TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3311938.2.2
(860 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB881182.1|CB881182 HM09A07w HM Hordeum vulgare subsp. v... 134 2e-049
gb|BF622288.3|BF622288 HVSMEa0002I16f Hordeum vulgare seedl... 107 3e-043
gb|BM442635.2|BM442635 EBan01_SQ003_L19_R anther, yellow st... 114 4e-041
gb|BQ753409.1|BQ753409 EBan01_SQ004_D03_R anther, yellow st... 114 4e-038
gb|AV917139.1|AV917139 AV917139 K. Sato unpublished cDNA li... 98 5e-038
gb|BI956772.1|BI956772 HVSMEn0005E06f Hordeum vulgare rachi... 105 9e-038
gb|BQ759881.1|BQ759881 EBpi05_SQ004_P16_R pistil, 8 DPA, no... 104 9e-038
gb|CK122346.1|CK122346 BES1824102p12 BES1824 Hordeum vulgar... 95 2e-035
gb|BM097618.2|BM097618 EBem04_SQ002_D15_R embryo, 12 DPA, n... 105 3e-035
gb|BF254126.2|BF254126 HVSMEf0003B13f Hordeum vulgare seedl... 98 5e-035
gb|BF628930.2|BF628930 HVSMEb0009C23f Hordeum vulgare seedl... 100 2e-033
gb|CK123980.1|CK123980 BES1824106f16 BES1824 Hordeum vulgar... 98 3e-033
gb|BI959138.1|BI959138 HVSMEn0018F10f Hordeum vulgare rachi... 105 3e-033
gb|CV058074.1|CV058074 BNEL34a7 Barley EST endosperm librar... 70 4e-033
gb|BF260026.3|BF260026 HVSMEf0020O13f Hordeum vulgare seedl... 100 2e-032
gb|BM442090.2|BM442090 EBan01_SQ002_C16_R anther, yellow st... 133 1e-031
gb|BE060246.3|BE060246 HVSMEg0011L08f Hordeum vulgare pre-a... 80 6e-031
gb|BQ468475.1|BQ468475 HM01F21T HM Hordeum vulgare subsp. v... 105 6e-031
gb|CB883976.1|CB883976 HM06N05r HM Hordeum vulgare subsp. v... 105 6e-031
gb|BE230894.2|BE230894 HVSMEg0001I02f Hordeum vulgare pre-a... 108 9e-031
gb|CV054003.1|CV054003 BNEL105f8 Barley EST endosperm libra... 105 3e-030
gb|CV063217.1|CV063217 BNEL87h3 Barley EST endosperm librar... 105 4e-030
gb|BE196421.3|BE196421 HVSMEh0092D24f Hordeum vulgare 5-45 ... 105 7e-030
gb|CK122737.1|CK122737 BES1824105j22 BES1824 Hordeum vulgar... 98 1e-029
gb|BQ469137.1|BQ469137 HM03I08r HM Hordeum vulgare subsp. v... 105 3e-029
gb|BI958784.1|BI958784 HVSMEn0016J13f Hordeum vulgare rachi... 105 2e-028
gb|BU995090.1|BU995090 HM09C23r HM Hordeum vulgare subsp. v... 105 2e-028
gb|CB881625.1|CB881625 HM10G06w HM Hordeum vulgare subsp. v... 75 2e-028
gb|BU995044.1|BU995044 HM09A07r HM Hordeum vulgare subsp. v... 114 3e-028
gb|CV055940.1|CV055940 BNEL12B5 Barley EST endosperm librar... 74 4e-028
gb|CV063939.1|CV063939 BNEL94h5 Barley EST endosperm librar... 105 5e-028
gb|BU981055.1|BU981055 HA22I03r HA Hordeum vulgare subsp. v... 105 5e-028
gb|BQ458429.1|BQ458429 HA05E07r HA Hordeum vulgare subsp. v... 105 5e-028
gb|BU967134.1|BU967134 HB03G05r BC Hordeum vulgare subsp. v... 105 5e-028
gb|BI959353.1|BI959353 HVSMEn0019F12f Hordeum vulgare rachi... 105 6e-028
gb|BI950777.1|BI950777 HVSMEl0023C15f Hordeum vulgare spike... 77 9e-028
gb|BI957603.1|BI957603 HVSMEn0010F11f Hordeum vulgare rachi... 105 9e-028
gb|BI959698.1|BI959698 HVSMEn0020N13f Hordeum vulgare rachi... 105 2e-027
gb|CB883447.1|CB883447 HQ02E17w HQ Hordeum vulgare subsp. v... 105 3e-027
gb|BQ764421.1|BQ764421 EBan01_SQ005_G21_R anther, yellow st... 114 3e-027
gb|BI960458.1|BI960458 HVSMEn0024K16f Hordeum vulgare rachi... 105 6e-027
gb|BF253787.2|BF253787 HVSMEf0002C01f Hordeum vulgare seedl... 89 6e-027
gb|BI959771.1|BI959771 HVSMEn0021G03f Hordeum vulgare rachi... 105 8e-027
gb|BI956858.1|BI956858 HVSMEn0005K24f Hordeum vulgare rachi... 100 3e-026
gb|CV060611.1|CV060611 BNEL5B4 Barley EST endosperm library... 105 4e-026
gb|AV928430.1|AV928430 AV928430 K. Sato unpublished cDNA li... 100 1e-025
gb|BI959654.1|BI959654 HVSMEn0020K03f Hordeum vulgare rachi... 102 2e-025
gb|BE454367.2|BE454367 HVSMEh0093N18f Hordeum vulgare 5-45 ... 85 2e-025
gb|BI959720.1|BI959720 HVSMEn0020P05f Hordeum vulgare rachi... 105 2e-025
gb|BQ459308.1|BQ459308 HA01I15r HA Hordeum vulgare subsp. v... 74 7e-025
gb|BQ465138.1|BQ465138 HU02M06r HU Hordeum vulgare subsp. v... 98 2e-024
gb|CA019997.1|CA019997 HV14A15r HV Hordeum vulgare subsp. v... 98 2e-024
gb|CV063456.1|CV063456 BNEL8E2 Barley EST endosperm library... 105 3e-024
gb|BJ463021.1|BJ463021 BJ463021 K. Sato unpublished cDNA li... 67 3e-024
gb|BQ753555.1|BQ753555 EBan01_SQ004_J12_R anther, yellow st... 100 5e-024
gb|AL504600.1|AL504600 AL504600 Hordeum vulgare Barke roots... 88 1e-023
gb|BQ767787.1|BQ767787 EBro08_SQ009_H22_R root, 3 week, dro... 100 9e-023
gb|BF256653.2|BF256653 HVSMEf0010J19f Hordeum vulgare seedl... 98 1e-022
gb|CB880524.1|CB880524 HM06N05w HM Hordeum vulgare subsp. v... 75 2e-022
gb|BQ760850.1|BQ760850 EBro03_SQ003_K11_R root, 3 week, wat... 105 2e-022
gb|CV061225.1|CV061225 BNEL66d10 Barley EST endosperm libra... 105 3e-022
gb|CV060955.1|CV060955 BNEL63c5 Barley EST endosperm librar... 55 3e-022
gb|BI949344.1|BI949344 HVSMEl0013G22f Hordeum vulgare spike... 105 3e-022
gb|BG365461.2|BG365461 HVSMEi0002M09f Hordeum vulgare 20 DA... 105 3e-022
gb|BG369408.2|BG369408 HVSMEi0024E17f Hordeum vulgare 20 DA... 105 3e-022
gb|BU981754.1|BU981754 HA24I17r HA Hordeum vulgare subsp. v... 105 3e-022
gb|CA022206.1|CA022206 HZ42H09r HZ Hordeum vulgare subsp. v... 105 3e-022
gb|CB884030.1|CB884030 HM10H05r HM Hordeum vulgare subsp. v... 105 3e-022
gb|CB884057.1|CB884057 HM12C11r HM Hordeum vulgare subsp. v... 105 3e-022
gb|CV054400.1|CV054400 BNEL10B12 Barley EST endosperm libra... 105 3e-022
gb|BQ661443.1|BQ661443 HM03I08u HM Hordeum vulgare subsp. v... 75 4e-022
gb|BQ764067.1|BQ764067 EBro03_SQ006_N05_R root, 3 week, wat... 105 5e-022
gb|BU980984.1|BU980984 HA22E18r HA Hordeum vulgare subsp. v... 61 6e-022
gb|BM098205.2|BM098205 EBpi03_SQ002_N14_R pistil, 4 DPA, no... 61 6e-022
gb|BI959812.1|BI959812 HVSMEn0021L03f Hordeum vulgare rachi... 93 8e-022
gb|AV917082.1|AV917082 AV917082 K. Sato unpublished cDNA li... 86 6e-021
gb|CW512145.1|CW512145 ToNAR_Morex_118b Morex Exon trapped ... 100 8e-021
gb|AV923254.1|AV923254 AV923254 K. Sato unpublished cDNA li... 100 8e-021
gb|CA022237.1|CA022237 HZ42I19r HZ Hordeum vulgare subsp. v... 100 8e-021
