TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3191640.2.1
(923 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BM442515.2|BM442515 EBan01_SQ003_G09_R anther, yellow st... 144 8e-065
gb|BQ764168.1|BQ764168 EBan01_SQ005_F02_R anther, yellow st... 123 4e-053
gb|BM442620.2|BM442620 EBan01_SQ003_L02_R anther, yellow st... 194 5e-049
gb|BM442473.2|BM442473 EBan01_SQ003_E14_R anther, yellow st... 118 2e-044
gb|BQ753595.1|BQ753595 EBan01_SQ004_L07_R anther, yellow st... 123 7e-044
gb|BQ753283.1|BQ753283 EBan01_SQ001_C11_R anther, yellow st... 123 4e-032
gb|BQ464404.1|BQ464404 HF02C24r HF Hordeum vulgare subsp. v... 130 1e-029
gb|CB881820.1|CB881820 HM10P12w HM Hordeum vulgare subsp. v... 113 3e-028
gb|BQ470839.1|BQ470839 HX04D02r HX Hordeum vulgare subsp. v... 87 7e-028
gb|CA030305.1|CA030305 HX06K19r HX Hordeum vulgare subsp. v... 75 2e-024
gb|BI957299.1|BI957299 HVSMEn0008L17f Hordeum vulgare rachi... 109 2e-023
>gb|BM442515.2|BM442515 EBan01_SQ003_G09_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ003_G09 5', mRNA sequence
Length = 588
Score = 144 bits (308), Expect(2) = 8e-065
Identities = 53/90 (58%), Positives = 73/90 (81%)
Frame = +1 / +3
Query: 247 ITCGPGQGISVGCLGRYKDEKDVSDVTVRDCVLRNTTNGVRIKSYEDAESVLTASHLTFE 426
+TCGPG GIS+G LGRYKDEKDV+D+ V++CV + +TNG+RIKSYED++S L AS +++E
Sbjct: 6 VTCGPGHGISIGSLGRYKDEKDVTDIHVKNCVFKGSTNGLRIKSYEDSKSPLVASKISYE 185
Query: 427 NIRMEEVANPIIIDQYFCPQKVCPGKRSNS 516
NI+M++ PIIIDQ +CP K+C K +S
Sbjct: 186 NIKMDDSGYPIIIDQKYCPNKLCTAKGDSS 275
Score = 123 bits (264), Expect(2) = 8e-065
Identities = 50/80 (62%), Positives = 65/80 (81%)
Frame = +1 / +3
Query: 505 RSNSSHVSIKDVTFRNISGTSSTPEAVSLLCSETQPCSGVSLIDVNVEYAGKNNKTMAVC 684
+ +SS V++KDVTF+NI+GTSSTPEAVSLLCS+ +PC GV++ DV +EY+GKNNKTMAVC
Sbjct: 261 KGDSSRVTVKDVTFKNITGTSSTPEAVSLLCSDKKPCEGVTMSDVKIEYSGKNNKTMAVC 440
Query: 685 SNAKGTAKGSLQALDCLV*S 744
+N K TA G +A C *+
Sbjct: 441 TNVKVTATGVDKANACAA*A 500
Score = 94.5 bits (200), Expect(2) = 4e-037
Identities = 46/78 (58%), Positives = 53/78 (67%)
Frame = -1 / -3
Query: 746 IDQTRQSRAWRLPLAVPLALLHTAMVLLFLPAYSTLTSMSETPLHGCVSEQSRLTASGVD 567
+ Q + A P+AV L L+ TAMVLLFLP YS LTS TP G +SEQSRLTASGV+
