TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3203838.2.1
(534 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU978527.1|BU978527 HA13H23r HA Hordeum vulgare subsp. v... 183 7e-046
gb|AV836836.1|AV836836 AV836836 K. Sato unpublished cDNA li... 163 8e-040
gb|BU977918.1|BU977918 HA12E09u HA Hordeum vulgare subsp. v... 162 1e-039
gb|BJ544020.1|BJ544020 BJ544020 K. Sato unpublished cDNA li... 162 1e-039
gb|BJ545538.1|BJ545538 BJ545538 K. Sato unpublished cDNA li... 162 1e-039
gb|CB881999.1|CB881999 HM11I22w HM Hordeum vulgare subsp. v... 162 1e-039
gb|BQ753310.1|BQ753310 EBan01_SQ001_I10_R anther, yellow st... 154 3e-037
gb|BQ759606.1|BQ759606 EBpi03_SQ002_D17_R pistil, 4 DPA, no... 154 3e-037
gb|BJ549163.1|BJ549163 BJ549163 K. Sato unpublished cDNA li... 154 3e-037
gb|BJ548462.1|BJ548462 BJ548462 K. Sato unpublished cDNA li... 126 5e-037
gb|BJ550107.1|BJ550107 BJ550107 K. Sato unpublished cDNA li... 153 6e-037
gb|CB880789.1|CB880789 HM07N11w HM Hordeum vulgare subsp. v... 144 3e-034
gb|BU994127.1|BU994127 HM05N11r HM Hordeum vulgare subsp. v... 143 9e-034
gb|BJ447263.1|BJ447263 BJ447263 K. Sato unpublished cDNA li... 140 6e-033
gb|BJ454765.1|BJ454765 BJ454765 K. Sato unpublished cDNA li... 140 6e-033
gb|BG310264.2|BG310264 HVSMEc0016L11f Hordeum vulgare seedl... 129 1e-029
gb|AV916085.1|AV916085 AV916085 K. Sato unpublished cDNA li... 129 1e-029
gb|CA001190.1|CA001190 HS05A02u HS Hordeum vulgare subsp. v... 129 1e-029
gb|BF257150.3|BF257150 HVSMEf0012A06f Hordeum vulgare seedl... 124 4e-028
gb|AV917273.1|AV917273 AV917273 K. Sato unpublished cDNA li... 122 1e-027
gb|AV922443.1|AV922443 AV922443 K. Sato unpublished cDNA li... 122 1e-027
gb|CB879610.1|CB879610 HP02P10w HP Hordeum vulgare subsp. v... 121 4e-027
gb|BI949722.1|BI949722 HVSMEl0015I24f Hordeum vulgare spike... 119 1e-026
gb|BI960471.1|BI960471 HVSMEn0024L10f Hordeum vulgare rachi... 116 1e-025
gb|BQ761920.1|BQ761920 EBpi01_SQ005_D08_R pistil, 1 DPA, no... 110 6e-024
gb|CB880767.1|CB880767 HM07M03w HM Hordeum vulgare subsp. v... 110 6e-024
gb|BQ660971.1|BQ660971 HM01F04w HM Hordeum vulgare subsp. v... 102 2e-021
gb|BQ661428.1|BQ661428 HM03H06u HM Hordeum vulgare subsp. v... 102 2e-021
gb|BQ661689.1|BQ661689 HM04O09u HM Hordeum vulgare subsp. v... 102 2e-021
gb|CB858813.1|CB858813 HI08G13w HI Hordeum vulgare subsp. v... 102 2e-021
gb|CB881341.1|CB881341 HM09I05w HM Hordeum vulgare subsp. v... 102 2e-021
gb|CB881629.1|CB881629 HM10G11w HM Hordeum vulgare subsp. v... 102 2e-021
gb|AV921205.1|AV921205 AV921205 K. Sato unpublished cDNA li... 100 8e-021
>gb|BU978527.1|BU978527 HA13H23r HA Hordeum vulgare subsp. vulgare cDNA clone HA13H23
5-PRIME, mRNA sequence
Length = 476
Score = 183 bits (394), Expect = 7e-046
Identities = 73/105 (69%), Positives = 90/105 (85%)
Frame = -2 / +1
Query: 533 SSGRPGRYAYLALLKPQGKMILLGLPEKPLQISAFSLVTGGKTLAGSCMGSIRDTQEMMD 354
+S + YLALLKP GKMILLG+P KPLQ+SAF+L+ GGKTLAGSCM SI +TQEM+D
Sbjct: 157 ASAAASLHPYLALLKPHGKMILLGIPNKPLQVSAFALIGGGKTLAGSCMASISETQEMLD 336
Query: 353 FAAKHGLTADIELIGTEEVNEAMERLAKGEVRYRFVIDIGNTLNA 219
FAA+HG+ AD+E++G EVN+AMERLAKG+VRYRFVID+GNT+ A
Sbjct: 337 FAAEHGVAADVEVVGAGEVNKAMERLAKGDVRYRFVIDVGNTIKA 471
Score = 155 bits (334), Expect = 1e-037
Identities = 69/96 (71%), Positives = 73/96 (76%)
Frame = +1 / -1
Query: 217 AALRVLPMSMTKRYLTSPLARRSMASLTSSVPISSMSAVNPCLAAKSIISCVSLMLPMQL 396
+AL VLP SMTKRYLTSPLARRS+A TS P +S SA PC AAKS ISCVSLML MQL
Sbjct: 473 SALMVLPTSMTKRYLTSPLARRSIALFTSPAPTTSTSAATPCSAAKSSISCVSLMLAMQL 294
