TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3198841.2.2
(602 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU987196.1|BU987196 HF14B07r HF Hordeum vulgare subsp. v... 285 6e-077
gb|BU971843.1|BU971843 HB19N11r BC Hordeum vulgare subsp. v... 283 6e-076
gb|BG342914.2|BG342914 HVSMEg0001E07f Hordeum vulgare pre-a... 259 7e-069
gb|BG343770.2|BG343770 HVSMEg0006L08f Hordeum vulgare pre-a... 203 7e-053
gb|BF629044.2|BF629044 HVSMEb0009K16f Hordeum vulgare seedl... 203 7e-053
gb|CA008104.1|CA008104 HU09O15r HU Hordeum vulgare subsp. v... 203 8e-053
gb|AV923368.1|AV923368 AV923368 K. Sato unpublished cDNA li... 203 8e-053
gb|CA008721.1|CA008721 HU11O06r HU Hordeum vulgare subsp. v... 203 8e-053
gb|AV927080.1|AV927080 AV927080 K. Sato unpublished cDNA li... 203 8e-053
gb|CA007573.1|CA007573 HU08G03r HU Hordeum vulgare subsp. v... 203 8e-053
gb|BQ465500.1|BQ465500 HU03N03r HU Hordeum vulgare subsp. v... 203 8e-053
gb|CA008339.1|CA008339 HU10K10r HU Hordeum vulgare subsp. v... 203 8e-053
gb|BQ467017.1|BQ467017 HS02E20r HS Hordeum vulgare subsp. v... 201 3e-052
gb|BQ466698.1|BQ466698 HS01E20T HS Hordeum vulgare subsp. v... 201 3e-052
gb|CA002379.1|CA002379 HS07F02r HS Hordeum vulgare subsp. v... 201 3e-052
gb|BF619842.2|BF619842 HVSMEc0009G18f Hordeum vulgare seedl... 200 7e-052
gb|CA006612.1|CA006612 HU05D02r HU Hordeum vulgare subsp. v... 201 3e-051
gb|BG342949.2|BG342949 HVSMEg0001H04f Hordeum vulgare pre-a... 193 1e-048
gb|AV923846.1|AV923846 AV923846 K. Sato unpublished cDNA li... 193 1e-048
gb|DW474945.1|DW474945 22-n221 Subtracted libraries from ep... 188 2e-047
gb|AV909143.1|AV909143 AV909143 K. Sato unpublished cDNA li... 186 8e-047
gb|CA008597.1|CA008597 HU11H12r HU Hordeum vulgare subsp. v... 119 2e-044
gb|BG369930.2|BG369930 HVSMEi0026J11f Hordeum vulgare 20 DA... 171 2e-043
gb|BF616887.1|BF616887 HVSMEc0013G20f Hordeum vulgare seedl... 117 2e-043
gb|AV923246.1|AV923246 AV923246 K. Sato unpublished cDNA li... 144 9e-042
gb|CA012048.1|CA012048 HT04E17r HT Hordeum vulgare subsp. v... 169 1e-041
gb|BJ464822.1|BJ464822 BJ464822 K. Sato unpublished cDNA li... 110 4e-040
gb|BI959212.1|BI959212 HVSMEn0018K16f Hordeum vulgare rachi... 107 3e-039
gb|BE216717.2|BE216717 HV_CEb0011F08f Hordeum vulgare seedl... 102 8e-038
gb|AL505025.1|AL505025 AL505025 Hordeum vulgare Barke roots... 130 2e-031
gb|CA004832.1|CA004832 HS18N03r HS Hordeum vulgare subsp. v... 133 1e-030
gb|BG309299.2|BG309299 HVSMEc0007D18f Hordeum vulgare seedl... 126 7e-030
gb|BI950307.1|BI950307 HVSMEl0020C23f Hordeum vulgare spike... 104 4e-022
>gb|BU987196.1|BU987196 HF14B07r HF Hordeum vulgare subsp. vulgare cDNA clone HF14B07
5-PRIME, mRNA sequence
Length = 613
Score = 285 bits (616), Expect(2) = 6e-077
Identities = 102/136 (75%), Positives = 118/136 (86%)
Frame = +3 / +1
Query: 162 NTDKINGSNPDDYEKFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDK 341
+T ++NGSN D+YE+FEKG+M YGC HYRRRCRIRAPCCN+IFDCRHCHNE+KNSI+ID
Sbjct: 10 DTARVNGSNSDEYERFEKGLMEYGCAHYRRRCRIRAPCCNDIFDCRHCHNESKNSIRIDT 189
Query: 342 MKRHELPRHEVQQVVCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHCNX 521
+RHELPRHE+QQV+CSLCGTEQEVRQ+CI+CGVCMGKYFC +CKLFDDDVSKQQYHC+
Sbjct: 190 PRRHELPRHELQQVICSLCGTEQEVRQICISCGVCMGKYFCEVCKLFDDDVSKQQYHCHG 369
Query: 522 XXXXXXXXXENSFHCS 569
EN FHCS
Sbjct: 370 CGICRIGGRENFFHCS 417
Score = 217 bits (469), Expect = 3e-056
Identities = 89/117 (76%), Positives = 95/117 (81%)
Frame = -2 / -3
Query: 514 Q*YCCLETSSSKSLHKPQKYFPMQTPQLIHTCRTSCSVPHNEHTTCCTSWRGSSCLFILS 335
Q*YCC ETSSSKSLH QKYFPM TPQL+H CRTSCSVPHNEH TCC+SWRGSSC +S
Sbjct: 362 Q*YCCFETSSSKSLHTSQKYFPMHTPQLMHICRTSCSVPHNEHMTCCSSWRGSSCRLGVS 183
Query: 334 ILMEFLVSLWQCRQSKISLQQGALMRHLLL*CGHP*CIIPFSNFS*SSGFEPLILSV 164
IL+EF SLWQCRQSK+SLQQGA MRHLL *C HP I PFSN S SS EPL L+V
Sbjct: 182 ILIEFFDSLWQCRQSKMSLQQGARMRHLLR*CAHPYSINPFSNLSYSSELEPLTLAV 12
Score = 199 bits (428), Expect = 2e-050
Identities = 87/135 (64%), Positives = 97/135 (71%)
Frame = -3 / -1
Query: 570 LNSGRNSPCLRFYIFHIRCSDTAV*RHHRRRVCTNHRSTSPCKHRN*YILVAPPVQCHTM 391
L+S RNSPC +F IFH SDTAV RHH +R CT HR+TSPC H +* I V P VQCHTM
Sbjct: 418 LSSERNSPCHQFCIFHNHGSDTAVLRHHHQRACTLHRNTSPCIHHS*CIFVVPLVQCHTM 239
Query: 390 SIQPAALHGVEVHASSFYQF*WNS*FHCGSVGNQKFHCSKELLCGISFYNVDTHSALSLS 211
SI PAA+HGVEVH + YQF* NS HCGS GNQK HCSK L+CGI F NV H+ L S
Sbjct: 238 SI*PAAVHGVEVHVA*EYQF*SNSLIHCGSAGNQKCHCSKVLVCGIFFGNVHIHTPLIPS 59
Query: 210 QISHSHQGLNH*SCL 166
QI H+HQ NH* L
Sbjct: 58 QIFHTHQS*NH*PWL 14
Score = 191 bits (411), Expect = 3e-048
Identities = 90/139 (64%), Positives = 105/139 (75%)
Frame = -1 / -2
Query: 575 HF*TVEGILPASDSTYSTSVAVILLFRDIIVEEFAQTTEVLPHANTAIDTYLSHLLFSAT 396
H * V+ ILPA++S YST++AVILLF DII++E A TE+LPHA T D YLS+LLFSAT
Sbjct: 423 HX*AVKEILPATNSAYSTTMAVILLF*DIIIKELAHFTEILPHAYTTADAYLSYLLFSAT 244
Query: 395 Q*AYNLLHFMAWKFMPLHFINFNGILSFIVAVSAIKNFIAARSSYAASPSIMWTPIVHYP 216
Q*AY+LL FMAWKFM IN N IL FIVAV AIKN IAAR SYAAS S+M T I+H
Sbjct: 243 Q*AYDLLQFMAWKFMSPRSINSNRIL*FIVAVPAIKNVIAARCSYAASSSVMCTSILH*S 64
Query: 215 FLKFLIVIRV*TIDLVCIV 159
LK I+IRV TID C++
Sbjct: 63 LLKSFILIRVRTIDPGCVI 7
Score = 182 bits (393), Expect = 1e-045
Identities = 88/135 (65%), Positives = 97/135 (71%)
Frame = +1 / +2
Query: 166 QTRSMVQTLMTMRNLRKG*CTMGVHIIEGDAA*ELLAAMKFLIADTATMKLRIPLKLIK* 345
Q SMV TLM+M++LR+ * +M VHI E DAA E LAAM FLIA TATM RI L+LI
Sbjct: 14 QPGSMVLTLMSMKDLRRD*WSMDVHITEEDAAYEHLAAMTFLIAGTATMNQRIRLELILL 193
Query: 346 RGMNFHAMKCSRLYAHCVALNRRCDKYVSIAVFAWGSTSVVCANSSTMMSLNSSITATDV 525
MNFHAM CSR YAHCVALN+R DKY S V+AWGS SV CA+S MMS NSSITA V
Sbjct: 194 GDMNFHAMNCSRSYAHCVALNKRYDKYASAVVYAWGSISVKCASSLMMMSQNSSITAMVV 373
Query: 526 EYVESEAGRIPSTVQ 570
EY E AGRI T Q
Sbjct: 374 EYAELVAGRISFTAQ 418
Score = 165 bits (354), Expect = 3e-040
Identities = 86/136 (63%), Positives = 100/136 (73%)
Frame = +2 / +3
Query: 164 YRQDQWFKP**L*EI*ERDNALWVSTL*KEMPHKSSLLQ*NF*LPTLPQ*N*EFH*N**N 343
+ Q QWF **+*+I*E N +W+ TL K+MPH S+LLQ*+F*LP LPQ* EF *N* +
Sbjct: 12 HSQGQWF*L**V*KI*EGINGVWMCTLPKKMPHTSTLLQ*HF*LPALPQ*IKEFD*N*YS 191
Query: 344 EEA*TSTP*SAAGCMLIVWH*TGGATSMYQLRCLHGEVLLWFVQTLRR*CL*TAVSLQRM 523
*TSTP*+AAG MLIVWH*T G T+M+QL C+HGEV L VQ L *CL TAVSL +
Sbjct: 192 *AT*TSTP*TAAGHMLIVWH*TRGTTNMHQLWCMHGEVFL*SVQAL***CLKTAVSLPWL 371
Query: 524 WNM*NRRQGEFLPLFK 571
WNM N QGEFL L K
Sbjct: 372 WNMQNWWQGEFLSLLK 419
Score = 22.6 bits (43), Expect(2) = 6e-077
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +2 / +2
Query: 575 GCCYSIALK 601
GCCYS LK
Sbjct: 425 GCCYSTVLK 451
>gb|BU971843.1|BU971843 HB19N11r BC Hordeum vulgare subsp. vulgare cDNA clone HB19N11
5-PRIME, mRNA sequence
Length = 633
Score = 283 bits (612), Expect = 6e-076
Identities = 101/135 (74%), Positives = 117/135 (86%)
Frame = +3 / +2
Query: 162 NTDKINGSNPDDYEKFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDK 341
+T ++NGSN D+YE+FEKG+M YGC HYRRRCRIRAPCCN+IFDCRHCHNE+KNSI+ID
Sbjct: 227 DTARVNGSNSDEYERFEKGLMEYGCAHYRRRCRIRAPCCNDIFDCRHCHNESKNSIRIDT 406
Query: 342 MKRHELPRHEVQQVVCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHCNX 521
+RHELPRHE+QQV+CSLCGTEQEVRQ+CI+CGVCMGKYFC +CKLFDDDVSKQQYHC+
Sbjct: 407 PRRHELPRHELQQVICSLCGTEQEVRQICISCGVCMGKYFCEVCKLFDDDVSKQQYHCHG 586
Query: 522 XXXXXXXXXENSFHC 566
