TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3185308.2.2
(697 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA031352.1|CA031352 HX09L09r HX Hordeum vulgare subsp. v... 142 2e-033
gb|BU989542.1|BU989542 HF22A11r HF Hordeum vulgare subsp. v... 85 3e-032
gb|BU990552.1|BU990552 HF25G07r HF Hordeum vulgare subsp. v... 85 3e-032
gb|BU989257.1|BU989257 HF21D19r HF Hordeum vulgare subsp. v... 85 3e-032
gb|AV913816.1|AV913816 AV913816 K. Sato unpublished cDNA li... 137 6e-032
gb|BJ464959.1|BJ464959 BJ464959 K. Sato unpublished cDNA li... 137 6e-032
gb|BJ462348.1|BJ462348 BJ462348 K. Sato unpublished cDNA li... 87 3e-031
gb|BJ454545.1|BJ454545 BJ454545 K. Sato unpublished cDNA li... 87 3e-031
gb|BQ465629.1|BQ465629 HU04D11r HU Hordeum vulgare subsp. v... 87 3e-031
gb|CA005047.1|CA005047 HU12E04u HU Hordeum vulgare subsp. v... 87 3e-031
gb|BU990530.1|BU990530 HF25F05r HF Hordeum vulgare subsp. v... 89 4e-029
gb|AV917412.1|AV917412 AV917412 K. Sato unpublished cDNA li... 84 5e-029
gb|BQ766646.1|BQ766646 EBro08_SQ006_P15_R root, 3 week, dro... 89 5e-029
gb|CA025602.1|CA025602 HZ52K01r HZ Hordeum vulgare subsp. v... 123 1e-027
gb|BG368613.1|BG368613 HVSMEi0019P07f Hordeum vulgare 20 DA... 87 1e-027
gb|BI957345.1|BI957345 HVSMEn0009B08f Hordeum vulgare rachi... 122 3e-027
gb|CA024803.1|CA024803 HZ50F17r HZ Hordeum vulgare subsp. v... 122 3e-027
gb|BU980607.1|BU980607 HA21C12r HA Hordeum vulgare subsp. v... 114 5e-025
gb|BQ762357.1|BQ762357 EBro01_SQ005_H18_R root, 3 week, hyd... 68 1e-022
gb|CK124288.1|CK124288 BES1824108e08 BES1824 Hordeum vulgar... 106 1e-022
gb|BF256452.2|BF256452 HVSMEf0010A02f Hordeum vulgare seedl... 84 2e-022
gb|BQ461074.1|BQ461074 HE01E19r HE Hordeum vulgare subsp. v... 64 4e-022
>gb|CA031352.1|CA031352 HX09L09r HX Hordeum vulgare subsp. vulgare cDNA clone HX09L09
5-PRIME, mRNA sequence
Length = 631
Score = 142 bits (304), Expect = 2e-033
Identities = 55/126 (43%), Positives = 79/126 (62%)
Frame = -1 / +3
Query: 577 HFXLXIXAFLKIAXXKAGIVPITYRKVACXXKGGIRYTITGNQHYSEVKVTNVGGAGDVV 398
HF + F +IA +AGIVP++YR+VAC KGGIR+TI G+ +++ V VTNVGG GDV
Sbjct: 210 HFDMSQPVFQRIALYRAGIVPVSYRRVACQKKGGIRFTINGHSYFNLVLVTNVGGPGDVH 389
Query: 397 ALWVKGNKRVKWTPMKRSWGQLWTTEVDLTGESLTFRVMTADHRKATSWHVTPRDWQFGK 218