Query: 397 PARVLPPVTKEKAEICRGFSGRPSRIILPWGLRRAR 504
PARVLPP + AE CRG G PSRIILPWGL AR
Sbjct: 293 PARVLPPPMRANAETCRGLLGMPSRIILPWGLSSAR 186
>gb|AV836836.1|AV836836 AV836836 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare seedling leaves second leaf stage Hordeum
vulgare subsp. vulgare cDNA clone basd27e20, mRNA
sequence
Length = 646
Score = 163 bits (350), Expect = 8e-040
Identities = 68/101 (67%), Positives = 83/101 (82%)
Frame = -2 / -2
Query: 503 LALLKPQGKMILLGLPEKPLQISAFSLVTGGKTLAGSCMGSIRDTQEMMDFAAKHGLTAD 324
L LLKP GKMI++GLPE P++IS F+LV KTLAGSC+G +RDTQEM+D AAKH +TAD
Sbjct: 474 LGLLKPNGKMIMVGLPENPMEISPFALVATNKTLAGSCIGGMRDTQEMLDLAAKHDVTAD 295
Query: 323 IELIGTEEVNEAMERLAKGEVRYRFVIDIGNTLNAASLGSS 201
IE+I E VN AMERLAK +VRYRFVIDIGNTL+ A+ ++
Sbjct: 294 IEVIDAEYVNTAMERLAKADVRYRFVIDIGNTLDNAAAAAT 172
Score = 127 bits (271), Expect = 6e-029
Identities = 62/91 (68%), Positives = 66/91 (72%)
Frame = +1 / +2
Query: 217 AALRVLPMSMTKRYLTSPLARRSMASLTSSVPISSMSAVNPCLAAKSIISCVSLMLPMQL 396
A RVLPMSMT RYLTS LA RSMA T S I+SMSAV C AA+S IS VSLM PMQL
Sbjct: 188 ALSRVLPMSMTNRYLTSALASRSMAVFTYSASITSMSAVTSCFAARSSISWVSLMPPMQL 367
Query: 397 PARVLPPVTKEKAEICRGFSGRPSRIILPWG 489
PARVL T+ K EI GFSGRP+ IILP G
Sbjct: 368 PARVLFVATRAKGEISIGFSGRPTMIILPLG 460
>gb|BU977918.1|BU977918 HA12E09u HA Hordeum vulgare subsp. vulgare cDNA clone HA12E09
3-PRIME, mRNA sequence
Length = 497
Score = 162 bits (348), Expect = 1e-039
Identities = 66/101 (65%), Positives = 83/101 (82%)
Frame = -2 / -3
Query: 503 LALLKPQGKMILLGLPEKPLQISAFSLVTGGKTLAGSCMGSIRDTQEMMDFAAKHGLTAD 324
L LLKP GKMI++GLPE+P+++ F+LV KTLAGSC+G +RDTQEM+D AAKHG+TAD
Sbjct: 474 LGLLKPNGKMIMVGLPEQPIEVPPFALVARNKTLAGSCIGGMRDTQEMLDLAAKHGVTAD 295
Query: 323 IELIGTEEVNEAMERLAKGEVRYRFVIDIGNTLNAASLGSS 201
IE+I E VN AMERLAK +VRYRFVIDI NTL+ A+ ++
Sbjct: 294 IEVISAEYVNTAMERLAKADVRYRFVIDIANTLDKAAAAAT 172
Score = 120 bits (256), Expect = 7e-027
Identities = 61/96 (63%), Positives = 66/96 (68%)
Frame = +1 / +2
Query: 217 AALRVLPMSMTKRYLTSPLARRSMASLTSSVPISSMSAVNPCLAAKSIISCVSLMLPMQL 396
A RVL MSMT RYLTS LARRS+A T S I+SMSAV PC AA+S IS VSLM PMQL
Sbjct: 188 ALSRVLAMSMTNRYLTSALARRSIAVFTYSALITSMSAVTPCFAARSSISWVSLMPPMQL 367
Query: 397 PARVLPPVTKEKAEICRGFSGRPSRIILPWGLRRAR 504
PARVL T+ K G SGRP+ IILP GL R
Sbjct: 368 PARVLFLATRAKGGTSIGCSGRPTMIILPLGLSSPR 475
>gb|BJ544020.1|BJ544020 BJ544020 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak17o14 5', mRNA sequence
Length = 572
Score = 162 bits (348), Expect = 1e-039
Identities = 66/101 (65%), Positives = 83/101 (82%)
Frame = -2 / +3
Query: 503 LALLKPQGKMILLGLPEKPLQISAFSLVTGGKTLAGSCMGSIRDTQEMMDFAAKHGLTAD 324
L LLKP GKMI++GLPE+P+++ F+LV KTLAGSC+G +RDTQEM+D AAKHG+TAD
Sbjct: 153 LGLLKPNGKMIMVGLPEQPIEVPPFALVARNKTLAGSCIGGMRDTQEMLDLAAKHGVTAD 332
Query: 323 IELIGTEEVNEAMERLAKGEVRYRFVIDIGNTLNAASLGSS 201
IE+I E VN AMERLAK +VRYRFVIDI NTL+ A+ ++
Sbjct: 333 IEVISAEYVNTAMERLAKADVRYRFVIDIANTLDKAAAAAT 455
Score = 120 bits (256), Expect = 7e-027
Identities = 61/96 (63%), Positives = 66/96 (68%)
Frame = +1 / -2
Query: 217 AALRVLPMSMTKRYLTSPLARRSMASLTSSVPISSMSAVNPCLAAKSIISCVSLMLPMQL 396
A RVL MSMT RYLTS LARRS+A T S I+SMSAV PC AA+S IS VSLM PMQL
Sbjct: 439 ALSRVLAMSMTNRYLTSALARRSIAVFTYSALITSMSAVTPCFAARSSISWVSLMPPMQL 260
Query: 397 PARVLPPVTKEKAEICRGFSGRPSRIILPWGLRRAR 504
PARVL T+ K G SGRP+ IILP GL R
Sbjct: 259 PARVLFLATRAKGGTSIGCSGRPTMIILPLGLSSPR 152
>gb|BJ545538.1|BJ545538 BJ545538 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak17o14 3', mRNA sequence
Length = 634