EN FHC
Sbjct: 587 CGICRIGGRENFFHC 631
Score = 217 bits (469), Expect = 3e-056
Identities = 89/117 (76%), Positives = 95/117 (81%)
Frame = -2 / -1
Query: 514 Q*YCCLETSSSKSLHKPQKYFPMQTPQLIHTCRTSCSVPHNEHTTCCTSWRGSSCLFILS 335
Q*YCC ETSSSKSLH QKYFPM TPQL+H CRTSCSVPHNEH TCC+SWRGSSC +S
Sbjct: 579 Q*YCCFETSSSKSLHTSQKYFPMHTPQLMHICRTSCSVPHNEHMTCCSSWRGSSCRLGVS 400
Query: 334 ILMEFLVSLWQCRQSKISLQQGALMRHLLL*CGHP*CIIPFSNFS*SSGFEPLILSV 164
IL+EF SLWQCRQSK+SLQQGA MRHLL *C HP I PFSN S SS EPL L+V
Sbjct: 399 ILIEFFDSLWQCRQSKMSLQQGARMRHLLR*CAHPYSINPFSNLSYSSELEPLTLAV 229
Score = 197 bits (424), Expect = 6e-050
Identities = 86/134 (64%), Positives = 96/134 (71%)
Frame = -3 / -2
Query: 567 NSGRNSPCLRFYIFHIRCSDTAV*RHHRRRVCTNHRSTSPCKHRN*YILVAPPVQCHTMS 388
+S RNSPC +F IFH SDTAV RHH +R CT HR+TSPC H +* I V P VQCHTMS
Sbjct: 632 SSERNSPCHQFCIFHNHGSDTAVLRHHHQRACTLHRNTSPCIHHS*CIFVVPLVQCHTMS 453
Query: 387 IQPAALHGVEVHASSFYQF*WNS*FHCGSVGNQKFHCSKELLCGISFYNVDTHSALSLSQ 208
I PAA+HGVEVH + YQF* NS HCGS GNQK HCSK L+CGI F NV H+ L SQ
Sbjct: 452 I*PAAVHGVEVHVA*EYQF*SNSLIHCGSAGNQKCHCSKVLVCGIFFGNVHIHTPLIPSQ 273
Query: 207 ISHSHQGLNH*SCL 166
I H+HQ NH* L
Sbjct: 272 IFHTHQS*NH*PWL 231
Score = 187 bits (403), Expect = 4e-047
Identities = 88/135 (65%), Positives = 103/135 (76%)
Frame = -1 / -3
Query: 563 VEGILPASDSTYSTSVAVILLFRDIIVEEFAQTTEVLPHANTAIDTYLSHLLFSATQ*AY 384
V+ ILPA++S YST++AVILLF DII++E A TE+LPHA T D YLS+LLFSATQ*AY
Sbjct: 628 VKEILPATNSAYSTTMAVILLF*DIIIKELAHFTEILPHAYTTADAYLSYLLFSATQ*AY 449
Query: 383 NLLHFMAWKFMPLHFINFNGILSFIVAVSAIKNFIAARSSYAASPSIMWTPIVHYPFLKF 204
+LL FMAWKFM IN N IL FIVAV AIKN IAAR SYAAS S+M T I+H LK
Sbjct: 448 DLLQFMAWKFMSPRSINSNRIL*FIVAVPAIKNVIAARCSYAASSSVMCTSILH*SLLKS 269
Query: 203 LIVIRV*TIDLVCIV 159
I+IRV TID C++
Sbjct: 268 FILIRVRTIDPGCVI 224
Score = 180 bits (388), Expect = 5e-045
Identities = 87/133 (65%), Positives = 96/133 (72%)
Frame = +1 / +3
Query: 166 QTRSMVQTLMTMRNLRKG*CTMGVHIIEGDAA*ELLAAMKFLIADTATMKLRIPLKLIK* 345
Q SMV TLM+M++LR+ * +M VHI E DAA E LAAM FLIA TATM RI L+LI
Sbjct: 231 QPGSMVLTLMSMKDLRRD*WSMDVHITEEDAAYEHLAAMTFLIAGTATMNQRIRLELILL 410
Query: 346 RGMNFHAMKCSRLYAHCVALNRRCDKYVSIAVFAWGSTSVVCANSSTMMSLNSSITATDV 525
MNFHAM CSR YAHCVALN+R DKY S V+AWGS SV CA+S MMS NSSITA V
Sbjct: 411 GDMNFHAMNCSRSYAHCVALNKRYDKYASAVVYAWGSISVKCASSLMMMSQNSSITAMVV 590
Query: 526 EYVESEAGRIPST 564
EY E AGRI T
Sbjct: 591 EYAELVAGRISFT 629
Score = 162 bits (349), Expect = 1e-039
Identities = 85/134 (63%), Positives = 99/134 (73%)
Frame = +2 / +1
Query: 164 YRQDQWFKP**L*EI*ERDNALWVSTL*KEMPHKSSLLQ*NF*LPTLPQ*N*EFH*N**N 343
+ Q QWF **+*+I*E N +W+ TL K+MPH S+LLQ*+F*LP LPQ* EF *N* +
Sbjct: 229 HSQGQWF*L**V*KI*EGINGVWMCTLPKKMPHTSTLLQ*HF*LPALPQ*IKEFD*N*YS 408
Query: 344 EEA*TSTP*SAAGCMLIVWH*TGGATSMYQLRCLHGEVLLWFVQTLRR*CL*TAVSLQRM 523
*TSTP*+AAG MLIVWH*T G T+M+QL C+HGEV L VQ L *CL TAVSL +
Sbjct: 409 *AT*TSTP*TAAGHMLIVWH*TRGTTNMHQLWCMHGEVFL*SVQAL***CLKTAVSLPWL 588
Query: 524 WNM*NRRQGEFLPL 565
WNM N QGEFL L
Sbjct: 589 WNMQNWWQGEFLSL 630
>gb|BG342914.2|BG342914 HVSMEg0001E07f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0001E07f, mRNA sequence
Length = 823
Score = 259 bits (561), Expect = 7e-069
Identities = 95/137 (69%), Positives = 112/137 (81%)
Frame = +3 / +2
Query: 162 NTDKINGSNPDDYEKFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDK 341
+T ++NGSN D+YE+FEKG+M YGC HYRR+CRI APCCN+IFDCRHCHNE+KNSI+ID
Sbjct: 104 DTARVNGSNSDEYERFEKGLMEYGCAHYRRKCRIPAPCCNDIFDCRHCHNESKNSIRIDT 283
Query: 342 MKRHELPRHEVQQVVCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHCNX 521
+RHEL RHE+QQV+CSLCGTEQEVRQ+CI+CGVCMGKYFC + KLFDDD SKQQ HC+
Sbjct: 284 PRRHELSRHELQQVICSLCGTEQEVRQICISCGVCMGKYFCEMSKLFDDDGSKQQDHCHG 463
Query: 522 XXXXXXXXXENSFHCSK 572
EN FH K
Sbjct: 464 CGICKNGGRENFFHLVK 514
Score = 198 bits (427), Expect = 2e-050
Identities = 84/117 (71%), Positives = 90/117 (76%)
Frame = -2 / -2
Query: 514 Q*YCCLETSSSKSLHKPQKYFPMQTPQLIHTCRTSCSVPHNEHTTCCTSWRGSSCLFILS 335
Q* CC E SSSKSL QKYFPM TPQL+H CRTSCSVPHNEH TCC+SWR SSC +S
Sbjct: 456 Q*SCCFEPSSSKSLLISQKYFPMHTPQLMHICRTSCSVPHNEHMTCCSSWRESSCRLGVS 277
Query: 334 ILMEFLVSLWQCRQSKISLQQGALMRHLLL*CGHP*CIIPFSNFS*SSGFEPLILSV 164
IL+EF SLWQCRQSK+SLQQGA MRH L *C HP I PFSN S SS EPL L+V
Sbjct: 276 ILIEFFDSLWQCRQSKMSLQQGAGMRHFLR*CAHPYSINPFSNLSYSSELEPLTLAV 106
Score = 184 bits (396), Expect = 4e-046
Identities = 81/133 (60%), Positives = 91/133 (68%)
Frame = -3 / -3
Query: 564 SGRNSPCLRFYIFHIRCSDTAV*RHHRRRVCTNHRSTSPCKHRN*YILVAPPVQCHTMSI 385
S RN PC F IFH SD AV HH +R C+ HR+TSPC H +* I V P VQCHTMSI
Sbjct: 506 SERNFPCHHFCIFHNHGSDPAVLSHHHQRACSFHRNTSPCIHHS*CIFVVPLVQCHTMSI 327
Query: 384 QPAALHGVEVHASSFYQF*WNS*FHCGSVGNQKFHCSKELLCGISFYNVDTHSALSLSQI 205
PAA+HGV+VH + YQF* NS HCGS GNQK HCSK L+CGI F NV H+ L SQI
Sbjct: 326 *PAAVHGVKVHVA*EYQF*SNSLIHCGSAGNQKCHCSKVLVCGIFFGNVHIHTPLIPSQI 147
Query: 204 SHSHQGLNH*SCL 166
H+HQ NH* L
Sbjct: 146 FHTHQS*NH*PWL 108
Score = 165 bits (354), Expect = 3e-040
Identities = 83/138 (60%), Positives = 97/138 (70%)
Frame = -1 / -1
Query: 572 F*TVEGILPASDSTYSTSVAVILLFRDIIVEEFAQTTEVLPHANTAIDTYLSHLLFSATQ 393
F V+ I PA+ YST++AVILLF II++E A TE+LPHA T D YLS+LLFSATQ
Sbjct: 514 FNQVKEIFPATIFAYSTTMAVILLF*AIIIKELAHFTEILPHAYTTADAYLSYLLFSATQ 335
Query: 392 *AYNLLHFMAWKFMPLHFINFNGILSFIVAVSAIKNFIAARSSYAASPSIMWTPIVHYPF 213
*AY+LL FMA KFM IN N IL FIVAV AIKN IAAR YAA S+M T I+H
Sbjct: 334 *AYDLLQFMA*KFMSPRSINSNRIL*FIVAVPAIKNVIAARCWYAAFSSVMCTSILH*SL 155
Query: 212 LKFLIVIRV*TIDLVCIV 159
LK I+IRV TID C++
Sbjct: 154 LKSFILIRVRTIDPGCVI 101
Score = 164 bits (353), Expect = 3e-040
Identities = 80/133 (60%), Positives = 94/133 (70%)
Frame = +1 / +3
Query: 166 QTRSMVQTLMTMRNLRKG*CTMGVHIIEGDAA*ELLAAMKFLIADTATMKLRIPLKLIK* 345
Q SMV TLM+M++LR+ * +M VHI E +AA + LAAM FLIA TATM RI L+LI
Sbjct: 108 QPGSMVLTLMSMKDLRRD*WSMDVHITEENAAYQHLAAMTFLIAGTATMNQRIRLELILL 287
Query: 346 RGMNFHAMKCSRLYAHCVALNRRCDKYVSIAVFAWGSTSVVCANSSTMMSLNSSITATDV 525
MNFHAM CSR YAHCVALN+R DKY S V+AWGS SV A+S MM+ NS ITA V
Sbjct: 288 GDMNFHAMNCSRSYAHCVALNKRYDKYASAVVYAWGSISVK*ASSLMMMAQNSRITAMVV 467
Query: 526 EYVESEAGRIPST 564
EY + AG+I T
Sbjct: 468 EYAKMVAGKISFT 506
Score = 144 bits (308), Expect = 6e-034
Identities = 79/134 (58%), Positives = 94/134 (70%)
Frame = +2 / +1
Query: 164 YRQDQWFKP**L*EI*ERDNALWVSTL*KEMPHKSSLLQ*NF*LPTLPQ*N*EFH*N**N 343
+ Q QWF **+*+I*E N +W+ TL K+MPH S+LLQ*+F*LP LPQ* EF *N* +
Sbjct: 106 HSQGQWF*L**V*KI*EGINGVWMCTLPKKMPHTSTLLQ*HF*LPALPQ*IKEFD*N*YS 285
Query: 344 EEA*TSTP*SAAGCMLIVWH*TGGATSMYQLRCLHGEVLLWFVQTLRR*CL*TAVSLQRM 523
*T TP*+AAG MLIVWH*T G T+M+QL C+HGEV L Q L * L TA SL +
Sbjct: 286 *AT*TFTP*TAAGHMLIVWH*TRGTTNMHQLWCMHGEVFL*NEQAL***WLKTAGSLPWL 465
Query: 524 WNM*NRRQGEFLPL 565
WNM QG+FL L
Sbjct: 466 WNMQKWWQGKFLSL 507
>gb|BG343770.2|BG343770 HVSMEg0006L08f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0006L08f, mRNA sequence
Length = 996
Score = 203 bits (438), Expect(2) = 7e-053
Identities = 67/123 (54%), Positives = 87/123 (70%)
Frame = +3 / +2
Query: 204 KFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDKMKRHELPRHEVQQV 383
+ + G +GC HY RRCRIRAPCC E+F CRHCHN+ KNS+++D + RH++PRHE+ +V
Sbjct: 119 QMDLGAEQHGCEHYTRRCRIRAPCCGEVFGCRHCHNQAKNSLEVDVLDRHDIPRHEISKV 298
