TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3562100.2.1
(759 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BJ460841.1|BJ460841 BJ460841 K. Sato unpublished cDNA li... 229 1e-059
gb|BI948762.1|BI948762 HVSMEl0010L20f Hordeum vulgare spike... 221 5e-057
gb|CB858531.1|CB858531 HI07G08w HI Hordeum vulgare subsp. v... 181 5e-045
gb|BJ455168.1|BJ455168 BJ455168 K. Sato unpublished cDNA li... 169 1e-041
gb|BJ473611.1|BJ473611 BJ473611 K. Sato unpublished cDNA li... 169 1e-041
gb|BI780615.2|BI780615 EBes01_SQ001_H19_R embryo sac, 4-6 D... 156 1e-037
gb|BJ453298.1|BJ453298 BJ453298 K. Sato unpublished cDNA li... 147 8e-035
gb|CV064134.1|CV064134 BNEL98d5 Barley EST endosperm librar... 106 1e-022
>gb|BJ460841.1|BJ460841 BJ460841 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak42g23 3', mRNA sequence
Length = 644
Score = 229 bits (495), Expect = 1e-059
Identities = 97/119 (81%), Positives = 104/119 (87%)
Frame = +3 / -1
Query: 3 SXXVXTXXXXDXNXXAFKEVAIISHPRVGEYAFGFITSTMVLQTDKGDEELCSVYVPTNH 182
S V T D N AFKEVAII HPRVGEYAFGFITST+VLQTDKGDEELCSVYVPTNH
Sbjct: 590 SKQVSTAISPDQNTTAFKEVAIIRHPRVGEYAFGFITSTVVLQTDKGDEELCSVYVPTNH 411
Query: 183 LYIGDIFLVNSAEIIRPNLSIREGIEIIVSGGMTMPQVIMSLEPTPRKSQNVRLDRVRT 359
LYIGDIFL+NS EIIRPNLSIREGIEIIVSGGMTMPQVI SL+P PRKSQ++RL+R+ T
Sbjct: 410 LYIGDIFLLNSEEIIRPNLSIREGIEIIVSGGMTMPQVIASLDPIPRKSQSIRLNRIMT 234
Score = 186 bits (401), Expect = 1e-046
Identities = 82/119 (68%), Positives = 96/119 (80%)
Frame = -3 / +1
Query: 358 VLTLSKRTFWLFRGVGSSDMITCGIVIPPETIISMPSRIDKLGLIISAEFTKKMSPIYK* 179
V+ L +R WLF G+GSSD ITCG+VIPPETIIS+PSR+DK GL+IS+EF++ +SPIY+*
Sbjct: 235 VIILFRRMLWLFLGMGSSDAITCGMVIPPETIISIPSRMDKFGLMISSEFSRNISPIYR* 414
Query: 178 LVGT*TLHNSSSPLSV*RTMVDVMNPNAYSPTRG*LMIATSLNAXXFXSXXXXVXTXXD 2
VGT*TLHNSSSPLSV RT VDV+NPNAYSPTRG +IATSLNA F S V T D
Sbjct: 415 FVGT*TLHNSSSPLSVWRTTVDVINPNAYSPTRGCRIIATSLNAVVF*SGEMAVLTCFD 591
>gb|BI948762.1|BI948762 HVSMEl0010L20f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0010L20f, mRNA sequence
Length = 834
Score = 221 bits (476), Expect = 5e-057
Identities = 96/121 (79%), Positives = 102/121 (84%)
Frame = +3 / +2
Query: 3 SXXVXTXXXXDXNXXAFKEVAIISHPRVGEYAFGFITSTMVLQTDKGDEELCSVYVPTNH 182
S V T D N AFKEVAIISHPR GEYAFGFITS+M+LQTDKGDEELCSVYVPTNH
Sbjct: 203 SKQVSTAVSPDQNTTAFKEVAIISHPRAGEYAFGFITSSMILQTDKGDEELCSVYVPTNH 382
Query: 183 LYIGDIFLVNSAEIIRPNLSIREGIEIIVSGGMTMPQVIMSLEPTPRKSQNVRLDRVRTV 362
L IGDIFLVNSAEIIRPNLSIREGIEIIVSGGMTMP+VI +L P P ++Q RLDRV TV