gb|CA023986.1|CA023986 HZ48A15r HZ Hordeum vulgare subsp. v... 100 8e-021
>gb|CB881182.1|CB881182 HM09A07w HM Hordeum vulgare subsp. vulgare cDNA clone HM09A07
3-PRIME, mRNA sequence
Length = 680
Score = 134 bits (288), Expect(2) = 2e-049
Identities = 54/107 (50%), Positives = 71/107 (66%)
Frame = +3 / -3
Query: 204 RVKCKYGSKVTFHLEKGCNPNYLALLVKYXXXXXXXXXXXXKEKGSDTYEPLKHSWGAIW 383
+ K G+KV FH+EKG +PNYLAL+VK+ K KG D + LK SWGA+W
Sbjct: 564 KCKYPEGTKVNFHVEKGSSPNYLALVVKFLQGDGDVVAVDIKPKGKDKWIELKESWGAVW 385
Query: 384 RKDSDKPIKGPITVQLTTEGGTKTVYDDVIPAGWKPNTAYTAK*TNQ 524
R D+ + GP +V+ TTEGGTKTV +DVIP GWKP+T+Y K*+ +
Sbjct: 384 RIDTPDKLIGPFSVRYTTEGGTKTVAEDVIPEGWKPDTSYETK*SQE 244
Score = 81.3 bits (171), Expect(2) = 2e-049
Identities = 31/42 (73%), Positives = 38/42 (90%)
Frame = +3 / -3
Query: 96 IAAYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKY 221
IAAYHFDL+G AFG MAKKG+E+KLR AG ++++FRRVKCKY
Sbjct: 678 IAAYHFDLSGHAFGTMAKKGQEQKLRDAGEVEIKFRRVKCKY 553
>gb|BF622288.3|BF622288 HVSMEa0002I16f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0002I16f, mRNA sequence
Length = 851
Score = 107 bits (228), Expect(3) = 3e-043
Identities = 42/59 (71%), Positives = 48/59 (81%)
Frame = +3 / +2
Query: 45 CSGKPVVVYITDMNYEPIAAYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKY 221
CSG P V ITDMNY P++ +HFDL+GTAFGAMAK G E+LR AGIIDMQFRRV C+Y
Sbjct: 239 CSGVPETVIITDMNYYPVSRFHFDLSGTAFGAMAKDGRNEELRHAGIIDMQFRRVPCQY 415
Score = 68.4 bits (143), Expect(3) = 3e-043
Identities = 22/52 (42%), Positives = 35/52 (67%)
Frame = +3 / +2
Query: 354 PLKHSWGAIWRKDSDKPIKGPITVQLTTEGGTKTVYDDVIPAGWKPNTAYTA 509
P+ SWG+IWR D+ +P++GP ++++T E G V D V P W+PN Y++
Sbjct: 587 PMTESWGSIWRMDTRRPMQGPFSLRITNESGKTLVADQVNPGDWEPNEIYSS 742
Score = 38.2 bits (77), Expect(3) = 3e-043
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = +3 / +2
Query: 222 GSKVTFHLEKGCNPNYLALLVKY 290
G VTFH++ G NP YLA+LV+Y
Sbjct: 419 GLTVTFHVQHGSNPYYLAILVEY 487
>gb|BM442635.2|BM442635 EBan01_SQ003_L19_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ003_L19 5', mRNA sequence
Length = 411
Score = 114 bits (243), Expect(2) = 4e-041
Identities = 44/63 (69%), Positives = 53/63 (84%)
Frame = +3 / +3
Query: 33 KPAKCSGKPVVVYITDMNYEPIAAYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVK 212
KP CSG+P +V ITD N EPIAAYHFDL+G AFG MAKKG+E+KLR AG ++++FRRVK
Sbjct: 30 KPEACSGEPTIVTITDKNEEPIAAYHFDLSGHAFGTMAKKGQEQKLRDAGEVEIKFRRVK 209
Query: 213 CKY 221
CKY
Sbjct: 210 CKY 218
Score = 74.4 bits (156), Expect(2) = 4e-041
Identities = 29/64 (45%), Positives = 39/64 (60%)
Frame = +3 / +3
Query: 204 RVKCKYGSKVTFHLEKGCNPNYLALLVKYXXXXXXXXXXXXKEKGSDTYEPLKHSWGAIW 383
+ K G+KV FH+EKG +PNYLAL++K+ K KG D + LK SWGA+W
Sbjct: 207 KCKYPEGTKVNFHVEKGSSPNYLALVIKFLQGDGDVVAVDIKPKGKDKWIELKESWGAVW 386
Query: 384 RKDS 395
R D+
Sbjct: 387 RIDT 398
>gb|BQ753409.1|BQ753409 EBan01_SQ004_D03_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ004_D03 5', mRNA sequence
Length = 677
Score = 114 bits (244), Expect(2) = 4e-038
Identities = 44/63 (69%), Positives = 53/63 (84%)
Frame = +3 / +2
Query: 33 KPAKCSGKPVVVYITDMNYEPIAAYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVK 212
KP CSG+P +V ITD N EPIAAYHFDL+G AFG MAKKG+E+KLR AG ++++FRRVK
Sbjct: 326 KPGACSGEPTIVTITDKNEEPIAAYHFDLSGHAFGTMAKKGQEQKLRDAGEVEIKFRRVK 505
Query: 213 CKY 221
CKY
Sbjct: 506 CKY 514
Score = 63.8 bits (133), Expect(2) = 4e-038
Identities = 26/58 (44%), Positives = 34/58 (58%)
Frame = +3 / +2
Query: 204 RVKCKYGSKVTFHLEKGCNPNYLALLVKYXXXXXXXXXXXXKEKGSDTYEPLKHSWGA 377
+ K G+KV FH+EKG +PNYLAL++K+ K KG D + LK SWGA
Sbjct: 503 KCKYPEGTKVNFHVEKGSSPNYLALVIKFLQGDGDVVAVDIKPKGKDKWIELKESWGA 676
>gb|AV917139.1|AV917139 AV917139 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20o17 5', mRNA sequence
Length = 590
Score = 97.7 bits (207), Expect(3) = 5e-038
Identities = 38/63 (60%), Positives = 47/63 (74%)
Frame = +3 / +1
Query: 33 KPAKCSGKPVVVYITDMNYEPIAAYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVK 212
K CSG+ V ITDMNY P+A YHFDL+GTAFG +AK G ++LR AGIID+QF RV
Sbjct: 7 KHKACSGRQETVMITDMNYYPVAPYHFDLSGTAFGKLAKPGRNDELRHAGIIDIQFTRVA 186
Query: 213 CKY 221
C++
Sbjct: 187 CEF 195
Score = 63.4 bits (132), Expect(3) = 5e-038
Identities = 21/57 (36%), Positives = 35/57 (61%)
Frame = +3 / +1
Query: 333 KGSDTYEPLKHSWGAIWRKDSDKPIKGPITVQLTTEGGTKTVYDDVIPAGWKPNTAY 503
+G + ++ SWG+IWR DS+ ++ P ++++ E G V +VIP W+PNT Y
Sbjct: 325 RGGGRWTRMRESWGSIWRLDSNHRLQAPFSIRIRNESGKTLVARNVIPKNWRPNTFY 495
Score = 35.0 bits (70), Expect(3) = 5e-038
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = +3 / +1
Query: 222 GSKVTFHLEKGCNPNYLALLVKY 290
G KV FH+E+G N Y+A+LV+Y
Sbjct: 199 GLKVGFHVEEGSNAVYMAILVEY 267
>gb|BI956772.1|BI956772 HVSMEn0005E06f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0005E06f, mRNA sequence
Length = 796
Score = 105 bits (224), Expect(2) = 9e-038
Identities = 41/59 (69%), Positives = 48/59 (81%)
Frame = +3 / +1
Query: 45 CSGKPVVVYITDMNYEPIAAYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKY 221
CSG P V ITDMNY P+A YHFDL+GTAFGAMAK G EKLR +GIID+QF+RV C++
Sbjct: 262 CSGNPETVVITDMNYYPVAKYHFDLSGTAFGAMAKPGLSEKLRHSGIIDIQFKRVPCEF 438
Score = 71.6 bits (150), Expect(2) = 9e-038
Identities = 32/75 (42%), Positives = 43/75 (57%)
Frame = +3 / +1
Query: 222 GSKVTFHLEKGCNPNYLALLVKYXXXXXXXXXXXXKEKGSDTYEPLKHSWGAIWRKDSDK 401
G KVTFH+E+G NP Y A+LV+Y E S T+ P++ SWG+I R DS
Sbjct: 442 GLKVTFHVEQGSNPVYFAVLVEYXDGDGDMVQVDLMEANSCTWTPMRESWGSILRLDSGH 621
Query: 402 PIKGPITVQLTTEGG 446
+ P++ L EGG
Sbjct: 622 GWRPPLSFALXNEGG 666
>gb|BQ759881.1|BQ759881 EBpi05_SQ004_P16_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ004_P16 5', mRNA sequence
Length = 500
Score = 104 bits (221), Expect(2) = 9e-038
Identities = 41/94 (43%), Positives = 56/94 (59%)
Frame = +3 / +2
Query: 222 GSKVTFHLEKGCNPNYLALLVKYXXXXXXXXXXXXKEKGSDTYEPLKHSWGAIWRKDSDK 401
G KVTFH+E+G NP Y A+LV+Y E S T+ P++ SWG+IWR DS
Sbjct: 122 GLKVTFHVEQGSNPVYFAVLVEYEDGDGDVVQVDLMEANSGTWTPMRESWGSIWRLDSGH 301