Score = 162 bits (348), Expect = 1e-039
Identities = 66/101 (65%), Positives = 83/101 (82%)
Frame = -2 / -2
Query: 503 LALLKPQGKMILLGLPEKPLQISAFSLVTGGKTLAGSCMGSIRDTQEMMDFAAKHGLTAD 324
L LLKP GKMI++GLPE+P+++ F+LV KTLAGSC+G +RDTQEM+D AAKHG+TAD
Sbjct: 468 LGLLKPNGKMIMVGLPEQPIEVPPFALVARNKTLAGSCIGGMRDTQEMLDLAAKHGVTAD 289
Query: 323 IELIGTEEVNEAMERLAKGEVRYRFVIDIGNTLNAASLGSS 201
IE+I E VN AMERLAK +VRYRFVIDI NTL+ A+ ++
Sbjct: 288 IEVISAEYVNTAMERLAKADVRYRFVIDIANTLDKAAAAAT 166
Score = 120 bits (256), Expect = 7e-027
Identities = 61/96 (63%), Positives = 66/96 (68%)
Frame = +1 / +2
Query: 217 AALRVLPMSMTKRYLTSPLARRSMASLTSSVPISSMSAVNPCLAAKSIISCVSLMLPMQL 396
A RVL MSMT RYLTS LARRS+A T S I+SMSAV PC AA+S IS VSLM PMQL
Sbjct: 182 ALSRVLAMSMTNRYLTSALARRSIAVFTYSALITSMSAVTPCFAARSSISWVSLMPPMQL 361
Query: 397 PARVLPPVTKEKAEICRGFSGRPSRIILPWGLRRAR 504
PARVL T+ K G SGRP+ IILP GL R
Sbjct: 362 PARVLFLATRAKGGTSIGCSGRPTMIILPLGLSSPR 469
>gb|CB881999.1|CB881999 HM11I22w HM Hordeum vulgare subsp. vulgare cDNA clone HM11I22
3-PRIME, mRNA sequence
Length = 596
Score = 162 bits (348), Expect = 1e-039
Identities = 66/101 (65%), Positives = 83/101 (82%)
Frame = -2 / -2
Query: 503 LALLKPQGKMILLGLPEKPLQISAFSLVTGGKTLAGSCMGSIRDTQEMMDFAAKHGLTAD 324
L LLKP GKMI++GLPE+P+++ F+LV KTLAGSC+G +RDTQEM+D AAKHG+TAD
Sbjct: 475 LGLLKPNGKMIMVGLPEQPIEVPPFALVARNKTLAGSCIGGMRDTQEMLDLAAKHGVTAD 296
Query: 323 IELIGTEEVNEAMERLAKGEVRYRFVIDIGNTLNAASLGSS 201
IE+I E VN AMERLAK +VRYRFVIDI NTL+ A+ ++
Sbjct: 295 IEVISAEYVNTAMERLAKADVRYRFVIDIANTLDKAAAAAT 173
Score = 120 bits (256), Expect = 7e-027
Identities = 61/96 (63%), Positives = 66/96 (68%)
Frame = +1 / +3
Query: 217 AALRVLPMSMTKRYLTSPLARRSMASLTSSVPISSMSAVNPCLAAKSIISCVSLMLPMQL 396
A RVL MSMT RYLTS LARRS+A T S I+SMSAV PC AA+S IS VSLM PMQL
Sbjct: 189 ALSRVLAMSMTNRYLTSALARRSIAVFTYSALITSMSAVTPCFAARSSISWVSLMPPMQL 368
Query: 397 PARVLPPVTKEKAEICRGFSGRPSRIILPWGLRRAR 504
PARVL T+ K G SGRP+ IILP GL R
Sbjct: 369 PARVLFLATRAKGGTSIGCSGRPTMIILPLGLSSPR 476
>gb|BQ753310.1|BQ753310 EBan01_SQ001_I10_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ001_I10 5', mRNA sequence
Length = 509
Score = 154 bits (331), Expect = 3e-037
Identities = 63/95 (66%), Positives = 79/95 (83%)
Frame = -2 / +2
Query: 497 LLKPQGKMILLGLPEKPLQISAFSLVTGGKTLAGSCMGSIRDTQEMMDFAAKHGLTADIE 318
LLKP GKM+++GLPEKP+++ F+LV KTL+GS +G + DTQEM+D AAKHG+TADIE
Sbjct: 83 LLKPNGKMVMVGLPEKPVEVPPFALVAKNKTLSGSFIGGMSDTQEMLDLAAKHGVTADIE 262
Query: 317 LIGTEEVNEAMERLAKGEVRYRFVIDIGNTLNAAS 213
+I E VN AMERLAK +VRYRFVIDIGNTL+ A+
Sbjct: 263 VISAEYVNTAMERLAKADVRYRFVIDIGNTLDKAA 367
Score = 120 bits (257), Expect = 5e-027
Identities = 59/92 (64%), Positives = 65/92 (70%)
Frame = +1 / -3
Query: 217 AALRVLPMSMTKRYLTSPLARRSMASLTSSVPISSMSAVNPCLAAKSIISCVSLMLPMQL 396
A RVLPMSMT RYLTS LARRS+A T S I+SMSAV PC AA+S IS VSLM PM+L
Sbjct: 363 ALSRVLPMSMTNRYLTSALARRSIAVFTYSALITSMSAVTPCFAARSSISWVSLMPPMKL 184
Query: 397 PARVLPPVTKEKAEICRGFSGRPSRIILPWGL 492
P RVL T+ K GFSGRP+ ILP GL
Sbjct: 183 PDRVLFLATRAKGGTSTGFSGRPTMTILPLGL 88
>gb|BQ759606.1|BQ759606 EBpi03_SQ002_D17_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ002_D17 5', mRNA sequence
Length = 441
Score = 154 bits (331), Expect = 3e-037
Identities = 63/95 (66%), Positives = 79/95 (83%)
Frame = -2 / +1
Query: 497 LLKPQGKMILLGLPEKPLQISAFSLVTGGKTLAGSCMGSIRDTQEMMDFAAKHGLTADIE 318
LLKP GKM+++GLPEKP+++ F+LV KTL+GS +G + DTQEM+D AAKHG+TADIE
Sbjct: 73 LLKPNGKMVMVGLPEKPVEVPPFALVAKNKTLSGSFIGGMSDTQEMLDLAAKHGVTADIE 252
Query: 317 LIGTEEVNEAMERLAKGEVRYRFVIDIGNTLNAAS 213