Sbjct: 383 LCIGDIFLVNSAEIIRPNLSIREGIEIIVSGGMTMPEVITALGPAPDENQGARLDRVVTV 562
Query: 363 * 365
*
Sbjct: 563 * 565
Score = 187 bits (402), Expect = 8e-047
Identities = 85/121 (70%), Positives = 97/121 (80%)
Frame = -3 / -1
Query: 364 HTVLTLSKRTFWLFRGVGSSDMITCGIVIPPETIISMPSRIDKLGLIISAEFTKKMSPIY 185
HTV TLSKR W G G +IT G+VIPPETIIS+PSR+D+LGLIISAEFTKK+SPI+
Sbjct: 564 HTVTTLSKRAPWFSSGAGPRAVITSGMVIPPETIISIPSRMDRLGLIISAEFTKKISPIH 385
Query: 184 K*LVGT*TLHNSSSPLSV*RTMVDVMNPNAYSPTRG*LMIATSLNAXXFXSXXXXVXTXX 5
+*LVGT*TLH+SSSPLSV*R M+DV+NPNAYSP RG L+IATSLNA F S V T
Sbjct: 384 R*LVGT*TLHSSSSPLSV*RIMLDVINPNAYSPARGWLIIATSLNAVVF*SGETAVLTCF 205
Query: 4 D 2
D
Sbjct: 204 D 202
Score = 145 bits (311), Expect = 3e-034
Identities = 58/95 (61%), Positives = 68/95 (71%)
Frame = -2 / -3
Query: 296 HLRXXXXXXXNYFYAFTNRQIGPYNFGGVYQKDVTNI*MIGWHINTTQFFITFVCLKNHG 117
HLR NY Y F+N Q+GPYN V+QKD+TN *MIGWHI+TTQFFITFV LKNH
Sbjct: 496 HLRHGHSSRNNYLYPFSNGQVGPYNLCRVHQKDITNT*MIGWHIDTTQFFITFVSLKNHA 317
Query: 116 *CYESKCIFTNTGMTNDCYFFECXXIXIXXXXSXN 12
CY+SKC+FT+TGM N C+FF+C I I S N
Sbjct: 316 RCYKSKCVFTSTGMANYCHFFKCCCILIW*NSSAN 212
Score = 138 bits (297), Expect = 2e-032
Identities = 71/119 (59%), Positives = 75/119 (63%)
Frame = -1 / -2
Query: 357 SSLCLNGRSGSSEVLVPVT*SPAA*SFLLKQLFLCLHE*TNWAL*FRRSLPKRCHQYIND 178
S LCLNG GS V SP A SFL KQL L L E T WAL* +S PKR HQYI+D
Sbjct: 557 SPLCLNGPPGSHLARVLELLSPPAWSFLQKQLSLSLLEWTGWAL*SLQSSPKRYHQYIDD 378
Query: 177 WLAHKHYTILHHLCLSEEPWLML*IQMHIHQHGDDXXXXXL*MLXXXDLXXXXXXXALM 1
WLAH+HYT+LHHLC SEE ML*IQM IHQHGD L*ML DL ALM
Sbjct: 377 WLAHRHYTVLHHLCQSEESCSML*IQMRIHQHGDG*LLPLL*MLLYFDLVKQQC*LALM 201
Score = 136 bits (291), Expect = 2e-031
Identities = 65/99 (65%), Positives = 69/99 (69%)
Frame = +1 / +3
Query: 1 HQXXXXLXXXQIXXXXHSKK*QSLVIPVLVNMHLDS*HQPWFFRQTKVMKNCVVFMCQPI 180
HQ L QI H KK Q L IPVLVN HLD *H+ FFR TKVMKNCVV MCQPI
Sbjct: 201 HQSKLALLFHQIKIQQHLKKWQ*LAIPVLVNTHLDL*HRA*FFRLTKVMKNCVVSMCQPI 380
Query: 181 IYILVTSFW*TPPKL*GPICLFVKA*K*LFQEE*LCRR* 297
IY+LV SFW*T +L*GP C F K *+*LF EE* CRR*
Sbjct: 381 IYVLVISFW*TLQRL*GPTCPFEKG*R*LFLEE*PCRR* 497
Score = 112 bits (239), Expect = 2e-024
Identities = 51/78 (65%), Positives = 60/78 (76%)
Frame = +2 / +1
Query: 125 SSDRQR**RIV*CLCANQSFIYW*HLFGKLRRNYKAQFVYS*RHRNNCFRRNDYAAGDHV 304
SSD QR**R V*CLCANQS +YW*+LFG+L R+YKAQ V+S R R+NCF RND+A GD+
Sbjct: 325 SSD*QR**RTV*CLCANQSSMYW*YLFGELCRDYKAQPVHSRRDRDNCFWRNDHAGGDNS 504
Query: 305 TGTNTSEEPERPFRQSED 358
+ T EP PFRQS D
Sbjct: 505 SRTRAR*EPGGPFRQSGD 558