A+ VK + W + R+WGQ W + L G+ L+FRV + + S + PR W FG+
Sbjct: 390 AVSVKSTRSAAWQALSRNWGQNWQSNALLDGQGLSFRVTAGNGQSVVSNNAVPRGWSFGQ 569
Query: 217 TYQATK 200
T+ +
Sbjct: 570 TFSGAQ 587
>gb|BU989542.1|BU989542 HF22A11r HF Hordeum vulgare subsp. vulgare cDNA clone HF22A11
5-PRIME, mRNA sequence
Length = 620
Score = 85.4 bits (180), Expect(2) = 3e-032
Identities = 33/66 (50%), Positives = 48/66 (72%)
Frame = -1 / +3
Query: 577 HFXLXIXAFLKIAXXKAGIVPITYRKVACXXKGGIRYTITGNQHYSEVKVTNVGGAGDVV 398
HF L I AF KIA KAG++PI YR+V C +GG+R++++G + V ++NVGGAGDV
Sbjct: 150 HFLLPIQAFEKIALWKAGVMPIQYRRVKCLREGGVRFSVSGKSFFFTVLISNVGGAGDVR 329
Query: 397 ALWVKG 380
++ +KG
Sbjct: 330 SVKIKG 347
Score = 73.0 bits (153), Expect(2) = 3e-032
Identities = 23/51 (45%), Positives = 37/51 (72%)
Frame = -1 / +3
Query: 364 WTPMKRSWGQLWTTEVDLTGESLTFRVMTADHRKATSWHVTPRDWQFGKTY 212
W M R+WGQ+W +DLTG+ ++F + ++D T+++V P+DW+FGKTY
Sbjct: 360 WLDMGRNWGQIWHINLDLTGQPVSFELTSSDGTTMTNFNVVPKDWEFGKTY 512
>gb|BU990552.1|BU990552 HF25G07r HF Hordeum vulgare subsp. vulgare cDNA clone HF25G07
5-PRIME, mRNA sequence
Length = 565
Score = 85.4 bits (180), Expect(2) = 3e-032
Identities = 33/66 (50%), Positives = 48/66 (72%)
Frame = -1 / +3
Query: 577 HFXLXIXAFLKIAXXKAGIVPITYRKVACXXKGGIRYTITGNQHYSEVKVTNVGGAGDVV 398
HF L I AF KIA KAG++PI YR+V C +GG+R++++G + V ++NVGGAGDV
Sbjct: 150 HFLLPIQAFEKIALWKAGVMPIQYRRVKCLREGGVRFSVSGKSFFFTVLISNVGGAGDVR 329
Query: 397 ALWVKG 380
++ +KG
Sbjct: 330 SVKIKG 347
Score = 73.0 bits (153), Expect(2) = 3e-032
Identities = 23/51 (45%), Positives = 37/51 (72%)
Frame = -1 / +3
Query: 364 WTPMKRSWGQLWTTEVDLTGESLTFRVMTADHRKATSWHVTPRDWQFGKTY 212
W M R+WGQ+W +DLTG+ ++F + ++D T+++V P+DW+FGKTY
Sbjct: 360 WLDMGRNWGQIWHINLDLTGQPVSFELTSSDGTTMTNFNVVPKDWEFGKTY 512
>gb|BU989257.1|BU989257 HF21D19r HF Hordeum vulgare subsp. vulgare cDNA clone HF21D19
5-PRIME, mRNA sequence
Length = 522
Score = 85.4 bits (180), Expect(2) = 3e-032
Identities = 33/66 (50%), Positives = 48/66 (72%)
Frame = -1 / +3
Query: 577 HFXLXIXAFLKIAXXKAGIVPITYRKVACXXKGGIRYTITGNQHYSEVKVTNVGGAGDVV 398
HF L I AF KIA KAG++PI YR+V C +GG+R++++G + V ++NVGGAGDV
Sbjct: 150 HFLLPIQAFEKIALWKAGVMPIQYRRVKCLREGGVRFSVSGKSFFFTVLISNVGGAGDVR 329
Query: 397 ALWVKG 380
++ +KG
Sbjct: 330 SVKIKG 347