Sbjct: 502 VAQAAHALALSTPVAVTLTLVQTAMVLLFLPEYSILTSDIVTPSQGFLSEQSRLTASGVE 323
Query: 566 DVPEMLRKVTSLMETCEE 513
+VP M KVTSL T EE
Sbjct: 322 EVPVMFLKVTSLTVTLEE 269
Score = 80.8 bits (170), Expect(2) = 4e-037
Identities = 42/82 (51%), Positives = 46/82 (56%)
Frame = -1 / -3
Query: 494 QTFWGQKYWSMMMGLATSSILMFSKVRWDAVSTDSASSYDLMRTPLVVFLSTQXXXXXXX 315
Q+ GQ + SMMMG SSILMFS + DA D SSYDLMR PLV L+TQ
Sbjct: 253 QSLLGQYF*SMMMG*PESSILMFS*LILDATRGDLESSYDLMRRPLVDPLNTQFLTWMSV 74
Query: 314 XXXXXXXRPRQPTLMPCPGPQV 249
PR P LMP PGPQV
Sbjct: 73 TSFSSLYLPRLPILMPWPGPQV 8
Score = 80.3 bits (169), Expect(2) = 8e-024
Identities = 33/61 (54%), Positives = 45/61 (73%)
Frame = -3 / -2
Query: 516 GVASLAGADLLGAEVLVDDDGVGHLLHPDVLEGEMGRREHRLGILVRLDAHAVGGVPKHA 337
G +L GA+ +GA +L+DDDGV ++H DVL ++GR E LG+LVRLDA AVGG +HA
Sbjct: 275 GGVALGGAEFVGAVLLIDDDGVARVVHLDVLVADLGRDEGGLGVLVRLDAEAVGGSLEHA 96
Query: 336 I 334
+
Sbjct: 95 V 93
Score = 50.1 bits (103), Expect(2) = 8e-024
Identities = 32/79 (40%), Positives = 35/79 (44%)
Frame = -3 / -2
Query: 744 RSDEAIQGLEASLGGSLGVAAHSHXXXXXXXXXXXDIDERDAAARLRLGAEQXXXXXXXX 565
RS A GL GG V SH D+ DA ARL +GAEQ
Sbjct: 500 RSGGACVGLVDPRGGDFDVGTDSHGLVVLAGVLDLDVGHCDAFARLFVGAEQADGLRGGG 321
Query: 564 XXXDVAEGDVLDGDMRGVA 508
DV EG+VLDGD GVA
Sbjct: 320 GAGDVFEGNVLDGDPGGVA 264
>gb|BQ764168.1|BQ764168 EBan01_SQ005_F02_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ005_F02 5', mRNA sequence
Length = 693
Score = 123 bits (264), Expect(2) = 4e-053
Identities = 50/80 (62%), Positives = 65/80 (81%)
Frame = +1 / +2
Query: 505 RSNSSHVSIKDVTFRNISGTSSTPEAVSLLCSETQPCSGVSLIDVNVEYAGKNNKTMAVC 684
+ +SS V++KDVTF+NI+GTSSTPEAVSLLCS+ +PC GV++ DV +EY+GKNNKTMAVC
Sbjct: 203 KGDSSRVTVKDVTFKNITGTSSTPEAVSLLCSDKKPCEGVTMSDVKIEYSGKNNKTMAVC 382
Query: 685 SNAKGTAKGSLQALDCLV*S 744
+N K TA G +A C *+
Sbjct: 383 TNVKVTATGVDKANACAA*A 442
Score = 105 bits (223), Expect(2) = 4e-053
Identities = 39/72 (54%), Positives = 57/72 (79%)
Frame = +1 / +2
Query: 301 DEKDVSDVTVRDCVLRNTTNGVRIKSYEDAESVLTASHLTFENIRMEEVANPIIIDQYFC 480
DEKDV+D+ V++CV + +TNG+RIKSYED++S L AS +++ENI+M++ PIIIDQ +C
Sbjct: 2 DEKDVTDIHVKNCVFKGSTNGLRIKSYEDSKSPLVASKISYENIKMDDSGYPIIIDQKYC 181
Query: 481 PQKVCPGKRSNS 516
P K+C K +S