+I E VN AMERLAK +VRYRFVIDIGNTL+ A+
Sbjct: 253 VISAEYVNTAMERLAKADVRYRFVIDIGNTLDKAA 357
Score = 120 bits (257), Expect = 5e-027
Identities = 59/92 (64%), Positives = 65/92 (70%)
Frame = +1 / -2
Query: 217 AALRVLPMSMTKRYLTSPLARRSMASLTSSVPISSMSAVNPCLAAKSIISCVSLMLPMQL 396
A RVLPMSMT RYLTS LARRS+A T S I+SMSAV PC AA+S IS VSLM PM+L
Sbjct: 353 ALSRVLPMSMTNRYLTSALARRSIAVFTYSALITSMSAVTPCFAARSSISWVSLMPPMKL 174
Query: 397 PARVLPPVTKEKAEICRGFSGRPSRIILPWGL 492
P RVL T+ K GFSGRP+ ILP GL
Sbjct: 173 PDRVLFLATRAKGGTSTGFSGRPTMTILPLGL 78
>gb|BJ549163.1|BJ549163 BJ549163 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags24k08 5', mRNA sequence
Length = 627
Score = 154 bits (331), Expect = 3e-037
Identities = 63/95 (66%), Positives = 79/95 (83%)
Frame = -2 / +1
Query: 497 LLKPQGKMILLGLPEKPLQISAFSLVTGGKTLAGSCMGSIRDTQEMMDFAAKHGLTADIE 318
LLKP GKM+++GLPEKP+++ F+LV KTL+GS +G + DTQEM+D AAKHG+TADIE
Sbjct: 112 LLKPNGKMVMVGLPEKPVEVPPFALVAKNKTLSGSFIGGMSDTQEMLDLAAKHGVTADIE 291
Query: 317 LIGTEEVNEAMERLAKGEVRYRFVIDIGNTLNAAS 213
+I E VN AMERLAK +VRYRFVIDIGNTL+ A+
Sbjct: 292 VISAEYVNTAMERLAKADVRYRFVIDIGNTLDKAA 396
Score = 120 bits (257), Expect = 5e-027
Identities = 59/92 (64%), Positives = 65/92 (70%)
Frame = +1 / -2
Query: 217 AALRVLPMSMTKRYLTSPLARRSMASLTSSVPISSMSAVNPCLAAKSIISCVSLMLPMQL 396
A RVLPMSMT RYLTS LARRS+A T S I+SMSAV PC AA+S IS VSLM PM+L
Sbjct: 392 ALSRVLPMSMTNRYLTSALARRSIAVFTYSALITSMSAVTPCFAARSSISWVSLMPPMKL 213
Query: 397 PARVLPPVTKEKAEICRGFSGRPSRIILPWGL 492
P RVL T+ K GFSGRP+ ILP GL
Sbjct: 212 PDRVLFLATRAKGGTSTGFSGRPTMTILPLGL 117
>gb|BJ548462.1|BJ548462 BJ548462 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal25k20 3', mRNA sequence
Length = 600
Score = 126 bits (270), Expect(2) = 5e-037
Identities = 53/77 (68%), Positives = 63/77 (81%)
Frame = -2 / -1
Query: 431 FSLVTGGKTLAGSCMGSIRDTQEMMDFAAKHGLTADIELIGTEEVNEAMERLAKGEVRYR 252
FS TG KTLAGSC+G +RDTQEM+D AAKHG+TADIE+I E VN AMERLAK +VRYR
Sbjct: 366 FSECTGNKTLAGSCIGGMRDTQEMLDLAAKHGVTADIEVISAEYVNTAMERLAKADVRYR 187
Query: 251 FVIDIGNTLNAASLGSS 201
FVIDI NTL+ A+ ++
Sbjct: 186 FVIDIANTLDKAAAAAT 136
Score = 100 bits (214), Expect(2) = 9e-028
Identities = 50/71 (70%), Positives = 53/71 (74%)
Frame = +1 / +2
Query: 217 AALRVLPMSMTKRYLTSPLARRSMASLTSSVPISSMSAVNPCLAAKSIISCVSLMLPMQL 396
A RVL MSMT RYLTS LARRS+A T S I+SMSAV PC AA+S IS VSLM PMQL
Sbjct: 152 ALSRVLAMSMTNRYLTSALARRSIAVFTYSALITSMSAVTPCFAARSSISWVSLMPPMQL 331
Query: 397 PARVLPPVTKE 429
PARVL PV E
Sbjct: 332 PARVLFPVHSE 364
Score = 47.3 bits (97), Expect(2) = 5e-037
Identities = 17/28 (60%), Positives = 24/28 (85%)
Frame = -2 / -2
Query: 503 LALLKPQGKMILLGLPEKPLQISAFSLV 420
L LLKP GKMI++GLPE+P+++ F+LV
Sbjct: 539 LGLLKPNGKMIMVGLPEQPIEVPPFALV 456
Score = 41.8 bits (85), Expect(2) = 9e-028
Identities = 17/25 (68%), Positives = 20/25 (80%)
Frame = +3 / +3
Query: 420 NQREGRDLQRLLRQAKQDHLALGLE 494
NQ +GRDL RLL +A DHLA+GLE
Sbjct: 456 NQSKGRDLDRLLWEADHDHLAVGLE 530
>gb|BJ550107.1|BJ550107 BJ550107 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags37c03 3', mRNA sequence
Length = 641
Score = 153 bits (329), Expect = 6e-037
Identities = 63/96 (65%), Positives = 77/96 (80%)
Frame = -2 / -2
Query: 503 LALLKPQGKMILLGLPEKPLQISAFSLVTGGKTLAGSCMGSIRDTQEMMDFAAKHGLTAD 324
L LLKP GKM+++GLPE +Q+ F+LV KTLAGSCMG + +TQEM+D AAKHG+TAD
Sbjct: 514 LGLLKPNGKMVMVGLPENSIQLPPFALVATNKTLAGSCMGGMSETQEMLDLAAKHGVTAD 335
Query: 323 IELIGTEEVNEAMERLAKGEVRYRFVIDIGNTLNAA 216
IE+I + VN AM+RLAK +VRYRFVIDIGNTL A
Sbjct: 334 IEVIRADYVNTAMDRLAKADVRYRFVIDIGNTLQKA 227
Score = 128 bits (275), Expect = 2e-029