Query: 402 PIKGPITVQLTTEGGTKTVYDDVIPAGWKPNTAY 503
++ P ++++T E G V D VIPA W P+T Y
Sbjct: 302 RLQAPFSMRITNESGKTLVADKVIPANWAPSTFY 403
Score = 73.0 bits (153), Expect(2) = 9e-038
Identities = 28/39 (71%), Positives = 34/39 (87%)
Frame = +3 / +2
Query: 105 YHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKY 221
YHFDL+GTAFGAMAK G EKLR +GIID+QF+RV C++
Sbjct: 2 YHFDLSGTAFGAMAKPGLSEKLRHSGIIDIQFKRVPCEF 118
>gb|CK122346.1|CK122346 BES1824102p12 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010P122 5-PRIME, mRNA sequence
Length = 717
Score = 95.0 bits (201), Expect(3) = 2e-035
Identities = 36/63 (57%), Positives = 47/63 (74%)
Frame = +3 / +1
Query: 33 KPAKCSGKPVVVYITDMNYEPIAAYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVK 212
K CSG+ V ITDMNY P+A YHFDL+GTAFG +AK G ++LR +GIID++F RV
Sbjct: 85 KDQSCSGRTETVIITDMNYYPVAPYHFDLSGTAFGRLAKPGLNDRLRHSGIIDIEFTRVP 264
Query: 213 CKY 221
C++
Sbjct: 265 CEF 273
Score = 64.8 bits (135), Expect(3) = 2e-035
Identities = 21/56 (37%), Positives = 35/56 (62%)
Frame = +3 / +1
Query: 336 GSDTYEPLKHSWGAIWRKDSDKPIKGPITVQLTTEGGTKTVYDDVIPAGWKPNTAY 503
G + ++ SWG++WR DS+ ++ P ++++ E G V + VIPA W+PNT Y
Sbjct: 400 GGGKWTRMRESWGSVWRLDSNHRLQAPFSIRIRNESGKTLVANKVIPANWRPNTFY 567
Score = 27.6 bits (54), Expect(3) = 2e-035
Identities = 15/42 (35%), Positives = 17/42 (40%)
Frame = +1 / +2
Query: 211 SASMDLRSPSTWRRGAXXXXXXXXXXXXXAMATLWRWTSRRR 336
++S RS STWR A AT RWTS R
Sbjct: 266 ASSRGSRSGSTWRSTRTPSTSRCWWSTRTATATWCRWTSWSR 391
>gb|BM097618.2|BM097618 EBem04_SQ002_D15_R embryo, 12 DPA, no treatment, cv Optic, EBem04
Hordeum vulgare subsp. vulgare cDNA clone
EBem04_SQ002_D15 5', mRNA sequence
Length = 477
Score = 105 bits (225), Expect(3) = 3e-035
Identities = 41/59 (69%), Positives = 48/59 (81%)
Frame = +3 / +3
Query: 45 CSGKPVVVYITDMNYEPIAAYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKY 221
CSG P V ITDMNY P++ YHFDL+GTAFGAMAK G ++LR AGIIDMQF+RV C+Y
Sbjct: 63 CSGVPETVIITDMNYYPVSRYHFDLSGTAFGAMAKYGRNDELRHAGIIDMQFKRVPCQY 239
Score = 42.8 bits (87), Expect(3) = 3e-035
Identities = 12/29 (41%), Positives = 23/29 (79%)
Frame = +3 / +3
Query: 348 YEPLKHSWGAIWRKDSDKPIKGPITVQLT 434
+ P++ SWG+IWR D +P++GP ++++T
Sbjct: 387 WTPMRESWGSIWRLDRLRPLQGPFSLRVT 473
Score = 38.2 bits (77), Expect(3) = 3e-035
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = +3 / +3
Query: 222 GSKVTFHLEKGCNPNYLALLVKY 290
G VTF ++ G NPNYLA+LV+Y
Sbjct: 243 GLTVTFRVQHGSNPNYLAILVEY 311
>gb|BF254126.2|BF254126 HVSMEf0003B13f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0003B13f, mRNA sequence
Length = 789
Score = 97.7 bits (207), Expect(3) = 5e-035
Identities = 38/63 (60%), Positives = 47/63 (74%)
Frame = +3 / +2
Query: 33 KPAKCSGKPVVVYITDMNYEPIAAYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVK 212
K CSG+ V ITDMNY P+A YHFDL+GTAFG +AK G ++LR AGIID+QF RV
Sbjct: 146 KHKACSGRQETVMITDMNYYPVAPYHFDLSGTAFGKLAKPGRNDELRHAGIIDIQFTRVA 325
Query: 213 CKY 221
C++
Sbjct: 326 CEF 334
Score = 53.3 bits (110), Expect(3) = 5e-035
Identities = 20/57 (35%), Positives = 32/57 (56%)
Frame = +3 / +2
Query: 333 KGSDTYEPLKHSWGAIWRKDSDKPIKGPITVQLTTEGGTKTVYDDVIPAGWKPNTAY 503
+G + ++ SWG IWR DS+ ++ P ++++ E G V VIP +PNT Y
Sbjct: 464 RGGGRWTRMRESWGFIWRLDSNHRLQAPFSIRIRNESGQTLVAR*VIPKKGRPNTLY 634
Score = 35.0 bits (70), Expect(3) = 5e-035
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = +3 / +2
Query: 222 GSKVTFHLEKGCNPNYLALLVKY 290
G KV FH+E+G N Y+A+LV+Y
Sbjct: 338 GLKVGFHVEEGSNAVYMAILVEY 406
>gb|BF628930.2|BF628930 HVSMEb0009C23f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0009C23f, mRNA sequence
Length = 762
Score = 100 bits (214), Expect(2) = 2e-033
Identities = 40/59 (67%), Positives = 46/59 (77%)
Frame = +3 / +3
Query: 45 CSGKPVVVYITDMNYEPIAAYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKY 221
CSG V ITDMNY P+A YHFDL+GTAFGA+AK G EKLR +GIID+QFRRV C +
Sbjct: 384 CSGNIETVMITDMNYYPVAQYHFDLSGTAFGALAKSGLNEKLRHSGIIDIQFRRVPCNF 560
Score = 61.6 bits (128), Expect(2) = 2e-033
Identities = 23/66 (34%), Positives = 38/66 (57%)
Frame = +3 / +3
Query: 222 GSKVTFHLEKGCNPNYLALLVKYXXXXXXXXXXXXKEKGSDTYEPLKHSWGAIWRKDSDK 401
G K+ FH+ +G N YLA+L++Y K S ++ ++ SWG+IWR DS+
Sbjct: 564 GLKINFHVVEGSNAVYLAVLIEYEDMDGDVIQVDMKGANSGSWMAMRESWGSIWRMDSNH 743
Query: 402 PIKGPI 419
++GP+
Sbjct: 744 RLQGPL 761
>gb|CK123980.1|CK123980 BES1824106f16 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010F166 5-PRIME, mRNA sequence
Length = 750
Score = 97.7 bits (207), Expect(3) = 3e-033
Identities = 38/63 (60%), Positives = 47/63 (74%)
Frame = +3 / +1
Query: 33 KPAKCSGKPVVVYITDMNYEPIAAYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVK 212
K CSG+ V ITDMNY P+A YHFDL+GTAFG +AK G ++LR AGIID+QF RV
Sbjct: 202 KHKACSGRQETVMITDMNYYPVAPYHFDLSGTAFGKLAKPGRNDELRHAGIIDIQFTRVA 381
Query: 213 CKY 221
C++
Sbjct: 382 CEF 390
Score = 47.3 bits (97), Expect(3) = 3e-033
Identities = 16/48 (33%), Positives = 29/48 (60%)
Frame = +3 / +1
Query: 333 KGSDTYEPLKHSWGAIWRKDSDKPIKGPITVQLTTEGGTKTVYDDVIP 476
+G + ++ SWG+IWR DS+ ++ P ++++ E G V +VIP
Sbjct: 520 RGGGRWTRMRESWGSIWRLDSNHRLQAPFSIRIRNESGKTLVARNVIP 663
Score = 35.0 bits (70), Expect(3) = 3e-033
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = +3 / +1
Query: 222 GSKVTFHLEKGCNPNYLALLVKY 290
G KV FH+E+G N Y+A+LV+Y
Sbjct: 394 GLKVGFHVEEGSNAVYMAILVEY 462
>gb|BI959138.1|BI959138 HVSMEn0018F10f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0018F10f, mRNA sequence
Length = 669
Score = 105 bits (224), Expect(3) = 3e-033
Identities = 41/59 (69%), Positives = 48/59 (81%)
Frame = +3 / +3
Query: 45 CSGKPVVVYITDMNYEPIAAYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKY 221
CSG P V ITDMNY P+A YHFDL+GTAFGAMAK G EKLR +GIID+QF+RV C++
Sbjct: 279 CSGNPETVVITDMNYYPVAKYHFDLSGTAFGAMAKPGLSEKLRHSGIIDIQFKRVPCEF 455
Score = 41.8 bits (85), Expect(3) = 3e-033
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = +3 / +3
Query: 222 GSKVTFHLEKGCNPNYLALLVKYXXXXXXXXXXXXKEKGSDTYE 353