Sbjct: 182 PNKLCTAKGDSS 217
Score = 94.5 bits (200), Expect(2) = 5e-037
Identities = 46/78 (58%), Positives = 53/78 (67%)
Frame = -1 / -1
Query: 746 IDQTRQSRAWRLPLAVPLALLHTAMVLLFLPAYSTLTSMSETPLHGCVSEQSRLTASGVD 567
+ Q + A P+AV L L+ TAMVLLFLP YS LTS TP G +SEQSRLTASGV+
Sbjct: 444 VAQAAHALALSTPVAVTLTLVQTAMVLLFLPEYSILTSDIVTPSQGFLSEQSRLTASGVE 265
Query: 566 DVPEMLRKVTSLMETCEE 513
+VP M KVTSL T EE
Sbjct: 264 EVPVMFLKVTSLTVTLEE 211
Score = 80.3 bits (169), Expect(2) = 5e-037
Identities = 33/61 (54%), Positives = 45/61 (73%)
Frame = -3 / -3
Query: 516 GVASLAGADLLGAEVLVDDDGVGHLLHPDVLEGEMGRREHRLGILVRLDAHAVGGVPKHA 337
G +L GA+ +GA +L+DDDGV ++H DVL ++GR E LG+LVRLDA AVGG +HA
Sbjct: 217 GGVALGGAEFVGAVLLIDDDGVARVVHLDVLVADLGRDEGGLGVLVRLDAEAVGGSLEHA 38
Query: 336 I 334
+
Sbjct: 37 V 35
>gb|BM442620.2|BM442620 EBan01_SQ003_L02_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ003_L02 5', mRNA sequence
Length = 377
Score = 194 bits (419), Expect = 5e-049
Identities = 72/123 (58%), Positives = 99/123 (80%)
Frame = +1 / +2
Query: 136 GVHVGGSSNVRITNSTIGTGDDCVSIGPGSDGVMVNNITCGPGQGISVGCLGRYKDEKDV 315
G+H+G SSNV I ++TI GDDC+SIGPGS V ++ +TCGP GIS+G LGRYKDEKDV
Sbjct: 2 GIHMGDSSNVNIIDTTIAVGDDCISIGPGSKQVNISGVTCGPSHGISIGSLGRYKDEKDV 181
Query: 316 SDVTVRDCVLRNTTNGVRIKSYEDAESVLTASHLTFENIRMEEVANPIIIDQYFCPQKVC 495
+D+ V++CV + +TNG+RIKSYED++S L AS +++ENI+M++ + PIIIDQ +CP K+C
Sbjct: 182 TDIHVKNCVFKGSTNGLRIKSYEDSKSPLVASKISYENIKMDDSSYPIIIDQKYCPHKLC 361
Query: 496 PGK 504
K
Sbjct: 362 TAK 370
Score = 121 bits (259), Expect = 5e-027
Identities = 60/120 (50%), Positives = 68/120 (56%)
Frame = -1 / -3
Query: 494 QTFWGQKYWSMMMGLATSSILMFSKVRWDAVSTDSASSYDLMRTPLVVFLSTQXXXXXXX 315
Q+ WGQ + SMMMG SSILMFS + DA D SSYDLMR PLV L+TQ
Sbjct: 360 QSLWGQYF*SMMMG*LESSILMFS*LILDATRGDLESSYDLMRRPLVDPLNTQFLTWMSV 181
Query: 314 XXXXXXXRPRQPTLMPCPGPQVMLFTMTPSLPGPMETQSSPVPMVELVMRTLEDPPTWTP 135
PR P LMP GPQV +T PGPME QSSP MV +M TL++ P W P
Sbjct: 180 TSFSSLYLPRLPILMPWLGPQVTPLMLTCLEPGPMEMQSSPTAMVVSMMLTLDESPMWMP 1
>gb|BM442473.2|BM442473 EBan01_SQ003_E14_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ003_E14 5', mRNA sequence
Length = 454
Score = 118 bits (253), Expect(2) = 2e-044
