043 EPSLCHERRGVV*SP*RPHRNLAYLQGLGVATGISAALPPGSPVCSQEI*YPCAEY*QMS 2864
EPS C R GVV S PH Y + AT SAA GSP+ + I* PC QMS
Sbjct: 485 EPS*CRGRTGVVLSRSTPHTIPFYSRDPCAATCRSAA*LGGSPIYLRGI*CPCVGCWQMS 306
Query: 2863 FVLFSL*RVYNHITSHIEEFLAPTNLQHSYGQLR**SPVQCTPLYQQKNLMLALVQQKIW 2684
F F L*RV NH H EE LAPTN QH YGQLR**S VQCT LYQQ N MLA V QKIW
Sbjct: 305 FAWFYL*RVCNHTAFHTEESLAPTNQQHLYGQLR**SQVQCTLLYQQMNWMLASVPQKIW 126
Score = 62.9 bits (131), Expect(2) = 6e-095
Identities = 24/27 (88%), Positives = 25/27 (92%)
Frame = +1 / +2
Query: 2563 RDGHISLTDFDLSCLTSCRPQVFLPHD 2643
R GHISLTDFDLSCLTSCRPQVFLP +
Sbjct: 8 RAGHISLTDFDLSCLTSCRPQVFLPEE 88
Score = 53.3 bits (110), Expect(2) = 7e-076
Identities = 20/27 (74%), Positives = 23/27 (85%)
Frame = -2 / -3
Query: 2642 SCGRNTCGRQDVKQDKSKSVNEMCPSL 2562
S GR TCG QDV+QDKSKSV +MCP+L
Sbjct: 87 SSGRKTCGLQDVRQDKSKSVRDMCPAL 7
Score = 47.3 bits (97), Expect(2) = 4e-050
Identities = 21/32 (65%), Positives = 22/32 (68%)
Frame = -1 / -2
Query: 2664 PLFLLINIVWKKHLWSAGCQARQIKVCQ*NVP 2569
P LI+ WKK L SA CQARQIKVCQ VP
Sbjct: 109 PPTFLISFFWKKDLRSARCQARQIKVCQGYVP 14
Score = 44.1 bits (90), Expect(2) = 4e-049
Identities = 20/32 (62%), Positives = 23/32 (71%)
Frame = +2 / +3
Query: 2570 GTFH*QTLICLA*HPADHKCFFHTILIRRKRG 2665
GT+ *QTLICLA*H AD + FF LIR+ G
Sbjct: 15 GTYP*QTLICLA*HLADRRSFFQKKLIRKVGG 110
Score = 33.6 bits (67), Expect(2) = 2e-042
Identities = 16/24 (66%), Positives = 17/24 (70%)
Frame = +3 / +1
Query: 2571 AHFIDRL*FVLLDILPTTSVSSTR 2642
AH DRL*FVL DIL T +SS R
Sbjct: 16 AHIPDRL*FVLPDILQTAGLSSRR 87
Score = 29.9 bits (59), Expect(2) = 6e-032
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = -3 / -1
Query: 2638 VEETLVVGRMSSKTNQSLSMKCA 2570
+EE V +MS KTNQSLS CA
Sbjct: 83 LEERPAVCKMSGKTNQSLSGICA 15
>gb|BJ468963.1|BJ468963 BJ468963 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal12d11 5', mRNA sequence
Length = 629
Score = 223 bits (481), Expect(3) = 3e-087
Identities = 91/133 (68%), Positives = 106/133 (79%)
Frame = +1 / +2
Query: 1933 RVREAAAKDGAILVKKTADNIDEAAKELPDANLRPEDLWANHSKPVLPKPHMKDTASWRA 2112
R+ E A LVK TA N+DEA +ELPDANLRPEDLWA HS V PKPH ++ +SW+A
Sbjct: 230 RLSENTEIQSAKLVKATAGNVDEAVRELPDANLRPEDLWAVHSLSVSPKPHKRNNSSWKA 409
Query: 2113 IQKVLENGESIDLKHFRPVRPLGSGDTGSVHLVELLGTGEYFAMKAMDKSVMLNRNKVHR 2292
I+K++E GE I LKHF+PV+PLG GDTGSVHLVEL G+GE FAMKAMDKSVMLNRNKVHR
Sbjct: 410 IEKIMETGEKIGLKHFKPVKPLGCGDTGSVHLVELQGSGELFAMKAMDKSVMLNRNKVHR 589
Query: 2293 ATAERQILDMLDH 2331
A ER+I +LDH
Sbjct: 590 AIIEREIYSLLDH 628
Score = 118 bits (252), Expect(3) = 3e-087
Identities = 48/59 (81%), Positives = 53/59 (89%)
Frame = +1 / +2
Query: 1762 TVKKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDVQYFIGVQLDGTERV 1938
TV KIR+AI Q EVTVQLINYTKSGKKFWNLFHLQPM DQKG++QYFIGVQLDG++ V
Sbjct: 38 TVDKIREAIREQKEVTVQLINYTKSGKKFWNLFHLQPMWDQKGELQYFIGVQLDGSDHV 214
Score = 111 bits (236), Expect(2) = 1e-040
Identities = 56/132 (42%), Positives = 71/132 (53%)
Frame = -2 / -3
Query: 2327 SNISRICRSAVALWTLFRLSMTLLSIAFMAKYSPVPSNSTKWTLPVSPDPKGLTGLKCFK 2148
SN I S +A TL R ++T LSIAF+A SP+P NSTK TLPVSP P+G TGLKCFK
Sbjct: 624 SNSEYISLSIIARCTLLRFNITDLSIAFIANNSPLPCNSTKCTLPVSPHPRGFTGLKCFK 445
Query: 2147 SMLSPFSRTFWMALHDAVSFICGFGKTGFE*LAHRXXXXXXXXXXXXXXXXXXXXXXLTS 1968
+ SP S F +A + + + GFG+T E AHR LTS
Sbjct: 444 PIFSPVSIIFSIAFQEELFRL*GFGETDSECTAHRSSGLKLASGSSLTASSTFPAVALTS 265
Query: 1967 MAPSFAAASRTR 1932
+A + S +R
Sbjct: 264 LALCISVFSESR 229
Score = 104 bits (222), Expect(2) = 2e-031
Identities = 53/126 (42%), Positives = 72/126 (57%)
Frame = -1 / -2
Query: 2307 SFSGSSMDLVSVKHDTFIHSFHGKVFTCAKQLHQVDTASITRS*RPYWSEMFQINAFTVL 2128
SF+ SSM LV+V+H F+H H K FT QL+QV TAS+ *R YW E+FQ N
Sbjct: 604 SFNNSSMHLVAVQHH*FVHCLHRK*FTTTLQLNQVYTASVPTP*RLYWLEVFQANLLPGF 425
Query: 2127 KNLLDGSPRCSILHMWLWQDWF*VISP*ILRSQISIRKLLCSLINIVCSFLNQYGTIFCS 1948
NL PR I + W++ *V P +L SQ+ IRKL I+I C +Q+GT++
Sbjct: 424 HNLFYSFPRRVIPFVRFWRNR**VHRPQVLWSQVGIRKLPDCFIHIPCCSFDQFGTLYLG 245
Query: 1947 SLSNTL 1930
L ++
Sbjct: 244 VLRESV 227
Score = 78.0 bits (164), Expect(2) = 1e-040
Identities = 38/59 (64%), Positives = 44/59 (74%)
Frame = -2 / -3
Query: 1937 TRSVPSN*TPMKY*TSPF*SRIGCK*KRFQNFLPLFV*FIS*TVTSVWLSMASLIFFTV 1761
T S+PS+ TP+KY*+SPF S IGC+* +FQNF PL V* IS TVTS MASLI TV
Sbjct: 213 T*SLPSSCTPIKY*SSPFWSHIGCR*NKFQNFFPLLV*LISWTVTSFCSLMASLILSTV 37
Score = 75.8 bits (159), Expect(2) = 5e-022
Identities = 46/117 (39%), Positives = 59/117 (50%)
Frame = +3 / +1
Query: 1962 CHTG*ENCRQY**GCKGASGC*FET*GSMG*SLKTSLAKATYEGYCIVESHPKGS*ER*K 2141
C TG R+ * +GAS C ET G +G +L +K + +ES+ K R +
Sbjct: 259 CQTGQSYSRECG*SSQGAS*CQLETRGPVGGALTICFSKTSQTE*LFLESYRKDYGNRGE 438
Query: 2142 H*FETFQTSKAFRIW*YWQCPLGGVAWHR*ILCHESYG*KCHA*PKQGP*SYR*TTN 2312
ET Q SKA R+W +WQC LG VA *I+C E G P+QG SY * N
Sbjct: 439 DWLETLQASKASRVWGHWQCTLG*VAR*W*IICDEGNGQISDVEPQQGASSYY*KRN 609
Score = 55.1 bits (114), Expect(2) = 5e-022
Identities = 21/59 (35%), Positives = 35/59 (59%)
Frame = +1 / +2
Query: 943 ISKIRQALAAGSNYCGRILNYKKDGTPFWNLLTVAPIKDEDGRVLKFIGMQVEVSKYTE 1119
+ KIR+A+ +++NY K G FWNL + P+ D+ G + FIG+Q++ S + E
Sbjct: 41 VDKIREAIREQKEVTVQLINYTKSGKKFWNLFHLQPMWDQKGELQYFIGVQLDGSDHVE 217
Score = 53.8 bits (111), Expect(2) = 2e-031
Identities = 24/57 (42%), Positives = 40/57 (70%)
Frame = -1 / -2
Query: 1938 NTLSSIQLNPNEVLNITLLITHRLQVKEVPEFLTALCIIYQLNSNFCLVIYGISYLL 1768
N ++SI+L+ ++VL + LL+ HRLQVK+VPE L AL ++ L+ + L+ G+ L+
Sbjct: 214 NMIASIKLHADKVLKLPLLVPHRLQVKQVPELLPALGVVD*LDGDLLLLPDGLPDLV 44
Score = 22.1 bits (42), Expect(3) = 3e-087
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +1 / +1
Query: 1729 RFLQGPETDR 1758
RFLQG ETD+
Sbjct: 4 RFLQGSETDQ 33
>gb|AV926878.1|AV926878 AV926878 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd24k23 5', mRNA sequence
Length = 703
Score = 307 bits (665), Expect(2) = 7e-087
Identities = 124/135 (91%), Positives = 129/135 (95%)
Frame = +1 / +1
Query: 2680 NPIFFAEPMRASNSFVGTEEYIAPEIITGAGHTSAVDWWALGILLYEMLYGYTPFRGKTR 2859
+PIFFAEPMRASNSFVGTEEYIAPEIITGAGHTSAVDWWALGILLYEMLYGYTPFRGKTR
Sbjct: 106 SPIFFAEPMRASNSFVGTEEYIAPEIITGAGHTSAVDWWALGILLYEMLYGYTPFRGKTR 285
Query: 2860 QRTFANILHKDIRFPASIQVSLAARQLIYRLLHRDPANRLGSYEGAMEIKQHPFFRGINW 3039
QRTFANILHKDIRFPASI VSL ARQLIYRLLHRDPANR+GSYEG+ EIKQHPFFRGINW
Sbjct: 286 QRTFANILHKDIRFPASISVSLPARQLIYRLLHRDPANRMGSYEGSNEIKQHPFFRGINW 465
Query: 3040 ALVRAATPPELEAPL 3084
ALVR PP+L+APL
Sbjct: 466 ALVRGTAPPKLDAPL 510
Score = 253 bits (547), Expect(2) = 2e-068
Identities = 109/133 (81%), Positives = 114/133 (85%)
Frame = -2 / -3
Query: 3080 GASSSGGVAARTRAQFMPRKKGCCLISIAPS*EPSLFAGSRCSNRYISCLAARLTCMLAG 2901
GASS GG RTRAQ MPRK GCC IS PS +P LFAGS CSN ISCLA RLT +LAG
Sbjct: 506 GASSFGGAVPRTRAQLMPRKNGCCFISFDPSYDPILFAGSLCSNL*ISCLAGRLTDILAG 327
Query: 2900 NLISLCRILANVLCLVFPLKGV*PYNISYRRIPSAHQSTALVWPAPVIISGAMYSSVPTK 2721
NL+SLCR+LANVLCLV PLKGV*PY+ISYRRIPSAHQSTALVWPAPVIISGAMYSSVPT
Sbjct: 326 NLMSLCRMLANVLCLVLPLKGV*PYSISYRRIPSAHQSTALVWPAPVIISGAMYSSVPTN 147
Query: 2720 EFDARIGSAKNMG 2682
E DARIGSAKNMG
Sbjct: 146 ELDARIGSAKNMG 108
Score = 173 bits (372), Expect(2) = 2e-044
Identities = 84/143 (58%), Positives = 96/143 (67%)
Frame = -1 / -2
Query: 3078 SLQLWGRGGTN*SPVYATKEGVLFDLHSALIGT*PICRVSV*QPVYQLPCRQAHLYARRK 2899
S+QL + SPV A +E VLF L LI + I + V QPV QLP +AH Y +
Sbjct: 504 SVQLRRSRAAHKSPVDAAEERVLFYLVRPLIRSHSIRGIPVQQPVDQLPSWEAHRYTCGE 325
Query: 2898 SDILVQNISKCPLSCFPSEGCITI*HLI*KNS*RPPIYSTRMASSGNNLRCNVLLCTNKR 2719
SD+LV ++ KCPL F SEGC+TI H I KN *RPPI ST MASSGNNLRCNVL CTNK
Sbjct: 324 SDVLV*DVGKCPLPGFTSEGCVTIQHFIQKNP*RPPINSTCMASSGNNLRCNVLFCTNK* 145
Query: 2718 I*CSHWFSKKYGITPALPPLFLL 2650
I CSH F KKYG TPA PP FL+
Sbjct: 144 IGCSHRFRKKYG*TPAFPPTFLI 76
Score = 173 bits (372), Expect(2) = 1e-043
Identities = 73/133 (54%), Positives = 95/133 (71%)
Frame = +3 / +3
Query: 2682 SHIFC*TNASIKFFCWYRGVHCTGDYYRSWPYECCRLVGARNSSI*DVIWLYTLQRENKT 2861
+HIFC T+ASI+F CWYR VHCT DYYRSWPY+CC LVGAR+SS+*+ +WL+TLQR N+
Sbjct: 108 THIFCGTDASIQFICWYRRVHCT*DYYRSWPYKCC*LVGARDSSV*NAVWLHTLQR*NQA 287