Query: 384 VCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHCNXXXXXXXXXXENSFH 563
+CSLC EQ+V++ C CG CMGKYFC C FDDD+SK QYHC+ +N FH
Sbjct: 299 ICSLCNKEQDVQKNCSGCGACMGKYFCEKCNFFDDDISKNQYHCDGCGICRTGGMDNFFH 478
Query: 564 CSK 572
C K
Sbjct: 479 CEK 487
Score = 122 bits (262), Expect = 1e-027
Identities = 60/121 (49%), Positives = 64/121 (52%)
Frame = -2 / -1
Query: 571 FEQWKEFSXXXXXXXXXXLQ*YCCLETSSSKSLHKPQKYFPMQTPQLIHTCRTSCSVPHN 392
F QWK+ S Q*Y E SSSK LH QKYFPM PQ TSCS+
Sbjct: 486 FSQWKKLSMPPVLQMPHPSQ*YWFFEISSSKKLHFSQKYFPMHAPQPEQFFCTSCSLLQR 307
Query: 391 EHTTCCTSWRGSSCLFILSILMEFLVSLWQCRQSKISLQQGALMRHLLL*CGHP*CIIPF 212
E T SWRG SC S EFL LWQCRQ K S QQGA + HLL+*C P C P
Sbjct: 306 EQMTLLISWRGMSCRSRTSTSSEFLAWLWQCRQPKTSPQQGARILHLLV*CSQPCCSAPK 127
Query: 211 S 209
S
Sbjct: 126 S 124
Score = 23.5 bits (45), Expect(2) = 7e-053
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +2 / +2
Query: 569 KSGCCYSIALK 601
K GCCYS LK
Sbjct: 485 KCGCCYSNVLK 517
>gb|BF629044.2|BF629044 HVSMEb0009K16f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0009K16f, mRNA sequence
Length = 852
Score = 203 bits (438), Expect(2) = 7e-053
Identities = 67/123 (54%), Positives = 87/123 (70%)
Frame = +3 / +3
Query: 204 KFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDKMKRHELPRHEVQQV 383
+ + G +GC HY RRCRIRAPCC E+F CRHCHN+ KNS+++D + RH++PRHE+ +V
Sbjct: 150 QMDLGAEQHGCEHYTRRCRIRAPCCGEVFGCRHCHNQAKNSLEVDVLDRHDIPRHEISKV 329
Query: 384 VCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHCNXXXXXXXXXXENSFH 563
+CSLC EQ+V++ C CG CMGKYFC C FDDD+SK QYHC+ +N FH
Sbjct: 330 ICSLCNKEQDVQKNCSGCGACMGKYFCEKCNFFDDDISKNQYHCDGCGICRTGGMDNFFH 509
Query: 564 CSK 572
C K
Sbjct: 510 CEK 518
Score = 122 bits (262), Expect = 1e-027
Identities = 60/121 (49%), Positives = 64/121 (52%)
Frame = -2 / -3
Query: 571 FEQWKEFSXXXXXXXXXXLQ*YCCLETSSSKSLHKPQKYFPMQTPQLIHTCRTSCSVPHN 392
F QWK+ S Q*Y E SSSK LH QKYFPM PQ TSCS+
Sbjct: 517 FSQWKKLSMPPVLQMPHPSQ*YWFFEISSSKKLHFSQKYFPMHAPQPEQFFCTSCSLLQR 338
Query: 391 EHTTCCTSWRGSSCLFILSILMEFLVSLWQCRQSKISLQQGALMRHLLL*CGHP*CIIPF 212
E T SWRG SC S EFL LWQCRQ K S QQGA + HLL+*C P C P
Sbjct: 337 EQMTLLISWRGMSCRSRTSTSSEFLAWLWQCRQPKTSPQQGARILHLLV*CSQPCCSAPK 158
Query: 211 S 209
S
Sbjct: 157 S 155
Score = 23.5 bits (45), Expect(2) = 7e-053
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +2 / +3
Query: 569 KSGCCYSIALK 601
K GCCYS LK
Sbjct: 516 KCGCCYSNVLK 548
>gb|CA008104.1|CA008104 HU09O15r HU Hordeum vulgare subsp. vulgare cDNA clone HU09O15
5-PRIME, mRNA sequence
Length = 651
Score = 203 bits (438), Expect(2) = 8e-053
Identities = 67/123 (54%), Positives = 87/123 (70%)
Frame = +3 / +2
Query: 204 KFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDKMKRHELPRHEVQQV 383
+ + G +GC HY RRCRIRAPCC E+F CRHCHN+ KNS+++D + RH++PRHE+ +V
Sbjct: 158 QMDLGAEQHGCEHYTRRCRIRAPCCGEVFGCRHCHNQAKNSLEVDVLDRHDIPRHEISKV 337
Query: 384 VCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHCNXXXXXXXXXXENSFH 563
+CSLC EQ+V++ C CG CMGKYFC C FDDD+SK QYHC+ +N FH
Sbjct: 338 ICSLCNKEQDVQKNCSGCGACMGKYFCEKCNFFDDDISKNQYHCDGCGICRTGGMDNFFH 517
Query: 564 CSK 572
C K
Sbjct: 518 CEK 526
Score = 122 bits (262), Expect = 1e-027
Identities = 60/121 (49%), Positives = 64/121 (52%)
Frame = -2 / -1
Query: 571 FEQWKEFSXXXXXXXXXXLQ*YCCLETSSSKSLHKPQKYFPMQTPQLIHTCRTSCSVPHN 392
F QWK+ S Q*Y E SSSK LH QKYFPM PQ TSCS+
Sbjct: 525 FSQWKKLSMPPVLQMPHPSQ*YWFFEISSSKKLHFSQKYFPMHAPQPEQFFCTSCSLLQR 346
Query: 391 EHTTCCTSWRGSSCLFILSILMEFLVSLWQCRQSKISLQQGALMRHLLL*CGHP*CIIPF 212
E T SWRG SC S EFL LWQCRQ K S QQGA + HLL+*C P C P
Sbjct: 345 EQMTLLISWRGMSCRSRTSTSSEFLAWLWQCRQPKTSPQQGARILHLLV*CSQPCCSAPK 166
Query: 211 S 209
S
Sbjct: 165 S 163
Score = 23.5 bits (45), Expect(2) = 8e-053
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +2 / +2
Query: 569 KSGCCYSIALK 601
K GCCYS LK
Sbjct: 524 KCGCCYSNVLK 556
>gb|AV923368.1|AV923368 AV923368 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd12n20 5', mRNA sequence
Length = 645
Score = 203 bits (438), Expect(2) = 8e-053
Identities = 67/123 (54%), Positives = 87/123 (70%)
Frame = +3 / +1
Query: 204 KFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDKMKRHELPRHEVQQV 383
+ + G +GC HY RRCRIRAPCC E+F CRHCHN+ KNS+++D + RH++PRHE+ +V
Sbjct: 169 QMDLGAEQHGCEHYTRRCRIRAPCCGEVFGCRHCHNQAKNSLEVDVLDRHDIPRHEISKV 348
Query: 384 VCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHCNXXXXXXXXXXENSFH 563
+CSLC EQ+V++ C CG CMGKYFC C FDDD+SK QYHC+ +N FH
Sbjct: 349 ICSLCNKEQDVQKNCSGCGACMGKYFCEKCNFFDDDISKNQYHCDGCGICRTGGMDNFFH 528
Query: 564 CSK 572
C K
Sbjct: 529 CEK 537
Score = 122 bits (262), Expect = 1e-027
Identities = 60/121 (49%), Positives = 64/121 (52%)
Frame = -2 / -2
Query: 571 FEQWKEFSXXXXXXXXXXLQ*YCCLETSSSKSLHKPQKYFPMQTPQLIHTCRTSCSVPHN 392
F QWK+ S Q*Y E SSSK LH QKYFPM PQ TSCS+
Sbjct: 536 FSQWKKLSMPPVLQMPHPSQ*YWFFEISSSKKLHFSQKYFPMHAPQPEQFFCTSCSLLQR 357
Query: 391 EHTTCCTSWRGSSCLFILSILMEFLVSLWQCRQSKISLQQGALMRHLLL*CGHP*CIIPF 212
E T SWRG SC S EFL LWQCRQ K S QQGA + HLL+*C P C P
Sbjct: 356 EQMTLLISWRGMSCRSRTSTSSEFLAWLWQCRQPKTSPQQGARILHLLV*CSQPCCSAPK 177
Query: 211 S 209
S
Sbjct: 176 S 174
Score = 23.5 bits (45), Expect(2) = 8e-053
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +2 / +1
Query: 569 KSGCCYSIALK 601
K GCCYS LK
Sbjct: 535 KCGCCYSNVLK 567
>gb|CA008721.1|CA008721 HU11O06r HU Hordeum vulgare subsp. vulgare cDNA clone HU11O06
5-PRIME, mRNA sequence
Length = 610
Score = 203 bits (438), Expect(2) = 8e-053
Identities = 67/123 (54%), Positives = 87/123 (70%)
Frame = +3 / +2
Query: 204 KFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDKMKRHELPRHEVQQV 383
+ + G +GC HY RRCRIRAPCC E+F CRHCHN+ KNS+++D + RH++PRHE+ +V
Sbjct: 158 QMDLGAEQHGCEHYTRRCRIRAPCCGEVFGCRHCHNQAKNSLEVDVLDRHDIPRHEISKV 337
Query: 384 VCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHCNXXXXXXXXXXENSFH 563
+CSLC EQ+V++ C CG CMGKYFC C FDDD+SK QYHC+ +N FH
Sbjct: 338 ICSLCNKEQDVQKNCSGCGACMGKYFCEKCNFFDDDISKNQYHCDGCGICRTGGMDNFFH 517
Query: 564 CSK 572
C K
Sbjct: 518 CEK 526
Score = 122 bits (262), Expect = 1e-027
Identities = 60/121 (49%), Positives = 64/121 (52%)
Frame = -2 / -2
Query: 571 FEQWKEFSXXXXXXXXXXLQ*YCCLETSSSKSLHKPQKYFPMQTPQLIHTCRTSCSVPHN 392
F QWK+ S Q*Y E SSSK LH QKYFPM PQ TSCS+
Sbjct: 525 FSQWKKLSMPPVLQMPHPSQ*YWFFEISSSKKLHFSQKYFPMHAPQPEQFFCTSCSLLQR 346
Query: 391 EHTTCCTSWRGSSCLFILSILMEFLVSLWQCRQSKISLQQGALMRHLLL*CGHP*CIIPF 212
E T SWRG SC S EFL LWQCRQ K S QQGA + HLL+*C P C P
Sbjct: 345 EQMTLLISWRGMSCRSRTSTSSEFLAWLWQCRQPKTSPQQGARILHLLV*CSQPCCSAPK 166
Query: 211 S 209
S
Sbjct: 165 S 163
Score = 23.5 bits (45), Expect(2) = 8e-053
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +2 / +2
Query: 569 KSGCCYSIALK 601
K GCCYS LK
Sbjct: 524 KCGCCYSNVLK 556
>gb|AV927080.1|AV927080 AV927080 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd26k21 5', mRNA sequence
Length = 605
Score = 203 bits (438), Expect(2) = 8e-053
Identities = 67/123 (54%), Positives = 87/123 (70%)
Frame = +3 / +2
Query: 204 KFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDKMKRHELPRHEVQQV 383
+ + G +GC HY RRCRIRAPCC E+F CRHCHN+ KNS+++D + RH++PRHE+ +V
Sbjct: 134 QMDLGAEQHGCEHYTRRCRIRAPCCGEVFGCRHCHNQAKNSLEVDVLDRHDIPRHEISKV 313