Score = 73.0 bits (153), Expect(2) = 3e-032
Identities = 23/51 (45%), Positives = 37/51 (72%)
Frame = -1 / +3
Query: 364 WTPMKRSWGQLWTTEVDLTGESLTFRVMTADHRKATSWHVTPRDWQFGKTY 212
W M R+WGQ+W +DLTG+ ++F + ++D T+++V P+DW+FGKTY
Sbjct: 360 WLDMGRNWGQIWHINLDLTGQPVSFELTSSDGTTMTNFNVVPKDWEFGKTY 512
>gb|AV913816.1|AV913816 AV913816 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23g08 5', mRNA sequence
Length = 657
Score = 137 bits (294), Expect = 6e-032
Identities = 53/118 (44%), Positives = 76/118 (64%)
Frame = -1 / +2
Query: 553 FLKIAXXKAGIVPITYRKVACXXKGGIRYTITGNQHYSEVKVTNVGGAGDVVALWVKGNK 374
F +IA +AGIVP++YR+VAC KGGIR+TI G+ +++ V VTNVGG GDV A+ VK +
Sbjct: 2 FQRIALYRAGIVPVSYRRVACQKKGGIRFTINGHSYFNLVLVTNVGGPGDVHAVSVKSTR 181
Query: 373 RVKWTPMKRSWGQLWTTEVDLTGESLTFRVMTADHRKATSWHVTPRDWQFGKTYQATK 200
W + R+WGQ W + L G+ L+FRV + + S + PR W FG+T+ +
Sbjct: 182 SAAWQALSRNWGQNWQSNALLDGQGLSFRVTAGNGQSVVSNNAVPRGWSFGQTFSGAQ 355
>gb|BJ464959.1|BJ464959 BJ464959 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags36l22 5', mRNA sequence
Length = 639
Score = 137 bits (294), Expect = 6e-032
Identities = 53/118 (44%), Positives = 76/118 (64%)
Frame = -1 / +2
Query: 553 FLKIAXXKAGIVPITYRKVACXXKGGIRYTITGNQHYSEVKVTNVGGAGDVVALWVKGNK 374
F +IA +AGIVP++YR+VAC KGGIR+TI G+ +++ V VTNVGG GDV A+ VK +
Sbjct: 2 FQRIALYRAGIVPVSYRRVACQKKGGIRFTINGHSYFNLVLVTNVGGPGDVHAVSVKSTR 181
Query: 373 RVKWTPMKRSWGQLWTTEVDLTGESLTFRVMTADHRKATSWHVTPRDWQFGKTYQATK 200
W + R+WGQ W + L G+ L+FRV + + S + PR W FG+T+ +
Sbjct: 182 SAAWQALSRNWGQNWQSNALLDGQGLSFRVTAGNGQSVVSNNAVPRGWSFGQTFSGAQ 355
>gb|BJ462348.1|BJ462348 BJ462348 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak24n09 3', mRNA sequence
Length = 720
Score = 86.8 bits (183), Expect(2) = 3e-031
Identities = 33/67 (49%), Positives = 50/67 (74%)
Frame = -1 / -3
Query: 577 HFXLXIXAFLKIAXXKAGIVPITYRKVACXXKGGIRYTITGNQHYSEVKVTNVGGAGDVV 398
HF + A+L+I +AGIVP++YR+V C KGG+R+TI G+ +++ V VTNV GAGDV
Sbjct: 631 HFDMAEPAYLQIGIYRAGIVPVSYRRVPCVKKGGMRFTINGHSYFNLVLVTNVAGAGDVQ 452
Query: 397 ALWVKGN 377
++ +KG+
Sbjct: 451 SVSIKGS 431
Score = 68.4 bits (143), Expect(2) = 3e-031
Identities = 24/52 (46%), Positives = 33/52 (63%)
Frame = -1 / -3
Query: 364 WTPMKRSWGQLWTTEVDLTGESLTFRVMTADHRKATSWHVTPRDWQFGKTYQ 209