Query: 2862 KDIC*YSAQGYQISCEHTGEPGGKAADIPVATPRPCK*ARFL*GRYGDQTTPLLSWHKLG 3041
KDIC + QG+QI ++ GEP AAD+ VA +* +*G D+TTP+L H+LG
Sbjct: 288 KDICQHPTQGHQIPRKYIGEPPS*AADLQVAAQGSRE*NGIV*GVERDKTTPVLPRHQLG 467
Query: 3042 SSSCRHAPRAGGS 3080
S + + AG S
Sbjct: 468 SCARHGSSEAGRS 506
Score = 161 bits (346), Expect = 2e-038
Identities = 84/142 (59%), Positives = 93/142 (65%)
Frame = +2 / +2
Query: 2654 RKRGGRAGVIPYFLLNQCEHQILLLVQRSTLHRRLLPELAIRVL*IGGR*EFFYMRCYMV 2833
RK GG+AGV PYFL N+CEH I LLVQ+STLH RLLPELAI+VL IGGR* FF M+C MV
Sbjct: 80 RKVGGKAGVHPYFLRNRCEHPIHLLVQKSTLHLRLLPELAIQVLLIGGR*GFFCMKCCMV 259
Query: 2834 IHPSEGKQDKGHLLIFCTRISDFLRAYR*AWRQGS*YTGCYTETLQIG*VPMRALWRSNN 3013
HPSE K KGHL TR SD + YR*A + GS* TGC T +I MR R NN
Sbjct: 260 THPSEVKPGKGHLPTSYTRTSDSPQVYR*ASQLGS*STGCCTGIPRIEWDRMRGRTR*NN 439
Query: 3014 TPSFVA*TGL*FVPPRPQSWRL 3079
T S A TGL +SW L
Sbjct: 440 TRSSAASTGLLCAARLLRSWTL 505
Score = 129 bits (277), Expect = 7e-029
Identities = 70/120 (58%), Positives = 73/120 (60%)
Frame = -3 / -1
Query: 3043 EPSLCHERRGVV*SP*RPHRNLAYLQGLGVATGISAALPPGSPVCSQEI*YPCAEY*QMS 2864
EPS C R GVV S PH Y + AT SAA GSP+ + I* PC QMS
Sbjct: 469 EPS*CRGRTGVVLSRSTPHTIPFYSRDPCAATCRSAA*LGGSPIYLRGI*CPCVGCWQMS 290
Query: 2863 FVLFSL*RVYNHITSHIEEFLAPTNLQHSYGQLR**SPVQCTPLYQQKNLMLALVQQKIW 2684
F F L*RV NH H EE LAPTN QH YGQLR**S VQCT LYQQ N MLA V QKIW
Sbjct: 289 FAWFYL*RVCNHTAFHTEESLAPTNQQHLYGQLR**SQVQCTLLYQQMNWMLASVPQKIW 110
Score = 35.9 bits (72), Expect(2) = 7e-087
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +1 / +1
Query: 2599 SCLTSCRPQVFLPHD 2643
+CLTSCRPQVFLP +
Sbjct: 28 ACLTSCRPQVFLPEE 72
Score = 28.6 bits (56), Expect(2) = 2e-068
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -2 / -3
Query: 2642 SCGRNTCGRQDVKQDKSK 2589
S GR TCG QDV+Q + K
Sbjct: 71 SSGRKTCGLQDVRQAQIK 18
Score = 28.1 bits (55), Expect(2) = 2e-044
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -1 / -2
Query: 2664 PLFLLINIVWKKHLWSAGCQA 2602
P LI+ WKK L SA CQA
Sbjct: 93 PPTFLISFFWKKDLRSARCQA 31
Score = 25.8 bits (50), Expect(2) = 1e-043
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +2 / +2
Query: 2600 LA*HPADHKCFFHTILIRRKRG 2665
LA*H AD + FF LIR+ G
Sbjct: 29 LA*HLADRRSFFQKKLIRKVGG 94
>gb|BE421430.1|BE421430 HWM009.C03 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM009.C03, mRNA sequence
Length = 832
Score = 307 bits (665), Expect = 2e-082
Identities = 124/135 (91%), Positives = 129/135 (95%)
Frame = +1 / +2
Query: 2680 NPIFFAEPMRASNSFVGTEEYIAPEIITGAGHTSAVDWWALGILLYEMLYGYTPFRGKTR 2859
+PIFFAEPMRASNSFVGTEEYIAPEIITGAGHTSAVDWWALGILLYEMLYGYTPFRGKTR
Sbjct: 167 SPIFFAEPMRASNSFVGTEEYIAPEIITGAGHTSAVDWWALGILLYEMLYGYTPFRGKTR 346
Query: 2860 QRTFANILHKDIRFPASIQVSLAARQLIYRLLHRDPANRLGSYEGAMEIKQHPFFRGINW 3039
QRTFANILHKDIRFPASI VSL ARQLIYRLLHRDPANR+GSYEG+ EIKQHPFFRGINW
Sbjct: 347 QRTFANILHKDIRFPASISVSLPARQLIYRLLHRDPANRMGSYEGSNEIKQHPFFRGINW 526
Query: 3040 ALVRAATPPELEAPL 3084
ALVR PP+L+APL
Sbjct: 527 ALVRGTAPPKLDAPL 571
Score = 253 bits (547), Expect(2) = 2e-067
Identities = 109/133 (81%), Positives = 114/133 (85%)
Frame = -2 / -2
Query: 3080 GASSSGGVAARTRAQFMPRKKGCCLISIAPS*EPSLFAGSRCSNRYISCLAARLTCMLAG 2901
GASS GG RTRAQ MPRK GCC IS PS +P LFAGS CSN ISCLA RLT +LAG
Sbjct: 567 GASSFGGAVPRTRAQLMPRKNGCCFISFDPSYDPILFAGSLCSNL*ISCLAGRLTDILAG 388
Query: 2900 NLISLCRILANVLCLVFPLKGV*PYNISYRRIPSAHQSTALVWPAPVIISGAMYSSVPTK 2721
NL+SLCR+LANVLCLV PLKGV*PY+ISYRRIPSAHQSTALVWPAPVIISGAMYSSVPT
Sbjct: 387 NLMSLCRMLANVLCLVLPLKGV*PYSISYRRIPSAHQSTALVWPAPVIISGAMYSSVPTN 208
Query: 2720 EFDARIGSAKNMG 2682
E DARIGSAKNMG
Sbjct: 207 ELDARIGSAKNMG 169
Score = 173 bits (372), Expect = 6e-042
Identities = 84/143 (58%), Positives = 96/143 (67%)
Frame = -1 / -1
Query: 3078 SLQLWGRGGTN*SPVYATKEGVLFDLHSALIGT*PICRVSV*QPVYQLPCRQAHLYARRK 2899
S+QL + SPV A +E VLF L LI + I + V QPV QLP +AH Y +
Sbjct: 565 SVQLRRSRAAHKSPVDAAEERVLFYLVRPLIRSHSIRGIPVQQPVDQLPSWEAHRYTCGE 386
Query: 2898 SDILVQNISKCPLSCFPSEGCITI*HLI*KNS*RPPIYSTRMASSGNNLRCNVLLCTNKR 2719
SD+LV ++ KCPL F SEGC+TI H I KN *RPPI ST MASSGNNLRCNVL CTNK
Sbjct: 385 SDVLV*DVGKCPLPGFTSEGCVTIQHFIQKNP*RPPINSTCMASSGNNLRCNVLFCTNK* 206
Query: 2718 I*CSHWFSKKYGITPALPPLFLL 2650
I CSH F KKYG TPA PP FL+
Sbjct: 205 IGCSHRFRKKYG*TPAFPPTFLI 137
Score = 173 bits (372), Expect = 6e-042
Identities = 73/133 (54%), Positives = 95/133 (71%)
Frame = +3 / +1
Query: 2682 SHIFC*TNASIKFFCWYRGVHCTGDYYRSWPYECCRLVGARNSSI*DVIWLYTLQRENKT 2861
+HIFC T+ASI+F CWYR VHCT DYYRSWPY+CC LVGAR+SS+*+ +WL+TLQR N+
Sbjct: 169 THIFCGTDASIQFICWYRRVHCT*DYYRSWPYKCC*LVGARDSSV*NAVWLHTLQR*NQA 348
Query: 2862 KDIC*YSAQGYQISCEHTGEPGGKAADIPVATPRPCK*ARFL*GRYGDQTTPLLSWHKLG 3041
KDIC + QG+QI ++ GEP AAD+ VA +* +*G D+TTP+L H+LG
Sbjct: 349 KDICQHPTQGHQIPRKYIGEPPS*AADLQVAAQGSRE*NGIV*GVERDKTTPVLPRHQLG 528
Query: 3042 SSSCRHAPRAGGS 3080
S + + AG S
Sbjct: 529 SCARHGSSEAGRS 567
Score = 161 bits (346), Expect = 2e-038
Identities = 84/142 (59%), Positives = 93/142 (65%)
Frame = +2 / +3
Query: 2654 RKRGGRAGVIPYFLLNQCEHQILLLVQRSTLHRRLLPELAIRVL*IGGR*EFFYMRCYMV 2833
RK GG+AGV PYFL N+CEH I LLVQ+STLH RLLPELAI+VL IGGR* FF M+C MV
Sbjct: 141 RKVGGKAGVHPYFLRNRCEHPIHLLVQKSTLHLRLLPELAIQVLLIGGR*GFFCMKCCMV 320
Query: 2834 IHPSEGKQDKGHLLIFCTRISDFLRAYR*AWRQGS*YTGCYTETLQIG*VPMRALWRSNN 3013
HPSE K KGHL TR SD + YR*A + GS* TGC T +I MR R NN
Sbjct: 321 THPSEVKPGKGHLPTSYTRTSDSPQVYR*ASQLGS*STGCCTGIPRIEWDRMRGRTR*NN 500
Query: 3014 TPSFVA*TGL*FVPPRPQSWRL 3079
T S A TGL +SW L
Sbjct: 501 TRSSAASTGLLCAARLLRSWTL 566
Score = 129 bits (277), Expect = 7e-029
Identities = 70/120 (58%), Positives = 73/120 (60%)
Frame = -3 / -3
Query: 3043 EPSLCHERRGVV*SP*RPHRNLAYLQGLGVATGISAALPPGSPVCSQEI*YPCAEY*QMS 2864
EPS C R GVV S PH Y + AT SAA GSP+ + I* PC QMS
Sbjct: 530 EPS*CRGRTGVVLSRSTPHTIPFYSRDPCAATCRSAA*LGGSPIYLRGI*CPCVGCWQMS 351
Query: 2863 FVLFSL*RVYNHITSHIEEFLAPTNLQHSYGQLR**SPVQCTPLYQQKNLMLALVQQKIW 2684
F F L*RV NH H EE LAPTN QH YGQLR**S VQCT LYQQ N MLA V QKIW
Sbjct: 350 FAWFYL*RVCNHTAFHTEESLAPTNQQHLYGQLR**SQVQCTLLYQQMNWMLASVPQKIW 171
Score = 25.4 bits (49), Expect(2) = 2e-067
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -1 / -1
Query: 2664 PLFLLINIVWKKHLWSAGCQ 2605
P LI+ WKK L SA C+
Sbjct: 154 PPTFLISFFWKKDLRSASCR 95
>gb|BJ472879.1|BJ472879 BJ472879 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal39h24 5', mRNA sequence
Length = 452
Score = 264 bits (570), Expect = 3e-069
Identities = 107/141 (75%), Positives = 118/141 (83%)
Frame = +1 / +3
Query: 2206 LVELLGTGEYFAMKAMDKSVMLNRNKVHRATAERQILDMLDHPFLPTLYASFQTKTHICL 2385
LVEL G+GE FAMKAMDKSVMLNRNKVHRA ER+I +LDHPFLPTLY SFQT TH+CL
Sbjct: 27 LVELQGSGELFAMKAMDKSVMLNRNKVHRAIIEREIYSLLDHPFLPTLYTSFQTPTHVCL 206
Query: 2386 IVDYCAGGELFMLLDRQPMKVLKEDAVRFYAAEVVTALEYLHCQGIIYRDLKPENILLHR 2565
I D+C GGELF LD+QP+K+ +ED+ RFYAAEVV LEYLHC GIIYRDLKPENILL
Sbjct: 207 ITDFCPGGELFAALDKQPLKIFREDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQA 386
Query: 2566 DGHISLTDFDLSCLTSCRPQV 2628
DGHI LTDFDLS LTS +P V
Sbjct: 387 DGHIVLTDFDLSFLTSSKPHV 449
Score = 148 bits (318), Expect = 2e-034
Identities = 73/141 (51%), Positives = 87/141 (61%)
Frame = -2 / -2
Query: 2627 TCGRQDVKQDKSKSVNEMCPSL*SKMFSGFKSL*IIPWQCRYXXXXXXXXXXXXXXXSFR 2448
T G +DVK ++SKSV+ MCPS SKMFSGFKS I+P Q RY S +
Sbjct: 448 TWGFEDVKNERSKSVSTMCPSAWSKMFSGFKSRYIMPRQ*RYSRPITTSAA*NLAESSLK 269
Query: 2447 TFIGCLSRSIKSSPPAQ*STIRHICVFV*NDAYNVGRNGWSNISRICRSAVALWTLFRLS 2268
F GCLS + +SPP Q S IR CV V*N+ YNVGR G SN I S +A TL R +
Sbjct: 268 IFKGCLSSAANNSPPGQKSVIRQTCVGV*NEVYNVGRKG*SNSEYISLSIIARCTLLRFN 89
Query: 2267 MTLLSIAFMAKYSPVPSNSTK 2205
+T LSIAF+A SP+P NSTK
Sbjct: 88 ITDLSIAFIANNSPLPCNSTK 26
Score = 111 bits (236), Expect = 3e-023
Identities = 57/136 (41%), Positives = 79/136 (58%)
Frame = -1 / -1
Query: 2610 CQARQIKVCQ*NVPISMK*NVLWL*VSVDYTLAM*VFKCCDHFCSIEPDRILLQNLHRLP 2431
CQ ++K+ Q NVPI ++ NV W ++V M + + + SI+P RI +N L
Sbjct: 431 CQK*EVKISQHNVPIGLEQNVFWFQITVYNAKTMKILETNYNLRSIKPCRIFSENFQGLF 252
Query: 2430 IKEHKEFPTSTIVNNKTYMCLCLK*CIQCRKEWVVQHIKDLSFSGSSMDLVSVKHDTFIH 2251
IK K+F + T V KT MC LK* IQC K+ ++Q SF+ SSM LV+V+H F+H