Identities = 63/93 (67%), Positives = 69/93 (74%)
Frame = +1 / +3
Query: 226 RVLPMSMTKRYLTSPLARRSMASLTSSVPISSMSAVNPCLAAKSIISCVSLMLPMQLPAR 405
RVLPMSMTKRYLTS LARRSMA LT S ++SMSAV PCLAA+S IS VSLM PMQLPAR
Sbjct: 237 RVLPMSMTKRYLTSALARRSMAVLT*SARMTSMSAVTPCLAARSSISWVSLMPPMQLPAR 416
Query: 406 VLPPVTKEKAEICRGFSGRPSRIILPWGLRRAR 504
VL T+ K FSGRP+ ILP GL + R
Sbjct: 417 VLFVATRAKGGSWMEFSGRPTMTILPLGLSKPR 515
>gb|CB880789.1|CB880789 HM07N11w HM Hordeum vulgare subsp. vulgare cDNA clone HM07N11
3-PRIME, mRNA sequence
Length = 479
Score = 144 bits (310), Expect = 3e-034
Identities = 60/91 (65%), Positives = 75/91 (82%)
Frame = -2 / -3
Query: 473 ILLGLPEKPLQISAFSLVTGGKTLAGSCMGSIRDTQEMMDFAAKHGLTADIELIGTEEVN 294
I++GLPE P++IS F+LV KTLAGSC+G +RDTQEM+D AAKH +TADIE+I E VN
Sbjct: 471 IMVGLPENPMEISPFALVATNKTLAGSCIGGMRDTQEMLDLAAKHDVTADIEVIDAEYVN 292
Query: 293 EAMERLAKGEVRYRFVIDIGNTLNAASLGSS 201
AMERLAK +VRYRFVIDIGNTL+ A+ ++
Sbjct: 291 TAMERLAKADVRYRFVIDIGNTLDNAAAAAT 199
Score = 119 bits (255), Expect = 1e-026
Identities = 58/88 (65%), Positives = 64/88 (72%)
Frame = +1 / +2
Query: 217 AALRVLPMSMTKRYLTSPLARRSMASLTSSVPISSMSAVNPCLAAKSIISCVSLMLPMQL 396
A RVLPMSMT RYLTS LA RSMA T S I+SMSAV C AA+S IS VSLM PMQL
Sbjct: 215 ALSRVLPMSMTNRYLTSALASRSMAVFTYSASITSMSAVTSCFAARSSISWVSLMPPMQL 394
Query: 397 PARVLPPVTKEKAEICRGFSGRPSRIIL 480
PARVL T+ K EI GFSGRP+ I++
Sbjct: 395 PARVLFVATRAKGEISIGFSGRPTMILV 478
>gb|BU994127.1|BU994127 HM05N11r HM Hordeum vulgare subsp. vulgare cDNA clone HM05N11
5-PRIME, mRNA sequence
Length = 480
Score = 143 bits (306), Expect = 9e-034
Identities = 59/90 (65%), Positives = 74/90 (82%)
Frame = -2 / +1
Query: 470 LLGLPEKPLQISAFSLVTGGKTLAGSCMGSIRDTQEMMDFAAKHGLTADIELIGTEEVNE 291
++GLPE P++IS F+LV KTLAGSC+G +RDTQEM+D AAKH +TADIE+I E VN
Sbjct: 13 MVGLPENPMEISPFALVATNKTLAGSCIGGMRDTQEMLDLAAKHDVTADIEVIDAEYVNT 192
Query: 290 AMERLAKGEVRYRFVIDIGNTLNAASLGSS 201
AMERLAK +VRYRFVIDIGNTL+ A+ ++
Sbjct: 193 AMERLAKADVRYRFVIDIGNTLDNAAAAAT 282
Score = 116 bits (249), Expect = 7e-026
Identities = 57/84 (67%), Positives = 61/84 (72%)
Frame = +1 / -2
Query: 217 AALRVLPMSMTKRYLTSPLARRSMASLTSSVPISSMSAVNPCLAAKSIISCVSLMLPMQL 396
A RVLPMSMT RYLTS LA RSMA T S I+SMSAV C AA+S IS VSLM PMQL
Sbjct: 266 ALSRVLPMSMTNRYLTSALASRSMAVFTYSASITSMSAVTSCFAARSSISWVSLMPPMQL 87
Query: 397 PARVLPPVTKEKAEICRGFSGRPS 468
PARVL T+ K EI GFSGRP+
Sbjct: 86 PARVLFVATRAKGEISIGFSGRPT 15
>gb|BJ447263.1|BJ447263 BJ447263 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak14l05 5', mRNA sequence
Length = 575
Score = 140 bits (300), Expect = 6e-033
Identities = 54/96 (56%), Positives = 77/96 (80%)
Frame = -2 / +3
Query: 500 ALLKPQGKMILLGLPEKPLQISAFSLVTGGKTLAGSCMGSIRDTQEMMDFAAKHGLTADI 321
AL+KP G+M+ +G P KPL++ A+++V GGK +AG+C+G IRD Q M++FAAKHG+TA++
Sbjct: 183 ALMKPMGQMVFVGGPTKPLELPAYAIVPGGKGIAGNCVGGIRDCQAMLEFAAKHGITAEV 362
Query: 320 ELIGTEEVNEAMERLAKGEVRYRFVIDIGNTLNAAS 213
E+I + VN A+ERLAK +VRYRFVIDI +L + S
Sbjct: 363 EVIKMDYVNTALERLAKNDVRYRFVIDIAGSLGSTS 470
>gb|BJ454765.1|BJ454765 BJ454765 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak14l05 3', mRNA sequence
Length = 554
Score = 140 bits (300), Expect = 6e-033
Identities = 54/96 (56%), Positives = 77/96 (80%)
Frame = -2 / -3
Query: 500 ALLKPQGKMILLGLPEKPLQISAFSLVTGGKTLAGSCMGSIRDTQEMMDFAAKHGLTADI 321
AL+KP G+M+ +G P KPL++ A+++V GGK +AG+C+G IRD Q M++FAAKHG+TA++
Sbjct: 372 ALMKPMGQMVFVGGPTKPLELPAYAIVPGGKGIAGNCVGGIRDCQAMLEFAAKHGITAEV 193
Query: 320 ELIGTEEVNEAMERLAKGEVRYRFVIDIGNTLNAAS 213
E+I + VN A+ERLAK +VRYRFVIDI +L + S