Identities = 49/80 (61%), Positives = 64/80 (80%)
Frame = +1 / +3
Query: 505 RSNSSHVSIKDVTFRNISGTSSTPEAVSLLCSETQPCSGVSLIDVNVEYAGKNNKTMAVC 684
+ +SS V++KDVTF+NI+GTSSTPEAVSLLCS+ +P GV++ DV +EY+GKNNKTMAVC
Sbjct: 168 KGDSSRVTVKDVTFKNITGTSSTPEAVSLLCSDKKPYEGVTMSDVKIEYSGKNNKTMAVC 347
Query: 685 SNAKGTAKGSLQALDCLV*S 744
+N K TA G +A C *+
Sbjct: 348 TNVKVTATGVDKANACAA*A 407
Score = 92.7 bits (196), Expect(2) = 6e-035
Identities = 46/78 (58%), Positives = 53/78 (67%)
Frame = -1 / -1
Query: 746 IDQTRQSRAWRLPLAVPLALLHTAMVLLFLPAYSTLTSMSETPLHGCVSEQSRLTASGVD 567
+ Q + A P+AV L L+ TAMVLLFLP YS LTS TP G +SEQSRLTASGV+
Sbjct: 409 VAQAAHALALSTPVAVTLTLVQTAMVLLFLPEYSILTSDIVTPS*GFLSEQSRLTASGVE 230
Query: 566 DVPEMLRKVTSLMETCEE 513
+VP M KVTSL T EE
Sbjct: 229 EVPVMFLKVTSLTVTLEE 176
Score = 80.8 bits (170), Expect(2) = 2e-044
Identities = 30/59 (50%), Positives = 45/59 (76%)
Frame = +1 / +3
Query: 340 VLRNTTNGVRIKSYEDAESVLTASHLTFENIRMEEVANPIIIDQYFCPQKVCPGKRSNS 516
+ + +TNG+RIKSYED++S L AS +++ENI+M++ PIIIDQ +CP K+C K +S
Sbjct: 6 LFKGSTNGLRIKSYEDSKSPLVASKISYENIKMDDSGYPIIIDQKYCPNKLCTAKGDSS 182
Score = 75.3 bits (158), Expect(2) = 6e-035
Identities = 31/55 (56%), Positives = 41/55 (74%)
Frame = -3 / -3
Query: 516 GVASLAGADLLGAEVLVDDDGVGHLLHPDVLEGEMGRREHRLGILVRLDAHAVGG 352
G +L GA+ +GA +L+DDDGV ++H DVL ++GR E LG+LVRLDA AVGG
Sbjct: 182 GGVALGGAEFVGAVLLIDDDGVARVVHLDVLVADLGRDEGGLGVLVRLDAEAVGG 18
>gb|BQ753595.1|BQ753595 EBan01_SQ004_L07_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ004_L07 5', mRNA sequence
Length = 436
Score = 123 bits (264), Expect(2) = 7e-044
Identities = 50/80 (62%), Positives = 65/80 (81%)
Frame = +1 / +2
Query: 505 RSNSSHVSIKDVTFRNISGTSSTPEAVSLLCSETQPCSGVSLIDVNVEYAGKNNKTMAVC 684
+ +SS V++KDVTF+NI+GTSSTPEAVSLLCS+ +PC GV++ DV +EY+GKNNKTMAVC
Sbjct: 143 KGDSSRVTVKDVTFKNITGTSSTPEAVSLLCSDKKPCEGVTMSDVKIEYSGKNNKTMAVC 322
Query: 685 SNAKGTAKGSLQALDCLV*S 744
+N K TA G +A C *+
Sbjct: 323 TNVKVTATGVDKANACAA*A 382
Score = 94.5 bits (200), Expect(2) = 2e-033
Identities = 46/78 (58%), Positives = 53/78 (67%)
Frame = -1 / -2
Query: 746 IDQTRQSRAWRLPLAVPLALLHTAMVLLFLPAYSTLTSMSETPLHGCVSEQSRLTASGVD 567
+ Q + A P+AV L L+ TAMVLLFLP YS LTS TP G +SEQSRLTASGV+