Sbjct: 251 IKRRKQFSSGTKVCYKTNMCRGLK*SIQCWKKRMIQ*RVYFSFNNSSMHLVAVQHH*FVH 72
Query: 2250 SFHGKVFTCAKQLHQV 2203
H K FT QL+QV
Sbjct: 71 CLHRK*FTTTLQLNQV 24
>gb|AV832759.1|AV832759 AV832759 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare top three leaves adult, heading stage Hordeum
vulgare subsp. vulgare cDNA clone baal1k18, mRNA sequence
Length = 571
Score = 216 bits (467), Expect(3) = 3e-068
Identities = 89/131 (67%), Positives = 104/131 (79%)
Frame = +1 / +1
Query: 1933 RVREAAAKDGAILVKKTADNIDEAAKELPDANLRPEDLWANHSKPVLPKPHMKDTASWRA 2112
R+ E A LVK TA N+DEA +ELPDANLRPEDLWA HS V PKPH ++ +SW+A
Sbjct: 178 RLSENTEIQSAKLVKATAGNVDEAVRELPDANLRPEDLWAVHSLSVSPKPHKRNNSSWKA 357
Query: 2113 IQKVLENGESIDLKHFRPVRPLGSGDTGSVHLVELLGTGEYFAMKAMDKSVMLNRNKVHR 2292
I+K++E GE I LKHF+PV+PLG GDTGSVHLVEL G+GE FAMKAMDKSVMLNRNKVHR
Sbjct: 358 IEKIMETGEKIGLKHFKPVKPLGCGDTGSVHLVELQGSGELFAMKAMDKSVMLNRNKVHR 537
Query: 2293 ATAERQILDML 2325
A ER+I +L
Sbjct: 538 AIIEREIYSLL 570
Score = 109 bits (232), Expect(3) = 4e-029
Identities = 55/131 (41%), Positives = 70/131 (53%)
Frame = -2 / -3
Query: 2324 NISRICRSAVALWTLFRLSMTLLSIAFMAKYSPVPSNSTKWTLPVSPDPKGLTGLKCFKS 2145
N I S +A TL R ++T LSIAF+A SP+P NSTK TLPVSP P+G TGLKCFK
Sbjct: 569 NSEYISLSIIARCTLLRFNITDLSIAFIANNSPLPCNSTKCTLPVSPHPRGFTGLKCFKP 390
Query: 2144 MLSPFSRTFWMALHDAVSFICGFGKTGFE*LAHRXXXXXXXXXXXXXXXXXXXXXXLTSM 1965
+ SP S F +A + + + GFG+T E AHR LTS+
Sbjct: 389 IFSPVSIIFSIAFQEELFRL*GFGETDSECTAHRSSGLKLASGSSLTASSTFPAVALTSL 210
Query: 1964 APSFAAASRTR 1932
A + S +R
Sbjct: 209 ALCISVFSESR 177
Score = 104 bits (222), Expect(2) = 8e-025
Identities = 53/126 (42%), Positives = 72/126 (57%)
Frame = -1 / -2
Query: 2307 SFSGSSMDLVSVKHDTFIHSFHGKVFTCAKQLHQVDTASITRS*RPYWSEMFQINAFTVL 2128
SF+ SSM LV+V+H F+H H K FT QL+QV TAS+ *R YW E+FQ N
Sbjct: 552 SFNNSSMHLVAVQHH*FVHCLHRK*FTTTLQLNQVYTASVPTP*RLYWLEVFQANLLPGF 373
Query: 2127 KNLLDGSPRCSILHMWLWQDWF*VISP*ILRSQISIRKLLCSLINIVCSFLNQYGTIFCS 1948
NL PR I + W++ *V P +L SQ+ IRKL I+I C +Q+GT++
Sbjct: 372 HNLFYSFPRRVIPFVRFWRNR**VHRPQVLWSQVGIRKLPDCFIHIPCCSFDQFGTLYLG 193
Query: 1947 SLSNTL 1930
L ++
Sbjct: 192 VLRESV 175
Score = 46.4 bits (95), Expect(3) = 3e-068
Identities = 17/19 (89%), Positives = 17/19 (89%)
Frame = +1 / +3
Query: 1834 SGKKFWNLFHLQPMRDQKG 1890
SGKKFWNLFHLQPM DQ G
Sbjct: 57 SGKKFWNLFHLQPMWDQXG 113
Score = 36.8 bits (74), Expect(3) = 3e-068
Identities = 13/18 (72%), Positives = 17/18 (94%)
Frame = +1 / +1
Query: 1885 KGDVQYFIGVQLDGTERV 1938
KG++QYFIGVQLDG++ V
Sbjct: 109 KGELQYFIGVQLDGSDHV 162
Score = 32.2 bits (64), Expect(3) = 4e-029
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -2 / -1
Query: 1889 PF*SRIGCK*KRFQNFLPL 1833
P S IGC+* +FQNF PL
Sbjct: 112 PXWSHIGCR*NKFQNFFPL 56
Score = 31.3 bits (62), Expect(2) = 8e-025
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = -1 / -3
Query: 1884 LITHRLQVKEVPEFLTA 1834
L+ HRLQVK+VPE L A
Sbjct: 107 LVPHRLQVKQVPELLPA 57
Score = 26.7 bits (52), Expect(3) = 4e-029
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = -2 / -3
Query: 1937 TRSVPSN*TPMKY*TSP 1887
T S+PS+ TP+KY*+SP
Sbjct: 161 T*SLPSSCTPIKY*SSP 111
>gb|BJ544669.1|BJ544669 BJ544669 K. Sato unpublished cDNA library, cv. Akashinriki vegetative
stage leaves Hordeum vulgare subsp. vulgare cDNA clone
baak34b18 5', mRNA sequence
Length = 639
Score = 230 bits (497), Expect = 3e-059
Identities = 94/146 (64%), Positives = 114/146 (78%)
Frame = +1 / +3
Query: 2713 SNSFVGTEEYIAPEIITGAGHTSAVDWWALGILLYEMLYGYTPFRGKTRQRTFANILHKD 2892
SNSFVGTEEYIAPE+ITGAGHTSA+DWWALGILLYEMLYG TPFRGK R++TF NILHKD
Sbjct: 27 SNSFVGTEEYIAPEVITGAGHTSAIDWWALGILLYEMLYGRTPFRGKNRKKTFYNILHKD 206
Query: 2893 IRFPASIQVSLAARQLIYRLLHRDPANRLGSYEGAMEIKQHPFFRGINWALVRAATPPEL 3072
+ FP+SI VSL A+QLI+ LL RDP++R+GS GA +IK+HPFF I W L+R +PPEL
Sbjct: 207 LTFPSSIPVSLEAKQLIHGLLQRDPSSRIGSNTGANDIKEHPFFEDIYWPLIRCMSPPEL 386
Query: 3073 EAPLQDTLEATLPPPAADAAHTDMF* 3150
+ PL+ + + P + D F*
Sbjct: 387 DVPLKLIGKESQPKVKPEEGVIDTF* 464
Score = 166 bits (358), Expect = 5e-040
Identities = 78/125 (62%), Positives = 87/125 (69%)
Frame = -2 / -3
Query: 3086 WRGASSSGGVAARTRAQFMPRKKGCCLISIAPS*EPSLFAGSRCSNRYISCLAARLTCML 2907
+ G SSSGG+ R Q M K GC LIS AP EP GS S+ +ISC A+RLT ML
Sbjct: 400 FNGTSSSGGLMQRISGQ*MSSKNGCSLISFAPVFEPMREEGSL*SSPWISCFASRLTGML 221
Query: 2906 AGNLISLCRILANVLCLVFPLKGV*PYNISYRRIPSAHQSTALVWPAPVIISGAMYSSVP 2727
GN+ SLCR+L NV L FP KGV PY+ISY RIP AHQS ALV PAPV+ SGAMYSSVP
Sbjct: 220 LGNVRSLCRML*NVFFLFFPRKGVRPYSISYNRIPRAHQSMALVCPAPVMTSGAMYSSVP 41
Query: 2726 TKEFD 2712
T EFD
Sbjct: 40 TNEFD 26
>gb|CK125346.1|CK125346 BES1824107m01 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010M017 5-PRIME, mRNA sequence
Length = 884
Score = 230 bits (497), Expect = 3e-059
Identities = 93/184 (50%), Positives = 126/184 (68%)
Frame = +1 / +1
Query: 2077 KPHMKDTASWRAIQKVLENGESIDLKHFRPVRPLGSGDTGSVHLVELLGTGEYFAMKAMD 2256
+PHM W A++++ S+ LK+F+ ++ LG GD G+V+L EL+G+ FA+K MD
Sbjct: 166 RPHMSKDVRWEAMRRIAIQQGSLGLKNFKLLKQLGCGDIGTVYLAELVGSDCMFALKVMD 345
Query: 2257 KSVMLNRNKVHRATAERQILDMLDHPFLPTLYASFQTKTHICLIVDYCAGGELFMLLDRQ 2436
+++R K+ RA ER+IL MLDHPFLPTLY+ F T CL+++YC GG+L +L +Q
Sbjct: 346 IEYLISRKKMLRAQTEREILQMLDHPFLPTLYSYFTTDNLSCLVMEYCPGGDLHVLRQKQ 525
Query: 2437 PMKVLKEDAVRFYAAEVVTALEYLHCQGIIYRDLKPENILLHRDGHISLTDFDLSCLTSC 2616
P + E A RFY AEV+ ALEYLH G+IYRDLKPENIL+ DGHI L+DFDLS S
Sbjct: 526 PTRCFSEAAARFYVAEVLLALEYLHMLGVIYRDLKPENILVREDGHIMLSDFDLSLRCSV 705
Query: 2617 RPQV 2628
P +
Sbjct: 706 NPML 717
Score = 116 bits (248), Expect = 7e-025
Identities = 65/167 (38%), Positives = 80/167 (47%)
Frame = -2 / -1
Query: 2603 QDKSKSVNEMCPSL*SKMFSGFKSL*IIPWQCRYXXXXXXXXXXXXXXXSFRTFIGCLSR 2424
+D+SKS + MCPS + MFSGF+S I P CRY S + +GC
Sbjct: 692 RDRSKSESMMCPSSRTSMFSGFRSRYITPNICRYSNARRTSAT*NLAAASEKHLVGCFCL 513
Query: 2423 SIKSSPPAQ*STIRHICVFV*NDAYNVGRNGWSNISRICRSAVALWTLFRLSMTLLSIAF 2244
SPP Q S R + V Y VGRNGWS+I I S AL FRL +SI F
Sbjct: 512 RTCRSPPGQYSITRQDRLSVVK*EYRVGRNGWSSICSISLSV*ALSIFFRLIRYSMSITF 333
Query: 2243 MAKYSPVPSNSTKWTLPVSPDPKGLTGLKCFKSMLSPFSRTFWMALH 2103
A P+NS + T+P+SP P L LK F L + MA H
Sbjct: 332 SANMQSEPTNSAR*TVPISPHPSCLRSLKFFNPRLPCWIAMRLMASH 192
>gb|BU987426.1|BU987426 HF14L16r HF Hordeum vulgare subsp. vulgare cDNA clone HF14L16
5-PRIME, mRNA sequence
Length = 539
Score = 227 bits (490), Expect = 3e-058
Identities = 91/175 (52%), Positives = 123/175 (70%)
Frame = +1 / +1
Query: 2077 KPHMKDTASWRAIQKVLENGESIDLKHFRPVRPLGSGDTGSVHLVELLGTGEYFAMKAMD 2256
+PHM W A++++ S+ LK+F+ ++ LG GD G+V+L EL+G+ FA+K MD
Sbjct: 13 RPHMSKDVRWEAMRRIAIQQGSLGLKNFKLLKQLGCGDIGTVYLAELVGSDCMFALKVMD 192
Query: 2257 KSVMLNRNKVHRATAERQILDMLDHPFLPTLYASFQTKTHICLIVDYCAGGELFMLLDRQ 2436
+++R K+ RA ER+IL MLDHPFLPTLY+ F T CL+++YC GG+L +L +Q
Sbjct: 193 IEYLISRKKMLRAQTEREILQMLDHPFLPTLYSYFTTDNLSCLVMEYCPGGDLHVLRQKQ 372
Query: 2437 PMKVLKEDAVRFYAAEVVTALEYLHCQGIIYRDLKPENILLHRDGHISLTDFDLS 2601
P + E A RFY AEV+ ALEYLH G+IYRDLKPENIL+ DGHI L+DFDLS
Sbjct: 373 PTRCFSEAAARFYVAEVLLALEYLHMLGVIYRDLKPENILVREDGHIMLSDFDLS 537
Score = 116 bits (248), Expect = 7e-025
Identities = 65/167 (38%), Positives = 80/167 (47%)
Frame = -2 / -1
Query: 2603 QDKSKSVNEMCPSL*SKMFSGFKSL*IIPWQCRYXXXXXXXXXXXXXXXSFRTFIGCLSR 2424
+D+SKS + MCPS + MFSGF+S I P CRY S + +GC
Sbjct: 539 RDRSKSESMMCPSSRTSMFSGFRSRYITPNICRYSNARRTSAT*NLAAASEKHLVGCFCL 360
Query: 2423 SIKSSPPAQ*STIRHICVFV*NDAYNVGRNGWSNISRICRSAVALWTLFRLSMTLLSIAF 2244
SPP Q S R + V Y VGRNGWS+I I S AL FRL +SI F
Sbjct: 359 RTCRSPPGQYSITRQDRLSVVK*EYRVGRNGWSSICSISLSV*ALSIFFRLIRYSMSITF 180
Query: 2243 MAKYSPVPSNSTKWTLPVSPDPKGLTGLKCFKSMLSPFSRTFWMALH 2103
A P+NS + T+P+SP P L LK F L + MA H
Sbjct: 179 SANMQSEPTNSAR*TVPISPHPSCLRSLKFFNPRLPCWIAMRLMASH 39
>gb|AV919193.1|AV919193 AV919193 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags4o22 3', mRNA sequence
Length = 586
Score = 225 bits (485), Expect = 1e-057
Identities = 89/99 (89%), Positives = 93/99 (93%)
Frame = +1 / -3
Query: 2788 DWWALGILLYEMLYGYTPFRGKTRQRTFANILHKDIRFPASIQVSLAARQLIYRLLHRDP 2967