Query: 384 VCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHCNXXXXXXXXXXENSFH 563
+CSLC EQ+V++ C CG CMGKYFC C FDDD+SK QYHC+ +N FH
Sbjct: 314 ICSLCNKEQDVQKNCSGCGACMGKYFCEKCNFFDDDISKNQYHCDGCGICRTGGMDNFFH 493
Query: 564 CSK 572
C K
Sbjct: 494 CEK 502
Score = 122 bits (262), Expect = 1e-027
Identities = 60/121 (49%), Positives = 64/121 (52%)
Frame = -2 / -3
Query: 571 FEQWKEFSXXXXXXXXXXLQ*YCCLETSSSKSLHKPQKYFPMQTPQLIHTCRTSCSVPHN 392
F QWK+ S Q*Y E SSSK LH QKYFPM PQ TSCS+
Sbjct: 501 FSQWKKLSMPPVLQMPHPSQ*YWFFEISSSKKLHFSQKYFPMHAPQPEQFFCTSCSLLQR 322
Query: 391 EHTTCCTSWRGSSCLFILSILMEFLVSLWQCRQSKISLQQGALMRHLLL*CGHP*CIIPF 212
E T SWRG SC S EFL LWQCRQ K S QQGA + HLL+*C P C P
Sbjct: 321 EQMTLLISWRGMSCRSRTSTSSEFLAWLWQCRQPKTSPQQGARILHLLV*CSQPCCSAPK 142
Query: 211 S 209
S
Sbjct: 141 S 139
Score = 23.5 bits (45), Expect(2) = 8e-053
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +2 / +2
Query: 569 KSGCCYSIALK 601
K GCCYS LK
Sbjct: 500 KCGCCYSNVLK 532
>gb|CA007573.1|CA007573 HU08G03r HU Hordeum vulgare subsp. vulgare cDNA clone HU08G03
5-PRIME, mRNA sequence
Length = 592
Score = 203 bits (438), Expect(2) = 8e-053
Identities = 67/123 (54%), Positives = 87/123 (70%)
Frame = +3 / +1
Query: 204 KFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDKMKRHELPRHEVQQV 383
+ + G +GC HY RRCRIRAPCC E+F CRHCHN+ KNS+++D + RH++PRHE+ +V
Sbjct: 124 QMDLGAEQHGCEHYTRRCRIRAPCCGEVFGCRHCHNQAKNSLEVDVLDRHDIPRHEISKV 303
Query: 384 VCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHCNXXXXXXXXXXENSFH 563
+CSLC EQ+V++ C CG CMGKYFC C FDDD+SK QYHC+ +N FH
Sbjct: 304 ICSLCNKEQDVQKNCSGCGACMGKYFCEKCNFFDDDISKNQYHCDGCGICRTGGMDNFFH 483
Query: 564 CSK 572
C K
Sbjct: 484 CEK 492
Score = 122 bits (262), Expect = 1e-027
Identities = 60/121 (49%), Positives = 64/121 (52%)
Frame = -2 / -3
Query: 571 FEQWKEFSXXXXXXXXXXLQ*YCCLETSSSKSLHKPQKYFPMQTPQLIHTCRTSCSVPHN 392
F QWK+ S Q*Y E SSSK LH QKYFPM PQ TSCS+
Sbjct: 491 FSQWKKLSMPPVLQMPHPSQ*YWFFEISSSKKLHFSQKYFPMHAPQPEQFFCTSCSLLQR 312
Query: 391 EHTTCCTSWRGSSCLFILSILMEFLVSLWQCRQSKISLQQGALMRHLLL*CGHP*CIIPF 212
E T SWRG SC S EFL LWQCRQ K S QQGA + HLL+*C P C P
Sbjct: 311 EQMTLLISWRGMSCRSRTSTSSEFLAWLWQCRQPKTSPQQGARILHLLV*CSQPCCSAPK 132
Query: 211 S 209
S
Sbjct: 131 S 129
Score = 23.5 bits (45), Expect(2) = 8e-053
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +2 / +1
Query: 569 KSGCCYSIALK 601
K GCCYS LK
Sbjct: 490 KCGCCYSNVLK 522
>gb|BQ465500.1|BQ465500 HU03N03r HU Hordeum vulgare subsp. vulgare cDNA clone HU03N03
5-PRIME, mRNA sequence
Length = 575
Score = 203 bits (438), Expect(2) = 8e-053
Identities = 67/123 (54%), Positives = 87/123 (70%)
Frame = +3 / +1
Query: 204 KFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDKMKRHELPRHEVQQV 383
+ + G +GC HY RRCRIRAPCC E+F CRHCHN+ KNS+++D + RH++PRHE+ +V
Sbjct: 52 QMDLGAEQHGCEHYTRRCRIRAPCCGEVFGCRHCHNQAKNSLEVDVLDRHDIPRHEISKV 231
Query: 384 VCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHCNXXXXXXXXXXENSFH 563
+CSLC EQ+V++ C CG CMGKYFC C FDDD+SK QYHC+ +N FH
Sbjct: 232 ICSLCNKEQDVQKNCSGCGACMGKYFCEKCNFFDDDISKNQYHCDGCGICRTGGMDNFFH 411
Query: 564 CSK 572
C K
Sbjct: 412 CEK 420
Score = 122 bits (262), Expect = 1e-027
Identities = 60/121 (49%), Positives = 64/121 (52%)
Frame = -2 / -1
Query: 571 FEQWKEFSXXXXXXXXXXLQ*YCCLETSSSKSLHKPQKYFPMQTPQLIHTCRTSCSVPHN 392
F QWK+ S Q*Y E SSSK LH QKYFPM PQ TSCS+
Sbjct: 419 FSQWKKLSMPPVLQMPHPSQ*YWFFEISSSKKLHFSQKYFPMHAPQPEQFFCTSCSLLQR 240
Query: 391 EHTTCCTSWRGSSCLFILSILMEFLVSLWQCRQSKISLQQGALMRHLLL*CGHP*CIIPF 212
E T SWRG SC S EFL LWQCRQ K S QQGA + HLL+*C P C P
Sbjct: 239 EQMTLLISWRGMSCRSRTSTSSEFLAWLWQCRQPKTSPQQGARILHLLV*CSQPCCSAPK 60
Query: 211 S 209
S
Sbjct: 59 S 57
Score = 23.5 bits (45), Expect(2) = 8e-053
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +2 / +1
Query: 569 KSGCCYSIALK 601
K GCCYS LK
Sbjct: 418 KCGCCYSNVLK 450
>gb|CA008339.1|CA008339 HU10K10r HU Hordeum vulgare subsp. vulgare cDNA clone HU10K10
5-PRIME, mRNA sequence
Length = 532
Score = 203 bits (438), Expect(2) = 8e-053
Identities = 67/123 (54%), Positives = 87/123 (70%)
Frame = +3 / +1
Query: 204 KFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDKMKRHELPRHEVQQV 383
+ + G +GC HY RRCRIRAPCC E+F CRHCHN+ KNS+++D + RH++PRHE+ +V
Sbjct: 124 QMDLGAEQHGCEHYTRRCRIRAPCCGEVFGCRHCHNQAKNSLEVDVLDRHDIPRHEISKV 303
Query: 384 VCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHCNXXXXXXXXXXENSFH 563
+CSLC EQ+V++ C CG CMGKYFC C FDDD+SK QYHC+ +N FH
Sbjct: 304 ICSLCNKEQDVQKNCSGCGACMGKYFCEKCNFFDDDISKNQYHCDGCGICRTGGMDNFFH 483
Query: 564 CSK 572
C K
Sbjct: 484 CEK 492
Score = 122 bits (262), Expect = 1e-027
Identities = 60/121 (49%), Positives = 64/121 (52%)
Frame = -2 / -3
Query: 571 FEQWKEFSXXXXXXXXXXLQ*YCCLETSSSKSLHKPQKYFPMQTPQLIHTCRTSCSVPHN 392
F QWK+ S Q*Y E SSSK LH QKYFPM PQ TSCS+
Sbjct: 491 FSQWKKLSMPPVLQMPHPSQ*YWFFEISSSKKLHFSQKYFPMHAPQPEQFFCTSCSLLQR 312
Query: 391 EHTTCCTSWRGSSCLFILSILMEFLVSLWQCRQSKISLQQGALMRHLLL*CGHP*CIIPF 212
E T SWRG SC S EFL LWQCRQ K S QQGA + HLL+*C P C P
Sbjct: 311 EQMTLLISWRGMSCRSRTSTSSEFLAWLWQCRQPKTSPQQGARILHLLV*CSQPCCSAPK 132
Query: 211 S 209
S
Sbjct: 131 S 129
Score = 23.5 bits (45), Expect(2) = 8e-053
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +2 / +1
Query: 569 KSGCCYSIALK 601
K GCCYS LK
Sbjct: 490 KCGCCYSNVLK 522
>gb|BQ467017.1|BQ467017 HS02E20r HS Hordeum vulgare subsp. vulgare cDNA clone HS02E20
5-PRIME, mRNA sequence
Length = 587
Score = 201 bits (434), Expect(2) = 3e-052
Identities = 66/115 (57%), Positives = 84/115 (73%)
Frame = +3 / +2
Query: 228 YGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDKMKRHELPRHEVQQVVCSLCGTE 407
+GC HY RRCRIRAPCC E+F CRHCHN+ KNS+++D + RH++PRHE+ +V+CSLC E
Sbjct: 11 HGCEHYTRRCRIRAPCCGEVFGCRHCHNQAKNSLEVDVLDRHDIPRHEISKVICSLCNKE 190
Query: 408 QEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHCNXXXXXXXXXXENSFHCSK 572
Q+V++ C CG CMGKYFC C FDDD+SK QYHC+ +N FHC K
Sbjct: 191 QDVQKNCSGCGACMGKYFCEKCNFFDDDISKNQYHCDGCGICRTGGMDNFFHCEK 355
Score = 118 bits (252), Expect = 3e-026
Identities = 57/114 (50%), Positives = 61/114 (53%)
Frame = -2 / -3
Query: 571 FEQWKEFSXXXXXXXXXXLQ*YCCLETSSSKSLHKPQKYFPMQTPQLIHTCRTSCSVPHN 392
F QWK+ S Q*Y E SSSK LH QKYFPM PQ TSCS+
Sbjct: 354 FSQWKKLSMPPVLQMPHPSQ*YWFFEISSSKKLHFSQKYFPMHAPQPEQFFCTSCSLLQR 175
Query: 391 EHTTCCTSWRGSSCLFILSILMEFLVSLWQCRQSKISLQQGALMRHLLL*CGHP 230
E T SWRG SC S EFL LWQCRQ K S QQGA + HLL+*C P
Sbjct: 174 EQMTLLISWRGMSCRSRTSTSSEFLAWLWQCRQPKTSPQQGARILHLLV*CSQP 13
Score = 23.5 bits (45), Expect(2) = 3e-052
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +2 / +2
Query: 569 KSGCCYSIALK 601
K GCCYS LK
Sbjct: 353 KCGCCYSNVLK 385
>gb|BQ466698.1|BQ466698 HS01E20T HS Hordeum vulgare subsp. vulgare cDNA clone HS01E20
5-PRIME, mRNA sequence
Length = 583
Score = 201 bits (434), Expect(2) = 3e-052
Identities = 66/115 (57%), Positives = 84/115 (73%)
Frame = +3 / +2
Query: 228 YGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDKMKRHELPRHEVQQVVCSLCGTE 407
+GC HY RRCRIRAPCC E+F CRHCHN+ KNS+++D + RH++PRHE+ +V+CSLC E
Sbjct: 11 HGCEHYTRRCRIRAPCCGEVFGCRHCHNQAKNSLEVDVLDRHDIPRHEISKVICSLCNKE 190
Query: 408 QEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHCNXXXXXXXXXXENSFHCSK 572
Q+V++ C CG CMGKYFC C FDDD+SK QYHC+ +N FHC K