>gb|CB858531.1|CB858531 HI07G08w HI Hordeum vulgare subsp. vulgare cDNA clone HI07G08
3-PRIME, mRNA sequence
Length = 580
Score = 181 bits (389), Expect = 5e-045
Identities = 77/90 (85%), Positives = 83/90 (92%)
Frame = +3 / -3
Query: 96 AFGFITSTMVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSAEIIRPNLSIREGIEIIVSG 275
AFGFITS+M+LQTDKGDEELCSVYVPTNHLYIGDIFLVNSAEIIRPNLSIREGIEIIVSG
Sbjct: 578 AFGFITSSMILQTDKGDEELCSVYVPTNHLYIGDIFLVNSAEIIRPNLSIREGIEIIVSG 399
Query: 276 GMTMPQVIMSLEPTPRKSQNVRLDRVRTV* 365
GMTMPQVI +L P P K+Q RL+R+ TV*
Sbjct: 398 GMTMPQVITALGPAPDKNQGTRLNRMMTV* 309
Score = 156 bits (336), Expect = 1e-037
Identities = 67/90 (74%), Positives = 78/90 (86%)
Frame = -3 / +1
Query: 364 HTVLTLSKRTFWLFRGVGSSDMITCGIVIPPETIISMPSRIDKLGLIISAEFTKKMSPIY 185
HTV+ L KR W G G +ITCG+VIPPETIIS+PSR+D+LGLIISAEFTKK+SPIY
Sbjct: 310 HTVIILFKRVPWFLSGAGPRAVITCGMVIPPETIISIPSRMDRLGLIISAEFTKKISPIY 489
Query: 184 K*LVGT*TLHNSSSPLSV*RTMVDVMNPNA 95
+*LVGT*TLH+SSSPLSV*R M+DV+NPNA
Sbjct: 490 R*LVGT*TLHSSSSPLSV*RIMLDVINPNA 579
Score = 127 bits (273), Expect = 5e-029
Identities = 59/87 (67%), Positives = 63/87 (72%)
Frame = -1 / +2
Query: 357 SSLCLNGRSGSSEVLVPVT*SPAA*SFLLKQLFLCLHE*TNWAL*FRRSLPKRCHQYIND 178
SS CLNG GS V SPAA SFL KQLFL L E T WAL*F +S PKR HQYI+D
Sbjct: 317 SSFCLNGYPGSYLARVLELLSPAAWSFLQKQLFLSLLEWTGWAL*FLQSSPKRYHQYIDD 496
Query: 177 WLAHKHYTILHHLCLSEEPWLML*IQM 97
WLAH+HYT+LHHLC SEE ML*IQM
Sbjct: 497 WLAHRHYTVLHHLCQSEESCSML*IQM 577
Score = 119 bits (255), Expect = 2e-026
Identities = 47/67 (70%), Positives = 53/67 (79%)
Frame = -2 / +3
Query: 296 HLRXXXXXXXNYFYAFTNRQIGPYNFGGVYQKDVTNI*MIGWHINTTQFFITFVCLKNHG 117
HLR NYFY F+N Q+GPYNF V+QKD+TNI*MIGWHI+TTQFFITFV LKNH
Sbjct: 378 HLRHGHSSRNNYFYPFSNGQVGPYNFCRVHQKDITNI*MIGWHIDTTQFFITFVSLKNHA 557
Query: 116 *CYESKC 96
CY+SKC
Sbjct: 558 RCYKSKC 578
Score = 119 bits (254), Expect = 2e-026
Identities = 53/78 (67%), Positives = 62/78 (79%)
Frame = +2 / -2
Query: 125 SSDRQR**RIV*CLCANQSFIYW*HLFGKLRRNYKAQFVYS*RHRNNCFRRNDYAAGDHV 304
SSD QR**R V*CLCANQS IYW*+LFG+L RNYKAQ V+S R RNNCF RND+AAGD+
Sbjct: 549 SSD*QR**RTV*CLCANQSSIYW*YLFGELCRNYKAQPVHSRRDRNNCFWRNDHAAGDNS 370
Query: 305 TGTNTSEEPERPFRQSED 358
+ T EP PF+Q++D
Sbjct: 369 SRTRAR*EPGYPFKQNDD 316
Score = 111 bits (236), Expect = 6e-024
Identities = 52/67 (77%), Positives = 53/67 (79%)
Frame = +1 / -1
Query: 97 HLDS*HQPWFFRQTKVMKNCVVFMCQPIIYILVTSFW*TPPKL*GPICLFVKA*K*LFQE 276
HLD *H+ FFR TKVMKNCVV MCQPIIYILV SFW*T KL*GP C F K *K*LF E
Sbjct: 577 HLDL*HRA*FFRLTKVMKNCVVSMCQPIIYILVISFW*TLQKL*GPTCPFEKG*K*LFLE 398