G KVTFH+E+G NP Y A+LV+Y E S T++
Sbjct: 459 GLKVTFHVEQGSNPVYFAVLVEYEDGDGDLVQVDLMEANSGTWD 590
Score = 32.7 bits (65), Expect(3) = 3e-033
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +3 / +1
Query: 354 PLKHSWGAIWRKDSDKPIKGPITV 425
P++ SWG+IWR +S ++ P ++
Sbjct: 592 PMRESWGSIWRVESGHRLQAPFSM 663
>gb|CV058074.1|CV058074 BNEL34a7 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL34a7 5' similar to Oryza sativa
beta-expansin, mRNA sequence
Length = 630
Score = 70.3 bits (147), Expect(3) = 4e-033
Identities = 24/52 (46%), Positives = 34/52 (65%)
Frame = +3 / +3
Query: 354 PLKHSWGAIWRKDSDKPIKGPITVQLTTEGGTKTVYDDVIPAGWKPNTAYTA 509
P+K SWG+IWR D+ P+ GP ++++T E G V D VI WKPN Y++
Sbjct: 285 PMKESWGSIWRMDAHHPMHGPFSLRVTNESGKTLVADQVIXGDWKPNKTYSS 440
Score = 70.3 bits (147), Expect(3) = 4e-033
Identities = 27/38 (71%), Positives = 33/38 (86%)
Frame = +3 / +3
Query: 108 HFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKY 221
HFDL+GTAFGAMAK G ++LR AGII+MQF+RV C+Y
Sbjct: 3 HFDLSGTAFGAMAKYGRNDELRHAGIINMQFKRVPCQY 116
Score = 39.1 bits (79), Expect(3) = 4e-033
Identities = 14/23 (60%), Positives = 19/23 (82%)
Frame = +3 / +3
Query: 222 GSKVTFHLEKGCNPNYLALLVKY 290
G VTFH+E+G NP Y+A+LV+Y
Sbjct: 120 GLTVTFHVEEGSNPFYMAILVEY 188
>gb|BF260026.3|BF260026 HVSMEf0020O13f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0020O13f, mRNA sequence
Length = 535
Score = 100 bits (214), Expect(2) = 2e-032
Identities = 37/94 (39%), Positives = 60/94 (63%)
Frame = +3 / +1
Query: 222 GSKVTFHLEKGCNPNYLALLVKYXXXXXXXXXXXXKEKGSDTYEPLKHSWGAIWRKDSDK 401
G K+ FH+ +G N YLA+L++Y KE S ++ ++ SWG+IWR DS+
Sbjct: 103 GLKINFHVVEGSNAVYLAVLIEYEDMDGDVIQVDMKEANSGSWMAMRESWGSIWRMDSNH 282
Query: 402 PIKGPITVQLTTEGGTKTVYDDVIPAGWKPNTAY 503
++GP ++++T++ G K V ++VIPA W+PNT Y
Sbjct: 283 RLQGPFSMRITSDSGKKLVANNVIPANWRPNTDY 384
Score = 58.3 bits (121), Expect(2) = 2e-032
Identities = 23/33 (69%), Positives = 27/33 (81%)
Frame = +3 / +1
Query: 123 GTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKY 221
GTAFGA+AK G EKLR +GIID+QFRRV C +
Sbjct: 1 GTAFGALAKSGLNEKLRHSGIIDIQFRRVPCNF 99
>gb|BM442090.2|BM442090 EBan01_SQ002_C16_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ002_C16 5', mRNA sequence
Length = 389
Score = 133 bits (284), Expect(2) = 1e-031
Identities = 53/107 (49%), Positives = 70/107 (65%)
Frame = +3 / +2
Query: 204 RVKCKYGSKVTFHLEKGCNPNYLALLVKYXXXXXXXXXXXXKEKGSDTYEPLKHSWGAIW 383
+ K G+KV FH+EKG +PNYLAL++K+ K KG D + LK SWGA+W
Sbjct: 14 KCKYPEGTKVNFHVEKGSSPNYLALVIKFLQGDGDVVAVDIKPKGKDKWIELKESWGAVW 193
Query: 384 RKDSDKPIKGPITVQLTTEGGTKTVYDDVIPAGWKPNTAYTAK*TNQ 524
R D+ + GP +V+ TTEGGTKTV +DVIP GWKP+T Y K*+ +
Sbjct: 194 RIDTPDKLIGPFSVRYTTEGGTKTVAEDVIPEGWKPDTFYETK*SQE 334
Score = 24.0 bits (46), Expect(2) = 1e-031
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3 / +2
Query: 198 FRRVKCKY 221
FRRVKCKY
Sbjct: 2 FRRVKCKY 25
>gb|BE060246.3|BE060246 HVSMEg0011L08f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0011L08f, mRNA sequence
Length = 544
Score = 79.9 bits (168), Expect(3) = 6e-031
Identities = 29/48 (60%), Positives = 39/48 (81%)
Frame = +3 / +2
Query: 78 DMNYEPIAAYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKY 221
DMNY P+A YHFDL+GTAFG +AK G ++LR +GIID++F RV C++
Sbjct: 2 DMNYYPVAPYHFDLSGTAFGRLAKPGLNDRLRHSGIIDIEFTRVPCEF 145
Score = 64.8 bits (135), Expect(3) = 6e-031
Identities = 21/56 (37%), Positives = 35/56 (62%)
Frame = +3 / +2
Query: 336 GSDTYEPLKHSWGAIWRKDSDKPIKGPITVQLTTEGGTKTVYDDVIPAGWKPNTAY 503
G + ++ SWG++WR DS+ ++ P ++++ E G V + VIPA W+PNT Y
Sbjct: 272 GGGKWTRMRESWGSVWRLDSNHRLQAPFSIRIRNESGKTLVANKVIPANWRPNTFY 439
Score = 27.6 bits (54), Expect(3) = 6e-031
Identities = 15/42 (35%), Positives = 17/42 (40%)
Frame = +1 / +3
Query: 211 SASMDLRSPSTWRRGAXXXXXXXXXXXXXAMATLWRWTSRRR 336
++S RS STWR A AT RWTS R
Sbjct: 138 ASSRGSRSGSTWRSTRTPSTSRCWWSTRTATATWCRWTSWSR 263
>gb|BQ468475.1|BQ468475 HM01F21T HM Hordeum vulgare subsp. vulgare cDNA clone HM01F21
5-PRIME, mRNA sequence
Length = 650
Score = 105 bits (224), Expect(2) = 6e-031
Identities = 40/63 (63%), Positives = 48/63 (76%)
Frame = +3 / +2
Query: 33 KPAKCSGKPVVVYITDMNYEPIAAYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVK 212
KP CS KP+ V+ITD NYEPIA YH DL+G AFGAMA G E+ LR G +++QFRRV+
Sbjct: 350 KPPPCSDKPITVFITDKNYEPIAPYHIDLSGKAFGAMATAGNEQTLRSFGELELQFRRVR 529
Query: 213 CKY 221
CKY
Sbjct: 530 CKY 538
Score = 48.7 bits (100), Expect(2) = 6e-031
Identities = 19/29 (65%), Positives = 23/29 (79%)
Frame = +3 / +2
Query: 204 RVKCKYGSKVTFHLEKGCNPNYLALLVKY 290
R K G+KVTFH+E G NPNYLA+LVK+
Sbjct: 527 RCKYAPGTKVTFHVETGSNPNYLAILVKF 613
>gb|CB883976.1|CB883976 HM06N05r HM Hordeum vulgare subsp. vulgare cDNA clone HM06N05
5-PRIME, mRNA sequence
Length = 616
Score = 105 bits (224), Expect(2) = 6e-031
Identities = 40/63 (63%), Positives = 48/63 (76%)
Frame = +3 / +2
Query: 33 KPAKCSGKPVVVYITDMNYEPIAAYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVK 212
KP CS KP+ V+ITD NYEPIA YH DL+G AFGAMA G E+ LR G +++QFRRV+
Sbjct: 329 KPPPCSDKPITVFITDKNYEPIAPYHIDLSGKAFGAMATAGNEQTLRSFGELELQFRRVR 508
Query: 213 CKY 221
CKY
Sbjct: 509 CKY 517
Score = 48.7 bits (100), Expect(2) = 6e-031
Identities = 19/29 (65%), Positives = 23/29 (79%)
Frame = +3 / +2
Query: 204 RVKCKYGSKVTFHLEKGCNPNYLALLVKY 290
R K G+KVTFH+E G NPNYLA+LVK+
Sbjct: 506 RCKYAPGTKVTFHVETGSNPNYLAILVKF 592
>gb|BE230894.2|BE230894 HVSMEg0001I02f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0001I02f, mRNA sequence
Length = 606
Score = 108 bits (230), Expect(2) = 9e-031
Identities = 42/63 (66%), Positives = 52/63 (82%)
Frame = +3 / +1
Query: 33 KPAKCSGKPVVVYITDMNYEPIAAYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVK 212
KP CSG+P +V ITD N EPIAAYHFDL+G AFG MAK+G+ +KLR AG ++++FRRVK
Sbjct: 301 KPEACSGEPTIVTITDKNEEPIAAYHFDLSGHAFGTMAKEGQ*QKLRDAGEVEIKFRRVK 480
Query: 213 CKY 221
CKY
Sbjct: 481 CKY 489
Score = 45.5 bits (93), Expect(2) = 9e-031
Identities = 17/29 (58%), Positives = 23/29 (79%)
Frame = +3 / +1
Query: 204 RVKCKYGSKVTFHLEKGCNPNYLALLVKY 290