Sbjct: 191 QDVQKNCSGCGACMGKYFCEKCNFFDDDISKNQYHCDGCGICRTGGMDNFFHCEK 355
Score = 118 bits (252), Expect = 3e-026
Identities = 57/114 (50%), Positives = 61/114 (53%)
Frame = -2 / -2
Query: 571 FEQWKEFSXXXXXXXXXXLQ*YCCLETSSSKSLHKPQKYFPMQTPQLIHTCRTSCSVPHN 392
F QWK+ S Q*Y E SSSK LH QKYFPM PQ TSCS+
Sbjct: 354 FSQWKKLSMPPVLQMPHPSQ*YWFFEISSSKKLHFSQKYFPMHAPQPEQFFCTSCSLLQR 175
Query: 391 EHTTCCTSWRGSSCLFILSILMEFLVSLWQCRQSKISLQQGALMRHLLL*CGHP 230
E T SWRG SC S EFL LWQCRQ K S QQGA + HLL+*C P
Sbjct: 174 EQMTLLISWRGMSCRSRTSTSSEFLAWLWQCRQPKTSPQQGARILHLLV*CSQP 13
Score = 23.5 bits (45), Expect(2) = 3e-052
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +2 / +2
Query: 569 KSGCCYSIALK 601
K GCCYS LK
Sbjct: 353 KCGCCYSNVLK 385
>gb|CA002379.1|CA002379 HS07F02r HS Hordeum vulgare subsp. vulgare cDNA clone HS07F02
5-PRIME, mRNA sequence
Length = 503
Score = 201 bits (434), Expect(2) = 3e-052
Identities = 66/115 (57%), Positives = 84/115 (73%)
Frame = +3 / +2
Query: 228 YGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDKMKRHELPRHEVQQVVCSLCGTE 407
+GC HY RRCRIRAPCC E+F CRHCHN+ KNS+++D + RH++PRHE+ +V+CSLC E
Sbjct: 11 HGCEHYTRRCRIRAPCCGEVFGCRHCHNQAKNSLEVDVLDRHDIPRHEISKVICSLCNKE 190
Query: 408 QEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHCNXXXXXXXXXXENSFHCSK 572
Q+V++ C CG CMGKYFC C FDDD+SK QYHC+ +N FHC K
Sbjct: 191 QDVQKNCSGCGACMGKYFCEKCNFFDDDISKNQYHCDGCGICRTGGMDNFFHCEK 355
Score = 118 bits (252), Expect = 3e-026
Identities = 57/114 (50%), Positives = 61/114 (53%)
Frame = -2 / -3
Query: 571 FEQWKEFSXXXXXXXXXXLQ*YCCLETSSSKSLHKPQKYFPMQTPQLIHTCRTSCSVPHN 392
F QWK+ S Q*Y E SSSK LH QKYFPM PQ TSCS+
Sbjct: 354 FSQWKKLSMPPVLQMPHPSQ*YWFFEISSSKKLHFSQKYFPMHAPQPEQFFCTSCSLLQR 175
Query: 391 EHTTCCTSWRGSSCLFILSILMEFLVSLWQCRQSKISLQQGALMRHLLL*CGHP 230
E T SWRG SC S EFL LWQCRQ K S QQGA + HLL+*C P
Sbjct: 174 EQMTLLISWRGMSCRSRTSTSSEFLAWLWQCRQPKTSPQQGARILHLLV*CSQP 13
Score = 23.5 bits (45), Expect(2) = 3e-052
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +2 / +2
Query: 569 KSGCCYSIALK 601
K GCCYS LK
Sbjct: 353 KCGCCYSNVLK 385
>gb|BF619842.2|BF619842 HVSMEc0009G18f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0009G18f, mRNA sequence
Length = 590
Score = 200 bits (431), Expect(2) = 7e-052
Identities = 66/123 (53%), Positives = 86/123 (69%)
Frame = +3 / +1
Query: 204 KFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDKMKRHELPRHEVQQV 383
+ + G +GC HY RRCRIRAPCC E+F CRHCHN+ KNS+++D + RH++PRHE+ +V
Sbjct: 163 QMDLGAEQHGCEHYTRRCRIRAPCCGEVFGCRHCHNQAKNSLEVDVLDRHDIPRHEISKV 342
Query: 384 VCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHCNXXXXXXXXXXENSFH 563
+CSLC EQ+V++ C CG CM KYFC C FDDD+SK QYHC+ +N FH
Sbjct: 343 ICSLCNKEQDVQKNCSGCGACMXKYFCEKCNFFDDDISKNQYHCDGCGICRTGGMDNFFH 522
Query: 564 CSK 572
C K
Sbjct: 523 CEK 531
Score = 118 bits (253), Expect = 2e-026
Identities = 59/121 (48%), Positives = 63/121 (52%)
Frame = -2 / -1
Query: 571 FEQWKEFSXXXXXXXXXXLQ*YCCLETSSSKSLHKPQKYFPMQTPQLIHTCRTSCSVPHN 392
F QWK+ S Q*Y E SSSK LH QKYF M PQ TSCS+
Sbjct: 530 FSQWKKLSMPPVLQMPHPSQ*YWFFEISSSKKLHFSQKYFXMHAPQPEQFFCTSCSLLQR 351
Query: 391 EHTTCCTSWRGSSCLFILSILMEFLVSLWQCRQSKISLQQGALMRHLLL*CGHP*CIIPF 212
E T SWRG SC S EFL LWQCRQ K S QQGA + HLL+*C P C P
Sbjct: 350 EQMTLLISWRGMSCRSRTSTSSEFLAWLWQCRQPKTSPQQGARILHLLV*CSQPCCSAPK 171
Query: 211 S 209
S
Sbjct: 170 S 168
Score = 23.5 bits (45), Expect(2) = 7e-052
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +2 / +1
Query: 569 KSGCCYSIALK 601
K GCCYS LK
Sbjct: 529 KCGCCYSNVLK 561
>gb|CA006612.1|CA006612 HU05D02r HU Hordeum vulgare subsp. vulgare cDNA clone HU05D02
5-PRIME, mRNA sequence
Length = 521
Score = 201 bits (433), Expect = 3e-051
Identities = 66/121 (54%), Positives = 86/121 (71%)
Frame = +3 / +2
Query: 204 KFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDKMKRHELPRHEVQQV 383
+ + G +GC HY RRCRIRAPCC E+F CRHCHN+ KNS+++D + RH++PRHE+ +V
Sbjct: 158 QMDLGAEQHGCEHYTRRCRIRAPCCGEVFGCRHCHNQAKNSLEVDVLDRHDIPRHEISKV 337
Query: 384 VCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHCNXXXXXXXXXXENSFH 563
+CSLC EQ+V++ C CG CMGKYFC C FDDD+SK QYHC+ +N FH
Sbjct: 338 ICSLCNKEQDVQKNCSGCGACMGKYFCEKCNFFDDDISKNQYHCDGCGICRTGGMDNFFH 517
Query: 564 C 566
C
Sbjct: 518 C 520
Score = 120 bits (256), Expect = 8e-027
Identities = 59/119 (49%), Positives = 63/119 (52%)
Frame = -2 / -3
Query: 565 QWKEFSXXXXXXXXXXLQ*YCCLETSSSKSLHKPQKYFPMQTPQLIHTCRTSCSVPHNEH 386
QWK+ S Q*Y E SSSK LH QKYFPM PQ TSCS+ E
Sbjct: 519 QWKKLSMPPVLQMPHPSQ*YWFFEISSSKKLHFSQKYFPMHAPQPEQFFCTSCSLLQREQ 340
Query: 385 TTCCTSWRGSSCLFILSILMEFLVSLWQCRQSKISLQQGALMRHLLL*CGHP*CIIPFS 209
T SWRG SC S EFL LWQCRQ K S QQGA + HLL+*C P C P S
Sbjct: 339 MTLLISWRGMSCRSRTSTSSEFLAWLWQCRQPKTSPQQGARILHLLV*CSQPCCSAPKS 163
>gb|BG342949.2|BG342949 HVSMEg0001H04f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0001H04f, mRNA sequence
Length = 844
Score = 193 bits (415), Expect = 1e-048
Identities = 62/105 (59%), Positives = 81/105 (77%)
Frame = +3 / +3
Query: 204 KFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDKMKRHELPRHEVQQV 383
+ + G +GC HY RRCRIRAPCC E+F CRHCHN+ KNS+++D + RH++PRHE+ +V
Sbjct: 159 QMDLGAEQHGCEHYTRRCRIRAPCCGEVFGCRHCHNQAKNSLEVDVLDRHDIPRHEISKV 338
Query: 384 VCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHCN 518
+CSLC EQ+V++ C CG CMGKYFC C FDDD+SK QYHC+
Sbjct: 339 ICSLCNKEQDVQKNCSGCGACMGKYFCEKCNFFDDDISKNQYHCD 473
Score = 114 bits (244), Expect = 4e-025
Identities = 55/102 (53%), Positives = 58/102 (56%)
Frame = -2 / -1
Query: 514 Q*YCCLETSSSKSLHKPQKYFPMQTPQLIHTCRTSCSVPHNEHTTCCTSWRGSSCLFILS 335
Q*Y E SSSK LH QKYFPM PQ TSCS+ E T SWRG SC S
Sbjct: 469 Q*YWFFEISSSKKLHFSQKYFPMHAPQPEQFFCTSCSLLQREQMTLLISWRGMSCRSRTS 290
Query: 334 ILMEFLVSLWQCRQSKISLQQGALMRHLLL*CGHP*CIIPFS 209
EFL LWQCRQ K S QQGA + HLL+*C P C P S
Sbjct: 289 TSSEFLAWLWQCRQPKTSPQQGARILHLLV*CSQPCCSAPKS 164
>gb|AV923846.1|AV923846 AV923846 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd1m15 5', mRNA sequence
Length = 519
Score = 193 bits (415), Expect = 1e-048
Identities = 62/105 (59%), Positives = 81/105 (77%)
Frame = +3 / +1
Query: 204 KFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDKMKRHELPRHEVQQV 383
+ + G +GC HY RRCRIRAPCC E+F CRHCHN+ KNS+++D + RH++PRHE+ +V
Sbjct: 178 QMDLGAEQHGCEHYTRRCRIRAPCCGEVFGCRHCHNQAKNSLEVDVLDRHDIPRHEISKV 357
Query: 384 VCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHCN 518
+CSLC EQ+V++ C CG CMGKYFC C FDDD+SK QYHC+
Sbjct: 358 ICSLCNKEQDVQKNCSGCGACMGKYFCEKCNFFDDDISKNQYHCD 492
Score = 114 bits (244), Expect = 4e-025
Identities = 55/102 (53%), Positives = 58/102 (56%)
Frame = -2 / -2
Query: 514 Q*YCCLETSSSKSLHKPQKYFPMQTPQLIHTCRTSCSVPHNEHTTCCTSWRGSSCLFILS 335
Q*Y E SSSK LH QKYFPM PQ TSCS+ E T SWRG SC S
Sbjct: 488 Q*YWFFEISSSKKLHFSQKYFPMHAPQPEQFFCTSCSLLQREQMTLLISWRGMSCRSRTS 309
Query: 334 ILMEFLVSLWQCRQSKISLQQGALMRHLLL*CGHP*CIIPFS 209
EFL LWQCRQ K S QQGA + HLL+*C P C P S
Sbjct: 308 TSSEFLAWLWQCRQPKTSPQQGARILHLLV*CSQPCCSAPKS 183
>gb|DW474945.1|DW474945 22-n221 Subtracted libraries from epidermis of 7 day old barley
plants inoculated with R. secalis or the avirulence
protein NIP1 Hordeum vulgare subsp. vulgare cDNA clone
22-n221 similar to Best hit to zinc finger protein
ZFP-like in rice (BAD87761), mRNA sequence