Sbjct: 192 EVIKMDYVNTALERLAKNDVRYRFVIDIAGSLGSTS 85
>gb|BG310264.2|BG310264 HVSMEc0016L11f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0016L11f, mRNA sequence
Length = 758
Score = 129 bits (276), Expect = 1e-029
Identities = 48/92 (52%), Positives = 72/92 (78%)
Frame = -2 / -1
Query: 503 LALLKPQGKMILLGLPEKPLQISAFSLVTGGKTLAGSCMGSIRDTQEMMDFAAKHGLTAD 324
L L+KP G+M+++G P +PL + A++++ GGK LAG+ +GS+RD Q M+DFA KHG+TAD
Sbjct: 635 LELIKPMGQMVVVGAPSEPLALPAYAIIGGGKRLAGNGVGSVRDCQAMLDFAGKHGITAD 456
Query: 323 IELIGTEEVNEAMERLAKGEVRYRFVIDIGNT 228
+E++ + VN A+ERL K +VRYRFVID+ +
Sbjct: 455 VEVVKMDYVNTAVERLEKNDVRYRFVIDVAGS 360
>gb|AV916085.1|AV916085 AV916085 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags1g09 5', mRNA sequence
Length = 616
Score = 129 bits (276), Expect = 1e-029
Identities = 48/92 (52%), Positives = 72/92 (78%)
Frame = -2 / +2
Query: 503 LALLKPQGKMILLGLPEKPLQISAFSLVTGGKTLAGSCMGSIRDTQEMMDFAAKHGLTAD 324
L L+KP G+M+++G P +PL + A++++ GGK LAG+ +GS+RD Q M+DFA KHG+TAD
Sbjct: 227 LELMKPMGQMVVVGAPSEPLALPAYAIIGGGKRLAGNGVGSVRDCQAMLDFAGKHGITAD 406
Query: 323 IELIGTEEVNEAMERLAKGEVRYRFVIDIGNT 228
+E++ + VN A+ERL K +VRYRFVID+ +
Sbjct: 407 VEVVKMDYVNTAVERLEKNDVRYRFVIDVAGS 502
>gb|CA001190.1|CA001190 HS05A02u HS Hordeum vulgare subsp. vulgare cDNA clone HS05A02
3-PRIME, mRNA sequence
Length = 513
Score = 129 bits (276), Expect = 1e-029
Identities = 48/92 (52%), Positives = 72/92 (78%)
Frame = -2 / -2
Query: 503 LALLKPQGKMILLGLPEKPLQISAFSLVTGGKTLAGSCMGSIRDTQEMMDFAAKHGLTAD 324
L L+KP G+M+++G P +PL + A++++ GGK LAG+ +GS+RD Q M+DFA KHG+TAD
Sbjct: 419 LELMKPMGQMVVVGAPSEPLALPAYAIIGGGKRLAGNGVGSVRDCQAMLDFAGKHGITAD 240
Query: 323 IELIGTEEVNEAMERLAKGEVRYRFVIDIGNT 228
+E++ + VN A+ERL K +VRYRFVID+ +
Sbjct: 239 VEVVKMDYVNTAVERLEKNDVRYRFVIDVAGS 144
>gb|BF257150.3|BF257150 HVSMEf0012A06f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0012A06f, mRNA sequence
Length = 852
Score = 124 bits (265), Expect = 4e-028
Identities = 47/89 (52%), Positives = 70/89 (78%)
Frame = -2 / +2
Query: 503 LALLKPQGKMILLGLPEKPLQISAFSLVTGGKTLAGSCMGSIRDTQEMMDFAAKHGLTAD 324
L L+KP G+M+++G P +PL + A++++ GGK LAG+ +GS+RD Q M+DFA KHG+TAD
Sbjct: 212 LELMKPMGQMVVVGAPSEPLALPAYAIIGGGKRLAGNGVGSVRDCQAMLDFAGKHGITAD 391
Query: 323 IELIGTEEVNEAMERLAKGEVRYRFVIDI 237
+E++ + VN A+ERL K +VR RFVID+
Sbjct: 392 VEVVKMDYVNTAVERLEKNDVRDRFVIDV 478
>gb|AV917273.1|AV917273 AV917273 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags18d14 5', mRNA sequence
Length = 546
Score = 122 bits (262), Expect = 1e-027
Identities = 44/89 (49%), Positives = 70/89 (78%)
Frame = -2 / +3
Query: 503 LALLKPQGKMILLGLPEKPLQISAFSLVTGGKTLAGSCMGSIRDTQEMMDFAAKHGLTAD 324
L LLK GK++L+ P+KP+++ +F L+ G +T++GS G +++TQEMMD +HG+TAD
Sbjct: 81 LELLKVNGKLVLVAAPDKPVELPSFPLIFGKRTVSGSMTGGMKETQEMMDLCGEHGITAD 260
Query: 323 IELIGTEEVNEAMERLAKGEVRYRFVIDI 237
IEL+ T+ +N+A+ RLA+ +VRYRFV+D+
Sbjct: 261 IELVSTDGINDALARLARNDVRYRFVVDV 347
>gb|AV922443.1|AV922443 AV922443 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags18d14 3', mRNA sequence
Length = 520
Score = 122 bits (262), Expect = 1e-027
Identities = 44/89 (49%), Positives = 70/89 (78%)
Frame = -2 / -2
Query: 503 LALLKPQGKMILLGLPEKPLQISAFSLVTGGKTLAGSCMGSIRDTQEMMDFAAKHGLTAD 324
L LLK GK++L+ P+KP+++ +F L+ G +T++GS G +++TQEMMD +HG+TAD
Sbjct: 468 LELLKVNGKLVLVAAPDKPVELPSFPLIFGKRTVSGSMTGGMKETQEMMDLCGEHGITAD 289
Query: 323 IELIGTEEVNEAMERLAKGEVRYRFVIDI 237
IEL+ T+ +N+A+ RLA+ +VRYRFV+D+
Sbjct: 288 IELVSTDGINDALARLARNDVRYRFVVDV 202