Query: 277 E*LCRR* 297
E* CRR*
Sbjct: 397 E*PCRR* 377
>gb|BJ455168.1|BJ455168 BJ455168 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak35h23 3', mRNA sequence
Length = 697
Score = 169 bits (364), Expect = 1e-041
Identities = 67/106 (63%), Positives = 83/106 (78%)
Frame = +3 / -2
Query: 3 SXXVXTXXXXDXNXXAFKEVAIISHPRVGEYAFGFITSTMVLQTDKGDEELCSVYVPTNH 182
S + D N AFKE II HPR+GEYAFGFITS++ LQ+ G E+L VYVPTNH
Sbjct: 531 SKQISAAISPDQNKQAFKEAVIIRHPRIGEYAFGFITSSVSLQSYSGQEDLYCVYVPTNH 352
Query: 183 LYIGDIFLVNSAEIIRPNLSIREGIEIIVSGGMTMPQVIMSLEPTP 320
LYIGDIF+VNS ++IRPNLS+REGIEI+VSGGM+MPQ++ +L+P P
Sbjct: 351 LYIGDIFMVNSKDVIRPNLSVREGIEIVVSGGMSMPQILSTLDPHP 214
Score = 101 bits (215), Expect = 5e-021
Identities = 54/94 (57%), Positives = 61/94 (64%)
Frame = -3 / +2
Query: 319 GVGSSDMITCGIVIPPETIISMPSRIDKLGLIISAEFTKKMSPIYK*LVGT*TLHNSSSP 140
G GS GI IPPET ISMPSR ++LGLI S EFT K+SPI + LVGT T SS P
Sbjct: 215 GCGSRVDKIWGIDIPPETTISMPSRTERLGLITSFEFTMKISPI*RWLVGTYTQ*RSS*P 394
Query: 139 LSV*RTMVDVMNPNAYSPTRG*LMIATSLNAXXF 38
+ R +VMNPNAYSP RG M+ SLNA F
Sbjct: 395 E*LWRETDEVMNPNAYSPIRGCRMMTASLNACLF 496
>gb|BJ473611.1|BJ473611 BJ473611 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal15k07 3', mRNA sequence
Length = 699
Score = 169 bits (364), Expect = 1e-041
Identities = 67/106 (63%), Positives = 83/106 (78%)
Frame = +3 / -1
Query: 3 SXXVXTXXXXDXNXXAFKEVAIISHPRVGEYAFGFITSTMVLQTDKGDEELCSVYVPTNH 182
S + D N AFKE II HPR+GEYAFGFITS++ LQ+ G E+L VYVPTNH
Sbjct: 531 SKQISAAISPDQNKQAFKEAVIIRHPRIGEYAFGFITSSVSLQSYSGQEDLYCVYVPTNH 352
Query: 183 LYIGDIFLVNSAEIIRPNLSIREGIEIIVSGGMTMPQVIMSLEPTP 320
LYIGDIF+VNS ++IRPNLS+REGIEI+VSGGM+MPQ++ +L+P P
Sbjct: 351 LYIGDIFMVNSKDVIRPNLSVREGIEIVVSGGMSMPQILSTLDPHP 214
Score = 101 bits (215), Expect = 5e-021
Identities = 54/94 (57%), Positives = 61/94 (64%)
Frame = -3 / +2
Query: 319 GVGSSDMITCGIVIPPETIISMPSRIDKLGLIISAEFTKKMSPIYK*LVGT*TLHNSSSP 140
G GS GI IPPET ISMPSR ++LGLI S EFT K+SPI + LVGT T SS P
Sbjct: 215 GCGSRVDKIWGIDIPPETTISMPSRTERLGLITSFEFTMKISPI*RWLVGTYTQ*RSS*P 394
Query: 139 LSV*RTMVDVMNPNAYSPTRG*LMIATSLNAXXF 38
+ R +VMNPNAYSP RG M+ SLNA F
Sbjct: 395 E*LWRETDEVMNPNAYSPIRGCRMMTASLNACLF 496
>gb|BI780615.2|BI780615 EBes01_SQ001_H19_R embryo sac, 4-6 DPA, no treatment, cv Optic,
EBes01 Hordeum vulgare subsp. vulgare cDNA clone
EBes01_SQ001_H19 5', mRNA sequence
Length = 527
Score = 156 bits (336), Expect = 1e-037
Identities = 63/96 (65%), Positives = 75/96 (78%)
Frame = +3 / +2
Query: 3 SXXVXTXXXXDXNXXAFKEVAIISHPRVGEYAFGFITSTMVLQTDKGDEELCSVYVPTNH 182