DWWALGILLYEMLYGYTPFRGKTRQRTFANILHKDIRFPASI VSL ARQLIYRLLHRDP
Sbjct: 584 DWWALGILLYEMLYGYTPFRGKTRQRTFANILHKDIRFPASISVSLPARQLIYRLLHRDP 405
Query: 2968 ANRLGSYEGAMEIKQHPFFRGINWALVRAATPPELEAPL 3084
ANR+GSYEG+ EIKQHPFFRGINWALVR PP+L+APL
Sbjct: 404 ANRMGSYEGSNEIKQHPFFRGINWALVRGTAPPKLDAPL 288
Score = 176 bits (379), Expect = 6e-043
Identities = 76/98 (77%), Positives = 81/98 (82%)
Frame = -2 / +1
Query: 3080 GASSSGGVAARTRAQFMPRKKGCCLISIAPS*EPSLFAGSRCSNRYISCLAARLTCMLAG 2901
GASS GG RTRAQ MPRK GCC IS PS +P LFAGS CSN ISCLA RLT +LAG
Sbjct: 292 GASSFGGAVPRTRAQLMPRKNGCCFISFDPSYDPILFAGSLCSNL*ISCLAGRLTDILAG 471
Query: 2900 NLISLCRILANVLCLVFPLKGV*PYNISYRRIPSAHQS 2787
NL+SLCR+LANVLCLV PLKGV*PY+ISYRRIPSAHQS
Sbjct: 472 NLMSLCRMLANVLCLVLPLKGV*PYSISYRRIPSAHQS 585
>gb|AV833557.1|AV833557 AV833557 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare shoots germination Hordeum vulgare subsp. vulgare
cDNA clone bags15d19, mRNA sequence
Length = 552
Score = 218 bits (471), Expect = 1e-055
Identities = 88/166 (53%), Positives = 119/166 (71%)
Frame = +1 / +2
Query: 2104 WRAIQKVLENGESIDLKHFRPVRPLGSGDTGSVHLVELLGTGEYFAMKAMDKSVMLNRNK 2283
W A++++ S+ LK+F+ ++ LG GD G+V+L EL+G+ FA+K MD +++R K
Sbjct: 53 WEAMRRIAIQQGSLGLKNFKLLKQLGCGDIGTVYLAELVGSDCMFALKVMDIEYLISRKK 232
Query: 2284 VHRATAERQILDMLDHPFLPTLYASFQTKTHICLIVDYCAGGELFMLLDRQPMKVLKEDA 2463
+ RA ER+IL MLDHPFLPTLY+ F T CL+++YC GG+L +L +QP + E A
Sbjct: 233 MLRAQTEREILQMLDHPFLPTLYSYFTTDNLSCLVMEYCPGGDLHVLRQKQPTRCFSEAA 412
Query: 2464 VRFYAAEVVTALEYLHCQGIIYRDLKPENILLHRDGHISLTDFDLS 2601
RFY AEV+ ALEYLH G+IYRDLKPENIL+ DGHI L+DFDLS
Sbjct: 413 ARFYVAEVLLALEYLHMLGVIYRDLKPENILVREDGHIMLSDFDLS 550
Score = 116 bits (248), Expect = 7e-025
Identities = 65/167 (38%), Positives = 80/167 (47%)
Frame = -2 / -1
Query: 2603 QDKSKSVNEMCPSL*SKMFSGFKSL*IIPWQCRYXXXXXXXXXXXXXXXSFRTFIGCLSR 2424
+D+SKS + MCPS + MFSGF+S I P CRY S + +GC
Sbjct: 552 RDRSKSESMMCPSSRTSMFSGFRSRYITPNICRYSNARRTSAT*NLAAASEKHLVGCFCL 373
Query: 2423 SIKSSPPAQ*STIRHICVFV*NDAYNVGRNGWSNISRICRSAVALWTLFRLSMTLLSIAF 2244
SPP Q S R + V Y VGRNGWS+I I S AL FRL +SI F
Sbjct: 372 RTCRSPPGQYSITRQDRLSVVK*EYRVGRNGWSSICSISLSV*ALSIFFRLIRYSMSITF 193
Query: 2243 MAKYSPVPSNSTKWTLPVSPDPKGLTGLKCFKSMLSPFSRTFWMALH 2103
A P+NS + T+P+SP P L LK F L + MA H
Sbjct: 192 SANMQSEPTNSAR*TVPISPHPSCLRSLKFFNPRLPCWIAMRLMASH 52
>gb|CA030098.1|CA030098 HX06B10r HX Hordeum vulgare subsp. vulgare cDNA clone HX06B10
5-PRIME, mRNA sequence
Length = 639
Score = 212 bits (457), Expect = 1e-053
Identities = 87/160 (54%), Positives = 111/160 (69%)
Frame = +1 / +2
Query: 2143 IDLKHFRPVRPLGSGDTGSVHLVELLGTGEYFAMKAMDKSVMLNRNKVHRATAERQILDM 2322
+ L HF+ ++ LG GD GSV+L EL GT YFAMK MDK+ + R K+ RA E++IL
Sbjct: 35 LGLSHFKLLKKLGCGDIGSVYLSELTGTKSYFAMKVMDKASLTGRKKLLRAQTEKEILQC 214
Query: 2323 LDHPFLPTLYASFQTKTHICLIVDYCAGGELFMLLDRQPMKVLKEDAVRFYAAEVVTALE 2502
LDHPFLPTLY F+T CL++++C GG+L L +Q K E AV+FY AE++ A+E
Sbjct: 215 LDHPFLPTLYTHFETDKFSCLVMEFCPGGDLHTLRQKQRGKYFPEQAVKFYVAEILLAME 394
Query: 2503 YLHCQGIIYRDLKPENILLHRDGHISLTDFDLSCLTSCRP 2622
YLH GIIYRDLKPENIL+ DGHI L+DFDLS + P
Sbjct: 395 YLHMLGIIYRDLKPENILVRDDGHIMLSDFDLSLRCTVSP 514
>gb|BJ546140.1|BJ546140 BJ546140 K. Sato unpublished cDNA library, cv. Akashinriki vegetative
stage leaves Hordeum vulgare subsp. vulgare cDNA clone
baak34b18 3', mRNA sequence
Length = 719
Score = 212 bits (457), Expect = 1e-053
Identities = 86/138 (62%), Positives = 106/138 (76%)
Frame = +1 / -3
Query: 2737 EYIAPEIITGAGHTSAVDWWALGILLYEMLYGYTPFRGKTRQRTFANILHKDIRFPASIQ 2916
EYIAPE+ITGAGHTSA+DWWALGILLYEMLYG TPFRGK R++TF NILHKD+ FP+SI
Sbjct: 717 EYIAPEVITGAGHTSAIDWWALGILLYEMLYGRTPFRGKNRKKTFYNILHKDLTFPSSIP 538
Query: 2917 VSLAARQLIYRLLHRDPANRLGSYEGAMEIKQHPFFRGINWALVRAATPPELEAPLQDTL 3096
VSL A+QLI+ LL RDP++R+GS GA +IK+HPFF I W L+R +PPEL+ PL+
Sbjct: 537 VSLEAKQLIHGLLQRDPSSRIGSNTGANDIKEHPFFEDIYWPLIRCMSPPELDVPLKLIG 358
Query: 3097 EATLPPPAADAAHTDMF* 3150
+ + P + D F*
Sbjct: 357 KESQPKVKPEEGVIDTF* 304
Score = 149 bits (321), Expect = 6e-035
Identities = 71/117 (60%), Positives = 80/117 (68%)
Frame = -2 / +2
Query: 3086 WRGASSSGGVAARTRAQFMPRKKGCCLISIAPS*EPSLFAGSRCSNRYISCLAARLTCML 2907
+ G SSSGG+ R Q M K GC LIS AP EP GS S+ +ISC A+RLT ML
Sbjct: 368 FNGTSSSGGLMQRISGQ*MSSKNGCSLISFAPVFEPMREEGSL*SSPWISCFASRLTGML 547
Query: 2906 AGNLISLCRILANVLCLVFPLKGV*PYNISYRRIPSAHQSTALVWPAPVIISGAMYS 2736
GN+ SLCR+L NV L FP KGV PY+ISY RIP AHQS ALV PAPV+ SGAMYS
Sbjct: 548 LGNVRSLCRML*NVFFLFFPRKGVRPYSISYNRIPRAHQSMALVCPAPVMTSGAMYS 718
>gb|BJ546986.1|BJ546986 BJ546986 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal23p17 5', mRNA sequence
Length = 624
Score = 197 bits (425), Expect = 3e-049
Identities = 80/132 (60%), Positives = 100/132 (75%)
Frame = +1 / +2
Query: 2755 IITGAGHTSAVDWWALGILLYEMLYGYTPFRGKTRQRTFANILHKDIRFPASIQVSLAAR 2934
+ITGAGHTSA+DWWALGILLYEMLYG TPFRGK R++TF NILHKD+ FP+SI VSL A+
Sbjct: 29 VITGAGHTSAIDWWALGILLYEMLYGRTPFRGKNRKKTFYNILHKDLTFPSSIPVSLEAK 208
Query: 2935 QLIYRLLHRDPANRLGSYEGAMEIKQHPFFRGINWALVRAATPPELEAPLQDTLEATLPP 3114
QLI+ LL RDP++R+GS GA +IK+HPFF I W L+R +PPEL+ PL+ + + P
Sbjct: 209 QLIHGLLQRDPSSRIGSNTGANDIKEHPFFEDIYWPLIRCMSPPELDVPLKLIGKESQPK 388
Query: 3115 PAADAAHTDMF* 3150
+ D F*
Sbjct: 389 VKPEEGVIDTF* 424
Score = 137 bits (294), Expect = 3e-031
Identities = 66/118 (55%), Positives = 77/118 (65%)
Frame = -2 / -1
Query: 3086 WRGASSSGGVAARTRAQFMPRKKGCCLISIAPS*EPSLFAGSRCSNRYISCLAARLTCML 2907
+ G SSSGG+ R Q M K GC LIS AP EP GS S+ +ISC A+RLT ML
Sbjct: 360 FNGTSSSGGLMQRISGQ*MSSKNGCSLISFAPVFEPMREEGSL*SSPWISCFASRLTGML 181
Query: 2906 AGNLISLCRILANVLCLVFPLKGV*PYNISYRRIPSAHQSTALVWPAPVIISGAMYSS 2733
GN+ SLCR+L NV L FP KGV PY+ISY RIP AHQS ALV PAPV+ A + +
Sbjct: 180 LGNVRSLCRML*NVFFLFFPRKGVRPYSISYNRIPRAHQSMALVCPAPVMTPRAEFGT 7
>gb|BJ547950.1|BJ547950 BJ547950 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal12f06 3', mRNA sequence
Length = 671
Score = 197 bits (425), Expect = 3e-049
Identities = 80/132 (60%), Positives = 100/132 (75%)
Frame = +1 / -1
Query: 2755 IITGAGHTSAVDWWALGILLYEMLYGYTPFRGKTRQRTFANILHKDIRFPASIQVSLAAR 2934
+ITGAGHTSA+DWWALGILLYEMLYG TPFRGK R++TF NILHKD+ FP+SI VSL A+
Sbjct: 656 VITGAGHTSAIDWWALGILLYEMLYGRTPFRGKNRKKTFYNILHKDLTFPSSIPVSLEAK 477
Query: 2935 QLIYRLLHRDPANRLGSYEGAMEIKQHPFFRGINWALVRAATPPELEAPLQDTLEATLPP 3114
QLI+ LL RDP++R+GS GA +IK+HPFF I W L+R +PPEL+ PL+ + + P
Sbjct: 476 QLIHGLLQRDPSSRIGSNTGANDIKEHPFFEDIYWPLIRCMSPPELDVPLKLIGKESQPK 297
Query: 3115 PAADAAHTDMF* 3150
+ D F*
Sbjct: 296 VKPEEGVIDTF* 261
Score = 136 bits (292), Expect = 6e-031
Identities = 65/110 (59%), Positives = 74/110 (67%)
Frame = -2 / +1
Query: 3086 WRGASSSGGVAARTRAQFMPRKKGCCLISIAPS*EPSLFAGSRCSNRYISCLAARLTCML 2907
+ G SSSGG+ R Q M K GC LIS AP EP GS S+ +ISC A+RLT ML
Sbjct: 325 FNGTSSSGGLMQRISGQ*MSSKNGCSLISFAPVFEPMREEGSL*SSPWISCFASRLTGML 504
Query: 2906 AGNLISLCRILANVLCLVFPLKGV*PYNISYRRIPSAHQSTALVWPAPVI 2757
GN+ SLCR+L NV L FP KGV PY+ISY RIP AHQS ALV PAPV+
Sbjct: 505 LGNVRSLCRML*NVFFLFFPRKGVRPYSISYNRIPRAHQSMALVCPAPVM 654
>gb|BJ548315.1|BJ548315 BJ548315 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal23p18 3', mRNA sequence
Length = 654
Score = 197 bits (425), Expect = 3e-049
Identities = 80/132 (60%), Positives = 100/132 (75%)
Frame = +1 / -2
Query: 2755 IITGAGHTSAVDWWALGILLYEMLYGYTPFRGKTRQRTFANILHKDIRFPASIQVSLAAR 2934
+ITGAGHTSA+DWWALGILLYEMLYG TPFRGK R++TF NILHKD+ FP+SI VSL A+
Sbjct: 641 VITGAGHTSAIDWWALGILLYEMLYGRTPFRGKNRKKTFYNILHKDLTFPSSIPVSLEAK 462
Query: 2935 QLIYRLLHRDPANRLGSYEGAMEIKQHPFFRGINWALVRAATPPELEAPLQDTLEATLPP 3114
QLI+ LL RDP++R+GS GA +IK+HPFF I W L+R +PPEL+ PL+ + + P
Sbjct: 461 QLIHGLLQRDPSSRIGSNTGANDIKEHPFFEDIYWPLIRCMSPPELDVPLKLIGKESQPK 282
Query: 3115 PAADAAHTDMF* 3150
+ D F*
Sbjct: 281 VKPEEGVIDTF* 246
Score = 136 bits (292), Expect = 6e-031
Identities = 65/110 (59%), Positives = 74/110 (67%)
Frame = -2 / +1
Query: 3086 WRGASSSGGVAARTRAQFMPRKKGCCLISIAPS*EPSLFAGSRCSNRYISCLAARLTCML 2907
+ G SSSGG+ R Q M K GC LIS AP EP GS S+ +ISC A+RLT ML
Sbjct: 310 FNGTSSSGGLMQRISGQ*MSSKNGCSLISFAPVFEPMREEGSL*SSPWISCFASRLTGML 489