W M R+WGQ W + DL G+SL+FRV +D R TS + P W FG+T++
Sbjct: 421 WQAMSRNWGQNWQSNADLDGQSLSFRVTLSDGRTVTSNNAAPAGWSFGQTFE 266
>gb|BJ454545.1|BJ454545 BJ454545 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak24n09 5', mRNA sequence
Length = 654
Score = 86.8 bits (183), Expect(2) = 3e-031
Identities = 33/67 (49%), Positives = 50/67 (74%)
Frame = -1 / +1
Query: 577 HFXLXIXAFLKIAXXKAGIVPITYRKVACXXKGGIRYTITGNQHYSEVKVTNVGGAGDVV 398
HF + A+L+I +AGIVP++YR+V C KGG+R+TI G+ +++ V VTNV GAGDV
Sbjct: 136 HFDMAEPAYLQIGIYRAGIVPVSYRRVPCVKKGGMRFTINGHSYFNLVLVTNVAGAGDVQ 315
Query: 397 ALWVKGN 377
++ +KG+
Sbjct: 316 SVSIKGS 336
Score = 68.4 bits (143), Expect(2) = 3e-031
Identities = 24/52 (46%), Positives = 33/52 (63%)
Frame = -1 / +1
Query: 364 WTPMKRSWGQLWTTEVDLTGESLTFRVMTADHRKATSWHVTPRDWQFGKTYQ 209
W M R+WGQ W + DL G+SL+FRV +D R TS + P W FG+T++
Sbjct: 346 WQAMSRNWGQNWQSNADLDGQSLSFRVTLSDGRTVTSNNAAPAGWSFGQTFE 501
>gb|BQ465629.1|BQ465629 HU04D11r HU Hordeum vulgare subsp. vulgare cDNA clone HU04D11
5-PRIME, mRNA sequence
Length = 625
Score = 86.8 bits (183), Expect(2) = 3e-031
Identities = 33/67 (49%), Positives = 50/67 (74%)
Frame = -1 / +2
Query: 577 HFXLXIXAFLKIAXXKAGIVPITYRKVACXXKGGIRYTITGNQHYSEVKVTNVGGAGDVV 398
HF + A+L+I +AGIVP++YR+V C KGG+R+TI G+ +++ V VTNV GAGDV
Sbjct: 74 HFDMAEPAYLQIGIYRAGIVPVSYRRVPCVKKGGMRFTINGHSYFNLVLVTNVAGAGDVQ 253
Query: 397 ALWVKGN 377
++ +KG+
Sbjct: 254 SVSIKGS 274
Score = 68.4 bits (143), Expect(2) = 3e-031
Identities = 24/52 (46%), Positives = 33/52 (63%)
Frame = -1 / +2
Query: 364 WTPMKRSWGQLWTTEVDLTGESLTFRVMTADHRKATSWHVTPRDWQFGKTYQ 209
W M R+WGQ W + DL G+SL+FRV +D R TS + P W FG+T++
Sbjct: 284 WQAMSRNWGQNWQSNADLDGQSLSFRVTLSDGRTVTSNNAAPAGWSFGQTFE 439
>gb|CA005047.1|CA005047 HU12E04u HU Hordeum vulgare subsp. vulgare cDNA clone HU12E04
3-PRIME, mRNA sequence
Length = 529
Score = 86.8 bits (183), Expect(2) = 3e-031
Identities = 33/67 (49%), Positives = 50/67 (74%)
Frame = -1 / +3
Query: 577 HFXLXIXAFLKIAXXKAGIVPITYRKVACXXKGGIRYTITGNQHYSEVKVTNVGGAGDVV 398
HF + A+L+I +AGIVP++YR+V C KGG+R+TI G+ +++ V VTNV GAGDV
Sbjct: 60 HFDMAEPAYLQIGIYRAGIVPVSYRRVPCVKKGGMRFTINGHSYFNLVLVTNVAGAGDVQ 239
Query: 397 ALWVKGN 377
++ +KG+
Sbjct: 240 SVSIKGS 260
Score = 68.4 bits (143), Expect(2) = 3e-031