Sbjct: 384 VAQAAHALALSTPVAVTLTLVQTAMVLLFLPEYSILTSDIVTPSQGFLSEQSRLTASGVE 205
Query: 566 DVPEMLRKVTSLMETCEE 513
+VP M KVTSL T EE
Sbjct: 204 EVPVMFLKVTSLTVTLEE 151
Score = 73.9 bits (155), Expect(2) = 7e-044
Identities = 28/52 (53%), Positives = 40/52 (76%)
Frame = +1 / +2
Query: 361 GVRIKSYEDAESVLTASHLTFENIRMEEVANPIIIDQYFCPQKVCPGKRSNS 516
G+RIKSYED++S L AS +++ENI+M++ PIIIDQ +CP K+C K +S
Sbjct: 2 GLRIKSYEDSKSPLVASKISYENIKMDDSGYPIIIDQKYCPNKLCTAKGDSS 157
Score = 68.0 bits (142), Expect(2) = 2e-033
Identities = 28/52 (53%), Positives = 38/52 (73%)
Frame = -3 / -1
Query: 516 GVASLAGADLLGAEVLVDDDGVGHLLHPDVLEGEMGRREHRLGILVRLDAHA 361
G +L GA+ +GA +L+DDDGV ++H DVL ++GR E LG+LVRLDA A
Sbjct: 157 GGVALGGAEFVGAVLLIDDDGVARVVHLDVLVADLGRDEGGLGVLVRLDAEA 2
>gb|BQ753283.1|BQ753283 EBan01_SQ001_C11_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ001_C11 5', mRNA sequence
Length = 647
Score = 123 bits (264), Expect(2) = 4e-032
Identities = 50/80 (62%), Positives = 65/80 (81%)
Frame = +1 / +1
Query: 505 RSNSSHVSIKDVTFRNISGTSSTPEAVSLLCSETQPCSGVSLIDVNVEYAGKNNKTMAVC 684
+ +SS V++KDVTF+NI+GTSSTPEAVSLLCS+ +PC GV++ DV +EY+GKNNKTMAVC
Sbjct: 64 KGDSSRVTVKDVTFKNITGTSSTPEAVSLLCSDKKPCEGVTMSDVKIEYSGKNNKTMAVC 243
Query: 685 SNAKGTAKGSLQALDCLV*S 744
+N K TA G +A C *+
Sbjct: 244 TNVKVTATGVDKANACAA*A 303
Score = 94.5 bits (200), Expect(2) = 4e-023
Identities = 46/78 (58%), Positives = 53/78 (67%)
Frame = -1 / -1
Query: 746 IDQTRQSRAWRLPLAVPLALLHTAMVLLFLPAYSTLTSMSETPLHGCVSEQSRLTASGVD 567
+ Q + A P+AV L L+ TAMVLLFLP YS LTS TP G +SEQSRLTASGV+
Sbjct: 305 VAQAAHALALSTPVAVTLTLVQTAMVLLFLPEYSILTSDIVTPSQGFLSEQSRLTASGVE 126
Query: 566 DVPEMLRKVTSLMETCEE 513
+VP M KVTSL T EE
Sbjct: 125 EVPVMFLKVTSLTVTLEE 72
Score = 34.5 bits (69), Expect(2) = 4e-032
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1 / +1
Query: 454 PIIIDQYFCPQKVCPGKRSNS 516
PIIIDQ +CP K+C K +S
Sbjct: 16 PIIIDQKYCPNKLCTAKGDSS 78
Score = 33.6 bits (67), Expect(2) = 4e-023
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = -3 / -3
Query: 516 GVASLAGADLLGAEVLVDDDGVGHLL 439
G +L GA+ +GA +L+DDDGV ++
Sbjct: 78 GGVALGGAEFVGAVLLIDDDGVARVV 1
>gb|BQ464404.1|BQ464404 HF02C24r HF Hordeum vulgare subsp. vulgare cDNA clone HF02C24