Query: 2906 AGNLISLCRILANVLCLVFPLKGV*PYNISYRRIPSAHQSTALVWPAPVI 2757
GN+ SLCR+L NV L FP KGV PY+ISY RIP AHQS ALV PAPV+
Sbjct: 490 LGNVRSLCRML*NVFFLFFPRKGVRPYSISYNRIPRAHQSMALVCPAPVM 639
>gb|BQ465179.1|BQ465179 HU02N24r HU Hordeum vulgare subsp. vulgare cDNA clone HU02N24
5-PRIME, mRNA sequence
Length = 624
Score = 181 bits (389), Expect = 3e-044
Identities = 72/119 (60%), Positives = 88/119 (73%)
Frame = +1 / +2
Query: 2713 SNSFVGTEEYIAPEIITGAGHTSAVDWWALGILLYEMLYGYTPFRGKTRQRTFANILHKD 2892
SNSFVGT EY+APEII G GH S+VDWW LGI LYE+LYG TPFRG T N++ +
Sbjct: 242 SNSFVGTHEYLAPEIIRGDGHGSSVDWWTLGIFLYELLYGKTPFRGPGNDETLTNVVSQG 421
Query: 2893 IRFPASIQVSLAARQLIYRLLHRDPANRLGSYEGAMEIKQHPFFRGINWALVRAATPPE 3069
++FP S VS AR LI LL ++P +RLGS +GA EIK+HPFF+G+NWAL+R PPE
Sbjct: 422 LKFPDSPAVSYQARDLIRGLLVKEPEHRLGSRKGAAEIKRHPFFQGLNWALIRWTAPPE 598
Score = 121 bits (258), Expect = 3e-026
Identities = 62/119 (52%), Positives = 71/119 (59%)
Frame = -2 / -1
Query: 3068 SGGVAARTRAQFMPRKKGCCLISIAPS*EPSLFAGSRCSNRYISCLAARLTCMLAGNLIS 2889
SGG R +AQF P KKGC LIS AP EPS +GS SN I A LT L+GN
Sbjct: 597 SGGAVQRIKAQFRPWKKGCRLISAAPFLEPSRCSGSFTSNPLIRSRAW*LTAGLSGNFSP 418
Query: 2888 LCRILANVLCLVFPLKGV*PYNISYRRIPSAHQSTALVWPAPVIISGAMYSSVPTKEFD 2712
+V L PL GV P + S R+IP HQST L WP+P++ISGA YS VPT EFD
Sbjct: 417 CETTFVSVSSLPGPLNGVLP*SNS*RKIPRVHQSTELPWPSPLMISGARYSWVPTNEFD 241
>gb|BQ470446.1|BQ470446 HX03A05r HX Hordeum vulgare subsp. vulgare cDNA clone HX03A05
5-PRIME, mRNA sequence
Length = 666
Score = 181 bits (389), Expect = 3e-044
Identities = 72/119 (60%), Positives = 88/119 (73%)
Frame = +1 / +2
Query: 2713 SNSFVGTEEYIAPEIITGAGHTSAVDWWALGILLYEMLYGYTPFRGKTRQRTFANILHKD 2892
SNSFVGT EY+APEII G GH S+VDWW LGI LYE+LYG TPFRG T N++ +
Sbjct: 140 SNSFVGTHEYLAPEIIRGDGHGSSVDWWTLGIFLYELLYGKTPFRGPGNDETLTNVVSQG 319
Query: 2893 IRFPASIQVSLAARQLIYRLLHRDPANRLGSYEGAMEIKQHPFFRGINWALVRAATPPE 3069
++FP S VS AR LI LL ++P +RLGS +GA EIK+HPFF+G+NWAL+R PPE
Sbjct: 320 LKFPDSPAVSYQARDLIRGLLVKEPEHRLGSRKGAAEIKRHPFFQGLNWALIRWTAPPE 496
Score = 121 bits (258), Expect = 3e-026
Identities = 62/119 (52%), Positives = 71/119 (59%)
Frame = -2 / -1
Query: 3068 SGGVAARTRAQFMPRKKGCCLISIAPS*EPSLFAGSRCSNRYISCLAARLTCMLAGNLIS 2889
SGG R +AQF P KKGC LIS AP EPS +GS SN I A LT L+GN
Sbjct: 495 SGGAVQRIKAQFRPWKKGCRLISAAPFLEPSRCSGSFTSNPLIRSRAW*LTAGLSGNFSP 316
Query: 2888 LCRILANVLCLVFPLKGV*PYNISYRRIPSAHQSTALVWPAPVIISGAMYSSVPTKEFD 2712
+V L PL GV P + S R+IP HQST L WP+P++ISGA YS VPT EFD
Sbjct: 315 CETTFVSVSSLPGPLNGVLP*SNS*RKIPRVHQSTELPWPSPLMISGARYSWVPTNEFD 139
>gb|BQ470603.1|BQ470603 HX03H14r HX Hordeum vulgare subsp. vulgare cDNA clone HX03H14
5-PRIME, mRNA sequence
Length = 629
Score = 181 bits (389), Expect = 3e-044
Identities = 72/119 (60%), Positives = 88/119 (73%)
Frame = +1 / +2
Query: 2713 SNSFVGTEEYIAPEIITGAGHTSAVDWWALGILLYEMLYGYTPFRGKTRQRTFANILHKD 2892
SNSFVGT EY+APEII G GH S+VDWW LGI LYE+LYG TPFRG T N++ +
Sbjct: 140 SNSFVGTHEYLAPEIIRGDGHGSSVDWWTLGIFLYELLYGKTPFRGPGNDETLTNVVSQG 319
Query: 2893 IRFPASIQVSLAARQLIYRLLHRDPANRLGSYEGAMEIKQHPFFRGINWALVRAATPPE 3069
++FP S VS AR LI LL ++P +RLGS +GA EIK+HPFF+G+NWAL+R PPE
Sbjct: 320 LKFPDSPAVSYQARDLIRGLLVKEPEHRLGSRKGAAEIKRHPFFQGLNWALIRWTAPPE 496
Score = 121 bits (258), Expect = 3e-026
Identities = 62/119 (52%), Positives = 71/119 (59%)
Frame = -2 / -3
Query: 3068 SGGVAARTRAQFMPRKKGCCLISIAPS*EPSLFAGSRCSNRYISCLAARLTCMLAGNLIS 2889
SGG R +AQF P KKGC LIS AP EPS +GS SN I A LT L+GN
Sbjct: 495 SGGAVQRIKAQFRPWKKGCRLISAAPFLEPSRCSGSFTSNPLIRSRAW*LTAGLSGNFSP 316
Query: 2888 LCRILANVLCLVFPLKGV*PYNISYRRIPSAHQSTALVWPAPVIISGAMYSSVPTKEFD 2712
+V L PL GV P + S R+IP HQST L WP+P++ISGA YS VPT EFD
Sbjct: 315 CETTFVSVSSLPGPLNGVLP*SNS*RKIPRVHQSTELPWPSPLMISGARYSWVPTNEFD 139
>gb|CA007256.1|CA007256 HU07F09r HU Hordeum vulgare subsp. vulgare cDNA clone HU07F09
5-PRIME, mRNA sequence
Length = 592
Score = 181 bits (389), Expect = 3e-044
Identities = 72/119 (60%), Positives = 88/119 (73%)
Frame = +1 / +2
Query: 2713 SNSFVGTEEYIAPEIITGAGHTSAVDWWALGILLYEMLYGYTPFRGKTRQRTFANILHKD 2892
SNSFVGT EY+APEII G GH S+VDWW LGI LYE+LYG TPFRG T N++ +
Sbjct: 77 SNSFVGTHEYLAPEIIRGDGHGSSVDWWTLGIFLYELLYGKTPFRGPGNDETLTNVVSQG 256
Query: 2893 IRFPASIQVSLAARQLIYRLLHRDPANRLGSYEGAMEIKQHPFFRGINWALVRAATPPE 3069
++FP S VS AR LI LL ++P +RLGS +GA EIK+HPFF+G+NWAL+R PPE
Sbjct: 257 LKFPDSPAVSYQARDLIRGLLVKEPEHRLGSRKGAAEIKRHPFFQGLNWALIRWTAPPE 433
Score = 121 bits (258), Expect = 3e-026
Identities = 62/119 (52%), Positives = 71/119 (59%)
Frame = -2 / -2
Query: 3068 SGGVAARTRAQFMPRKKGCCLISIAPS*EPSLFAGSRCSNRYISCLAARLTCMLAGNLIS 2889
SGG R +AQF P KKGC LIS AP EPS +GS SN I A LT L+GN
Sbjct: 432 SGGAVQRIKAQFRPWKKGCRLISAAPFLEPSRCSGSFTSNPLIRSRAW*LTAGLSGNFSP 253
Query: 2888 LCRILANVLCLVFPLKGV*PYNISYRRIPSAHQSTALVWPAPVIISGAMYSSVPTKEFD 2712
+V L PL GV P + S R+IP HQST L WP+P++ISGA YS VPT EFD
Sbjct: 252 CETTFVSVSSLPGPLNGVLP*SNS*RKIPRVHQSTELPWPSPLMISGARYSWVPTNEFD 76
>gb|BQ660212.1|BQ660212 HI01I09w HI Hordeum vulgare subsp. vulgare cDNA clone HI01I09
3-PRIME, mRNA sequence
Length = 677
Score = 177 bits (381), Expect = 3e-043
Identities = 69/122 (56%), Positives = 87/122 (71%)
Frame = +1 / -3
Query: 2722 FVGTEEYIAPEIITGAGHTSAVDWWALGILLYEMLYGYTPFRGKTRQRTFANILHKDIRF 2901
FVGT EY+APEII G GH SAVDWW GI LYE+L+G TPF+G + T N++ + +RF
Sbjct: 675 FVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRF 496
Query: 2902 PASIQVSLAARQLIYRLLHRDPANRLGSYEGAMEIKQHPFFRGINWALVRAATPPELEAP 3081
P S V AAR LI LL ++P +RL GA EIKQHPFF G+NWAL+R ATPP++ P
Sbjct: 495 PESPVVGFAARDLIRGLLIKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCATPPDIPKP 316
Query: 3082 LQ 3087
++
Sbjct: 315 VE 310
Score = 105 bits (225), Expect = 1e-021
Identities = 55/119 (46%), Positives = 65/119 (54%)
Frame = -2 / +2
Query: 3080 GASSSGGVAARTRAQFMPRKKGCCLISIAPS*EPSLFAGSRCSNRYISCLAARLTCMLAG 2901
G SGGVA AQ P K GCC IS+AP + GS SN + LAA+ T +G
Sbjct: 317 GLGISGGVAHLINAQLTPSKNGCCFISVAPRL*ANRCCGSLISNPLMRSLAAKPTTGDSG 496
Query: 2900 NLISLCRILANVLCLVFPLKGV*PYNISYRRIPSAHQSTALVWPAPVIISGAMYSSVPT 2724
NL L +V PL GV P SY+ +P HQSTAL P+P +ISGA YS VPT
Sbjct: 497 NLRGWPTTLNSVALFPEPLNGVLPKRSSYKNMPKVHQSTALPCPSPFMISGAKYSWVPT 673
>gb|BF630513.2|BF630513 HVSMEb0011A19f Hordeum vulgare seedling shoot EST library HVcDNA0002
(Dehydration stress) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEb0011A19f, mRNA sequence
Length = 741
Score = 84.5 bits (178), Expect(3) = 9e-043
Identities = 40/108 (37%), Positives = 57/108 (52%)
Frame = +1 / +1
Query: 2113 IQKVLENGESIDLKHFRPVRPLGSGDTGSVHLVELLGTGEYFAMKAMDKSVMLNRNKVHR 2292
+ + E++ L F ++ +G G G V+ V T E +AMK M K L +N
Sbjct: 13 LNNTTKENEAVGLDDFELLKLVGQGAFGKVYQVRRKCTSEIYAMKVMRKDKNLEKNHAEY 192
Query: 2293 ATAERQILDMLDHPFLPTLYASFQTKTHICLIVDYCAGGELFMLLDRQ 2436
AER IL +DHPF+ L SFQTK + L++D+ GG LF L +Q
Sbjct: 193 MKAERDILTKVDHPFVVQLRYSFQTKYRLYLVLDFVNGGHLFFQLYQQ 336
Score = 69.8 bits (146), Expect(3) = 9e-043
Identities = 27/52 (51%), Positives = 37/52 (71%)
Frame = +1 / +1
Query: 2446 VLKEDAVRFYAAEVVTALEYLHCQGIIYRDLKPENILLHRDGHISLTDFDLS 2601
+ +E+ R Y AE+V+A+ +LH GI++RDLKPENILL GH LTD L+
Sbjct: 340 LFREELARLYTAEIVSAVAHLHANGIMHRDLKPENILLDAHGHAMLTDXGLA 495
Score = 60.2 bits (125), Expect(3) = 9e-043
Identities = 22/40 (55%), Positives = 28/40 (70%)
Frame = +1 / +1
Query: 2713 SNSFVGTEEYIAPEIITGAGHTSAVDWWALGILLYEMLYG 2832
SNS GT EY+APEI+ G H +WW++GILL+ ML G
Sbjct: 520 SNSMCGTVEYMAPEIVHGRSHEKGANWWSVGILLFGMLTG 639
>gb|AV914147.1|AV914147 AV914147 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags4o22 5', mRNA sequence
Length = 557
Score = 172 bits (371), Expect = 8e-042
Identities = 70/82 (85%), Positives = 74/82 (90%)
Frame = +1 / +1
Query: 2839 PFRGKTRQRTFANILHKDIRFPASIQVSLAARQLIYRLLHRDPANRLGSYEGAMEIKQHP 3018
P GKTRQRTFANILHKDIRFPASI VSL ARQLIYRLLHRDPANR+GSYEG+ EIKQHP
Sbjct: 10 PSAGKTRQRTFANILHKDIRFPASISVSLPARQLIYRLLHRDPANRMGSYEGSNEIKQHP 189
Query: 3019 FFRGINWALVRAATPPELEAPL 3084
FFRGINWALVR PP+L+APL
Sbjct: 190 FFRGINWALVRGTAPPKLDAPL 255
Score = 135 bits (289), Expect = 2e-030