>gb|CB879610.1|CB879610 HP02P10w HP Hordeum vulgare subsp. vulgare cDNA clone HP02P10
3-PRIME, mRNA sequence
Length = 667
Score = 121 bits (258), Expect = 4e-027
Identities = 44/89 (49%), Positives = 69/89 (77%)
Frame = -2 / -1
Query: 503 LALLKPQGKMILLGLPEKPLQISAFSLVTGGKTLAGSCMGSIRDTQEMMDFAAKHGLTAD 324
L LLK GK++L+ P+KP+++ +F L+ G +T++GS G +++TQEMMD +HG+TAD
Sbjct: 472 LELLKVNGKLVLVAAPDKPVELPSFPLIFGKRTVSGSMTGGMKETQEMMDLCGEHGITAD 293
Query: 323 IELIGTEEVNEAMERLAKGEVRYRFVIDI 237
IEL+ T +N+A+ RLA+ +VRYRFV+D+
Sbjct: 292 IELVSTGGINDALARLARNDVRYRFVVDV 206
>gb|BI949722.1|BI949722 HVSMEl0015I24f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0015I24f, mRNA sequence
Length = 561
Score = 119 bits (255), Expect = 1e-026
Identities = 44/85 (51%), Positives = 67/85 (78%)
Frame = -2 / +1
Query: 482 GKMILLGLPEKPLQISAFSLVTGGKTLAGSCMGSIRDTQEMMDFAAKHGLTADIELIGTE 303
G+M+++G P +PL + A++++ GGK LAG+ +GS+RD Q M+DFA KHG+TAD+E++ +
Sbjct: 4 GQMVVVGAPSEPLALPAYAIIGGGKRLAGNGVGSVRDCQAMLDFAGKHGITADVEVVKMD 183
Query: 302 EVNEAMERLAKGEVRYRFVIDIGNT 228
VN A+ERL K +VRYRFVID+ +
Sbjct: 184 YVNTAVERLEKNDVRYRFVIDVAGS 258
>gb|BI960471.1|BI960471 HVSMEn0024L10f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0024L10f, mRNA sequence
Length = 647
Score = 116 bits (247), Expect = 1e-025
Identities = 45/82 (54%), Positives = 64/82 (78%)
Frame = -2 / +2
Query: 458 PEKPLQISAFSLVTGGKTLAGSCMGSIRDTQEMMDFAAKHGLTADIELIGTEEVNEAMER 279
P KPL++ ++V GGK +AG+C+G IRD Q M++FAAKHG+TA++E+I + VN A+ER
Sbjct: 2 PTKPLELPGDAIVPGGKGIAGNCVGGIRDCQAMLEFAAKHGITAEVEVIKMDYVNTALER 181
Query: 278 LAKGEVRYRFVIDIGNTLNAAS 213
+AK +VRYRFVIDI +L + S
Sbjct: 182 VAKNDVRYRFVIDIAGSLGSTS 247
>gb|BQ761920.1|BQ761920 EBpi01_SQ005_D08_R pistil, 1 DPA, no treatment, cv Optic, EBpi01
Hordeum vulgare subsp. vulgare cDNA clone
EBpi01_SQ005_D08 5', mRNA sequence
Length = 383
Score = 110 bits (235), Expect = 6e-024
Identities = 45/66 (68%), Positives = 55/66 (83%)
Frame = -2 / +3
Query: 398 GSCMGSIRDTQEMMDFAAKHGLTADIELIGTEEVNEAMERLAKGEVRYRFVIDIGNTLNA 219
GSC+G +RDTQEM+D AAKHG+TADIE+I E VN AMERLAK +VRYRFVIDI NTL+
Sbjct: 3 GSCIGGMRDTQEMLDLAAKHGVTADIEVISAEYVNTAMERLAKADVRYRFVIDIANTLDK 182
Query: 218 ASLGSS 201
A+ ++
Sbjct: 183 AAAAAT 200
>gb|CB880767.1|CB880767 HM07M03w HM Hordeum vulgare subsp. vulgare cDNA clone HM07M03
3-PRIME, mRNA sequence
Length = 552
Score = 110 bits (235), Expect = 6e-024
Identities = 45/66 (68%), Positives = 55/66 (83%)
Frame = -2 / -3
Query: 398 GSCMGSIRDTQEMMDFAAKHGLTADIELIGTEEVNEAMERLAKGEVRYRFVIDIGNTLNA 219
GSC+G +RDTQEM+D AAKHG+TADIE+I E VN AMERLAK +VRYRFVIDI NTL+
Sbjct: 550 GSCIGGMRDTQEMLDLAAKHGVTADIEVISAEYVNTAMERLAKADVRYRFVIDIANTLDK 371
Query: 218 ASLGSS 201
A+ ++
Sbjct: 370 AAAAAT 353
>gb|BQ660971.1|BQ660971 HM01F04w HM Hordeum vulgare subsp. vulgare cDNA clone HM01F04
3-PRIME, mRNA sequence
Length = 600
Score = 102 bits (217), Expect = 2e-021
Identities = 40/93 (43%), Positives = 66/93 (70%)
Frame = -2 / -2
Query: 506 YLALLKPQGKMILLGLPEKPLQISAFSLVTGGKTLAGSCMGSIRDTQEMMDFAAKHGLTA 327
YLALLK GK++L+G+ +PL + ++ G KT+ GS +GS+ +T+E++ F GLT+
Sbjct: 398 YLALLKMDGKLVLMGVIAEPLSFVSPMVMLGRKTITGSFIGSMDETEEVLKFCVDKGLTS 219
Query: 326 DIELIGTEEVNEAMERLAKGEVRYRFVIDIGNT 228
IE++ + VN+A+ERL + +VRYRFV+D+ +
Sbjct: 218 QIEVVKMDYVNQALERLERNDVRYRFVVDVAGS 120
>gb|BQ661428.1|BQ661428 HM03H06u HM Hordeum vulgare subsp. vulgare cDNA clone HM03H06
3-PRIME, mRNA sequence
Length = 486
Score = 102 bits (217), Expect = 2e-021
Identities = 40/93 (43%), Positives = 66/93 (70%)
Frame = -2 / -2
Query: 506 YLALLKPQGKMILLGLPEKPLQISAFSLVTGGKTLAGSCMGSIRDTQEMMDFAAKHGLTA 327