Identities = 24/52 (46%), Positives = 33/52 (63%)
Frame = -1 / +3
Query: 364 WTPMKRSWGQLWTTEVDLTGESLTFRVMTADHRKATSWHVTPRDWQFGKTYQ 209
W M R+WGQ W + DL G+SL+FRV +D R TS + P W FG+T++
Sbjct: 270 WQAMSRNWGQNWQSNADLDGQSLSFRVTLSDGRTVTSNNAAPAGWSFGQTFE 425
>gb|BU990530.1|BU990530 HF25F05r HF Hordeum vulgare subsp. vulgare cDNA clone HF25F05
5-PRIME, mRNA sequence
Length = 515
Score = 88.6 bits (187), Expect(2) = 4e-029
Identities = 33/65 (50%), Positives = 49/65 (75%)
Frame = -1 / +1
Query: 577 HFXLXIXAFLKIAXXKAGIVPITYRKVACXXKGGIRYTITGNQHYSEVKVTNVGGAGDVV 398
HF L F +IA +AG+VP+ YR+VAC GGIR+TITG+ +++ V +TNV GAGD++
Sbjct: 43 HFDLAEPVFTRIAQARAGVVPVQYRRVACVKTGGIRFTITGHSYFNLVLITNVAGAGDLM 222
Query: 397 ALWVK 383
+++VK
Sbjct: 223 SVYVK 237
Score = 59.3 bits (123), Expect(2) = 4e-029
Identities = 22/55 (40%), Positives = 31/55 (56%)
Frame = -1 / +1
Query: 364 WTPMKRSWGQLWTTEVDLTGESLTFRVMTADHRKATSWHVTPRDWQFGKTYQATK 200
W M +WG W L G+ L+FRV T+D R TS +V P W FG+T+ ++
Sbjct: 253 WLTMSHNWGANWQNGAMLNGQPLSFRVTTSDGRTTTSNNVAPYGWTFGQTFAGSQ 417
>gb|AV917412.1|AV917412 AV917412 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags18m24 5', mRNA sequence
Length = 626
Score = 84.0 bits (177), Expect(2) = 5e-029
Identities = 33/61 (54%), Positives = 46/61 (75%)
Frame = -1 / +2
Query: 556 AFLKIAXXKAGIVPITYRKVACXXKGGIRYTITGNQHYSEVKVTNVGGAGDVVALWVKGN 377
AFL IA +AGIVP++YR+V C KGGIR+TI G+ +++ V VTNV GAGD ++ +KG
Sbjct: 14 AFLHIAQYRAGIVPVSYRRVPCVKKGGIRFTINGHSYFNLVLVTNVAGAGDARSVSIKGT 193
Query: 376 K 374
+
Sbjct: 194 R 196
Score = 63.4 bits (132), Expect(2) = 5e-029
Identities = 23/58 (39%), Positives = 33/58 (56%)
Frame = -1 / +2
Query: 373 RVKWTPMKRSWGQLWTTEVDLTGESLTFRVMTADHRKATSWHVTPRDWQFGKTYQATK 200
R W M R+WG W + L G+ L+FRV ++D R TS P WQFG+T++ +
Sbjct: 194 RTGWQAMSRNWGMNWQSNTFLDGQCLSFRVTSSDGRTVTSNAAAPAGWQFGQTFEGAQ 367
>gb|BQ766646.1|BQ766646 EBro08_SQ006_P15_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ006_P15 5', mRNA sequence
Length = 454
Score = 88.6 bits (187), Expect(2) = 5e-029
Identities = 33/65 (50%), Positives = 49/65 (75%)
Frame = -1 / +1
Query: 577 HFXLXIXAFLKIAXXKAGIVPITYRKVACXXKGGIRYTITGNQHYSEVKVTNVGGAGDVV 398
HF L F +IA +AG+VP+ YR+VAC GGIR+TITG+ +++ V +TNV GAGD++
Sbjct: 91 HFDLAEPVFTRIAQARAGVVPVQYRRVACVKTGGIRFTITGHSYFNLVLITNVAGAGDLM 270