Identities = 58/81 (71%), Positives = 63/81 (77%)
Frame = -2 / -1
Query: 3080 GASSSGGVAARTRAQFMPRKKGCCLISIAPS*EPSLFAGSRCSNRYISCLAARLTCMLAG 2901
GASS GG RTRAQ MPRK GCC IS PS +P LFAGS CSN ISCLA RLT +LAG
Sbjct: 251 GASSFGGAVPRTRAQLMPRKNGCCFISFDPSYDPILFAGSLCSNL*ISCLAGRLTDILAG 72
Query: 2900 NLISLCRILANVLCLVFPLKG 2838
NL+SLCR+LANVLCLV P +G
Sbjct: 71 NLMSLCRMLANVLCLVLPAEG 9
>gb|BG365974.2|BG365974 HVSMEi0005I24f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0005I24f, mRNA sequence
Length = 936
Score = 77.6 bits (163), Expect(4) = 8e-042
Identities = 37/84 (44%), Positives = 47/84 (55%)
Frame = +1 / +1
Query: 2185 GDTGSVHLVELLGTGEYFAMKAMDKSVMLNRNKVHRATAERQILDMLDHPFLPTLYASFQ 2364
G G V V GT E +AMK M K +L +N AER IL +DHPF+ L SFQ
Sbjct: 4 GAFGKVFHVRKKGTSEIYAMKVMRKDKILEKNHSEYMKAERDILTKVDHPFVVQLRYSFQ 183
Query: 2365 TKTHICLIVDYCAGGELFMLLDRQ 2436
TK + L++D+ GG LF L +Q
Sbjct: 184 TKYRLYLVLDFVNGGHLFFQLYKQ 255
Score = 73.9 bits (155), Expect(4) = 8e-042
Identities = 27/52 (51%), Positives = 39/52 (75%)
Frame = +1 / +1
Query: 2446 VLKEDAVRFYAAEVVTALEYLHCQGIIYRDLKPENILLHRDGHISLTDFDLS 2601
+ +E+ R Y AE+++A+ +LH GI++RDLKPENILL +GH LTDF L+
Sbjct: 259 LFREELARIYTAEIISAVAHLHANGIMHRDLKPENILLDAEGHAMLTDFGLA 414
Score = 43.2 bits (88), Expect(4) = 8e-042
Identities = 16/27 (59%), Positives = 19/27 (70%)
Frame = +1 / +3
Query: 2770 GHTSAVDWWALGILLYEMLYGYTPFRG 2850
G A DWW++GILL+EML G PF G
Sbjct: 498 GIEKAADWWSVGILLFEMLTGKPPFVG 578
Score = 34.1 bits (68), Expect(4) = 8e-042
Identities = 14/20 (70%), Positives = 15/20 (75%)
Frame = +1 / +1
Query: 2713 SNSFVGTEEYIAPEIITGAG 2772
SNS GT EY+APEII G G
Sbjct: 439 SNSMCGTLEYMAPEIIQGQG 498
>gb|BJ467740.1|BJ467740 BJ467740 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags29j23 3', mRNA sequence
Length = 507
Score = 172 bits (370), Expect = 1e-041
Identities = 69/86 (80%), Positives = 73/86 (84%)
Frame = +1 / -1
Query: 2827 YGYTPFRGKTRQRTFANILHKDIRFPASIQVSLAARQLIYRLLHRDPANRLGSYEGAMEI 3006
YG PF GK RTF NILHKDIRFPASI VSL ARQLIYRLLHRDPANR+GSYEG+ EI
Sbjct: 507 YGXXPFXGKXXXRTFXNILHKDIRFPASISVSLPARQLIYRLLHRDPANRMGSYEGSNEI 328
Query: 3007 KQHPFFRGINWALVRAATPPELEAPL 3084
KQHPFFRGINWALVR PP+L+APL
Sbjct: 327 KQHPFFRGINWALVRGTAPPKLDAPL 250
Score = 127 bits (273), Expect = 3e-028
Identities = 57/84 (67%), Positives = 61/84 (72%)
Frame = -2 / +2
Query: 3080 GASSSGGVAARTRAQFMPRKKGCCLISIAPS*EPSLFAGSRCSNRYISCLAARLTCMLAG 2901
GASS GG RTRAQ MPRK GCC IS PS +P LFAGS CSN ISCLA RLT +LAG
Sbjct: 254 GASSFGGAVPRTRAQLMPRKNGCCFISFDPSYDPILFAGSLCSNL*ISCLAGRLTDILAG 433
Query: 2900 NLISLCRILANVLCLVFPLKGV*P 2829
NL+SLCR+L VL L P KG *P
Sbjct: 434 NLMSLCRMLXXVLXLXLPXKGX*P 505
>gb|BJ546987.1|BJ546987 BJ546987 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal23p18 5', mRNA sequence
Length = 441
Score = 172 bits (370), Expect = 1e-041
Identities = 70/121 (57%), Positives = 89/121 (73%)
Frame = +1 / +1
Query: 2788 DWWALGILLYEMLYGYTPFRGKTRQRTFANILHKDIRFPASIQVSLAARQLIYRLLHRDP 2967
DWWALGILLYEMLYG TPFRGK R++TF N+LHKD+ FP+SI VSL A+QLI+ LL RDP
Sbjct: 37 DWWALGILLYEMLYGRTPFRGKNRKKTFYNMLHKDLTFPSSIPVSLEAKQLIHGLLQRDP 216
Query: 2968 ANRLGSYEGAMEIKQHPFFRGINWALVRAATPPELEAPLQDTLEATLPPPAADAAHTDMF 3147
++R+GS GA +IK+HPFF I W L+R +PPEL+ PL+ + + P + D F
Sbjct: 217 SSRIGSNTGANDIKEHPFFEDIYWPLIRCMSPPELDVPLKLIGKESQPKVKPEEGVIDTF 396
Query: 3148 * 3150
*
Sbjct: 397 * 399
Score = 116 bits (248), Expect = 7e-025
Identities = 56/100 (56%), Positives = 64/100 (64%)
Frame = -2 / -2
Query: 3086 WRGASSSGGVAARTRAQFMPRKKGCCLISIAPS*EPSLFAGSRCSNRYISCLAARLTCML 2907
+ G SSSGG+ R Q M K GC LIS AP P GS S+ +ISC A+RLT ML
Sbjct: 335 FNGTSSSGGLMQRISGQ*MSSKNGCSLISFAPVFXPMREEGSL*SSPWISCFASRLTGML 156
Query: 2906 AGNLISLCRILANVLCLVFPLKGV*PYNISYRRIPSAHQS 2787
GN+ SLC +L NV L FP KGV PY+ISY RIP AHQS
Sbjct: 155 LGNVRSLCSML*NVFFLFFPRKGVRPYSISYNRIPRAHQS 36
>gb|CB882656.1|CB882656 HL02H20w HL Hordeum vulgare subsp. vulgare cDNA clone HL02H20
3-PRIME, mRNA sequence
Length = 619
Score = 73.0 bits (153), Expect(3) = 2e-040
Identities = 28/52 (53%), Positives = 38/52 (73%)
Frame = +1 / +1
Query: 2446 VLKEDAVRFYAAEVVTALEYLHCQGIIYRDLKPENILLHRDGHISLTDFDLS 2601
+ +E+ R Y AE+V+A+ +LH GI++RDLKPENILL GH LTDF L+
Sbjct: 205 LFREELARLYTAEIVSAVAHLHANGIMHRDLKPENILLDAHGHAMLTDFGLA 360
Score = 68.9 bits (144), Expect(3) = 2e-040
Identities = 25/38 (65%), Positives = 30/38 (78%)
Frame = +1 / +1
Query: 2713 SNSFVGTEEYIAPEIITGAGHTSAVDWWALGILLYEML 2826
SNS GT EY+APEI+ G GH A DWW++GILL+EML
Sbjct: 385 SNSMCGTVEYMAPEIVQGRGHDKAADWWSVGILLFEML 498
Score = 64.3 bits (134), Expect(3) = 2e-040
Identities = 29/65 (44%), Positives = 38/65 (58%)
Frame = +1 / +1
Query: 2242 MKAMDKSVMLNRNKVHRATAERQILDMLDHPFLPTLYASFQTKTHICLIVDYCAGGELFM 2421
MK M K +L +N AER IL +DHPF+ L SFQTK + L++D+ GG LF
Sbjct: 7 MKVMRKDKILEKNHAEYMKAERDILTKVDHPFVVQLRYSFQTKYRLYLVLDFVNGGHLFF 186
Query: 2422 LLDRQ 2436
L +Q
Sbjct: 187 QLYQQ 201
>gb|AV832731.1|AV832731 AV832731 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare top three leaves adult, heading stage Hordeum
vulgare subsp. vulgare cDNA clone baal3j22, mRNA sequence
Length = 476
Score = 160 bits (343), Expect = 6e-038
Identities = 67/118 (56%), Positives = 86/118 (72%)
Frame = +1 / +3
Query: 2797 ALGILLYEMLYGYTPFRGKTRQRTFANILHKDIRFPASIQVSLAARQLIYRLLHRDPANR 2976
A+GILLYEMLYG TPFRGK R++TF NILHKD+ FP+SI VSL A+QLI+ LL RDP++R
Sbjct: 54 AIGILLYEMLYGRTPFRGKNRKKTFYNILHKDLTFPSSIPVSLEAKQLIHGLLQRDPSSR 233
Query: 2977 LGSYEGAMEIKQHPFFRGINWALVRAATPPELEAPLQDTLEATLPPPAADAAHTDMF* 3150
+GS GA +IK+HPFF I W L+R +PPEL+ PL+ + + P + D F*
Sbjct: 234 IGSNTGANDIKEHPFFEDIYWPLIRCMSPPELDVPLKLIGKESQPKVKPEEGVIDTF* 407
Score = 113 bits (242), Expect = 5e-024
Identities = 55/97 (56%), Positives = 63/97 (64%)
Frame = -2 / -2
Query: 3086 WRGASSSGGVAARTRAQFMPRKKGCCLISIAPS*EPSLFAGSRCSNRYISCLAARLTCML 2907
+ G SSSGG+ R Q M K GC LIS AP EP GS S+ +ISC A+RLT ML
Sbjct: 343 FNGTSSSGGLMQRISGQ*MSSKNGCSLISFAPVFEPMREEGSL*SSPWISCFASRLTGML 164
Query: 2906 AGNLISLCRILANVLCLVFPLKGV*PYNISYRRIPSA 2796
GN+ SLCR+L NV L FP KGV PY+ISY RIP A
Sbjct: 163 LGNVRSLCRML*NVFFLFFPRKGVRPYSISYNRIPIA 53
>gb|BJ547677.1|BJ547677 BJ547677 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal34l02 5', mRNA sequence
Length = 616
Score = 160 bits (343), Expect = 6e-038
Identities = 67/118 (56%), Positives = 86/118 (72%)
Frame = +1 / +1
Query: 2797 ALGILLYEMLYGYTPFRGKTRQRTFANILHKDIRFPASIQVSLAARQLIYRLLHRDPANR 2976
A+GILLYEMLYG TPFRGK R++TF NILHKD+ FP+SI VSL A+QLI+ LL RDP++R
Sbjct: 58 AIGILLYEMLYGRTPFRGKNRKKTFYNILHKDLTFPSSIPVSLEAKQLIHGLLQRDPSSR 237
Query: 2977 LGSYEGAMEIKQHPFFRGINWALVRAATPPELEAPLQDTLEATLPPPAADAAHTDMF* 3150
+GS GA +IK+HPFF I W L+R +PPEL+ PL+ + + P + D F*
Sbjct: 238 IGSNTGANDIKEHPFFEDIYWPLIRCMSPPELDVPLKLIGKESQPKVKPEEGVIDTF* 411
Score = 113 bits (242), Expect = 5e-024
Identities = 55/97 (56%), Positives = 63/97 (64%)
Frame = -2 / -3
Query: 3086 WRGASSSGGVAARTRAQFMPRKKGCCLISIAPS*EPSLFAGSRCSNRYISCLAARLTCML 2907
+ G SSSGG+ R Q M K GC LIS AP EP GS S+ +ISC A+RLT ML
Sbjct: 347 FNGTSSSGGLMQRISGQ*MSSKNGCSLISFAPVFEPMREEGSL*SSPWISCFASRLTGML 168
Query: 2906 AGNLISLCRILANVLCLVFPLKGV*PYNISYRRIPSA 2796
GN+ SLCR+L NV L FP KGV PY+ISY RIP A
Sbjct: 167 LGNVRSLCRML*NVFFLFFPRKGVRPYSISYNRIPIA 57
>gb|BG367473.2|BG367473 HVSMEi0012G07f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0012G07f, mRNA sequence
Length = 704
Score = 86.3 bits (182), Expect(3) = 9e-038
Identities = 41/100 (41%), Positives = 55/100 (55%)
Frame = +1 / +2
Query: 2137 ESIDLKHFRPVRPLGSGDTGSVHLVELLGTGEYFAMKAMDKSVMLNRNKVHRATAERQIL 2316
E + L F ++ +G G G V V GT E +AMK M K +L +N AER IL
Sbjct: 149 EGVGLDDFEILKLVGQGAFGKVFHVRKKGTSEIYAMKVMRKDKILEKNHSEYMKAERDIL 328
Query: 2317 DMLDHPFLPTLYASFQTKTHICLIVDYCAGGELFMLLDRQ 2436
+DHPF+ L SFQTK + L++D+ GG LF L +Q
Sbjct: 329 TKVDHPFVVQLRYSFQTKYRLYLVLDFVNGGHLFFQLYKQ 448
Score = 73.5 bits (154), Expect(3) = 9e-038
Identities = 27/52 (51%), Positives = 39/52 (75%)
Frame = +1 / +2
Query: 2446 VLKEDAVRFYAAEVVTALEYLHCQGIIYRDLKPENILLHRDGHISLTDFDLS 2601
+ +E+ R Y AE+++A+ +LH GI++RDLKPENILL +GH LTDF L+