+ K G+KV FH+EKG +PNYLAL+VK+
Sbjct: 478 KCKYPEGTKVNFHVEKGSSPNYLALVVKF 564
>gb|CV054003.1|CV054003 BNEL105f8 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL105f8 5' similar to Oryza sativa
beta-expansin, mRNA sequence
Length = 702
Score = 105 bits (224), Expect(3) = 3e-030
Identities = 40/59 (67%), Positives = 49/59 (83%)
Frame = +3 / +3
Query: 45 CSGKPVVVYITDMNYEPIAAYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKY 221
CSG P V ITDMNY+P++ YHFDL+GTAFGAMAK G ++LR AGII+MQF+RV C+Y
Sbjct: 321 CSGVPKTVIITDMNYDPVSRYHFDLSGTAFGAMAKYGRNDELRHAGIINMQFKRVPCQY 497
Score = 39.1 bits (79), Expect(3) = 3e-030
Identities = 14/23 (60%), Positives = 19/23 (82%)
Frame = +3 / +3
Query: 222 GSKVTFHLEKGCNPNYLALLVKY 290
G VTFH+E+G NP Y+A+LV+Y
Sbjct: 501 GLTVTFHVEEGSNPFYMAILVEY 569
Score = 25.4 bits (49), Expect(3) = 3e-030
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +3 / +3
Query: 354 PLKHSWGAIWR 386
P+K SW +IWR
Sbjct: 666 PMKESWXSIWR 698
>gb|CV063217.1|CV063217 BNEL87h3 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL87h3 5' similar to Oryza sativa
beta-expansin, mRNA sequence
Length = 701
Score = 105 bits (224), Expect(3) = 4e-030
Identities = 40/59 (67%), Positives = 49/59 (83%)
Frame = +3 / +3
Query: 45 CSGKPVVVYITDMNYEPIAAYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKY 221
CSG P V ITDMNY+P++ YHFDL+GTAFGAMAK G ++LR AGII+MQF+RV C+Y
Sbjct: 327 CSGVPKTVIITDMNYDPVSRYHFDLSGTAFGAMAKYGRNDELRHAGIINMQFKRVPCQY 503
Score = 37.7 bits (76), Expect(3) = 4e-030
Identities = 13/20 (65%), Positives = 18/20 (90%)
Frame = +3 / +3
Query: 231 VTFHLEKGCNPNYLALLVKY 290
VTFH+E+G NP Y+A+LV+Y
Sbjct: 516 VTFHVEEGSNPFYMAILVEY 575
Score = 26.3 bits (51), Expect(3) = 4e-030
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +3 / +3
Query: 354 PLKHSWGAIW 383
P+K SWG+IW
Sbjct: 672 PMKESWGSIW 701
>gb|BE196421.3|BE196421 HVSMEh0092D24f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0092D24f, mRNA sequence
Length = 901
Score = 105 bits (224), Expect(3) = 7e-030
Identities = 41/59 (69%), Positives = 48/59 (81%)
Frame = +3 / +1
Query: 45 CSGKPVVVYITDMNYEPIAAYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKY 221
CSG P V ITDMNY P+A YHFDL+GTAFGAMAK G EKLR +GIID+QF+RV C++
Sbjct: 301 CSGNPETVVITDMNYYPVAKYHFDLSGTAFGAMAKPGLSEKLRHSGIIDIQFKRVPCEF 477
Score = 32.2 bits (64), Expect(3) = 7e-030
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +3 / +3
Query: 225 SKVTFHLEKGCNPNYLALLVKY 290
S+VTFH+E+ NP Y A+L +Y
Sbjct: 483 SQVTFHVEQXSNPVYFAVLGEY 548
Score = 30.9 bits (61), Expect(3) = 7e-030
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +3 / +3
Query: 345 TYEPLKHSWGAIWRKDSDKPIKGPIT 422
T+ P++ SWG+IW D ++ P +
Sbjct: 603 TWTPMRESWGSIWGLDFGHRLQAPFS 680
>gb|CK122737.1|CK122737 BES1824105j22 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010J225 5-PRIME, mRNA sequence
Length = 776
Score = 97.7 bits (207), Expect(3) = 1e-029
Identities = 38/63 (60%), Positives = 47/63 (74%)
Frame = +3 / +1
Query: 33 KPAKCSGKPVVVYITDMNYEPIAAYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVK 212
K CSG+ V ITDMNY P+A YHFDL+GTAFG +AK G ++LR AGIID+QF RV
Sbjct: 319 KHKACSGRQETVMITDMNYYPVAPYHFDLSGTAFGKLAKPGRNDELRHAGIIDIQFTRVA 498
Query: 213 CKY 221
C++
Sbjct: 499 CEF 507
Score = 35.0 bits (70), Expect(3) = 1e-029
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3 / +3
Query: 357 LKHSWGAIWRKDSDKPIKGPITVQLTTEGGTK 452
+ SWG+IW DS ++ P ++++ E G K
Sbjct: 663 MPESWGSIWGLDSXNRLQXPXSIRIRNESGKK 758
Score = 35.0 bits (70), Expect(3) = 1e-029
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = +3 / +1
Query: 222 GSKVTFHLEKGCNPNYLALLVKY 290
G KV FH+E+G N Y+A+LV+Y
Sbjct: 511 GLKVGFHVEEGSNAVYMAILVEY 579
>gb|BQ469137.1|BQ469137 HM03I08r HM Hordeum vulgare subsp. vulgare cDNA clone HM03I08
5-PRIME, mRNA sequence
Length = 616
Score = 105 bits (224), Expect(2) = 3e-029
Identities = 40/63 (63%), Positives = 48/63 (76%)
Frame = +3 / +3
Query: 33 KPAKCSGKPVVVYITDMNYEPIAAYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVK 212
KP CS KP+ V+ITD NYEPIA YH DL+G AFGAMA G E+ LR G +++QFRRV+
Sbjct: 360 KPPPCSDKPITVFITDKNYEPIAPYHIDLSGKAFGAMATAGNEQTLRSFGELELQFRRVR 539
Query: 213 CKY 221
CKY
Sbjct: 540 CKY 548
Score = 43.2 bits (88), Expect(2) = 3e-029
Identities = 17/26 (65%), Positives = 20/26 (76%)
Frame = +3 / +3
Query: 204 RVKCKYGSKVTFHLEKGCNPNYLALL 281
R K G+KVTFH+E G NPNYLA+L
Sbjct: 537 RCKYAPGTKVTFHVETGSNPNYLAIL 614
>gb|BI958784.1|BI958784 HVSMEn0016J13f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0016J13f, mRNA sequence
Length = 656
Score = 105 bits (224), Expect(2) = 2e-028
Identities = 41/59 (69%), Positives = 48/59 (81%)
Frame = +3 / +3
Query: 45 CSGKPVVVYITDMNYEPIAAYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKY 221
CSG P V ITDMNY P+A YHFDL+GTAFGAMAK G EKLR +GIID+QF+RV C++
Sbjct: 375 CSGNPETVVITDMNYYPVAKYHFDLSGTAFGAMAKPGLSEKLRHSGIIDIQFKRVPCEF 551
Score = 40.5 bits (82), Expect(2) = 2e-028
Identities = 15/23 (65%), Positives = 19/23 (82%)
Frame = +3 / +3
Query: 222 GSKVTFHLEKGCNPNYLALLVKY 290
G KVTFH+E+G NP Y A+LV+Y
Sbjct: 555 GLKVTFHVEQGSNPVYFAVLVEY 623
>gb|BU995090.1|BU995090 HM09C23r HM Hordeum vulgare subsp. vulgare cDNA clone HM09C23
5-PRIME, mRNA sequence
Length = 653
Score = 105 bits (224), Expect(2) = 2e-028
Identities = 41/59 (69%), Positives = 48/59 (81%)
Frame = +3 / +1
Query: 45 CSGKPVVVYITDMNYEPIAAYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKY 221
CSG P V ITDMNY P+A YHFDL+GTAFGAMAK G EKLR +GIID+QF+RV C++
Sbjct: 397 CSGNPETVVITDMNYYPVAKYHFDLSGTAFGAMAKPGLSEKLRHSGIIDIQFKRVPCEF 573
Score = 40.5 bits (82), Expect(2) = 2e-028
Identities = 15/23 (65%), Positives = 19/23 (82%)
Frame = +3 / +1
Query: 222 GSKVTFHLEKGCNPNYLALLVKY 290
G KVTFH+E+G NP Y A+LV+Y
Sbjct: 577 GLKVTFHVEQGSNPVYFAVLVEY 645
>gb|CB881625.1|CB881625 HM10G06w HM Hordeum vulgare subsp. vulgare cDNA clone HM10G06
3-PRIME, mRNA sequence
Length = 588
Score = 74.8 bits (157), Expect(3) = 2e-028
Identities = 27/50 (54%), Positives = 34/50 (68%)