Query: 397 ALWVK 383
+++VK
Sbjct: 271 SVYVK 285
Score = 58.8 bits (122), Expect(2) = 5e-029
Identities = 22/51 (43%), Positives = 29/51 (56%)
Frame = -1 / +1
Query: 364 WTPMKRSWGQLWTTEVDLTGESLTFRVMTADHRKATSWHVTPRDWQFGKTY 212
W M +WG W L G+ L+FRV T+D R TS +V P W FG+T+
Sbjct: 301 WLTMSHNWGANWQNGAMLNGQPLSFRVTTSDGRTTTSNNVAPYGWTFGQTF 453
>gb|CA025602.1|CA025602 HZ52K01r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ52K01
5-PRIME, mRNA sequence
Length = 418
Score = 123 bits (263), Expect = 1e-027
Identities = 49/108 (45%), Positives = 69/108 (63%)
Frame = -1 / +2
Query: 577 HFXLXIXAFLKIAXXKAGIVPITYRKVACXXKGGIRYTITGNQHYSEVKVTNVGGAGDVV 398
HF + F +IA +AGIVP++YR+VAC KGGIR+TI G+ +++ V VTNVGG GDV
Sbjct: 83 HFDMSQPVFQRIALYRAGIVPVSYRRVACQKKGGIRFTINGHSYFNLVLVTNVGGPGDVH 262
Query: 397 ALWVKGNKRVKWTPMKRSWGQLWTTEVDLTGESLTFRVMTADHRKATS 254
A+ VK + W + R+WGQ W + L G+ L+FRV + + S
Sbjct: 263 AVSVKSTRSAAWQALSRNWGQNWQSNALLDGQGLSFRVTAGNGQSVVS 406
>gb|BG368613.1|BG368613 HVSMEi0019P07f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0019P07f, mRNA sequence
Length = 619
Score = 86.8 bits (183), Expect(2) = 1e-027
Identities = 34/68 (50%), Positives = 48/68 (70%)
Frame = -1 / +1
Query: 577 HFXLXIXAFLKIAXXKAGIVPITYRKVACXXKGGIRYTITGNQHYSEVKVTNVGGAGDVV 398
HF + AFL I +AGIVP++YR+V C KGGIR+TI G+ +++ V VTNV GAGD
Sbjct: 19 HFDMAEPAFLHIGQYRAGIVPVSYRRVPCVKKGGIRFTINGHSYFNLVLVTNVAGAGDAR 198
Query: 397 ALWVKGNK 374
++ +KG +
Sbjct: 199 SVSIKGTR 222
Score = 56.1 bits (116), Expect(2) = 1e-027
Identities = 22/54 (40%), Positives = 30/54 (55%)
Frame = -1 / +1
Query: 373 RVKWTPMKRSWGQLWTTEVDLTGESLTFRVMTADHRKATSWHVTPRDWQFGKTY 212
R W M R+WG W + L G+ L+FRV ++D R TS P WQF +T+
Sbjct: 220 RTGWQAMSRNWGMNWQSITFLDGQCLSFRVTSSDGRTVTSNAAGPAGWQFRQTF 381
>gb|BI957345.1|BI957345 HVSMEn0009B08f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0009B08f, mRNA sequence
Length = 651
Score = 122 bits (260), Expect = 3e-027
Identities = 48/98 (48%), Positives = 66/98 (67%)
Frame = -1 / +3
Query: 577 HFXLXIXAFLKIAXXKAGIVPITYRKVACXXKGGIRYTITGNQHYSEVKVTNVGGAGDVV 398
HF + F +IA +AGIVP++YR+VAC KGGIR+TI G+ +++ V VTNVGG GDV
Sbjct: 189 HFDMSQPVFQRIALYRAGIVPVSYRRVACQKKGGIRFTINGHSYFNLVLVTNVGGPGDVH 368
Query: 397 ALWVKGNKRVKWTPMKRSWGQLWTTEVDLTGESLTFRV 284