5-PRIME, mRNA sequence
Length = 579
Score = 130 bits (278), Expect = 1e-029
Identities = 51/126 (40%), Positives = 81/126 (64%)
Frame = +1 / +2
Query: 7 TNGTISGIKLLNSKFFHINIDTSKDITVKDVNITAPADVENTDGVHVGGSSNVRITNSTI 186
+N ++GI ++NS H+ D + + V D+ I++P + NTDG+H+ S +V I ++ +
Sbjct: 188 SNVVVAGITIVNSSQCHLKFDNCQGVLVHDLTISSPENSLNTDGIHLQNSKDVSIHHTNL 367
Query: 187 GTGDDCVSIGPGSDGVMVNNITCGPGQGISVGCLGRYKDEKDVSDVTVRDCVLRNTTNGV 366
GDDC+SI G + ++N+ CGPG GIS+G LGR + VS+VTVRD + T GV
Sbjct: 368 ACGDDCISIQTGCSNIYIHNVNCGPGHGISIGGLGRDNTKACVSNVTVRDVNMFRTMTGV 547
Query: 367 RIKSYE 384
RIK+++
Sbjct: 548 RIKTWQ 565
>gb|CB881820.1|CB881820 HM10P12w HM Hordeum vulgare subsp. vulgare cDNA clone HM10P12
3-PRIME, mRNA sequence
Length = 608
Score = 113 bits (242), Expect(2) = 3e-028
Identities = 49/120 (40%), Positives = 69/120 (57%)
Frame = +1 / +3
Query: 19 ISGIKLLNSKFFHINIDTSKDITVKDVNITAPADVENTDGVHVGGSSNVRITNSTIGTGD 198
+ G+ + N++ H+ + S+ + + + I AP D NTDG+HV S+ V IT + IGTGD
Sbjct: 132 VRGLTIQNAQQMHLTVSRSRGVRLDGMAIQAPGDSPNTDGIHVAESTAVTITGARIGTGD 311
Query: 199 DCVSIGPGSDGVMVNNITCGPGQGISVGCLGRYKDEKDVSDVTVRDCVLRNTTNGVRIKS 378
DCVSI S V + I C PG GIS+G LG+ V VT+ + NGVRIK+
Sbjct: 312 DCVSISNASFAVKMKGIVCDPGHGISIGSLGQGGSYAAVEGVTLDGARIARAQNGVRIKT 491
Score = 31.8 bits (63), Expect(2) = 3e-028
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +1 / +3
Query: 412 HLTFENIRMEEVANPIIIDQYFCPQK 489
++ F N+ ++ V +PIIIDQ++C +
Sbjct: 519 NVRFTNVLVDGVDHPIIIDQFYCDSR 596
>gb|BQ470839.1|BQ470839 HX04D02r HX Hordeum vulgare subsp. vulgare cDNA clone HX04D02
5-PRIME, mRNA sequence
Length = 650
Score = 86.8 bits (183), Expect(2) = 7e-028
Identities = 37/123 (30%), Positives = 62/123 (50%)
Frame = +1 / +2
Query: 19 ISGIKLLNSKFFHINIDTSKDITVKDVNITAPADVENTDGVHVGGSSNVRITNSTIGTGD 198
+ G+ L N + H+ + + + +P +TDG+ + S +V I + I TG
Sbjct: 65 VQGVTLQNGQQHHLTFTRCSNARASFLRVASPESSPDTDGIRLVNSISVHINDIHIATGG 244
Query: 199 DCVSIGPGSDGVMVNNITCGPGQGISVGCLGRYKDEKDVSDVTVRDCVLRNTTNGVRIKS 378
CVS+ V + I+CGPG GIS+G +G + + V + NTTNG+ IK+
Sbjct: 245 ACVSMAGNCTDVRLRYISCGPGNGISIGSIGETPVADRLEKIEVDTMFIANTTNGLLIKT 424
Query: 379 YED 387
++D
Sbjct: 425 WQD 433
Score = 57.4 bits (119), Expect(2) = 7e-028