Frame = +3 / -1
Query: 354 PLKHSWGAIWRKDSDKPIKGPITVQLTTEGGTKTVYDDVIPAGWKPNTAY 503
P+ SWGAIWR D IK P +++LT+E G K + DVIPA WKP+T Y
Sbjct: 372 PMTLSWGAIWRWDGANAIKAPFSIRLTSESGKKLIAQDVIPANWKPDTVY 223
Score = 51.0 bits (105), Expect(3) = 2e-028
Identities = 22/48 (45%), Positives = 28/48 (58%)
Frame = +3 / -1
Query: 204 RVKCKYGSKVTFHLEKGCNPNYLALLVKYXXXXXXXXXXXXKEKGSDT 347
R K G+KVTFH+E G NPNYLA+LVK+ +EK + T
Sbjct: 525 RCKYAPGTKVTFHVETGSNPNYLAILVKFVADDGDIVQMEIQEKSAPT 382
Score = 37.7 bits (76), Expect(3) = 2e-028
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = +3 / -1
Query: 153 GEEEKLRKAGIIDMQFRRVKCKY 221
G E+ LR G +++QFRRV+CKY
Sbjct: 582 GNEQTLRSFGELELQFRRVRCKY 514
>gb|BU995044.1|BU995044 HM09A07r HM Hordeum vulgare subsp. vulgare cDNA clone HM09A07
5-PRIME, mRNA sequence
Length = 628
Score = 114 bits (243), Expect(2) = 3e-028
Identities = 44/63 (69%), Positives = 53/63 (84%)
Frame = +3 / +1
Query: 33 KPAKCSGKPVVVYITDMNYEPIAAYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVK 212
KP CSG+P +V ITD N EPIAAYHFDL+G AFG MAKKG+E+KLR AG ++++FRRVK
Sbjct: 322 KPEACSGEPTIVTITDKNEEPIAAYHFDLSGHAFGTMAKKGQEQKLRDAGEVEIKFRRVK 501
Query: 213 CKY 221
CKY
Sbjct: 502 CKY 510
Score = 94.5 bits (200), Expect(2) = 6e-022
Identities = 42/71 (59%), Positives = 48/71 (67%)
Frame = -2 / -3
Query: 244 KWKVTLDPYLHLTLRNCMSMMPALRNFSSSPFLAMAPNAVPARSKWYAAMGS*FMSVMYT 65
K+ + YLHLT RN +S PA R+F S PFLAM P A P RSKWYAAMGS F+SVM T
Sbjct: 533 KFTLVPSGYLHLTRRNLISTSPASRSFCSWPFLAMVPKAWPDRSKWYAAMGSSFLSVMVT 354
Query: 64 TTGLPEHFAGL 32
G PE +GL
Sbjct: 353 MVGSPEQASGL 321
Score = 30.9 bits (61), Expect(2) = 3e-028
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +3 / +2
Query: 234 TFHLEKGCNPNYLALLVKY 290
T EKG +PNYLAL+VK+
Sbjct: 530 TSTXEKGSSPNYLALVVKF 586
Score = 29.5 bits (58), Expect(2) = 6e-022
Identities = 14/20 (70%), Positives = 15/20 (75%)
Frame = -2 / -2
Query: 286 LTNRAR*LGLHPFSKWKVTL 227
LT RAR*LGL PFS +V L
Sbjct: 582 LTTRAR*LGLEPFSXVEVHL 523
>gb|CV055940.1|CV055940 BNEL12B5 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL12B5 5' similar to Oryza sativa
beta-expansin, mRNA sequence
Length = 614
Score = 74.4 bits (156), Expect(3) = 4e-028
Identities = 25/52 (48%), Positives = 35/52 (67%)
Frame = +3 / -2
Query: 354 PLKHSWGAIWRKDSDKPIKGPITVQLTTEGGTKTVYDDVIPAGWKPNTAYTA 509
P+K SWG+IWR D+ P+ GP ++++T E G V D VIP WKPN Y++
Sbjct: 343 PMKESWGSIWRMDAHHPMHGPFSLRVTNESGKTLVADQVIPGDWKPNKTYSS 188
Score = 49.2 bits (101), Expect(3) = 4e-028
Identities = 19/29 (65%), Positives = 24/29 (82%)
Frame = +3 / -2
Query: 135 GAMAKKGEEEKLRKAGIIDMQFRRVKCKY 221
GAMAK G ++LR AGII+MQF+RV C+Y
Sbjct: 598 GAMAKYGRNDELRHAGIINMQFKRVPCQY 512
Score = 39.1 bits (79), Expect(3) = 4e-028
Identities = 14/23 (60%), Positives = 19/23 (82%)
Frame = +3 / -2
Query: 222 GSKVTFHLEKGCNPNYLALLVKY 290
G VTFH+E+G NP Y+A+LV+Y
Sbjct: 508 GLTVTFHVEEGSNPFYMAILVEY 440
>gb|CV063939.1|CV063939 BNEL94h5 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL94h5 5' similar to Oryza sativa
beta-expansin, mRNA sequence
Length = 661
Score = 105 bits (224), Expect(2) = 5e-028
Identities = 40/59 (67%), Positives = 49/59 (83%)
Frame = +3 / +2
Query: 45 CSGKPVVVYITDMNYEPIAAYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKY 221
CSG P V ITDMNY+P++ YHFDL+GTAFGAMAK G ++LR AGII+MQF+RV C+Y
Sbjct: 320 CSGVPKTVIITDMNYDPVSRYHFDLSGTAFGAMAKYGRNDELRHAGIINMQFKRVPCQY 496
Score = 39.1 bits (79), Expect(2) = 5e-028
Identities = 14/23 (60%), Positives = 19/23 (82%)
Frame = +3 / +2
Query: 222 GSKVTFHLEKGCNPNYLALLVKY 290
G VTFH+E+G NP Y+A+LV+Y
Sbjct: 500 GLTVTFHVEEGSNPFYMAILVEY 568
>gb|BU981055.1|BU981055 HA22I03r HA Hordeum vulgare subsp. vulgare cDNA clone HA22I03
5-PRIME, mRNA sequence
Length = 597
Score = 105 bits (224), Expect(2) = 5e-028
Identities = 40/59 (67%), Positives = 49/59 (83%)
Frame = +3 / +1
Query: 45 CSGKPVVVYITDMNYEPIAAYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKY 221
CSG P V ITDMNY+P++ YHFDL+GTAFGAMAK G ++LR AGII+MQF+RV C+Y
Sbjct: 274 CSGVPKTVIITDMNYDPVSRYHFDLSGTAFGAMAKYGRNDELRHAGIINMQFKRVPCQY 450
Score = 39.1 bits (79), Expect(2) = 5e-028
Identities = 14/23 (60%), Positives = 19/23 (82%)
Frame = +3 / +1
Query: 222 GSKVTFHLEKGCNPNYLALLVKY 290
G VTFH+E+G NP Y+A+LV+Y
Sbjct: 454 GLTVTFHVEEGSNPFYMAILVEY 522
>gb|BQ458429.1|BQ458429 HA05E07r HA Hordeum vulgare subsp. vulgare cDNA clone HA05E07
5-PRIME, mRNA sequence
Length = 504
Score = 105 bits (224), Expect(2) = 5e-028
Identities = 40/59 (67%), Positives = 49/59 (83%)
Frame = +3 / +2
Query: 45 CSGKPVVVYITDMNYEPIAAYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKY 221
CSG P V ITDMNY+P++ YHFDL+GTAFGAMAK G ++LR AGII+MQF+RV C+Y
Sbjct: 212 CSGVPKTVIITDMNYDPVSRYHFDLSGTAFGAMAKYGRNDELRHAGIINMQFKRVPCQY 388
Score = 39.1 bits (79), Expect(2) = 5e-028
Identities = 14/23 (60%), Positives = 19/23 (82%)
Frame = +3 / +2
Query: 222 GSKVTFHLEKGCNPNYLALLVKY 290
G VTFH+E+G NP Y+A+LV+Y
Sbjct: 392 GLTVTFHVEEGSNPFYMAILVEY 460
>gb|BU967134.1|BU967134 HB03G05r BC Hordeum vulgare subsp. vulgare cDNA clone HB03G05
5-PRIME, mRNA sequence
Length = 430
Score = 105 bits (224), Expect(2) = 5e-028
Identities = 40/59 (67%), Positives = 49/59 (83%)
Frame = +3 / +1
Query: 45 CSGKPVVVYITDMNYEPIAAYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKY 221
CSG P V ITDMNY+P++ YHFDL+GTAFGAMAK G ++LR AGII+MQF+RV C+Y
Sbjct: 76 CSGVPKTVIITDMNYDPVSRYHFDLSGTAFGAMAKYGRNDELRHAGIINMQFKRVPCQY 252
Score = 39.1 bits (79), Expect(2) = 5e-028
Identities = 14/23 (60%), Positives = 19/23 (82%)
Frame = +3 / +1
Query: 222 GSKVTFHLEKGCNPNYLALLVKY 290
G VTFH+E+G NP Y+A+LV+Y
Sbjct: 256 GLTVTFHVEEGSNPFYMAILVEY 324
>gb|BI959353.1|BI959353 HVSMEn0019F12f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0019F12f, mRNA sequence
Length = 669
Score = 105 bits (224), Expect(2) = 6e-028
Identities = 41/59 (69%), Positives = 48/59 (81%)
Frame = +3 / +2
Query: 45 CSGKPVVVYITDMNYEPIAAYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKY 221