Sbjct: 452 LFREELARIYTAEIISAVAHLHANGIMHRDLKPENILLDAEGHALLTDFGLA 607
Score = 37.7 bits (76), Expect(3) = 9e-038
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = +1 / +2
Query: 2713 SNSFVGTEEYIAPEIITGAGH 2775
SNS GT EY+APEII G GH
Sbjct: 632 SNSMCGTLEYMAPEIIQGQGH 694
>gb|BQ467802.1|BQ467802 HS04P07r HS Hordeum vulgare subsp. vulgare cDNA clone HS04P07
5-PRIME, mRNA sequence
Length = 436
Score = 149 bits (321), Expect = 6e-035
Identities = 61/117 (52%), Positives = 79/117 (67%)
Frame = +1 / +3
Query: 2278 NKVHRATAERQILDMLDHPFLPTLYASFQTKTHICLIVDYCAGGELFMLLDRQPMKVLKE 2457
++V AE ++L LDHPF+PTLYA + C ++DYC+GG+L +L R+P L
Sbjct: 42 SRVCHVLAESRVLSSLDHPFVPTLYARLDAGRYACFLMDYCSGGDLHSVLRRRPGGRLPV 221
Query: 2458 DAVRFYAAEVVTALEYLHCQGIIYRDLKPENILLHRDGHISLTDFDLSCLTSCRPQV 2628
A RFYAAEV+ ALEYLH G +YRDLKPEN+LL DGH+ L+DFDL+ S P V
Sbjct: 222 AAARFYAAEVLLALEYLHVLGFVYRDLKPENVLLRGDGHVVLSDFDLALPASVEPAV 392
>gb|CA004277.1|CA004277 HS17B22r HS Hordeum vulgare subsp. vulgare cDNA clone HS17B22
5-PRIME, mRNA sequence
Length = 376
Score = 145 bits (312), Expect = 1e-033
Identities = 58/108 (53%), Positives = 76/108 (70%)
Frame = +1 / +3
Query: 2278 NKVHRATAERQILDMLDHPFLPTLYASFQTKTHICLIVDYCAGGELFMLLDRQPMKVLKE 2457
++V AE ++L LDHPF+PTLYA + C ++DYC+GG+L +L R+P L
Sbjct: 42 SRVCHVLAESRVLSSLDHPFVPTLYARLDAGRYACFLMDYCSGGDLHSVLRRRPGGRLPV 221
Query: 2458 DAVRFYAAEVVTALEYLHCQGIIYRDLKPENILLHRDGHISLTDFDLS 2601
A RFYAAEV+ ALEYLH G +YRDLKPEN+LL DGH+ L+DFDL+
Sbjct: 222 AAARFYAAEVLLALEYLHVLGFVYRDLKPENVLLRGDGHVVLSDFDLA 365
>gb|CB874708.1|CB874708 HX06B10w HX Hordeum vulgare subsp. vulgare cDNA clone HX06B10
3-PRIME, mRNA sequence
Length = 585
Score = 144 bits (310), Expect = 2e-033
Identities = 58/118 (49%), Positives = 76/118 (64%)
Frame = +1 / -2
Query: 2779 SAVDWWALGILLYEMLYGYTPFRGKTRQRTFANILHKDIRFPASIQVSLAARQLIYRLLH 2958
SAVDWW GI LYE+L+G TPF+G + T N++ + +RFP VS +AR LI LL
Sbjct: 584 SAVDWWTFGIFLYELLFGXTPFKGSGNRATLFNVIGQPLRFPEYPVVSFSARDLIRGLLV 405
Query: 2959 RDPANRLGSYEGAMEIKQHPFFRGINWALVRAATPPELEAPLQDTLEATLPPPAADAA 3132
++P RLG GA EIKQHPFF G+NWAL+R A+PPE+ P+ + T P + A
Sbjct: 404 KEPQQRLGCKRGATEIKQHPFFEGVNWALIRCASPPEVPKPVDIERQTTKLPVSTSEA 231
>gb|BU995645.1|BU995645 HM10O13r HM Hordeum vulgare subsp. vulgare cDNA clone HM10O13
5-PRIME, mRNA sequence
Length = 617
Score = 143 bits (306), Expect = 7e-033
Identities = 55/103 (53%), Positives = 72/103 (69%)
Frame = +1 / +3
Query: 2779 SAVDWWALGILLYEMLYGYTPFRGKTRQRTFANILHKDIRFPASIQVSLAARQLIYRLLH 2958
SAVDWW GI LYE+L+G TPF+G + T N++ + +RFP S V AAR LI LL
Sbjct: 39 SAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPESPVVGFAARDLIRGLLI 218
Query: 2959 RDPANRLGSYEGAMEIKQHPFFRGINWALVRAATPPELEAPLQ 3087
++P +RL GA EIKQHPFF G+NWAL+R ATPP++ P++
Sbjct: 219 KEPQHRLAYKRGATEIKQHPFFEGVNWALIRCATPPDIPKPVE 347
>gb|BU973765.1|BU973765 HB25O11r BC Hordeum vulgare subsp. vulgare cDNA clone HB25O11
5-PRIME, mRNA sequence
Length = 500
Score = 142 bits (305), Expect = 1e-032
Identities = 59/116 (50%), Positives = 76/116 (65%)
Frame = +1 / +2
Query: 2077 KPHMKDTASWRAIQKVLENGESIDLKHFRPVRPLGSGDTGSVHLVELLGTGEYFAMKAMD 2256
KPH + + W AIQ + S+ L HFR ++ LG GD GSV+L EL GT YFAMK MD
Sbjct: 143 KPHKSNDSRWEAIQVIRTKEGSLGLSHFRLLKRLGCGDIGSVYLSELSGTKCYFAMKIMD 322
Query: 2257 KSVMLNRNKVHRATAERQILDMLDHPFLPTLYASFQTKTHICLIVDYCAGGELFML 2424
K+ + R K+ RA ER+IL LDHPFLPTLY F+T CL++++C GG+L L
Sbjct: 323 KASLAGRKKLLRAQTEREILQCLDHPFLPTLYTHFETDKFSCLVMEFCPGGDLHTL 490
>gb|BG414214.2|BG414214 HVSMEk0001E01f Hordeum vulgare testa/pericarp EST library HVcDNA0013
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEk0001E01f, mRNA sequence
Length = 525
Score = 137 bits (294), Expect = 3e-031
Identities = 55/65 (84%), Positives = 59/65 (90%)
Frame = +1 / +3
Query: 2890 DIRFPASIQVSLAARQLIYRLLHRDPANRLGSYEGAMEIKQHPFFRGINWALVRAATPPE 3069
DIRFPASI VSL ARQLIYRLLHRDPANR+GSYEG+ EIKQHPFFRGINWALVR PP+
Sbjct: 3 DIRFPASISVSLPARQLIYRLLHRDPANRMGSYEGSNEIKQHPFFRGINWALVRGTAPPK 182
Query: 3070 LEAPL 3084
L+APL
Sbjct: 183 LDAPL 197
Score = 102 bits (218), Expect = 1e-020
Identities = 45/64 (70%), Positives = 48/64 (75%)
Frame = -2 / -3
Query: 3080 GASSSGGVAARTRAQFMPRKKGCCLISIAPS*EPSLFAGSRCSNRYISCLAARLTCMLAG 2901
GASS GG RTRAQ MPRK GCC IS PS +P LFAGS CSN ISCLA RLT +LAG
Sbjct: 193 GASSFGGAVPRTRAQLMPRKNGCCFISFDPSYDPILFAGSLCSNL*ISCLAGRLTDILAG 14
Query: 2900 NLIS 2889
NL+S
Sbjct: 13 NLMS 2
>gb|BJ463624.1|BJ463624 BJ463624 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags32m17 5', mRNA sequence
Length = 574
Score = 80.8 bits (170), Expect(3) = 7e-031
Identities = 35/64 (54%), Positives = 42/64 (65%)
Frame = +1 / +2
Query: 2449 LKEDAVRFYAAEVVTALEYLHCQGIIYRDLKPENILLHRDGHISLTDFDLSCLTSCRPQV 2628
L ED RFYAAE+V LEYLH G+I+RD+KPEN+LL DGHI + DF T P
Sbjct: 113 LSEDEARFYAAEIVDILEYLHSVGLIHRDVKPENLLLTSDGHIKIADFGSVKPTVDTPIK 292
Query: 2629 FLPH 2640
LP+
Sbjct: 293 VLPN 304
Score = 67.0 bits (140), Expect(3) = 7e-031
Identities = 26/62 (41%), Positives = 38/62 (61%)
Frame = +1 / +2
Query: 2719 SFVGTEEYIAPEIITGAGHTSAVDWWALGILLYEMLYGYTPFRGKTRQRTFANILHKDIR 2898
+FVGT Y+ PE++ A T D WALG L++ML G +PF+ + F I+ +D+R
Sbjct: 326 TFVGTAAYVPPEVLNSAPATFGNDLWALGCTLFQMLSGSSPFKDASEWLIFQRIIARDLR 505
Query: 2899 FP 2904
FP
Sbjct: 506 FP 511
Score = 26.3 bits (51), Expect(3) = 7e-031
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1 / +2
Query: 2332 PFLPTLYASFQTKTHICLIVDYCAGGELF 2418
P + L+ +FQ + + ++ C GGELF
Sbjct: 2 PGVIRLFFTFQDSYSLYMALESCEGGELF 88
>gb|BF630509.2|BF630509 HVSMEb0011A07f Hordeum vulgare seedling shoot EST library HVcDNA0002
(Dehydration stress) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEb0011A07f, mRNA sequence
Length = 776
Score = 87.7 bits (185), Expect(2) = 1e-030
Identities = 41/108 (37%), Positives = 58/108 (53%)
Frame = +1 / +1
Query: 2113 IQKVLENGESIDLKHFRPVRPLGSGDTGSVHLVELLGTGEYFAMKAMDKSVMLNRNKVHR 2292
+ + E++ L HF ++ +G G G V+ V T E +AMK M K L +N
Sbjct: 16 LNNTTKENEAVGLYHFELLKLVGQGAFGKVYHVRRKCTSEIYAMKVMRKDKNLEKNHAEY 195
Query: 2293 ATAERQILDMLDHPFLPTLYASFQTKTHICLIVDYCAGGELFMLLDRQ 2436
AER IL +DHPF+ L SFQTK + L++D+ GG LF L +Q
Sbjct: 196 MKAERDILTKVDHPFVVQLRYSFQTKYRLYLVLDFVNGGHLFFQLYQQ 339
Score = 68.0 bits (142), Expect(2) = 1e-030
Identities = 27/52 (51%), Positives = 36/52 (69%)
Frame = +1 / +1
Query: 2446 VLKEDAVRFYAAEVVTALEYLHCQGIIYRDLKPENILLHRDGHISLTDFDLS 2601
+ +E+ R Y AE V+A+ +LH GI++RDLKPENILL GH L DF L+
Sbjct: 343 LFREELARLYTAENVSAVAHLHANGIMHRDLKPENILLDAHGHAMLNDFGLA 498
>gb|CA020894.1|CA020894 HZ38D19r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ38D19
5-PRIME, mRNA sequence
Length = 469
Score = 80.8 bits (170), Expect(2) = 2e-029
Identities = 32/51 (62%), Positives = 38/51 (74%)
Frame = +1 / +2
Query: 2449 LKEDAVRFYAAEVVTALEYLHCQGIIYRDLKPENILLHRDGHISLTDFDLS 2601
L ED R Y AEVV ALEYLH I++RDLKP+N+L+ DGH+ LTDF LS
Sbjct: 44 LDEDVARVYLAEVVLALEYLHSMQIVHRDLKPDNLLIAHDGHVKLTDFGLS 196
Score = 70.7 bits (148), Expect(2) = 2e-029
Identities = 23/49 (46%), Positives = 35/49 (71%)
Frame = +1 / +2
Query: 2707 RASNSFVGTEEYIAPEIITGAGHTSAVDWWALGILLYEMLYGYTPFRGK 2853
R S VGT +Y+APEI+ G GH ++ DWW++G++L+E+L G PF +
Sbjct: 317 RQKRSAVGTPDYLAPEILLGTGHGTSADWWSVGVILFELLVGIPPFNAE 463
>gb|BU983633.1|BU983633 HA30G17r HA Hordeum vulgare subsp. vulgare cDNA clone HA30G17
5-PRIME, mRNA sequence
Length = 493
Score = 127 bits (273), Expect = 3e-028
Identities = 50/93 (53%), Positives = 65/93 (69%)
Frame = +1 / +1
Query: 2344 TLYASFQTKTHICLIVDYCAGGELFMLLDRQPMKVLKEDAVRFYAAEVVTALEYLHCQGI 2523
TLY F+T CL++++C GG+L L +QP K E A RFYAAEV+ A+EYLH G+
Sbjct: 91 TLYTHFETDRFSCLVMEFCPGGDLHTLRQKQPGKYFSEYAARFYAAEVLLAIEYLHMLGV 270
Query: 2524 IYRDLKPENILLHRDGHISLTDFDLSCLTSCRP 2622
+YRDLKPEN+L+ DGHI L+DFDLS + P
Sbjct: 271 VYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSP 369
>gb|BJ452578.1|BJ452578 BJ452578 K. Sato unpublished cDNA library, cv. Akashinriki vegetative
stage leaves Hordeum vulgare subsp. vulgare cDNA clone
baak39j04 5', mRNA sequence
Length = 647
Score = 71.6 bits (150), Expect(4) = 3e-028