A+ VK + W + R+WGQ W + L G+ L+FRV
Sbjct: 369 AVSVKSTRSAAWQALSRNWGQNWQSNALLDGQGLSFRV 482
>gb|CA024803.1|CA024803 HZ50F17r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ50F17
5-PRIME, mRNA sequence
Length = 519
Score = 122 bits (260), Expect = 3e-027
Identities = 48/98 (48%), Positives = 66/98 (67%)
Frame = -1 / +2
Query: 577 HFXLXIXAFLKIAXXKAGIVPITYRKVACXXKGGIRYTITGNQHYSEVKVTNVGGAGDVV 398
HF + F +IA +AGIVP++YR+VAC KGGIR+TI G+ +++ V VTNVGG GDV
Sbjct: 206 HFDMSQPVFQRIALYRAGIVPVSYRRVACQKKGGIRFTINGHSYFNLVLVTNVGGPGDVH 385
Query: 397 ALWVKGNKRVKWTPMKRSWGQLWTTEVDLTGESLTFRV 284
A+ VK + W + R+WGQ W + L G+ L+FRV
Sbjct: 386 AVSVKSTRSAAWQALSRNWGQNWQSNALLDGQGLSFRV 499
>gb|BU980607.1|BU980607 HA21C12r HA Hordeum vulgare subsp. vulgare cDNA clone HA21C12
5-PRIME, mRNA sequence
Length = 561
Score = 114 bits (244), Expect = 5e-025
Identities = 45/113 (39%), Positives = 67/113 (59%)
Frame = -1 / +3
Query: 532 KAGIVPITYRKVACXXKGGIRYTITGNQHYSEVKVTNVGGAGDVVALWVKGNKRVKWTPM 353
+ GI+PI Y++V C KGG+R+TI+G+ ++ V TNV AG V A+ V+G+K W M
Sbjct: 15 RGGIIPIIYQRVPCVKKGGVRFTISGHDYFQLVLPTNVAAAGSVRAMDVRGSKSGDWMAM 194
Query: 352 KRSWGQLWTTEVDLTGESLTFRVMTADHRKATSWHVTPRDWQFGKTYQATKNF 194
+WG W + L G+ L+FRV D + V PR W+FG+T+ + F
Sbjct: 195 AHNWGANWHSLAYLNGQGLSFRVTITDGQTLVFSDVVPRTWRFGQTFSSNLQF 353
>gb|BQ762357.1|BQ762357 EBro01_SQ005_H18_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ005_H18 5', mRNA sequence
Length = 535
Score = 68.4 bits (143), Expect(2) = 1e-022
Identities = 24/52 (46%), Positives = 33/52 (63%)
Frame = -1 / +1
Query: 364 WTPMKRSWGQLWTTEVDLTGESLTFRVMTADHRKATSWHVTPRDWQFGKTYQ 209
W M R+WGQ W + DL G+SL+FRV +D R TS + P W FG+T++
Sbjct: 148 WQAMSRNWGQNWQSNADLDGQSLSFRVTLSDGRTVTSNNAAPAGWSFGQTFE 303
Score = 57.9 bits (120), Expect(2) = 1e-022
Identities = 22/44 (50%), Positives = 33/44 (75%)
Frame = -1 / +1
Query: 508 YRKVACXXKGGIRYTITGNQHYSEVKVTNVGGAGDVVALWVKGN 377
Y +V C KGG+R+TI G+ +++ V VTNV GAGDV ++ +KG+
Sbjct: 7 YCRVPCVKKGGMRFTINGHSYFNLVLVTNVAGAGDVQSVSIKGS 138
>gb|CK124288.1|CK124288 BES1824108e08 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010E088 5-PRIME, mRNA sequence
Length = 542
Score = 106 bits (226), Expect = 1e-022
Identities = 45/114 (39%), Positives = 65/114 (57%)
Frame = -1 / +2