Identities = 24/66 (36%), Positives = 41/66 (62%)
Frame = +1 / +2
Query: 406 ASHLTFENIRMEEVANPIIIDQYFCPQKVCPGKRSNSSHVSIKDVTFRNISGTSSTPEAV 585
A + F N+ M+ V+NPIIIDQY + G + + V+++ + + NI+GTS++ AV
Sbjct: 446 ARKVKFANVVMKNVSNPIIIDQYRSEHPIPCGSTAATRTVAVEKIDYVNIAGTSASKRAV 625
Query: 586 SLLCSE 603
+ CS+
Sbjct: 626 TFSCSD 643
>gb|CA030305.1|CA030305 HX06K19r HX Hordeum vulgare subsp. vulgare cDNA clone HX06K19
5-PRIME, mRNA sequence
Length = 546
Score = 74.8 bits (157), Expect(2) = 2e-024
Identities = 32/81 (39%), Positives = 51/81 (62%)
Frame = +1 / +1
Query: 406 ASHLTFENIRMEEVANPIIIDQYFCPQKVCPGKRSNSSHVSIKDVTFRNISGTSSTPEAV 585
A + F N+ M+ V+NPIIIDQY + G + + V+++ + + NI+GTS++ AV
Sbjct: 229 ARKVKFANVVMKNVSNPIIIDQYRSEHPIPCGSTAATRTVAVEKIDYVNIAGTSASKRAV 408
Query: 586 SLLCSETQPCSGVSLIDVNVE 648
+ CS+ PC VSL DVN++
Sbjct: 409 TFSCSDVVPCRQVSLKDVNLK 471
Score = 57.9 bits (120), Expect(2) = 2e-024
Identities = 24/65 (36%), Positives = 36/65 (55%)
Frame = +1 / +1
Query: 193 GDDCVSIGPGSDGVMVNNITCGPGQGISVGCLGRYKDEKDVSDVTVRDCVLRNTTNGVRI 372
G CVS+ V + I+CGPG GIS+G +G + + V + NTTNG+ I
Sbjct: 22 GGACVSMAGNCTDVRLRYISCGPGNGISIGSIGETPVADRLEKIEVDTMFIANTTNGLLI 201
Query: 373 KSYED 387
K+++D
Sbjct: 202 KTWQD 216
>gb|BI957299.1|BI957299 HVSMEn0008L17f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0008L17f, mRNA sequence
Length = 458
Score = 109 bits (233), Expect = 2e-023
Identities = 42/94 (44%), Positives = 61/94 (64%)
Frame = +1 / +1
Query: 10 NGTISGIKLLNSKFFHINIDTSKDITVKDVNITAPADVENTDGVHVGGSSNVRITNSTIG 189
N T+ G+K+ NS FH D+ + + V ++I +PA NTDG+HV + +V ITN+ +
Sbjct: 82 NVTVQGLKVQNSPEFHFRFDSCRGVRVYSLSIISPALSPNTDGIHVENTQDVLITNTVVS 261
Query: 190 TGDDCVSIGPGSDGVMVNNITCGPGQGISVGCLG 291
GD+CV IG G+ V + N+TCGPG GI +G LG
Sbjct: 262 NGDNCVCIGAGTLNVHIENVTCGPGHGIIIGSLG 363
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 334,892,653
Number of Sequences: 312970
Number of extensions: 5084464
Number of successful extensions: 58782
Number of sequences better than 1.0e-020: 12
length of database: 58,378,179
effective HSP length: 52
effective length of database: 42,103,739
effective search space used: 10736453445
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)