S + D N AFKE II HPR+GEYAFGFITS++ LQ+ G E+L VYVPTNH
Sbjct: 239 SKQISAAISPDQNKQAFKEAVIIRHPRIGEYAFGFITSSVSLQSYSGQEDLYCVYVPTNH 418
Query: 183 LYIGDIFLVNSAEIIRPNLSIREGIEIIVSGGMTMP 290
LYIGDIF+VNS ++IRPNLS+REGIEI+VSGGM+MP
Sbjct: 419 LYIGDIFMVNSKDVIRPNLSVREGIEIVVSGGMSMP 526
Score = 100 bits (213), Expect = 1e-020
Identities = 51/84 (60%), Positives = 58/84 (69%)
Frame = -3 / -3
Query: 289 GIVIPPETIISMPSRIDKLGLIISAEFTKKMSPIYK*LVGT*TLHNSSSPLSV*RTMVDV 110
GI IPPET ISMPSR ++LGLI S EFT K+SPI + LVGT T SS P + R +V
Sbjct: 525 GIDIPPETTISMPSRTERLGLITSFEFTMKISPI*RWLVGTYTQ*RSS*PE*LWRETDEV 346
Query: 109 MNPNAYSPTRG*LMIATSLNAXXF 38
MNPNAYSP RG M+ SLNA F
Sbjct: 345 MNPNAYSPIRGCRMMTASLNACLF 274
>gb|BJ453298.1|BJ453298 BJ453298 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak42g23 5', mRNA sequence
Length = 633
Score = 147 bits (315), Expect = 8e-035
Identities = 62/76 (81%), Positives = 64/76 (84%)
Frame = +3 / +2
Query: 3 SXXVXTXXXXDXNXXAFKEVAIISHPRVGEYAFGFITSTMVLQTDKGDEELCSVYVPTNH 182
S V T D N AFKEVAII HPRVGEYAFGFITST+VLQTDKGDEELCSVYVPTNH
Sbjct: 404 SKQVSTAISPDQNTTAFKEVAIIRHPRVGEYAFGFITSTVVLQTDKGDEELCSVYVPTNH 583
Query: 183 LYIGDIFLVNSAEIIR 230
LYIGDIFL+NS EIIR
Sbjct: 584 LYIGDIFLLNSEEIIR 631
Score = 115 bits (245), Expect = 4e-025
Identities = 53/77 (68%), Positives = 61/77 (79%)
Frame = -3 / -1
Query: 232 GLIISAEFTKKMSPIYK*LVGT*TLHNSSSPLSV*RTMVDVMNPNAYSPTRG*LMIATSL 53
GL+IS+EF++ +SPIY+* VGT*TLHNSSSPLSV RT VDV+NPNAYSPTRG +IATSL
Sbjct: 633 GLMISSEFSRNISPIYR*FVGT*TLHNSSSPLSVWRTTVDVINPNAYSPTRGCRIIATSL 454
Query: 52 NAXXFXSXXXXVXTXXD 2
NA F S V T D
Sbjct: 453 NAVVF*SGEMAVLTCFD 403
>gb|CV064134.1|CV064134 BNEL98d5 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL98d5 5' similar to unknown
protein, mRNA sequence
Length = 649
Score = 106 bits (227), Expect = 1e-022
Identities = 44/57 (77%), Positives = 46/57 (80%)
Frame = +3 / +2
Query: 3 SXXVXTXXXXDXNXXAFKEVAIISHPRVGEYAFGFITSTMVLQTDKGDEELCSVYVP 173
S V T D N AFKEVAIISHPR GEYAFGFITS+M+LQTDKGDEELCSVYVP
Sbjct: 479 SKQVSTAVSPDQNTTAFKEVAIISHPRAGEYAFGFITSSMILQTDKGDEELCSVYVP 649
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 324,408,272
Number of Sequences: 312970
Number of extensions: 4784703
Number of successful extensions: 33194
Number of sequences better than 1.0e-020: 11
length of database: 58,378,179
effective HSP length: 51
effective length of database: 42,416,709
effective search space used: 8525758509
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)