CSG P V ITDMNY P+A YHFDL+GTAFGAMAK G EKLR +GIID+QF+RV C++
Sbjct: 389 CSGNPETVVITDMNYYPVAKYHFDLSGTAFGAMAKPGLSEKLRHSGIIDIQFKRVPCEF 565
Score = 38.6 bits (78), Expect(2) = 6e-028
Identities = 14/22 (63%), Positives = 19/22 (86%)
Frame = +3 / +1
Query: 225 SKVTFHLEKGCNPNYLALLVKY 290
S+VTFH+E+G NP Y A+LV+Y
Sbjct: 571 SQVTFHVEQGSNPVYFAVLVEY 636
>gb|BI950777.1|BI950777 HVSMEl0023C15f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0023C15f, mRNA sequence
Length = 986
Score = 77.1 bits (162), Expect(2) = 9e-028
Identities = 28/94 (29%), Positives = 48/94 (51%)
Frame = +3 / +3
Query: 222 GSKVTFHLEKGCNPNYLALLVKYXXXXXXXXXXXXKEKGSDTYEPLKHSWGAIWRKDSDK 401
G + F +++G NP Y L+++ KE GS + + WGA+WR ++
Sbjct: 285 GVNIAFKVDQGSNPFYFKTLIEFEDDDGDLKAVALKEAGSGAWTQMTQDWGALWRLNNGN 464
Query: 402 PIKGPITVQLTTEGGTKTVYDDVIPAGWKPNTAY 503
++ P ++QLT++ G K V ++VI A W Y
Sbjct: 465 RLRAPFSLQLTSDSGRKLVINNVILANWNAGATY 566
Score = 66.6 bits (139), Expect(2) = 9e-028
Identities = 27/54 (50%), Positives = 36/54 (66%)
Frame = +3 / +3
Query: 60 VVVYITDMNYEPIAAYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKY 221
V+ ++ N P HFD++GTA GAMAK G +KLR G+I MQ++RV CKY
Sbjct: 120 VITDLSPGNLYPGEPCHFDMSGTALGAMAKPGMADKLRAGGVIRMQYKRVPCKY 281
>gb|BI957603.1|BI957603 HVSMEn0010F11f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0010F11f, mRNA sequence
Length = 630
Score = 105 bits (224), Expect(2) = 9e-028
Identities = 41/59 (69%), Positives = 48/59 (81%)
Frame = +3 / +1
Query: 45 CSGKPVVVYITDMNYEPIAAYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKY 221
CSG P V ITDMNY P+A YHFDL+GTAFGAMAK G EKLR +GIID+QF+RV C++
Sbjct: 337 CSGNPETVVITDMNYYPVAKYHFDLSGTAFGAMAKPGLSEKLRHSGIIDIQFKRVPCEF 513
Score = 38.2 bits (77), Expect(2) = 9e-028
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = +3 / +1
Query: 222 GSKVTFHLEKGCNPNYLALLVKY 290
G KVTFH+E+G NP Y +LV+Y
Sbjct: 517 GLKVTFHVEQGSNPVYFPVLVEY 585
>gb|BI959698.1|BI959698 HVSMEn0020N13f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0020N13f, mRNA sequence
Length = 630
Score = 105 bits (224), Expect(2) = 2e-027
Identities = 41/59 (69%), Positives = 48/59 (81%)
Frame = +3 / +3
Query: 45 CSGKPVVVYITDMNYEPIAAYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKY 221
CSG P V ITDMNY P+A YHFDL+GTAFGAMAK G EKLR +GIID+QF+RV C++
Sbjct: 384 CSGNPETVVITDMNYYPVAKYHFDLSGTAFGAMAKPGLSEKLRHSGIIDIQFKRVPCEF 560
Score = 37.3 bits (75), Expect(2) = 2e-027
Identities = 14/22 (63%), Positives = 18/22 (81%)
Frame = +3 / +3
Query: 222 GSKVTFHLEKGCNPNYLALLVK 287
G KVTFH+E+G NP Y A+LV+
Sbjct: 564 GLKVTFHVEQGSNPVYFAVLVE 629
>gb|CB883447.1|CB883447 HQ02E17w HQ Hordeum vulgare subsp. vulgare cDNA clone HQ02E17
3-PRIME, mRNA sequence
Length = 547
Score = 105 bits (225), Expect(2) = 3e-027
Identities = 41/59 (69%), Positives = 48/59 (81%)
Frame = +3 / +1
Query: 45 CSGKPVVVYITDMNYEPIAAYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKY 221
CSG P V ITDMNY P++ YHFDL+GTAFGAMAK G ++LR AGIIDMQF+RV C+Y
Sbjct: 289 CSGVPETVIITDMNYYPVSRYHFDLSGTAFGAMAKYGRNDELRHAGIIDMQFKRVPCQY 465
Score = 35.9 bits (72), Expect(2) = 3e-027
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = +3 / +1
Query: 222 GSKVTFHLEKGCNPNYLALLVKY 290
G VTF ++ G +PNYLA+LV+Y
Sbjct: 469 GLTVTFRVQHGSHPNYLAILVEY 537
>gb|BQ764421.1|BQ764421 EBan01_SQ005_G21_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ005_G21 5', mRNA sequence
Length = 538
Score = 114 bits (244), Expect(2) = 3e-027
Identities = 45/74 (60%), Positives = 56/74 (75%)
Frame = +3 / +2
Query: 33 KPAKCSGKPVVVYITDMNYEPIAAYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVK 212
KP CSG+P +V ITD N EPIAAYHFDL+G AFG MAKKG+E+KLR AG ++++FRRVK
Sbjct: 266 KPEACSGEPTIVTITDKNEEPIAAYHFDLSGHAFGTMAKKGQEQKLRDAGEVEIKFRRVK 445
Query: 213 CKYGSKVTFHLEKG 254
CKY + +G
Sbjct: 446 CKYPEGTKVNXPRG 487
Score = 27.2 bits (53), Expect(2) = 3e-027
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +3 / +3
Query: 234 TFHLEKGCNPNYL 272
T H+EKG +PNYL
Sbjct: 474 TXHVEKGSSPNYL 512
>gb|BI960458.1|BI960458 HVSMEn0024K16f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0024K16f, mRNA sequence
Length = 677
Score = 105 bits (224), Expect(2) = 6e-027
Identities = 41/59 (69%), Positives = 48/59 (81%)
Frame = +3 / +2
Query: 45 CSGKPVVVYITDMNYEPIAAYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKY 221
CSG P V ITDMNY P+A YHFDL+GTAFGAMAK G EKLR +GIID+QF+RV C++
Sbjct: 389 CSGNPETVVITDMNYYPVAKYHFDLSGTAFGAMAKPGLSEKLRHSGIIDIQFKRVPCEF 565
Score = 35.4 bits (71), Expect(2) = 6e-027
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +3 / +2
Query: 222 GSKVTFHLEKGCNPNYLALLVKY 290
G KVT H+E+G NP Y +LV+Y
Sbjct: 569 GLKVTXHVEQGSNPVYFXVLVEY 637
>gb|BF253787.2|BF253787 HVSMEf0002C01f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0002C01f, mRNA sequence
Length = 823
Score = 89.0 bits (188), Expect(3) = 6e-027
Identities = 34/52 (65%), Positives = 42/52 (80%)
Frame = +3 / +3
Query: 66 VYITDMNYEPIAAYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKY 221
V ITDMNY P+A YHFDL+GTAFG +AK G ++LR AGIID+QF RV C++
Sbjct: 3 VMITDMNYYPVAPYHFDLSGTAFGKLAKPGRNDELRHAGIIDIQFTRVACEF 158
Score = 35.0 bits (70), Expect(3) = 6e-027
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = +3 / +3
Query: 222 GSKVTFHLEKGCNPNYLALLVKY 290
G KV FH+E+G N Y+A+LV+Y
Sbjct: 162 GLKVGFHVEEGSNAVYMAILVEY 230
Score = 34.5 bits (69), Expect(3) = 6e-027
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +3 / +3
Query: 336 GSDTYEPLKHSWGAIWRKDSDKPIKGPITVQLTTEGGTKTVYDDVIP 476
G + P+ SWG+IWR + I+ P ++++ E G + +IP
Sbjct: 291 GGGRWTPMLKSWGSIWRLYYNHGIQTPYSIRIRCEFG*TLIMRILIP 431
>gb|BI959771.1|BI959771 HVSMEn0021G03f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0021G03f, mRNA sequence
Length = 682
Score = 105 bits (224), Expect(2) = 8e-027
Identities = 41/59 (69%), Positives = 48/59 (81%)
Frame = +3 / +3
Query: 45 CSGKPVVVYITDMNYEPIAAYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKY 221
CSG P V ITDMNY P+A YHFDL+GTAFGAMAK G EKLR +GIID+QF+RV C++