Length = 689
Score = 188 bits (406), Expect = 2e-047
Identities = 66/84 (78%), Positives = 78/84 (92%)
Frame = +3 / +1
Query: 162 NTDKINGSNPDDYEKFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDK 341
+T ++NGSN D+YE+FEKG+M YGC HYRRRCRIRAPCCN+IFDCRHCHNE+KNSI+ID
Sbjct: 436 DTARVNGSNSDEYERFEKGLMEYGCAHYRRRCRIRAPCCNDIFDCRHCHNESKNSIRIDT 615
Query: 342 MKRHELPRHEVQQVVCSLCGTEQE 413
+RHELPRHE+QQV+CSLCGTEQE
Sbjct: 616 PRRHELPRHELQQVICSLCGTEQE 687
Score = 149 bits (319), Expect = 2e-035
Identities = 62/84 (73%), Positives = 67/84 (79%)
Frame = -2 / -1
Query: 415 TSCSVPHNEHTTCCTSWRGSSCLFILSILMEFLVSLWQCRQSKISLQQGALMRHLLL*CG 236
TSCSVPHNEH TCC+SWRGSSC +SIL+EF SLWQCRQSK+SLQQGA MRHLL *C
Sbjct: 689 TSCSVPHNEHMTCCSSWRGSSCRLGVSILIEFFDSLWQCRQSKMSLQQGARMRHLLR*CA 510
Query: 235 HP*CIIPFSNFS*SSGFEPLILSV 164
HP I PFSN S SS EPL L+V
Sbjct: 509 HPYSINPFSNLSYSSELEPLTLAV 438
Score = 129 bits (277), Expect = 1e-029
Identities = 56/83 (67%), Positives = 61/83 (73%)
Frame = -3 / -2
Query: 414 PPVQCHTMSIQPAALHGVEVHASSFYQF*WNS*FHCGSVGNQKFHCSKELLCGISFYNVD 235
PPVQCHTMSI PAA+HGVEVH + YQF* NS HCGS GNQK HCSK L+CGI F NV
Sbjct: 688 PPVQCHTMSI*PAAVHGVEVHVA*EYQF*SNSLIHCGSAGNQKCHCSKVLVCGIFFGNVH 509
Query: 234 THSALSLSQISHSHQGLNH*SCL 166
H+ L SQI H+HQ NH* L
Sbjct: 508 IHTPLIPSQIFHTHQS*NH*PWL 440
Score = 116 bits (249), Expect = 8e-026
Identities = 57/85 (67%), Positives = 63/85 (74%)
Frame = -1 / -3
Query: 413 LLFSATQ*AYNLLHFMAWKFMPLHFINFNGILSFIVAVSAIKNFIAARSSYAASPSIMWT 234
LLFSATQ*AY+LL FMAWKFM IN N IL FIVAV AIKN IAAR SYAAS S+M T
Sbjct: 687 LLFSATQ*AYDLLQFMAWKFMSPRSINSNRIL*FIVAVPAIKNVIAARCSYAASSSVMCT 508
Query: 233 PIVHYPFLKFLIVIRV*TIDLVCIV 159
I+H LK I+IRV TID C++
Sbjct: 507 SILH*SLLKSFILIRVRTIDPGCVI 433
Score = 116 bits (247), Expect = 1e-025
Identities = 56/83 (67%), Positives = 62/83 (74%)
Frame = +1 / +2
Query: 166 QTRSMVQTLMTMRNLRKG*CTMGVHIIEGDAA*ELLAAMKFLIADTATMKLRIPLKLIK* 345
Q SMV TLM+M++LR+ * +M VHI E DAA E LAAM FLIA TATM RI L+LI
Sbjct: 440 QPGSMVLTLMSMKDLRRD*WSMDVHITEEDAAYEHLAAMTFLIAGTATMNQRIRLELILL 619
Query: 346 RGMNFHAMKCSRLYAHCVALNRR 414
MNFHAM CSR YAHCVALNRR
Sbjct: 620 GDMNFHAMNCSRSYAHCVALNRR 688
Score = 105 bits (225), Expect = 2e-022
Identities = 55/84 (65%), Positives = 65/84 (77%)
Frame = +2 / +3
Query: 164 YRQDQWFKP**L*EI*ERDNALWVSTL*KEMPHKSSLLQ*NF*LPTLPQ*N*EFH*N**N 343
+ Q QWF **+*+I*E N +W+ TL K+MPH S+LLQ*+F*LP LPQ* EF *N* +
Sbjct: 438 HSQGQWF*L**V*KI*EGINGVWMCTLPKKMPHTSTLLQ*HF*LPALPQ*IKEFD*N*YS 617
Query: 344 EEA*TSTP*SAAGCMLIVWH*TGG 415
*TSTP*+AAG MLIVWH*TGG
Sbjct: 618 *AT*TSTP*TAAGHMLIVWH*TGG 689
>gb|AV909143.1|AV909143 AV909143 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak11m03 5', mRNA sequence
Length = 622
Score = 186 bits (401), Expect = 8e-047
Identities = 65/83 (78%), Positives = 77/83 (92%)
Frame = +3 / +2
Query: 162 NTDKINGSNPDDYEKFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDK 341
+T ++NGSN D+YE+FEKG+M YGC HYRRRCRIRAPCCN+IFDCRHCHNE+KNSI+ID
Sbjct: 374 DTARVNGSNSDEYERFEKGLMEYGCAHYRRRCRIRAPCCNDIFDCRHCHNESKNSIRIDT 553
Query: 342 MKRHELPRHEVQQVVCSLCGTEQ 410
+RHELPRHE+QQV+CSLCGTEQ
Sbjct: 554 PRRHELPRHELQQVICSLCGTEQ 622
Score = 144 bits (310), Expect = 3e-034
Identities = 60/82 (73%), Positives = 65/82 (79%)
Frame = -2 / -2
Query: 409 CSVPHNEHTTCCTSWRGSSCLFILSILMEFLVSLWQCRQSKISLQQGALMRHLLL*CGHP 230
CSVPHNEH TCC+SWRGSSC +SIL+EF SLWQCRQSK+SLQQGA MRHLL *C HP
Sbjct: 621 CSVPHNEHMTCCSSWRGSSCRLGVSILIEFFDSLWQCRQSKMSLQQGARMRHLLR*CAHP 442
Query: 229 *CIIPFSNFS*SSGFEPLILSV 164
I PFSN S SS EPL L+V
Sbjct: 441 YSINPFSNLSYSSELEPLTLAV 376
Score = 123 bits (263), Expect = 9e-028
Identities = 54/81 (66%), Positives = 59/81 (72%)
Frame = -3 / -3
Query: 408 VQCHTMSIQPAALHGVEVHASSFYQF*WNS*FHCGSVGNQKFHCSKELLCGISFYNVDTH 229
VQCHTMSI PAA+HGVEVH + YQF* NS HCGS GNQK HCSK L+CGI F NV H
Sbjct: 620 VQCHTMSI*PAAVHGVEVHVA*EYQF*SNSLIHCGSAGNQKCHCSKVLVCGIFFGNVHIH 441
Query: 228 SALSLSQISHSHQGLNH*SCL 166
+ L SQI H+HQ NH* L
Sbjct: 440 TPLIPSQIFHTHQS*NH*PWL 378
Score = 115 bits (245), Expect = 3e-025
Identities = 56/84 (66%), Positives = 62/84 (73%)
Frame = -1 / -1
Query: 410 LFSATQ*AYNLLHFMAWKFMPLHFINFNGILSFIVAVSAIKNFIAARSSYAASPSIMWTP 231
LFSATQ*AY+LL FMAWKFM IN N IL FIVAV AIKN IAAR SYAAS S+M T
Sbjct: 622 LFSATQ*AYDLLQFMAWKFMSPRSINSNRIL*FIVAVPAIKNVIAARCSYAASSSVMCTS 443
Query: 230 IVHYPFLKFLIVIRV*TIDLVCIV 159
I+H LK I+IRV TID C++
Sbjct: 442 ILH*SLLKSFILIRVRTIDPGCVI 371
Score = 111 bits (237), Expect = 3e-024
Identities = 54/81 (66%), Positives = 60/81 (74%)
Frame = +1 / +3
Query: 166 QTRSMVQTLMTMRNLRKG*CTMGVHIIEGDAA*ELLAAMKFLIADTATMKLRIPLKLIK* 345
Q SMV TLM+M++LR+ * +M VHI E DAA E LAAM FLIA TATM RI L+LI
Sbjct: 378 QPGSMVLTLMSMKDLRRD*WSMDVHITEEDAAYEHLAAMTFLIAGTATMNQRIRLELILL 557
Query: 346 RGMNFHAMKCSRLYAHCVALN 408
MNFHAM CSR YAHCVALN
Sbjct: 558 GDMNFHAMNCSRSYAHCVALN 620
Score = 100 bits (213), Expect = 7e-021
Identities = 53/82 (64%), Positives = 63/82 (76%)
Frame = +2 / +1
Query: 164 YRQDQWFKP**L*EI*ERDNALWVSTL*KEMPHKSSLLQ*NF*LPTLPQ*N*EFH*N**N 343
+ Q QWF **+*+I*E N +W+ TL K+MPH S+LLQ*+F*LP LPQ* EF *N* +
Sbjct: 376 HSQGQWF*L**V*KI*EGINGVWMCTLPKKMPHTSTLLQ*HF*LPALPQ*IKEFD*N*YS 555
Query: 344 EEA*TSTP*SAAGCMLIVWH*T 409
*TSTP*+AAG MLIVWH*T
Sbjct: 556 *AT*TSTP*TAAGHMLIVWH*T 621
>gb|CA008597.1|CA008597 HU11H12r HU Hordeum vulgare subsp. vulgare cDNA clone HU11H12
5-PRIME, mRNA sequence
Length = 614
Score = 119 bits (255), Expect(2) = 2e-044
Identities = 44/74 (59%), Positives = 48/74 (64%)
Frame = +3 / +3
Query: 351 HELPRHEVQQVVCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHCNXXXX 530
HEL RH VQ V+C +C TEQ V QVC NCGVCMG YFC CK FDDDV K+QYHC
Sbjct: 270 HELDRHAVQSVICLVCDTEQPVAQVCSNCGVCMGDYFCRACKFFDDDVDKEQYHCKDCGI 449
Query: 531 XXXXXXENSFHCSK 572
+N FHC K
Sbjct: 450 CRVGGKDNFFHCHK 491
Score = 91.3 bits (193), Expect(2) = 6e-026
Identities = 39/72 (54%), Positives = 43/72 (59%)
Frame = -2 / -2
Query: 565 QWKEFSXXXXXXXXXXLQ*YCCLETSSSKSLHKPQKYFPMQTPQLIHTCRTSCSVPHNEH 386
QWK+ S LQ YC L TSSSK+LH QK PM TPQL+HTC T CSV H
Sbjct: 484 QWKKLSLPPTLQMPQSLQWYCSLSTSSSKNLHARQK*SPMHTPQLLHTCATGCSVSQTRH 305
Query: 385 TTCCTSWRGSSC 350
T T+WR SSC
Sbjct: 304 MTDWTAWRSSSC 269
Score = 79.0 bits (166), Expect(2) = 2e-044
Identities = 24/32 (75%), Positives = 29/32 (90%)
Frame = +3 / +3
Query: 222 MHYGCPHYRRRCRIRAPCCNEIFDCRHCHNET 317
M +GC HYRRRCRIRAPCCN++F CRHCHN++
Sbjct: 162 MGFGCKHYRRRCRIRAPCCNDVFHCRHCHNDS 257
Score = 45.5 bits (93), Expect(2) = 6e-026
Identities = 20/31 (64%), Positives = 22/31 (70%)
Frame = -2 / -2
Query: 322 FLVSLWQCRQSKISLQQGALMRHLLL*CGHP 230
F+ SLWQ RQ K SLQ GA + H LL*C HP
Sbjct: 262 FVESLWQWRQWKTSLQHGARILHRLL*CLHP 170
>gb|BG369930.2|BG369930 HVSMEi0026J11f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0026J11f, mRNA sequence
Length = 682
Score = 171 bits (369), Expect(2) = 2e-043
Identities = 56/102 (54%), Positives = 71/102 (69%)
Frame = +3 / +3
Query: 267 APCCNEIFDCRHCHNETKNSIKIDKMKRHELPRHEVQQVVCSLCGTEQEVRQVCINCGVC 446
APCC E+F CRHCHN+ KNS+ +D + RH++PRHE+ +V+CSLC EQ+V + C CG C
Sbjct: 3 APCCGEVFSCRHCHNQAKNSLDVDVLDRHDIPRHEISKVICSLCNKEQDVHKNCSGCGAC 182
Query: 447 MGKYFCGLCKLFDDDVSKQQYHCNXXXXXXXXXXENSFHCSK 572
MGKYFC C FDDD+SK QYHC+ +N FHC K
Sbjct: 183 MGKYFCEKCNFFDDDISKNQYHCDGCGICRTGGMDNFFHCEK 308