YLALLK GK++L+G+ +PL + ++ G KT+ GS +GS+ +T+E++ F GLT+
Sbjct: 398 YLALLKMDGKLVLMGVIAEPLSFVSPMVMLGRKTITGSFIGSMDETEEVLKFCVDKGLTS 219
Query: 326 DIELIGTEEVNEAMERLAKGEVRYRFVIDIGNT 228
IE++ + VN+A+ERL + +VRYRFV+D+ +
Sbjct: 218 QIEVVKMDYVNQALERLERNDVRYRFVVDVAGS 120
>gb|BQ661689.1|BQ661689 HM04O09u HM Hordeum vulgare subsp. vulgare cDNA clone HM04O09
3-PRIME, mRNA sequence
Length = 525
Score = 102 bits (217), Expect = 2e-021
Identities = 40/93 (43%), Positives = 66/93 (70%)
Frame = -2 / -2
Query: 506 YLALLKPQGKMILLGLPEKPLQISAFSLVTGGKTLAGSCMGSIRDTQEMMDFAAKHGLTA 327
YLALLK GK++L+G+ +PL + ++ G KT+ GS +GS+ +T+E++ F GLT+
Sbjct: 521 YLALLKMDGKLVLMGVIAEPLSFVSPMVMLGRKTITGSFIGSMDETEEVLKFCVDKGLTS 342
Query: 326 DIELIGTEEVNEAMERLAKGEVRYRFVIDIGNT 228
IE++ + VN+A+ERL + +VRYRFV+D+ +
Sbjct: 341 QIEVVKMDYVNQALERLERNDVRYRFVVDVAGS 243
>gb|CB858813.1|CB858813 HI08G13w HI Hordeum vulgare subsp. vulgare cDNA clone HI08G13
3-PRIME, mRNA sequence
Length = 579
Score = 102 bits (217), Expect = 2e-021
Identities = 40/93 (43%), Positives = 66/93 (70%)
Frame = -2 / -3
Query: 506 YLALLKPQGKMILLGLPEKPLQISAFSLVTGGKTLAGSCMGSIRDTQEMMDFAAKHGLTA 327
YLALLK GK++L+G+ +PL + ++ G KT+ GS +GS+ +T+E++ F GLT+
Sbjct: 442 YLALLKMDGKLVLMGVIAEPLSFVSPMVMLGRKTITGSFIGSMDETEEVLKFCVDKGLTS 263
Query: 326 DIELIGTEEVNEAMERLAKGEVRYRFVIDIGNT 228
IE++ + VN+A+ERL + +VRYRFV+D+ +
Sbjct: 262 QIEVVKMDYVNQALERLERNDVRYRFVVDVAGS 164
>gb|CB881341.1|CB881341 HM09I05w HM Hordeum vulgare subsp. vulgare cDNA clone HM09I05
3-PRIME, mRNA sequence
Length = 621
Score = 102 bits (217), Expect = 2e-021
Identities = 40/93 (43%), Positives = 66/93 (70%)
Frame = -2 / -2
Query: 506 YLALLKPQGKMILLGLPEKPLQISAFSLVTGGKTLAGSCMGSIRDTQEMMDFAAKHGLTA 327
YLALLK GK++L+G+ +PL + ++ G KT+ GS +GS+ +T+E++ F GLT+
Sbjct: 419 YLALLKMDGKLVLMGVIAEPLSFVSPMVMLGRKTITGSFIGSMDETEEVLKFCVDKGLTS 240
Query: 326 DIELIGTEEVNEAMERLAKGEVRYRFVIDIGNT 228
IE++ + VN+A+ERL + +VRYRFV+D+ +
Sbjct: 239 QIEVVKMDYVNQALERLERNDVRYRFVVDVAGS 141
>gb|CB881629.1|CB881629 HM10G11w HM Hordeum vulgare subsp. vulgare cDNA clone HM10G11
3-PRIME, mRNA sequence
Length = 524
Score = 102 bits (217), Expect = 2e-021
Identities = 40/93 (43%), Positives = 66/93 (70%)
Frame = -2 / -1
Query: 506 YLALLKPQGKMILLGLPEKPLQISAFSLVTGGKTLAGSCMGSIRDTQEMMDFAAKHGLTA 327
YLALLK GK++L+G+ +PL + ++ G KT+ GS +GS+ +T+E++ F GLT+
Sbjct: 419 YLALLKMDGKLVLMGVIAEPLSFVSPMVMLGRKTITGSFIGSMDETEEVLKFCVDKGLTS 240
Query: 326 DIELIGTEEVNEAMERLAKGEVRYRFVIDIGNT 228
IE++ + VN+A+ERL + +VRYRFV+D+ +
Sbjct: 239 QIEVVKMDYVNQALERLERNDVRYRFVVDVAGS 141
>gb|AV921205.1|AV921205 AV921205 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags1g09 3', mRNA sequence
Length = 550
Score = 100 bits (212), Expect = 8e-021
Identities = 39/85 (45%), Positives = 59/85 (69%)
Frame = -2 / -3
Query: 482 GKMILLGLPEKPLQISAFSLVTGGKTLAGSCMGSIRDTQEMMDFAAKHGLTADIELIGTE 303
G M+++G + L A +++ GK L G+ + S+RD Q M+DFA KHG+TAD+E++ +
Sbjct: 536 GXMVVVGXXXEXLXXXAXAIIXXGKRLXGNGVXSVRDCQAMLDFAGKHGITADVEVVKMD 357
Query: 302 EVNEAMERLAKGEVRYRFVIDIGNT 228
VN A+ERL K +VRYRFVID+ +
Sbjct: 356 YVNTAVERLEKNDVRYRFVIDVAGS 282
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 233,959,852
Number of Sequences: 312970
Number of extensions: 3381650
Number of successful extensions: 78131
Number of sequences better than 1.0e-020: 44
length of database: 58,378,179
effective HSP length: 50
effective length of database: 42,729,679
effective search space used: 5426669233
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)