Sbjct: 366 CSGNPETVVITDMNYYPVAKYHFDLSGTAFGAMAKPGLSEKLRHSGIIDIQFKRVPCEF 542
Score = 35.0 bits (70), Expect(2) = 8e-027
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = +3 / +2
Query: 225 SKVTFHLEKGCNPNYLALL 281
SKVTFH+E+G NP Y A+L
Sbjct: 548 SKVTFHVEQGSNPVYFAVL 604
>gb|BI956858.1|BI956858 HVSMEn0005K24f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0005K24f, mRNA sequence
Length = 812
Score = 99.6 bits (211), Expect(2) = 3e-026
Identities = 39/56 (69%), Positives = 46/56 (82%)
Frame = +3 / +1
Query: 39 AKCSGKPVVVYITDMNYEPIAAYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRR 206
A CSG P V ITDMNY P++ YHFDL+GTAFGAMAK G+ ++LR AGIIDMQF+R
Sbjct: 223 ATCSGVPETVIITDMNYYPVSRYHFDLSGTAFGAMAKDGQNDELRHAGIIDMQFKR 390
Score = 41.4 bits (84), Expect(2) = 3e-026
Identities = 15/23 (65%), Positives = 19/23 (82%)
Frame = +3 / +3
Query: 222 GSKVTFHLEKGCNPNYLALLVKY 290
G VTFH+E+G NPNYLA+ V+Y
Sbjct: 546 GLSVTFHVEQGSNPNYLAIPVEY 614
>gb|CV060611.1|CV060611 BNEL5B4 Barley EST endosperm library Hordeum vulgare subsp. vulgare
cDNA clone BNEL5B4 5' similar to Oryza sativa
beta-expansin, mRNA sequence
Length = 634
Score = 105 bits (224), Expect(2) = 4e-026
Identities = 40/59 (67%), Positives = 49/59 (83%)
Frame = +3 / +3
Query: 45 CSGKPVVVYITDMNYEPIAAYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKY 221
CSG P V ITDMNY+P++ YHFDL+GTAFGAMAK G ++LR AGII+MQF+RV C+Y
Sbjct: 321 CSGVPKTVIITDMNYDPVSRYHFDLSGTAFGAMAKYGRNDELRHAGIINMQFKRVPCQY 497
Score = 32.7 bits (65), Expect(2) = 4e-026
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +3 / +3
Query: 222 GSKVTFHLEKGCNPNYLALLVKY 290
G VTFH+E+ NP Y+A+L +Y
Sbjct: 501 GLTVTFHVEEXSNPFYMAILGEY 569
>gb|AV928430.1|AV928430 AV928430 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basdg18 3', mRNA sequence
Length = 704
Score = 100 bits (214), Expect(2) = 1e-025
Identities = 37/94 (39%), Positives = 60/94 (63%)
Frame = +3 / -2
Query: 222 GSKVTFHLEKGCNPNYLALLVKYXXXXXXXXXXXXKEKGSDTYEPLKHSWGAIWRKDSDK 401
G K+ FH+ +G N YLA+L++Y KE S ++ ++ SWG+IWR DS+
Sbjct: 643 GLKINFHVVEGSNAVYLAVLIEYEDMDGDVIQVDMKEANSGSWMAMRESWGSIWRMDSNH 464
Query: 402 PIKGPITVQLTTEGGTKTVYDDVIPAGWKPNTAY 503
++GP ++++T++ G K V ++VIPA W+PNT Y
Sbjct: 463 RLQGPFSMRITSDSGKKLVANNVIPANWRPNTDY 362
Score = 35.4 bits (71), Expect(2) = 1e-025
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = +3 / -2
Query: 165 KLRKAGIIDMQFRRVKCKY 221
KLR +GIID+QFRRV C +
Sbjct: 703 KLRHSGIIDIQFRRVPCNF 647
>gb|BI959654.1|BI959654 HVSMEn0020K03f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0020K03f, mRNA sequence
Length = 679
Score = 102 bits (217), Expect(2) = 2e-025
Identities = 40/59 (67%), Positives = 47/59 (79%)
Frame = +3 / +2
Query: 45 CSGKPVVVYITDMNYEPIAAYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKY 221
CSG P V ITDMNY P+A YHFDL+GTAFGAMAK G EKL +GIID+QF+RV C++
Sbjct: 383 CSGNPETVVITDMNYYPVAKYHFDLSGTAFGAMAKPGLSEKLPHSGIIDIQFKRVPCEF 559
Score = 33.6 bits (67), Expect(2) = 2e-025
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +3 / +2
Query: 222 GSKVTFHLEKGCNPNYLALLVKY 290
G KVTFH+E+G NP Y LV +
Sbjct: 563 GLKVTFHVEQGSNPVYFPRLVGF 631
>gb|BE454367.2|BE454367 HVSMEh0093N18f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0093N18f, mRNA sequence
Length = 870
Score = 85.4 bits (180), Expect(3) = 2e-025
Identities = 32/52 (61%), Positives = 42/52 (80%)
Frame = +3 / +1
Query: 66 VYITDMNYEPIAAYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKY 221
V ITDMNY P+A YHFDL+GTAFG +AK G ++LR +GIID++F RV C++
Sbjct: 1 VIITDMNYYPVAPYHFDLSGTAFGRLAKPGLNDRLRHSGIIDIEFTRVPCEF 156
Score = 40.5 bits (82), Expect(3) = 2e-025
Identities = 13/54 (24%), Positives = 27/54 (50%)
Frame = +3 / +1
Query: 336 GSDTYEPLKHSWGAIWRKDSDKPIKGPITVQLTTEGGTKTVYDDVIPAGWKPNT 497
G + ++ SWG++WR + + ++ P +Q+ + G +P W+P T
Sbjct: 283 GGGKWTRMRESWGSVWRLNCNHRLQAPFCIQVRDKCGETLGGSMGVPGRWRPGT 444
Score = 27.6 bits (54), Expect(3) = 2e-025
Identities = 15/42 (35%), Positives = 17/42 (40%)
Frame = +1 / +2
Query: 211 SASMDLRSPSTWRRGAXXXXXXXXXXXXXAMATLWRWTSRRR 336
++S RS STWR A AT RWTS R
Sbjct: 149 ASSRGSRSGSTWRSTRTPSTSRCWWSTRTATATWCRWTSWSR 274
>gb|BI959720.1|BI959720 HVSMEn0020P05f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0020P05f, mRNA sequence
Length = 615
Score = 105 bits (224), Expect(2) = 2e-025
Identities = 41/59 (69%), Positives = 48/59 (81%)
Frame = +3 / +3
Query: 45 CSGKPVVVYITDMNYEPIAAYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKY 221
CSG P V ITDMNY P+A YHFDL+GTAFGAMAK G EKLR +GIID+QF+RV C++
Sbjct: 378 CSGNPETVVITDMNYYPVAKYHFDLSGTAFGAMAKPGLSEKLRHSGIIDIQFKRVPCEF 554
Score = 29.9 bits (59), Expect(2) = 2e-025
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3 / +3
Query: 222 GSKVTFHLEKGCNPNYLAL 278
G VTFH+E G NP Y A+
Sbjct: 558 GLNVTFHVEXGSNPVYFAV 614
>gb|BQ459308.1|BQ459308 HA01I15r HA Hordeum vulgare subsp. vulgare cDNA clone HA01I15
5-PRIME, mRNA sequence
Length = 396
Score = 73.9 bits (155), Expect(3) = 7e-025
Identities = 25/52 (48%), Positives = 35/52 (67%)
Frame = +3 / +2
Query: 354 PLKHSWGAIWRKDSDKPIKGPITVQLTTEGGTKTVYDDVIPAGWKPNTAYTA 509
P+K SWG+IWR D+ P++GP +++T E G V D VIP WKPN Y++
Sbjct: 239 PMKESWGSIWRMDAHHPMRGPFWLRVTNESGKTLVADKVIPGDWKPNKTYSS 394
Score = 39.1 bits (79), Expect(3) = 7e-025
Identities = 14/23 (60%), Positives = 19/23 (82%)
Frame = +3 / +2
Query: 222 GSKVTFHLEKGCNPNYLALLVKY 290
G VTFH+E+G NP Y+A+LV+Y
Sbjct: 74 GLTVTFHVEEGSNPFYMAILVEY 142
Score = 38.6 bits (78), Expect(3) = 7e-025
Identities = 14/23 (60%), Positives = 19/23 (82%)
Frame = +3 / +2
Query: 153 GEEEKLRKAGIIDMQFRRVKCKY 221
G ++LR AGII+MQF+RV C+Y
Sbjct: 2 GTRDELRHAGIINMQFKRVPCQY 70
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 373,583,235
Number of Sequences: 312970
Number of extensions: 6197943
Number of successful extensions: 64005
Number of sequences better than 1.0e-020: 107
length of database: 58,378,179
effective HSP length: 52
effective length of database: 42,103,739
effective search space used: 9852274926
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)