Score = 104 bits (221), Expect = 6e-022
Identities = 51/102 (50%), Positives = 53/102 (51%)
Frame = -2 / -1
Query: 571 FEQWKEFSXXXXXXXXXXLQ*YCCLETSSSKSLHKPQKYFPMQTPQLIHTCRTSCSVPHN 392
F QWK+ S Q*Y E SSSK LH QKYFPM PQ TSCS+
Sbjct: 307 FSQWKKLSMPPVLQMPHPSQ*YWFFEISSSKKLHFSQKYFPMHAPQPEQFLCTSCSLLQR 128
Query: 391 EHTTCCTSWRGSSCLFILSILMEFLVSLWQCRQSKISLQQGA 266
E T SWRG SC S EFL LWQCRQ K S QQGA
Sbjct: 127 EQMTLLISWRGMSCRSRTSTSSEFLAWLWQCRQLKTSPQQGA 2
Score = 23.5 bits (45), Expect(2) = 2e-043
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +2 / +3
Query: 569 KSGCCYSIALK 601
K GCCYS LK
Sbjct: 306 KCGCCYSNVLK 338
>gb|BF616887.1|BF616887 HVSMEc0013G20f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0013G20f, mRNA sequence
Length = 584
Score = 117 bits (251), Expect(2) = 2e-043
Identities = 43/72 (59%), Positives = 47/72 (65%)
Frame = +3 / +1
Query: 351 HELPRHEVQQVVCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHCNXXXX 530
HEL RH VQ V+C +C TEQ V QVC NCGVCMG YFC CK FDDDV K+QYHC
Sbjct: 364 HELDRHAVQSVICLVCDTEQPVAQVCSNCGVCMGDYFCRACKFFDDDVDKEQYHCKDCGI 543
Query: 531 XXXXXXENSFHC 566
+N FHC
Sbjct: 544 CRVGGKDNFFHC 579
Score = 91.3 bits (193), Expect(2) = 2e-025
Identities = 39/72 (54%), Positives = 43/72 (59%)
Frame = -2 / -1
Query: 565 QWKEFSXXXXXXXXXXLQ*YCCLETSSSKSLHKPQKYFPMQTPQLIHTCRTSCSVPHNEH 386
QWK+ S LQ YC L TSSSK+LH QK PM TPQL+HTC T CSV H
Sbjct: 578 QWKKLSLPPTLQMPQSLQWYCSLSTSSSKNLHARQK*SPMHTPQLLHTCATGCSVSQTRH 399
Query: 385 TTCCTSWRGSSC 350
T T+WR SSC
Sbjct: 398 MTDWTAWRSSSC 363
Score = 79.0 bits (166), Expect(2) = 2e-043
Identities = 24/32 (75%), Positives = 29/32 (90%)
Frame = +3 / +1
Query: 222 MHYGCPHYRRRCRIRAPCCNEIFDCRHCHNET 317
M +GC HYRRRCRIRAPCCN++F CRHCHN++
Sbjct: 139 MGFGCKHYRRRCRIRAPCCNDVFHCRHCHNDS 234
Score = 44.1 bits (90), Expect(2) = 2e-025
Identities = 20/32 (62%), Positives = 22/32 (68%)
Frame = -2 / -1
Query: 325 EFLVSLWQCRQSKISLQQGALMRHLLL*CGHP 230
E + SLWQ RQ K SLQ GA + H LL*C HP
Sbjct: 242 ETVESLWQWRQWKTSLQHGARILHRLL*CLHP 147
>gb|AV923246.1|AV923246 AV923246 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd12g02 5', mRNA sequence
Length = 683
Score = 144 bits (308), Expect(2) = 9e-042
Identities = 50/59 (84%), Positives = 56/59 (94%)
Frame = +3 / +3
Query: 231 GCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDKMKRHELPRHEVQQVVCSLCGTE 407
GC HYRRRCRIRAPCCN+IFDCRHCHNE+KNSI+ID +RHELPRHE+QQV+CSLCGTE
Sbjct: 507 GCAHYRRRCRIRAPCCNDIFDCRHCHNESKNSIRIDTPRRHELPRHELQQVICSLCGTE 683
Score = 118 bits (252), Expect(2) = 2e-029
Identities = 46/59 (77%), Positives = 50/59 (84%)
Frame = -2 / -2
Query: 406 SVPHNEHTTCCTSWRGSSCLFILSILMEFLVSLWQCRQSKISLQQGALMRHLLL*CGHP 230
SVPHNEH TCC+SWRGSSC +SIL+EF SLWQCRQSK+SLQQGA MRHLL *C HP
Sbjct: 682 SVPHNEHMTCCSSWRGSSCRLGVSILIEFFDSLWQCRQSKMSLQQGARMRHLLR*CAHP 506
Score = 98.7 bits (209), Expect(2) = 4e-023
Identities = 41/56 (73%), Positives = 44/56 (78%)
Frame = -3 / -3
Query: 405 QCHTMSIQPAALHGVEVHASSFYQF*WNS*FHCGSVGNQKFHCSKELLCGISFYNV 238
QCHTMSI PAA+HGVEVH + YQF* NS HCGS GNQK HCSK L+CGI F NV
Sbjct: 681 QCHTMSI*PAAVHGVEVHVA*EYQF*SNSLIHCGSAGNQKCHCSKVLVCGIFFGNV 514
Score = 46.0 bits (94), Expect(2) = 9e-042
Identities = 15/24 (62%), Positives = 21/24 (87%)
Frame = +3 / +2
Query: 162 NTDKINGSNPDDYEKFEKGIMHYG 233
+T ++NGSN D+YE+FEKG+M YG
Sbjct: 437 DTARVNGSNSDEYERFEKGLMEYG 508
Score = 30.4 bits (60), Expect(2) = 2e-029
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -1 / -2
Query: 233 PIVHYPFLKFLIVIRV*TIDLVCIV 159
PI+H LK I+IRV TID C++
Sbjct: 508 PILH*SLLKSFILIRVRTIDPGCVI 434
Score = 28.6 bits (56), Expect(2) = 4e-023
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = -2 / -3
Query: 232 P*CIIPFSNFS*SSGFEPLILSV 164
P I PFSN S SS EPL L+V
Sbjct: 507 PYSINPFSNLSYSSELEPLTLAV 439
>gb|CA012048.1|CA012048 HT04E17r HT Hordeum vulgare subsp. vulgare cDNA clone HT04E17
5-PRIME, mRNA sequence
Length = 554
Score = 169 bits (363), Expect = 1e-041
Identities = 58/76 (76%), Positives = 70/76 (92%)
Frame = +3 / +1
Query: 162 NTDKINGSNPDDYEKFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDK 341
+T ++NGSN D+YE+FEKG+M YGC HYRRRCRIRAPCCN+IFDCRHCHNE+KNSI+ID
Sbjct: 325 DTARVNGSNSDEYERFEKGLMEYGCAHYRRRCRIRAPCCNDIFDCRHCHNESKNSIRIDT 504
Query: 342 MKRHELPRHEVQQVVC 389
+RHELPRHE+QQV+C
Sbjct: 505 PRRHELPRHELQQVIC 552
Score = 127 bits (272), Expect = 5e-029
Identities = 54/76 (71%), Positives = 59/76 (77%)
Frame = -2 / -1
Query: 391 EHTTCCTSWRGSSCLFILSILMEFLVSLWQCRQSKISLQQGALMRHLLL*CGHP*CIIPF 212
EH TCC+SWRGSSC +SIL+EF SLWQCRQSK+SLQQGA MRHLL *C HP I PF
Sbjct: 554 EHMTCCSSWRGSSCRLGVSILIEFFDSLWQCRQSKMSLQQGARMRHLLR*CAHPYSINPF 375
Query: 211 SNFS*SSGFEPLILSV 164
SN S SS EPL L+V
Sbjct: 374 SNLSYSSELEPLTLAV 327
Score = 106 bits (227), Expect = 8e-023
Identities = 48/75 (64%), Positives = 53/75 (70%)
Frame = -3 / -2
Query: 390 SIQPAALHGVEVHASSFYQF*WNS*FHCGSVGNQKFHCSKELLCGISFYNVDTHSALSLS 211
SI PAA+HGVEVH + YQF* NS HCGS GNQK HCSK L+CGI F NV H+ L S
Sbjct: 553 SI*PAAVHGVEVHVA*EYQF*SNSLIHCGSAGNQKCHCSKVLVCGIFFGNVHIHTPLIPS 374
Query: 210 QISHSHQGLNH*SCL 166
QI H+HQ NH* L
Sbjct: 373 QIFHTHQS*NH*PWL 329
Score = 101 bits (216), Expect = 3e-021
Identities = 49/77 (63%), Positives = 55/77 (71%)
Frame = -1 / -3
Query: 389 AYNLLHFMAWKFMPLHFINFNGILSFIVAVSAIKNFIAARSSYAASPSIMWTPIVHYPFL 210
AY+LL FMAWKFM IN N IL FIVAV AIKN IAAR SYAAS S+M T I+H L
Sbjct: 552 AYDLLQFMAWKFMSPRSINSNRIL*FIVAVPAIKNVIAARCSYAASSSVMCTSILH*SLL 373
Query: 209 KFLIVIRV*TIDLVCIV 159
K I+IRV TID C++
Sbjct: 372 KSFILIRVRTIDPGCVI 322
>gb|BJ464822.1|BJ464822 BJ464822 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags36c23 5', mRNA sequence
Length = 584
Score = 110 bits (235), Expect(2) = 4e-040
Identities = 40/75 (53%), Positives = 50/75 (66%)
Frame = +3 / +1
Query: 348 RHELPRHEVQQVVCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHCNXXX 527
RH + R +V++VVC LC TEQ V QVC+ CGV MG+YFC +CK +DDD K QYHC+
Sbjct: 295 RHNICRQDVEKVVCVLCDTEQPVSQVCVRCGVNMGEYFCDVCKFYDDDTEKGQYHCHDCG 474
Query: 528 XXXXXXXENSFHCSK 572
EN FHC+K
Sbjct: 475 ICRVGGKENYFHCAK 519
Score = 81.7 bits (172), Expect(2) = 4e-024
Identities = 36/74 (48%), Positives = 39/74 (52%)
Frame = -2 / -1
Query: 571 FEQWKEFSXXXXXXXXXXLQ*YCCLETSSSKSLHKPQKYFPMQTPQLIHTCRTSCSVPHN 392
F QWK FS Q YC SSS +LH QKY P+ TP L HTC T CSV +
Sbjct: 518 FAQWK*FSLPPTLHMPQSWQWYCPFSVSSS*NLHTSQKYSPILTPHLTHTCDTGCSVSQS 339
Query: 391 EHTTCCTSWRGSSC 350
HTT TSWR C
Sbjct: 338 THTTFSTSWRHILC 297
Score = 73.9 bits (155), Expect(2) = 4e-040
Identities = 23/33 (69%), Positives = 27/33 (81%)
Frame = +3 / +1
Query: 216 GIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNE 314
G M +GC HYRRRC+I APCC E+F CRHCHN+
Sbjct: 178 GKMEHGCEHYRRRCKIVAPCCKEVFPCRHCHND 276
Score = 49.2 bits (101), Expect(2) = 4e-024
Identities = 21/37 (56%), Positives = 24/37 (64%)
Frame = -2 / -1
Query: 319 LVSLWQCRQSKISLQQGALMRHLLL*CGHP*CIIPFS 209
+ SLWQ RQ SLQQGA + HL *C HP I+P S
Sbjct: 281 VASLWQWRQGNTSLQQGATILHLRR*CSHPCSILPTS 171
>gb|BI959212.1|BI959212 HVSMEn0018K16f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0018K16f, mRNA sequence
Length = 679
Score = 107 bits (229), Expect(2) = 3e-039
Identities = 41/81 (50%), Positives = 53/81 (65%)
Frame = +3 / +2
Query: 348 RHELPRHEVQQVVCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHCNXXX 527
RH + R +V++VVC LC TEQ V QVC+ CGV MG+YFC +CK +DDD K QYHC+
Sbjct: 395 RHNICRQDVEKVVCVLCDTEQPVSQVCVRCGVNMGEYFCDVCKFYDDDTEKGQYHCHDCG 574
Query: 528 XXXXXXXENSFHCSKVDVAIQ 590
EN HC+K V ++
Sbjct: 575 ICRVGXKENYXHCAKXWVMLR 637
Score = 80.8 bits (170), Expect(2) = 7e-024
Identities = 37/77 (48%), Positives = 40/77 (51%)
Frame = -2 / -2
Query: 580 TSTFEQWKEFSXXXXXXXXXXLQ*YCCLETSSSKSLHKPQKYFPMQTPQLIHTCRTSCSV 401
T F QW FS Q YC SSS +LH QKY P+ TP L HTC T CSV
Sbjct: 627 TXHFAQWX*FSLXPTLHMPQSWQWYCPFSVSSS*NLHTSQKYSPILTPHLTHTCDTGCSV 448
Query: 400 PHNEHTTCCTSWRGSSC 350
+ HTT TSWR C
Sbjct: 447 SQSTHTTFSTSWRHILC 397
Score = 73.9 bits (155), Expect(2) = 3e-039
Identities = 23/33 (69%), Positives = 27/33 (81%)
Frame = +3 / +2
Query: 216 GIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNE 314
G M +GC HYRRRC+I APCC E+F CRHCHN+
Sbjct: 278 GKMEHGCEHYRRRCKIVAPCCKEVFPCRHCHND 376
Score = 49.2 bits (101), Expect(2) = 7e-024
Identities = 21/37 (56%), Positives = 24/37 (64%)
Frame = -2 / -2
Query: 319 LVSLWQCRQSKISLQQGALMRHLLL*CGHP*CIIPFS 209
+ SLWQ RQ SLQQGA + HL *C HP I+P S
Sbjct: 381 VASLWQWRQGNTSLQQGATILHLRR*CSHPCSILPTS 271
>gb|BE216717.2|BE216717 HV_CEb0011F08f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0011F08f, mRNA sequence
Length = 945
Score = 102 bits (218), Expect(2) = 8e-038
Identities = 37/74 (50%), Positives = 47/74 (63%)
Frame = +3 / +1
Query: 348 RHELPRHEVQQVVCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHCNXXX 527
RH + R +V++VVC LC TEQ V QVC+ CGV MG+YFC +CK +DDD K QYHC+
Sbjct: 256 RHNICRQDVEKVVCVLCDTEQPVSQVCVRCGVNMGEYFCDVCKFYDDDTEKGQYHCHDCG 435
Query: 528 XXXXXXXENSFHCS 569
E HC+
Sbjct: 436 ICRVGGKEKYLHCA 477
Score = 74.4 bits (156), Expect(2) = 5e-022
Identities = 34/72 (47%), Positives = 37/72 (51%)
Frame = -2 / -2
Query: 565 QWKEFSXXXXXXXXXXLQ*YCCLETSSSKSLHKPQKYFPMQTPQLIHTCRTSCSVPHNEH 386
Q K FS Q YC SSS +LH QKY P+ TP L HTC T CSV + H
Sbjct: 473 QCKYFSLPPTLHMPQSWQWYCPFSVSSS*NLHTSQKYSPILTPHLTHTCDTGCSVSQSTH 294
Query: 385 TTCCTSWRGSSC 350
TT TSWR C
Sbjct: 293 TTFSTSWRHILC 258
Score = 73.9 bits (155), Expect(2) = 8e-038
Identities = 23/33 (69%), Positives = 27/33 (81%)
Frame = +3 / +1
Query: 216 GIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNE 314
G M +GC HYRRRC+I APCC E+F CRHCHN+
Sbjct: 139 GKMEHGCEHYRRRCKIVAPCCKEVFPCRHCHND 237
Score = 49.2 bits (101), Expect(2) = 5e-022
Identities = 21/37 (56%), Positives = 24/37 (64%)
Frame = -2 / -2
Query: 319 LVSLWQCRQSKISLQQGALMRHLLL*CGHP*CIIPFS 209
+ SLWQ RQ SLQQGA + HL *C HP I+P S
Sbjct: 242 VASLWQWRQGNTSLQQGATILHLRR*CSHPCSILPTS 132
>gb|AL505025.1|AL505025 AL505025 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW07C11V 5', mRNA sequence
Length = 478
Score = 130 bits (279), Expect(2) = 2e-031
Identities = 48/67 (71%), Positives = 54/67 (80%)
Frame = +3 / +3
Query: 372 VQQVVCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHCNXXXXXXXXXXE 551
+ QV+CSLCGTEQEVRQ+CI+CGVCMGKYFC +CKLFDDDVSKQQYHC+ E
Sbjct: 3 MXQVICSLCGTEQEVRQICISCGVCMGKYFCEVCKLFDDDVSKQQYHCHGCGICRIGGRE 182
Query: 552 NSFHCSK 572
N FHCSK
Sbjct: 183 NFFHCSK 203
Score = 105 bits (223), Expect(2) = 1e-022
Identities = 39/46 (84%), Positives = 40/46 (86%)
Frame = -2 / -1
Query: 514 Q*YCCLETSSSKSLHKPQKYFPMQTPQLIHTCRTSCSVPHNEHTTC 377
Q*YCC ETSSSKSLH QKYFPM TPQL+H CRTSCSVPHNEH TC
Sbjct: 145 Q*YCCFETSSSKSLHTSQKYFPMHTPQLMHICRTSCSVPHNEHMTC 8
Score = 104 bits (222), Expect = 4e-022
Identities = 46/67 (68%), Positives = 56/67 (83%)
Frame = -1 / -3
Query: 572 F*TVEGILPASDSTYSTSVAVILLFRDIIVEEFAQTTEVLPHANTAIDTYLSHLLFSATQ 393
F* V+ ILPA++S YST++AVILLF DII++E A TE+LPHA T D YLS+LLFSATQ
Sbjct: 203 F*AVKEILPATNSAYSTTMAVILLF*DIIIKELAHFTEILPHAYTTADAYLSYLLFSATQ 24
Query: 392 *AYNLLH 372
*AY+LLH
Sbjct: 23 *AYDLLH 3
Score = 102 bits (218), Expect = 1e-021
Identities = 43/66 (65%), Positives = 49/66 (74%)
Frame = -3 / -2
Query: 573 LLNSGRNSPCLRFYIFHIRCSDTAV*RHHRRRVCTNHRSTSPCKHRN*YILVAPPVQCHT 394
+L+S RNSPC +F IFH SDTAV RHH +R CT HR+TSPC H +* I V P VQCHT
Sbjct: 204 ILSSERNSPCHQFCIFHNHGSDTAVLRHHHQRACTLHRNTSPCIHHS*CIFVVPLVQCHT 25
Query: 393 MSIQPA 376
MSI PA
Sbjct: 24 MSI*PA 7
Score = 98.7 bits (209), Expect(2) = 7e-022
Identities = 44/65 (67%), Positives = 47/65 (72%)
Frame = +1 / +1
Query: 376 SRLYAHCVALNRRCDKYVSIAVFAWGSTSVVCANSSTMMSLNSSITATDVEYVESEAGRI 555
SR YAHCVALN+R DKY S V+AWGS SV CA+S MMS NSSITA VEY E AGRI
Sbjct: 7 SRSYAHCVALNKRYDKYASAVVYAWGSISVKCASSLMMMSQNSSITAMVVEYAELVAGRI 186
Query: 556 PSTVQ 570
T Q
Sbjct: 187 SFTAQ 201
Score = 24.9 bits (48), Expect(2) = 2e-031
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +2 / +3
Query: 554 FLPLFKSGCCYSIALK 601
F K GCCYS LK
Sbjct: 186 FFHCSKCGCCYSTVLK 233
Score = 24.4 bits (47), Expect(2) = 7e-022
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +1 / +2
Query: 547 GRIPSTVQKWMLLFNCAE 600
G S ++ WMLLF C E
Sbjct: 179 GEFLSLLKMWMLLFYCFE 232
Score = 21.7 bits (41), Expect(2) = 1e-022
Identities = 10/23 (43%), Positives = 11/23 (47%)
Frame = -3 / -2
Query: 555 NSPCLRFYIFHIRCSDTAV*RHH 487
N+P IFH TA RHH
Sbjct: 378 NAPSFLSSIFHELYDHTAEQRHH 310
>gb|CA004832.1|CA004832 HS18N03r HS Hordeum vulgare subsp. vulgare cDNA clone HS18N03
5-PRIME, mRNA sequence
Length = 397
Score = 133 bits (284), Expect = 1e-030
Identities = 42/75 (56%), Positives = 59/75 (78%)
Frame = +3 / +1
Query: 204 KFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDKMKRHELPRHEVQQV 383
+ + G +GC HY RRCRIRAPCC E+F CRHCHN+ KNS+++D + RH++PRHE+ +V
Sbjct: 172 QMDLGAEQHGCEHYTRRCRIRAPCCGEVFGCRHCHNQAKNSLEVDVLDRHDIPRHEISKV 351
Query: 384 VCSLCGTEQEVRQVC 428
+CSLC EQ+V++ C
Sbjct: 352 ICSLCNKEQDVQKNC 396
>gb|BG309299.2|BG309299 HVSMEc0007D18f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0007D18f, mRNA sequence
Length = 906
Score = 126 bits (269), Expect(2) = 7e-030
Identities = 41/73 (56%), Positives = 55/73 (75%)
Frame = +3 / +1
Query: 204 KFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDKMKRHELPRHEVQQV 383
+ + G GC HY RRCRIRAPCC E+F CRHCHN+ KNS+++D + RH++PRHE+ +V
Sbjct: 130 QMDLGAEQRGCEHYTRRCRIRAPCCGEVFGCRHCHNQAKNSLEVDVLDRHDIPRHEISRV 309
Query: 384 VCSLCGTEQEVRQ 422
+CSLC +QE Q
Sbjct: 310 ICSLCNKQQEWAQ 348
Score = 24.0 bits (46), Expect(2) = 7e-030
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +3 / +2
Query: 450 GKYFCGLCKLFDDD 491
GKYFCG F DD
Sbjct: 380 GKYFCGKKATFLDD 421
>gb|BI950307.1|BI950307 HVSMEl0020C23f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0020C23f, mRNA sequence
Length = 466
Score = 104 bits (222), Expect = 4e-022
Identities = 36/50 (72%), Positives = 42/50 (84%)
Frame = +3 / +3
Query: 162 NTDKINGSNPDDYEKFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHN 311
+T +NGSN D+YE+FEKG+M C HYRRRCRIRAPCCN+I DCRHCHN
Sbjct: 315 DTAXVNGSNSDEYERFEKGLME**CAHYRRRCRIRAPCCNDIXDCRHCHN 464
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 270,467,010
Number of Sequences: 312970
Number of extensions: 4476649
Number of successful extensions: 54784
Number of sequences better than 1.0e-020: 43
length of database: 58,378,179
effective HSP length: 51
effective length of database: 42,416,709
effective search space used: 6320089641
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)