Identities = 25/57 (43%), Positives = 42/57 (73%)
Frame = +1 / +3
Query: 2449 LKEDAVRFYAAEVVTALEYLHCQGIIYRDLKPENILLHRDGHISLTDFDLSCLTSCR 2619
LKEDA R Y +++ A+++ H +G+ +RDLKPEN+LL + ++ ++DF LS ++ CR
Sbjct: 297 LKEDAARKYFQQLICAVDFCHSRGVYHRDLKPENLLLDENSNLKVSDFGLSTISECR 467
Score = 53.8 bits (111), Expect(4) = 3e-028
Identities = 25/90 (27%), Positives = 43/90 (47%)
Frame = +1 / +3
Query: 2176 LGSGDTGSVHLVELLGTGEYFAMKAMDKSVMLNRNKVHRATAERQILDMLDHPFLPTLYA 2355
LG G V+ + T + A+K DK +L + E ++ ++ HP + +Y
Sbjct: 33 LGQGTFAKVYHARNIETSQSVAIKVTDKEKVLKGGLTDQIKREISVMKLVKHPNIVQMYE 212
Query: 2356 SFQTKTHICLIVDYCAGGELFMLLDRQPMK 2445
TKT I ++++ GGELF + R +K
Sbjct: 213 VMATKTKIYFVLEHVKGGELFNKVQRGRLK 302
Score = 31.3 bits (62), Expect(4) = 3e-028
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +1 / +3
Query: 2788 DWWALGILLYEMLYGYTPFRGK 2853
D W+ G++L+ ++ GY PF+ K
Sbjct: 561 DIWSCGVILFVLMAGYLPFQDK 626
Score = 25.8 bits (50), Expect(4) = 3e-028
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +1 / +3
Query: 2728 GTEEYIAPEIITGAGHTSA 2784
GT Y+APE+I G+ A
Sbjct: 498 GTPAYVAPEVINRKGYDGA 554
>gb|BQ763614.1|BQ763614 EBro02_SQ008_N23_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ008_N23 5', mRNA sequence
Length = 724
Score = 67.0 bits (140), Expect(4) = 9e-028
Identities = 25/54 (46%), Positives = 39/54 (72%)
Frame = +1 / +2
Query: 2449 LKEDAVRFYAAEVVTALEYLHCQGIIYRDLKPENILLHRDGHISLTDFDLSCLT 2610
LKED R Y +++ A++Y H +G+ +RDLKPEN+LL +G + ++DF LS L+
Sbjct: 272 LKEDDARKYFQQLINAVDYCHSRGVYHRDLKPENLLLDANGTLKVSDFGLSALS 433
Score = 52.4 bits (108), Expect(4) = 9e-028
Identities = 23/81 (28%), Positives = 40/81 (49%)
Frame = +1 / +2
Query: 2176 LGSGDTGSVHLVELLGTGEYFAMKAMDKSVMLNRNKVHRATAERQILDMLDHPFLPTLYA 2355
LG G V + TGE A+K +DK +L + + E + ++ HP + +Y
Sbjct: 5 LGEGTFAKVKFARNVETGENVAIKILDKDKVLKHKMIAQIKREISTMKLIRHPNVIRMYE 184
Query: 2356 SFQTKTHICLIVDYCAGGELF 2418
++T I ++++ GGELF
Sbjct: 185 VMASRTKIYIVMELVTGGELF 247
Score = 34.1 bits (68), Expect(4) = 9e-028
Identities = 12/45 (26%), Positives = 20/45 (44%)
Frame = +1 / +2
Query: 2788 DWWALGILLYEMLYGYTPFRGKTRQRTFANILHKDIRFPASIQVS 2922
D W+ G++L+ ++ GY PF + I D P+ S
Sbjct: 536 DLWSCGVILFVLMAGYLPFEDSNLMALYKKIYKADFSCPSWFSTS 670
Score = 27.2 bits (53), Expect(4) = 9e-028
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +1 / +2
Query: 2728 GTEEYIAPEIITGAGHTSA 2784
GT Y+APE+I G+ A
Sbjct: 473 GTPNYVAPEVINNKGYDGA 529
>gb|CA021581.1|CA021581 HZ40I04r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ40I04
5-PRIME, mRNA sequence
Length = 637
Score = 123 bits (263), Expect = 6e-027
Identities = 52/107 (48%), Positives = 69/107 (64%)
Frame = +1 / +2
Query: 2077 KPHMKDTASWRAIQKVLENGESIDLKHFRPVRPLGSGDTGSVHLVELLGTGEYFAMKAMD 2256
KPH + + W AIQ V + L FR ++ LGSGD GSV+L EL GT +FAMK MD
Sbjct: 317 KPHKGNDSRWEAIQVVKSREGVLGLNQFRLLKKLGSGDIGSVYLSELSGTKSHFAMKVMD 496
Query: 2257 KSVMLNRNKVHRATAERQILDMLDHPFLPTLYASFQTKTHICLIVDY 2397
K+ + +R K+ RA ER+IL LDHPFLPTLY +T CL++++
Sbjct: 497 KTSLASRKKLLRAQTEREILQSLDHPFLPTLYTHXETDKFSCLVMEF 637
>gb|AV916490.1|AV916490 AV916490 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17g24 5', mRNA sequence
Length = 583
Score = 71.6 bits (150), Expect(4) = 1e-026
Identities = 25/57 (43%), Positives = 42/57 (73%)
Frame = +1 / +1
Query: 2449 LKEDAVRFYAAEVVTALEYLHCQGIIYRDLKPENILLHRDGHISLTDFDLSCLTSCR 2619
LKEDA R Y +++ A+++ H +G+ +RDLKPEN+LL + ++ ++DF LS ++ CR
Sbjct: 235 LKEDAARKYFQQLICAVDFCHSRGVYHRDLKPENLLLDENSNLKVSDFGLSTISECR 405
Score = 47.8 bits (98), Expect(4) = 1e-026
Identities = 21/74 (28%), Positives = 37/74 (50%)
Frame = +1 / +1
Query: 2224 TGEYFAMKAMDKSVMLNRNKVHRATAERQILDMLDHPFLPTLYASFQTKTHICLIVDYCA 2403
T + A+K DK +L + E ++ ++ HP + +Y TKT I ++++
Sbjct: 19 TSQSVAIKVTDKEKVLKGGLTDQIKREISVMKLVKHPNIVQMYEVMATKTKIYFVLEHVK 198
Query: 2404 GGELFMLLDRQPMK 2445
GGELF + R +K
Sbjct: 199 GGELFNKVQRGRLK 240
Score = 31.3 bits (62), Expect(4) = 1e-026
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +1 / +1
Query: 2788 DWWALGILLYEMLYGYTPFRGK 2853
D W+ G++L+ ++ GY PF+ K
Sbjct: 499 DIWSCGVILFVLMAGYLPFQDK 564
Score = 25.8 bits (50), Expect(4) = 1e-026
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +1 / +1
Query: 2728 GTEEYIAPEIITGAGHTSA 2784
GT Y+APE+I G+ A
Sbjct: 436 GTPAYVAPEVINRKGYDGA 492
>gb|CA014505.1|CA014505 HT11I16r HT Hordeum vulgare subsp. vulgare cDNA clone HT11I16
5-PRIME, mRNA sequence
Length = 670
Score = 74.4 bits (156), Expect(2) = 2e-026
Identities = 34/87 (39%), Positives = 48/87 (55%)
Frame = +1 / +1
Query: 2176 LGSGDTGSVHLVELLGTGEYFAMKAMDKSVMLNRNKVHRATAERQILDMLDHPFLPTLYA 2355
+G G G V + TG +AMK + KS ML R +V AER +L +DH + LY
Sbjct: 115 IGKGAFGEVRVCREKTTGNVYAMKKLKKSEMLRRGQVEHVRAERNLLAEVDHHCIVKLYC 294
Query: 2356 SFQTKTHICLIVDYCAGGELFMLLDRQ 2436
SFQ + LI++Y GG++ LL R+
Sbjct: 295 SFQDNEFLYLIMEYLPGGDMMTLLMRK 375
Score = 66.6 bits (139), Expect(2) = 2e-026
Identities = 26/50 (52%), Positives = 34/50 (68%)
Frame = +1 / +1
Query: 2449 LKEDAVRFYAAEVVTALEYLHCQGIIYRDLKPENILLHRDGHISLTDFDL 2598
L ED RFY E V A+E +H I+RD+KP+N+LL R GH+ L+DF L
Sbjct: 382 LTEDEARFYVGETVLAIEAIHRHNYIHRDIKPDNLLLDRYGHLRLSDFGL 531
>gb|BU967379.1|BU967379 HB04C03r BC Hordeum vulgare subsp. vulgare cDNA clone HB04C03
5-PRIME, mRNA sequence
Length = 666
Score = 67.0 bits (140), Expect(4) = 4e-026
Identities = 25/54 (46%), Positives = 39/54 (72%)
Frame = +1 / +2
Query: 2449 LKEDAVRFYAAEVVTALEYLHCQGIIYRDLKPENILLHRDGHISLTDFDLSCLT 2610
LKED R Y +++ A++Y H +G+ +RDLKPEN+LL +G + ++DF LS L+
Sbjct: 254 LKEDDARKYFQQLINAVDYCHSRGVYHRDLKPENLLLDANGTLKVSDFGLSALS 415
Score = 46.9 bits (96), Expect(4) = 4e-026
Identities = 19/65 (29%), Positives = 35/65 (53%)
Frame = +1 / +2
Query: 2224 TGEYFAMKAMDKSVMLNRNKVHRATAERQILDMLDHPFLPTLYASFQTKTHICLIVDYCA 2403
TGE A+K +DK +L + + E + ++ HP + +Y ++T I ++++
Sbjct: 35 TGENVAIKILDKDKVLKHKMIAQIKREISTMKLIRHPNVIRMYEVMASRTKIYIVMELVT 214
Query: 2404 GGELF 2418
GGELF
Sbjct: 215 GGELF 229
Score = 34.1 bits (68), Expect(4) = 4e-026
Identities = 12/45 (26%), Positives = 20/45 (44%)
Frame = +1 / +2
Query: 2788 DWWALGILLYEMLYGYTPFRGKTRQRTFANILHKDIRFPASIQVS 2922
D W+ G++L+ ++ GY PF + I D P+ S
Sbjct: 518 DLWSCGVILFVLMAGYLPFEDSNLMALYKKIYKADFSCPSWFSTS 652
Score = 27.2 bits (53), Expect(4) = 4e-026
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +1 / +2
Query: 2728 GTEEYIAPEIITGAGHTSA 2784
GT Y+APE+I G+ A
Sbjct: 455 GTPNYVAPEVINNKGYDGA 511
>gb|BF263820.2|BF263820 HV_CEa0007M06f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0007M06f, mRNA sequence
Length = 812
Score = 55.1 bits (114), Expect(3) = 5e-026
Identities = 23/60 (38%), Positives = 32/60 (53%)
Frame = +1 / +2
Query: 2728 GTEEYIAPEIITGAGHTSAVDWWALGILLYEMLYGYTPFRGKTRQRTFANILHKDIRFPA 2907
GT +Y+ PE++ H VD W+LG L YE LYG PF + R +L +FP+
Sbjct: 620 GTLDYLPPEMVEKTEHDYHVDIWSLGXLWYEFLYGLPPFEAQNTLRHIERLLKWFWKFPS 799
Score = 52.8 bits (109), Expect(3) = 5e-026
Identities = 30/95 (31%), Positives = 44/95 (46%)
Frame = +1 / +2
Query: 2149 LKHFRPVRPLGSGDTGSVHLVELLGTGEYFAMKAMDKSVMLNRNKVHRATAERQILDMLD 2328
L F + LG G G V+L + A+K + KS + H+ E I L
Sbjct: 140 LSDFDVGKALGRGKFGHVYLAREKRSSHIVALKVLFKSQLKQSQVEHQLRREV*IQSHLT 319
Query: 2329 HPFLPTLYASFQTKTHICLIVDYCAGGELFMLLDR 2433
HP + LY F +T + LI+++ A GEL+ L R
Sbjct: 320 HPNILRLYGYFYDQTRVYLILEHAAKGELYKELQR 424
Score = 49.6 bits (102), Expect(3) = 5e-026
Identities = 23/59 (38%), Positives = 32/59 (54%)
Frame = +1 / +2
Query: 2434 QPMKVLKEDAVRFYAAEVVTALEYLHCQGIIYRDLKPENILLHRDGHISLTDFDLSCLT 2610
Q K E Y A + AL YLH + +I+RD+KPEN+L+ G + + DF S T
Sbjct: 419 QRCKHFSERRSATYIASLARALIYLHGKHVIHRDIKPENLLVGVQGELKIADFGWSVHT 595
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,616,325,385
Number of Sequences: 312970
Number of extensions: 27715122
Number of successful extensions: 158970
Number of sequences better than 1.0e-020: 100
length of database: 58,378,179
effective HSP length: 56
effective length of database: 40,851,859
effective search space used: 43017007527
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)