Query: 577 HFXLXIXAFLKIAXXKAGIVPITYRKVACXXKGGIRYTITGNQHYSEVKVTNVGGAGDVV 398
HF + A+ KI + GI+PI Y++V C KGG+R+TI+G+ ++ V TNV AG V
Sbjct: 38 HFDMAQPAWEKIGVYRGGIIPIIYQRVPCVKKGGVRFTISGHDYFQLVLPTNVAAAGSVR 217
Query: 397 ALWVKGNKRVKWTPMKRSWGQLWTTEVDLTGESLTFRVMTADHRKATSWHVTPR 236
A+ V+G+K W M +WG W + L G+ L+FRV D + V PR
Sbjct: 218 AMDVRGSKSGDWMAMAHNWGANWHSLAYLNGQGLSFRVTITDGQTLVFSDVVPR 379
>gb|BF256452.2|BF256452 HVSMEf0010A02f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0010A02f, mRNA sequence
Length = 839
Score = 84.0 bits (177), Expect(2) = 2e-022
Identities = 33/66 (50%), Positives = 47/66 (71%)
Frame = -1 / +1
Query: 577 HFXLXIXAFLKIAXXKAGIVPITYRKVACXXKGGIRYTITGNQHYSEVKVTNVGGAGDVV 398
HF L I AF KIA KAG++PI YR+V C +GG+R++++G + V ++NVGGAGDV
Sbjct: 268 HFLLPIQAFEKIALWKAGVMPIQYRRVKCLREGGVRFSVSGKSFFFTVLISNVGGAGDVR 447
Query: 397 ALWVKG 380
+ +KG
Sbjct: 448 SRKIKG 465
Score = 41.4 bits (84), Expect(2) = 2e-022
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -1 / +1
Query: 364 WTPMKRSWGQLWTTEVDLTGESLTFRVMTADHRKATSWHVTPRDW 230
W M R+WGQ+W DLTG+ ++F + D T+ + P+ +
Sbjct: 478 WLYMGRNWGQIWVIIFDLTGQPVSFGLTLGDGATKTNNYRVPQGY 612
>gb|BQ461074.1|BQ461074 HE01E19r HE Hordeum vulgare subsp. vulgare cDNA clone HE01E19
5-PRIME, mRNA sequence
Length = 397
Score = 64.3 bits (134), Expect(2) = 4e-022
Identities = 21/51 (41%), Positives = 37/51 (72%)
Frame = -1 / +2
Query: 526 GIVPITYRKVACXXKGGIRYTITGNQHYSEVKVTNVGGAGDVVALWVKGNK 374
GIVP+ Y++V C KGG+R+T+ G+ ++ V V+NVG G + ++ +KG++
Sbjct: 86 GIVPVLYQRVPCAKKGGVRFTVNGHDYFELVLVSNVGSVGSIRSVSIKGSR 238
Score = 60.2 bits (125), Expect(2) = 4e-022
Identities = 22/54 (40%), Positives = 33/54 (61%)
Frame = -1 / +2
Query: 373 RVKWTPMKRSWGQLWTTEVDLTGESLTFRVMTADHRKATSWHVTPRDWQFGKTY 212
R W PM R+WG W + L+G+SL+F+V + D + T +V P W FG+T+
Sbjct: 236 RTGWMPMSRNWGVNWQSNALLSGQSLSFQVTSTDGQTITFPNVAPAGWGFGQTF 397
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 247,856,347
Number of Sequences: 312970
Number of extensions: 3905452
Number of successful extensions: 71357
Number of sequences better than 1.0e-020: 25
length of database: 58,378,179
effective HSP length: 51
effective length of database: 42,416,709
effective search space used: 7635007620
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)